pre-miRNA Information
pre-miRNA hsa-mir-4747   
Genomic Coordinates chr19: 4932687 - 4932740
Description Homo sapiens miR-4747 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4747-5p
Sequence 1| AGGGAAGGAGGCUUGGUCUUAG |22
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs560927363 4 dbSNP
rs1471226927 10 dbSNP
rs763137545 12 dbSNP
rs767337154 15 dbSNP
rs775298039 16 dbSNP
rs760472311 19 dbSNP
rs1207950315 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TMEM37   
Synonyms PR, PR1
Description transmembrane protein 37
Transcript NM_183240   
Expression
Putative miRNA Targets on TMEM37
3'UTR of TMEM37
(miRNA target sites are highlighted)
>TMEM37|NM_183240|3'UTR
   1 CCGTGGAAATTTTAGGCCCCCTCCAGGGACATCAGATTCCACAAGAAAATATGGTCAAAATGGGACTTTTCCAGCATGTG
  81 GCCTCTGGTGGGGCTGGGTTGGACAAGGGCCTTGAAACGGCTGCCTGTTTGCCGATAACTTGTGGGTGGTCAGCCAGAAA
 161 TGGCCCGGGGGCCTCTGCACCTGGTCTGCAGGGCCAGAGGCCAGGAGGGTGCCTCAGTGCCACCAACTGCACAGGCTTAG
 241 CCAGATGTTGATTTTAGAGGAAGAAAAAAACATTTTAAAACTCCTTCTTGAATTTTCTTCCCTGGACTGGAATACAGTTG
 321 GAAGCACAGGGGTAACTGGTACCTGAGCTAGCTGCACAGCCAAGGATAGTTCATGCCTGTTTCATTGACACGTGCTGGGA
 401 TAGGGGCTGCAGAATCCCTGGGGCTCCCAGGGTTGTTAAGAATGGATCATTCTTCCAGCTAAGGGTCCAATCAGTGCCTA
 481 GGACTTTCTTCCACCAGCTCAAAGGGCCTTCGTATGTATGTCCCTGGCTTCAGCTTTGGTCATGCCAAAGAGGCAGAGTT
 561 CAGGATTCCCTCAGAATGCCCTGCACACAGTAGGTTTCCAAACCATTTGACTCGGTTTGCCTCCCTGCCCGTTGTTTAAA
 641 CCTTACAAACCCTGGATAACCCCATCTTCTAGCAGCTGGCTGTGCCTCTGGGAGCTCTGCCTATCAGAACCCTACCTTAA
 721 GGTGGGTTTCCTTCCGAGAAGAGTTCTTGAGCAAGCTCTCCCAGGAGGGCCCACCTGACTGCTAATACACAGCCCTCCCC
 801 AAGGCCCGTGTGTGCATGTGTCTGTCTTTTGTGAGGGTTAGACAGCCTCAGGGCACCATTTTTAATCCCAGAACACATTT
 881 CAAAGAGCACGTATCTAGACCTGCTGGACTCTGCAGGGGGTGAGGGGGAACAGCGAGAGCTTGGGTAATGATTAACACCC
 961 ATGCTGGGGATGCATGGAGGTGAAGGGGGCCAGGAACCAGTGGAGATTTCCATCCTTGCCAGCACGTCTGTACTTCTGTT
1041 CATTAAAGTGCTCCCTTTCTAGTCCTTTTTCTGCCCAGAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gaUUCUGGUUCGGAGGAAGGga 5'
            |||: :::|::|||||||  
Target 5' ttAAGG-TGGGTTTCCTTCCga 3'
717 - 737 143.00 -18.40
2
miRNA  3' gauucuGGUUCGGAGGAAGGGa 5'
                :::| ::|:|||||| 
Target 5' tccttcTTGAATTTTCTTCCCt 3'
282 - 303 136.00 -14.10
3
miRNA  3' gauuCUGGUUC-GGAGGAAGGga 5'
              | |:|:| |:|:|||||  
Target 5' cagtGCCTAGGACTTTCTTCCac 3'
472 - 494 126.00 -15.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30499522 3 COSMIC
COSN26999047 4 COSMIC
COSN15137734 12 COSMIC
COSN9075779 39 COSMIC
COSN31782173 46 COSMIC
COSN31505274 72 COSMIC
COSN18727312 93 COSMIC
COSN30540388 98 COSMIC
COSN19711648 104 COSMIC
COSN31958249 104 COSMIC
COSN30453716 133 COSMIC
COSN9075780 372 COSMIC
COSN23936059 433 COSMIC
COSN20097089 482 COSMIC
COSN20097095 684 COSMIC
COSN20097100 687 COSMIC
COSN395033 704 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs767034581 2 dbSNP
rs774921242 3 dbSNP
rs763727990 4 dbSNP
rs1355114264 6 dbSNP
rs1177418875 8 dbSNP
rs1445762141 10 dbSNP
rs753720633 12 dbSNP
rs374184321 15 dbSNP
rs758400671 17 dbSNP
rs910316382 17 dbSNP
rs571892205 18 dbSNP
rs1302329036 21 dbSNP
rs1342188749 22 dbSNP
rs1202714388 26 dbSNP
rs146624124 31 dbSNP
rs758365393 32 dbSNP
rs1437817655 35 dbSNP
rs1040257312 37 dbSNP
rs1255330221 39 dbSNP
rs975837448 45 dbSNP
rs1307375381 74 dbSNP
rs918954893 77 dbSNP
rs1222086727 78 dbSNP
rs995928702 89 dbSNP
rs115226301 93 dbSNP
rs575101248 99 dbSNP
rs1322817703 101 dbSNP
rs1221360013 105 dbSNP
rs1401461292 108 dbSNP
rs887831975 112 dbSNP
rs1455176900 116 dbSNP
rs747087749 120 dbSNP
rs888658461 127 dbSNP
rs1157686084 128 dbSNP
rs941549456 135 dbSNP
rs1015363495 145 dbSNP
rs1484219624 146 dbSNP
rs1441156897 147 dbSNP
rs77086164 148 dbSNP
rs894625154 157 dbSNP
rs531379854 164 dbSNP
rs778059092 164 dbSNP
rs1014794346 166 dbSNP
rs2278565 167 dbSNP
rs958868612 167 dbSNP
rs1339756690 168 dbSNP
rs1318931195 169 dbSNP
rs903195102 171 dbSNP
rs374225697 173 dbSNP
rs1415920886 174 dbSNP
rs1032948153 179 dbSNP
rs957247049 187 dbSNP
rs1160926333 194 dbSNP
rs769822936 195 dbSNP
rs1163925277 205 dbSNP
rs1017876814 206 dbSNP
rs181771873 208 dbSNP
rs1489442023 210 dbSNP
rs547320834 211 dbSNP
rs1216396217 214 dbSNP
rs1490569169 216 dbSNP
rs976268696 222 dbSNP
rs566267199 223 dbSNP
rs1355740281 226 dbSNP
rs901736924 229 dbSNP
rs928977105 231 dbSNP
rs931831829 234 dbSNP
rs1338418590 262 dbSNP
rs984396521 263 dbSNP
rs1050194840 264 dbSNP
rs1405381152 264 dbSNP
rs1351207933 266 dbSNP
rs910147381 267 dbSNP
rs1404172690 272 dbSNP
rs887601622 284 dbSNP
rs1172277318 285 dbSNP
rs1228287226 287 dbSNP
rs1422170236 288 dbSNP
rs1193337276 295 dbSNP
rs540092930 298 dbSNP
rs941641052 302 dbSNP
rs1480987871 305 dbSNP
rs1056048843 306 dbSNP
rs894669578 310 dbSNP
rs1229585542 313 dbSNP
rs897860595 324 dbSNP
rs140179336 327 dbSNP
rs1273795505 332 dbSNP
rs570293668 338 dbSNP
rs537639266 341 dbSNP
rs1046237243 356 dbSNP
rs903247468 363 dbSNP
rs1277512314 370 dbSNP
rs1223853768 380 dbSNP
rs746497208 380 dbSNP
rs368599836 390 dbSNP
rs998870591 392 dbSNP
rs78526804 393 dbSNP
rs1463627954 398 dbSNP
rs1398690004 399 dbSNP
rs1201881066 402 dbSNP
rs567712231 404 dbSNP
rs1427688693 406 dbSNP
rs1189903734 407 dbSNP
rs377516992 408 dbSNP
rs533097609 410 dbSNP
rs75372830 411 dbSNP
rs775869739 416 dbSNP
rs966277913 417 dbSNP
rs975901385 419 dbSNP
rs1026037549 425 dbSNP
rs1456525668 427 dbSNP
rs376126604 432 dbSNP
rs559756764 432 dbSNP
rs950441987 432 dbSNP
rs1313939600 441 dbSNP
rs1168984048 442 dbSNP
rs923672289 443 dbSNP
rs984488018 446 dbSNP
rs190253660 450 dbSNP
rs1443854583 464 dbSNP
rs908923112 469 dbSNP
rs1336880832 471 dbSNP
rs1359820603 478 dbSNP
rs200852619 480 dbSNP
rs770350443 480 dbSNP
rs1414285293 481 dbSNP
rs56169875 481 dbSNP
rs775224402 481 dbSNP
rs1335390603 482 dbSNP
rs959024686 483 dbSNP
rs773957662 485 dbSNP
rs992160270 486 dbSNP
rs916128815 487 dbSNP
rs375723338 488 dbSNP
rs368969438 490 dbSNP
rs950284705 496 dbSNP
rs1297289161 506 dbSNP
rs1484181666 507 dbSNP
rs1045873888 508 dbSNP
rs924762816 513 dbSNP
rs934754370 517 dbSNP
rs1317298003 520 dbSNP
rs1212472354 523 dbSNP
rs1237485235 551 dbSNP
rs1352610359 582 dbSNP
rs909074441 583 dbSNP
rs1229588660 587 dbSNP
rs941871773 588 dbSNP
rs1301641994 613 dbSNP
rs1447676141 614 dbSNP
rs112346526 615 dbSNP
rs759232969 631 dbSNP
rs545719472 632 dbSNP
rs1002893671 647 dbSNP
rs557626781 648 dbSNP
rs1057176732 651 dbSNP
rs1165510455 661 dbSNP
rs143940341 667 dbSNP
rs1013206493 668 dbSNP
rs1181218983 678 dbSNP
rs543170899 679 dbSNP
rs1261255092 680 dbSNP
rs1202494179 681 dbSNP
rs1488607721 681 dbSNP
rs200792262 683 dbSNP
rs201956483 684 dbSNP
rs369206897 684 dbSNP
rs55947590 684 dbSNP
rs397948972 685 dbSNP
rs55733736 685 dbSNP
rs58035876 685 dbSNP
rs1189081210 690 dbSNP
rs1247217535 692 dbSNP
rs901736277 706 dbSNP
rs997771374 711 dbSNP
rs1426122908 713 dbSNP
rs1319410757 720 dbSNP
rs1026132513 727 dbSNP
rs1174332567 728 dbSNP
rs1341753003 730 dbSNP
rs950551673 733 dbSNP
rs182527034 735 dbSNP
rs78916581 736 dbSNP
rs532935822 737 dbSNP
rs1325050672 739 dbSNP
rs764396089 742 dbSNP
rs1164249331 747 dbSNP
rs1031183287 750 dbSNP
rs1276306968 751 dbSNP
rs1477392794 759 dbSNP
rs1267533307 760 dbSNP
rs990479640 775 dbSNP
rs1211280514 776 dbSNP
rs1367862352 781 dbSNP
rs916163921 783 dbSNP
rs777147149 790 dbSNP
rs1280838102 792 dbSNP
rs975788364 797 dbSNP
rs1330556414 807 dbSNP
rs971703122 808 dbSNP
rs762203947 809 dbSNP
rs561776623 811 dbSNP
rs953041802 817 dbSNP
rs552150121 818 dbSNP
rs1302478748 819 dbSNP
rs1388735983 829 dbSNP
rs924810531 834 dbSNP
rs986493443 836 dbSNP
rs1292988471 854 dbSNP
rs934806676 867 dbSNP
rs1466232728 872 dbSNP
rs765769860 873 dbSNP
rs1402325250 878 dbSNP
rs1168454498 889 dbSNP
rs1445128183 890 dbSNP
rs1464859065 892 dbSNP
rs1377978685 894 dbSNP
rs531803424 894 dbSNP
rs1200821172 898 dbSNP
rs1431064758 901 dbSNP
rs868803949 908 dbSNP
rs1266293269 910 dbSNP
rs1223493178 916 dbSNP
rs1458716917 917 dbSNP
rs1054550396 918 dbSNP
rs909092142 920 dbSNP
rs1197473582 921 dbSNP
rs1197287478 924 dbSNP
rs371981838 928 dbSNP
rs774917154 929 dbSNP
rs749926353 933 dbSNP
rs1256920613 934 dbSNP
rs570357975 935 dbSNP
rs185666556 936 dbSNP
rs539420194 954 dbSNP
rs1379229698 959 dbSNP
rs58035961 968 dbSNP
rs557391745 970 dbSNP
rs1402873801 984 dbSNP
rs1383420214 986 dbSNP
rs1175234278 990 dbSNP
rs151295948 993 dbSNP
rs1174086504 1003 dbSNP
rs374903927 1006 dbSNP
rs1376649932 1016 dbSNP
rs140564811 1022 dbSNP
rs1441223242 1023 dbSNP
rs894516362 1026 dbSNP
rs757958379 1027 dbSNP
rs1403986688 1029 dbSNP
rs765952308 1038 dbSNP
rs1437731396 1043 dbSNP
rs1257507010 1046 dbSNP
rs1202507713 1051 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gauucugguucgGAGGAAGGGa 5'
                      ||||||||| 
Target 5' ------------CUCCUUCCCa 3'
1 - 10
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000306406.4 | 3UTR | CUCCUUCCCAUUCCCUCACCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
215 hsa-miR-4747-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT061689 BTG2 BTG anti-proliferation factor 2 2 2
MIRT062834 BCL7A BCL tumor suppressor 7A 2 2
MIRT079371 CCDC137 coiled-coil domain containing 137 2 2
MIRT081190 MIDN midnolin 2 4
MIRT081724 ZNF507 zinc finger protein 507 2 2
MIRT110565 ZMYND11 zinc finger MYND-type containing 11 2 2
MIRT133724 SKI SKI proto-oncogene 2 4
MIRT146689 MINK1 misshapen like kinase 1 2 2
MIRT150676 SLC27A1 solute carrier family 27 member 1 2 2
MIRT159196 NRBP1 nuclear receptor binding protein 1 2 2
MIRT180865 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT190659 PABPN1 poly(A) binding protein nuclear 1 2 2
MIRT196111 MPRIP myosin phosphatase Rho interacting protein 2 2
MIRT232390 SP1 Sp1 transcription factor 2 2
MIRT331070 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 4
MIRT338632 SHMT2 serine hydroxymethyltransferase 2 2 2
MIRT407441 CTDSP1 CTD small phosphatase 1 2 2
MIRT444276 NKX6-1 NK6 homeobox 1 2 2
MIRT444834 PDE6D phosphodiesterase 6D 2 2
MIRT445452 EXT1 exostosin glycosyltransferase 1 2 2
MIRT445644 NPY4R neuropeptide Y receptor Y4 2 2
MIRT446157 RPL12 ribosomal protein L12 2 2
MIRT446608 HIP1 huntingtin interacting protein 1 2 2
MIRT447108 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT449314 MRO maestro 2 2
MIRT450305 DRAXIN dorsal inhibitory axon guidance protein 2 2
MIRT451245 ZNF444 zinc finger protein 444 2 2
MIRT451714 OLR1 oxidized low density lipoprotein receptor 1 2 2
MIRT451908 ILK integrin linked kinase 2 2
MIRT452183 KIAA1456 KIAA1456 2 2
MIRT452610 REPIN1 replication initiator 1 2 2
MIRT453422 GLG1 golgi glycoprotein 1 2 2
MIRT454006 ALKBH5 alkB homolog 5, RNA demethylase 2 2
MIRT455072 ARHGAP39 Rho GTPase activating protein 39 2 2
MIRT455319 TTLL9 tubulin tyrosine ligase like 9 2 2
MIRT455357 KDM5C lysine demethylase 5C 2 2
MIRT455589 TAF12 TATA-box binding protein associated factor 12 2 2
MIRT455711 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT455860 TMEM254 transmembrane protein 254 2 2
MIRT455919 RAPGEF1 Rap guanine nucleotide exchange factor 1 2 2
MIRT455946 CYP4A22 cytochrome P450 family 4 subfamily A member 22 2 2
MIRT456935 LRP10 LDL receptor related protein 10 2 2
MIRT457223 AP3D1 adaptor related protein complex 3 delta 1 subunit 2 2
MIRT457431 NOL10 nucleolar protein 10 2 2
MIRT457470 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457907 ZNF212 zinc finger protein 212 2 2
MIRT458046 TSEN54 tRNA splicing endonuclease subunit 54 2 2
MIRT458073 RNLS renalase, FAD dependent amine oxidase 2 2
MIRT458234 NXPH3 neurexophilin 3 2 2
MIRT458307 TNFAIP8L3 TNF alpha induced protein 8 like 3 2 2
MIRT458378 ITM2C integral membrane protein 2C 2 2
MIRT458967 ZNF436 zinc finger protein 436 2 2
MIRT459099 CYP4A11 cytochrome P450 family 4 subfamily A member 11 2 2
MIRT459446 TMEM37 transmembrane protein 37 2 2
MIRT459671 VPS37C VPS37C, ESCRT-I subunit 2 2
MIRT460727 ASXL3 additional sex combs like 3, transcriptional regulator 2 2
MIRT460744 SRP14 signal recognition particle 14 2 2
MIRT461531 C14orf1 ergosterol biosynthesis 28 homolog 2 2
MIRT461752 DDX11 DEAD/H-box helicase 11 2 2
MIRT461837 F2RL3 F2R like thrombin or trypsin receptor 3 2 2
MIRT462019 RIF1 replication timing regulatory factor 1 2 2
MIRT462631 PHF5A PHD finger protein 5A 2 2
MIRT462772 ZNF8 zinc finger protein 8 2 2
MIRT463032 ZNF689 zinc finger protein 689 2 2
MIRT463886 WNT7B Wnt family member 7B 2 2
MIRT463995 WDTC1 WD and tetratricopeptide repeats 1 2 2
MIRT464371 URM1 ubiquitin related modifier 1 2 2
MIRT465342 TPM3 tropomyosin 3 2 4
MIRT465515 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT465602 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT465697 TNPO2 transportin 2 2 10
MIRT466988 SSRP1 structure specific recognition protein 1 2 4
MIRT467630 SLC7A5 solute carrier family 7 member 5 2 2
MIRT468132 SH3PXD2A SH3 and PX domains 2A 2 2
MIRT468322 SF3B3 splicing factor 3b subunit 3 2 2
MIRT468502 SESN2 sestrin 2 2 2
MIRT468881 RREB1 ras responsive element binding protein 1 2 2
MIRT469322 RGP1 RGP1 homolog, RAB6A GEF complex partner 1 2 2
MIRT469562 RARA retinoic acid receptor alpha 2 2
MIRT469898 PTRF caveolae associated protein 1 2 2
MIRT470045 PTGFRN prostaglandin F2 receptor inhibitor 2 2
MIRT470068 PTGES2 prostaglandin E synthase 2 2 2
MIRT470238 PRRC2A proline rich coiled-coil 2A 2 2
MIRT470390 PPP1R16B protein phosphatase 1 regulatory subunit 16B 2 2
MIRT470500 PPP1R11 protein phosphatase 1 regulatory inhibitor subunit 11 2 2
MIRT470689 POLR2D RNA polymerase II subunit D 2 2
MIRT470704 POGK pogo transposable element derived with KRAB domain 2 2
MIRT471083 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT472482 NACC2 NACC family member 2 2 2
MIRT473583 MAT2A methionine adenosyltransferase 2A 2 2
MIRT474554 KLHDC3 kelch domain containing 3 2 2
MIRT474651 KLF13 Kruppel like factor 13 2 2
MIRT474843 KHSRP KH-type splicing regulatory protein 2 2
MIRT474934 KCTD15 potassium channel tetramerization domain containing 15 2 2
MIRT475573 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 2 2
MIRT476045 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT476080 GRB2 growth factor receptor bound protein 2 2 2
MIRT476440 GBA2 glucosylceramidase beta 2 2 2
MIRT476764 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT478785 CRTC2 CREB regulated transcription coactivator 2 2 2
MIRT479287 CHAC1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 2 2
MIRT479505 CDH6 cadherin 6 2 2
MIRT479732 CCND1 cyclin D1 2 6
MIRT480352 C5orf24 chromosome 5 open reading frame 24 2 2
MIRT480407 C19orf47 chromosome 19 open reading frame 47 2 2
MIRT480859 BHLHB9 basic helix-loop-helix family member b9 2 2
MIRT481445 ARRB2 arrestin beta 2 2 2
MIRT481732 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT481824 AP2M1 adaptor related protein complex 2 mu 1 subunit 2 2
MIRT482566 ABHD2 abhydrolase domain containing 2 2 2
MIRT482607 ABHD14B abhydrolase domain containing 14B 2 2
MIRT483144 SYCE1L synaptonemal complex central element protein 1 like 2 2
MIRT483214 APOA1 apolipoprotein A1 2 6
MIRT483878 TGIF1 TGFB induced factor homeobox 1 2 2
MIRT483917 SPSB1 splA/ryanodine receptor domain and SOCS box containing 1 2 2
MIRT483939 LENG8 leukocyte receptor cluster member 8 2 4
MIRT484420 SNX19 sorting nexin 19 2 2
MIRT484489 SLC9A1 solute carrier family 9 member A1 2 2
MIRT484612 SIX3 SIX homeobox 3 2 6
MIRT484705 RNF11 ring finger protein 11 2 2
MIRT485107 SHISA6 shisa family member 6 2 2
MIRT485354 MYO1C myosin IC 2 4
MIRT485609 FOSL1 FOS like 1, AP-1 transcription factor subunit 2 4
MIRT487311 GLTSCR1 BRD4 interacting chromatin remodeling complex associated protein 2 2
MIRT487417 CACNB1 calcium voltage-gated channel auxiliary subunit beta 1 2 2
MIRT487695 CDK14 cyclin dependent kinase 14 2 2
MIRT487791 GPR20 G protein-coupled receptor 20 2 4
MIRT488042 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT488058 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT488237 DNLZ DNL-type zinc finger 2 4
MIRT488764 FXYD1 FXYD domain containing ion transport regulator 1 2 2
MIRT489401 TUBB2A tubulin beta 2A class IIa 2 2
MIRT489777 GRINA glutamate ionotropic receptor NMDA type subunit associated protein 1 2 2
MIRT490099 FN3K fructosamine 3 kinase 2 2
MIRT490290 ISL2 ISL LIM homeobox 2 2 2
MIRT490378 LHFPL3 LHFPL tetraspan subfamily member 3 2 2
MIRT491329 GFER growth factor, augmenter of liver regeneration 2 2
MIRT491435 MSX2 msh homeobox 2 2 2
MIRT491769 ZNF385A zinc finger protein 385A 2 2
MIRT491922 WNK2 WNK lysine deficient protein kinase 2 2 2
MIRT491983 UNK unkempt family zinc finger 2 2
MIRT492228 SLC48A1 solute carrier family 48 member 1 2 2
MIRT492404 SDK1 sidekick cell adhesion molecule 1 2 2
MIRT492767 PDGFB platelet derived growth factor subunit B 2 2
MIRT492966 NCS1 neuronal calcium sensor 1 2 2
MIRT493295 LLGL2 LLGL2, scribble cell polarity complex component 2 2
MIRT493650 HDLBP high density lipoprotein binding protein 2 2
MIRT493913 FAM127B retrotransposon Gag like 8A 2 4
MIRT495601 NKX2-5 NK2 homeobox 5 2 2
MIRT496875 AHCYL2 adenosylhomocysteinase like 2 2 2
MIRT498514 MYH14 myosin heavy chain 14 2 2
MIRT499178 RBPJL recombination signal binding protein for immunoglobulin kappa J region like 2 2
MIRT502143 KIF5B kinesin family member 5B 2 8
MIRT502692 CSNK1G1 casein kinase 1 gamma 1 2 4
MIRT508460 HOXB6 homeobox B6 2 4
MIRT510430 ZNF207 zinc finger protein 207 2 6
MIRT511837 GPATCH8 G-patch domain containing 8 2 4
MIRT512368 CPM carboxypeptidase M 2 2
MIRT512506 BTBD19 BTB domain containing 19 2 2
MIRT513065 ANKRD45 ankyrin repeat domain 45 2 2
MIRT513267 SCUBE1 signal peptide, CUB domain and EGF like domain containing 1 2 4
MIRT513575 EVX1 even-skipped homeobox 1 2 2
MIRT515051 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT515790 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT521657 PRKD3 protein kinase D3 2 2
MIRT522679 LUZP1 leucine zipper protein 1 2 6
MIRT528845 RAB32 RAB32, member RAS oncogene family 2 2
MIRT533569 TOR1AIP1 torsin 1A interacting protein 1 2 2
MIRT543738 DHCR7 7-dehydrocholesterol reductase 2 2
MIRT544295 TSPYL1 TSPY like 1 2 2
MIRT544857 MYH2 myosin heavy chain 2 2 4
MIRT557323 HIATL1 major facilitator superfamily domain containing 14B 2 4
MIRT560522 TMEM98 transmembrane protein 98 2 2
MIRT561565 SLC6A9 solute carrier family 6 member 9 2 2
MIRT562374 ERI2 ERI1 exoribonuclease family member 2 2 2
MIRT565780 SEMA6D semaphorin 6D 2 2
MIRT569548 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT569944 PRRT2 proline rich transmembrane protein 2 2 2
MIRT570016 COL1A2 collagen type I alpha 2 chain 2 2
MIRT572163 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT572322 HSPB6 heat shock protein family B (small) member 6 2 2
MIRT573495 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT574139 MARVELD1 MARVEL domain containing 1 2 2
MIRT609449 CCDC149 coiled-coil domain containing 149 2 2
MIRT610619 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT623355 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT629854 ACOX1 acyl-CoA oxidase 1 2 2
MIRT630516 CDC73 cell division cycle 73 2 2
MIRT632535 PSMB2 proteasome subunit beta 2 2 2
MIRT633975 SLC35E2 solute carrier family 35 member E2 2 2
MIRT636408 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT641722 LTBR lymphotoxin beta receptor 2 2
MIRT642661 RGS6 regulator of G protein signaling 6 2 2
MIRT649649 MAST3 microtubule associated serine/threonine kinase 3 2 2
MIRT650367 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT651355 ZBTB40 zinc finger and BTB domain containing 40 2 2
MIRT664840 HUS1 HUS1 checkpoint clamp component 2 2
MIRT667322 MYH9 myosin heavy chain 9 2 2
MIRT670680 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT674922 TRPM6 transient receptor potential cation channel subfamily M member 6 2 2
MIRT675919 CYP51A1 cytochrome P450 family 51 subfamily A member 1 2 2
MIRT676493 GJD3 gap junction protein delta 3 2 2
MIRT680162 ZDHHC20 zinc finger DHHC-type containing 20 2 2
MIRT688008 GSN gelsolin 2 2
MIRT688997 ATP6AP1 ATPase H+ transporting accessory protein 1 2 2
MIRT700337 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT701344 NR4A3 nuclear receptor subfamily 4 group A member 3 2 2
MIRT703519 FKBP15 FK506 binding protein 15 2 2
MIRT703901 EPT1 selenoprotein I 2 2
MIRT705565 ARHGEF18 Rho/Rac guanine nucleotide exchange factor 18 2 2
MIRT709709 DNAJC11 DnaJ heat shock protein family (Hsp40) member C11 2 2
MIRT713108 TMBIM4 transmembrane BAX inhibitor motif containing 4 2 2
MIRT718426 ZNF85 zinc finger protein 85 2 2
MIRT719236 CYSLTR2 cysteinyl leukotriene receptor 2 2 2
MIRT719326 STAC SH3 and cysteine rich domain 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4747 Paclitaxel 36314 NSC125973 approved resistant cell line (A2780)
hsa-miR-4747-5p Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-4747-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4747-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

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