pre-miRNA Information
pre-miRNA hsa-mir-548t   
Genomic Coordinates chr4: 173268160 - 173268233
Description Homo sapiens miR-548t stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-548t-3p
Sequence 46| AAAAACCACAAUUACUUUUGCACCA |70
Evidence Not_experimental
Experiments
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 2 4 + 173268206 29233923 MiREDiBase
A-to-I 3 4 + 173268207 29233923 MiREDiBase
A-to-I 4 4 + 173268208 29233923 MiREDiBase
A-to-I 10 4 + 173268214 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs73872515 5 dbSNP
rs1426966747 6 dbSNP
rs1158401109 21 dbSNP
rs943938928 24 dbSNP
Putative Targets

Gene Information
Gene Symbol DNALI1   
Synonyms P28, dJ423B22.5, hp28
Description dynein axonemal light intermediate chain 1
Transcript NM_003462   
Expression
Putative miRNA Targets on DNALI1
3'UTR of DNALI1
(miRNA target sites are highlighted)
>DNALI1|NM_003462|3'UTR
   1 TAATTTCCACATGATTAATTTCCAACAAGACACTTGGGAGTTATTTACTGTGTTCCTCTGGCAGCCAATAAAATCATCAT
  81 AAGCCCTTTGTAATAAAAAGCTAGTTTCCTGAGTGAACAAGCCATAACCTCCCCTAAACACCACCTAGGTATTTGTTAGA
 161 AGTCACACTATTACTCCAATGTCATCAGACACCTAAGGTCTGCCAGCCAGGCTCCTGGCTGGGCAATGGAAGATGGTGTG
 241 GCCCTGTTAGTCTCCGTGTGTGGCTTACTAGCCAGCCTTGGGAACTGCCAACTCAAATTCTAAGAAAGCCACTGCTTTCT
 321 CATCATCACTCTATACCAATACTTATTTCTGGCCAAATGAATCTGCTTCTCTGCCCCTCAAACTTTTAGTTCACAATTCA
 401 TCTTCTACCTTAACTTGGGCTTCTTGGGCCTCTGGCCTTCCTTACTTAATGTCTTCTTTTCCCTACTCTAATGCATTTCT
 481 AACTCACTTTGGAGCTTTGGTTTTCTAATGTATTATCCCCACTTGCCAGTCAACTGGACCCCTTCCTCCTCGGTTTCAGA
 561 CTGCCTACATTAGGAAACAATGGCAGTCAAACCCATGGCTTTGGAGAAAGTAAATGTTTGCCAGAAAGGAATACTAGTCA
 641 CAGTGGCCTTTGTGAGTTGTCTGCAACTCAGCTCTTCCCCCAGCACAGATCTGTTCCCCTTATCCTGCAGAAAATCAAGC
 721 CCTGACTCTGCACTCCCCGAAGTAGTGATGTTAATTAACAACTGAAGAGGTAACTAAATCTCACATGCAGGTCTAATGAC
 801 TAATAATTGGAGTACGGCTGCTAGACAACTGCATTTTAGTATTTCTCTTCCATTCTCCTGGTTTTGTAGACCCAGAAGAT
 881 TGAATGAGTGACATAAATCTTTAGTTCGGGGCAAGCCAGGGTGGGCTAGGGTGGTAAGCTGGAGGACTTCATCCTTCAGT
 961 TAGGCTGCACAAGTAACATTACCTAAAAGGCACTAACATGCTCAGGTTCCCCAGAAAGAGGCGTAAGAAGGGCCTCTCCT
1041 TAGCAGAGCTTCCACCTGCCATCCGTCTTGGGTTCAGTGAGCTTCAAGGCTCACAATGGAAGCACTGTCATTTCCCCAGA
1121 AAAGCTGTGTTCCCTATGCTGAACACACCATACACATTCTCATCTGGAATCTAAGGAGCAGCTTTTACCCTGATCCAGTA
1201 TCCTGAGGAATTTTAAGCCTCCACTCAAATGACCTGCCTGTGTTGTCATTTCCATGGGAAAGAACTCTTTCCACGAGATC
1281 TGCTAGTTCCAGGCCTCTAAGACAGGAACGTATGTGCCATAAGTGGGTCTACTTCACAGACTCAATGAGGCAGAAATTAT
1361 TGTAGTTTTCTCCTATTTCTTCTGCACCCAACTTTCTCCTTGTATTTCAAAGGCCAGGCCATGTACACTAACGTCCTTGA
1441 AATTTGCAGTTCTGTATGCTTCTATTCCAAATCATTCATTACCAATAAAAACGAAATACCACCCTTTCCATTTTATAGAC
1521 CTCATCCCCTATTTCTGTCAGACAGTTATATGACAGGGTGACTGTGGAACCTCTTAGTTCATCCAAAGTCTACCTGAAGT
1601 GCTAGACTTTCAGACTCTTATCACTGAAATCCTTAAGGTTGAGGAGGCTTTATTTCCCTAGCACTGGTGAAGGGCTTCAA
1681 CTGTCAAACCTCAGAACAAATGCATTAGGGCCTTAGAAATGTCAATGGGGCAGGAAGAAAACACAATTTCTAACTGCCTG
1761 TTTTTGTATAATTTAATAAAAACCTTTTAAACATTAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' accaCGUUUUCAUUAACACCAAAAa 5'
              |||:|| | ||||| ||||| 
Target 5' tgagGCAGAAATTATTGTAGTTTTc 3'
1346 - 1370 153.00 -11.40
2
miRNA  3' accacguuuuCAUUAACACCAAAAa 5'
                    | |: | ||||||| 
Target 5' aactcactttGGAGCTTTGGTTTTc 3'
481 - 505 147.00 -7.80
3
miRNA  3' acCACGUUUUCAUUAACACCAAAaa 5'
            | |||| :| |:   |||| |  
Target 5' ctGGGCAATGGAAG--ATGGTGTgg 3'
219 - 241 103.00 -11.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30193061 13 COSMIC
COSN30491953 14 COSMIC
COSN163046 35 COSMIC
COSN31589235 49 COSMIC
COSN13542389 72 COSMIC
COSN26564273 101 COSMIC
COSN31527259 169 COSMIC
COSN27964466 256 COSMIC
COSN21085053 443 COSMIC
COSN21081961 454 COSMIC
COSN1103865 816 COSMIC
COSN18725467 1633 COSMIC
COSN30509251 1655 COSMIC
COSN27155209 1693 COSMIC
COSN30504008 1693 COSMIC
COSN31491415 1718 COSMIC
COSN30468230 1728 COSMIC
COSN30468239 1729 COSMIC
COSN31516573 1738 COSMIC
COSN24298306 1755 COSMIC
COSN30128628 1758 COSMIC
COSN26973788 1786 COSMIC
COSM281419 1795 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1191232262 3 dbSNP
rs1394108451 9 dbSNP
rs373705993 10 dbSNP
rs1463025756 11 dbSNP
rs552988940 11 dbSNP
rs768697801 12 dbSNP
rs776688516 26 dbSNP
rs1322134207 31 dbSNP
rs761742495 34 dbSNP
rs6619 35 dbSNP
rs747168535 36 dbSNP
rs1229151153 37 dbSNP
rs1302686892 44 dbSNP
rs138654616 45 dbSNP
rs1474768799 50 dbSNP
rs1028033713 51 dbSNP
rs534252911 55 dbSNP
rs555320804 56 dbSNP
rs955277113 63 dbSNP
rs573772425 68 dbSNP
rs1337249790 73 dbSNP
rs1015706905 77 dbSNP
rs544217336 78 dbSNP
rs1008094195 80 dbSNP
rs955476960 95 dbSNP
rs1040892496 97 dbSNP
rs1462672650 101 dbSNP
rs1372912965 108 dbSNP
rs1377222483 114 dbSNP
rs987329755 116 dbSNP
rs201895069 119 dbSNP
rs1326872828 139 dbSNP
rs1446768605 141 dbSNP
rs562752296 147 dbSNP
rs1228411257 150 dbSNP
rs111345402 158 dbSNP
rs897114198 162 dbSNP
rs1183444116 163 dbSNP
rs1441404786 169 dbSNP
rs1272155344 175 dbSNP
rs577980064 180 dbSNP
rs1197233837 184 dbSNP
rs879005181 190 dbSNP
rs1480736694 191 dbSNP
rs1345732239 204 dbSNP
rs974363818 208 dbSNP
rs1315728050 213 dbSNP
rs755848310 216 dbSNP
rs545029142 218 dbSNP
rs560141244 228 dbSNP
rs112898951 230 dbSNP
rs1281604978 235 dbSNP
rs777264686 238 dbSNP
rs1392001319 240 dbSNP
rs1396065165 254 dbSNP
rs549050861 256 dbSNP
rs187055977 257 dbSNP
rs1163571124 258 dbSNP
rs529467180 266 dbSNP
rs1472082025 272 dbSNP
rs1261455018 294 dbSNP
rs1053195577 295 dbSNP
rs569689793 306 dbSNP
rs1001518095 308 dbSNP
rs1419091798 309 dbSNP
rs1250624055 313 dbSNP
rs1244654450 316 dbSNP
rs764367447 323 dbSNP
rs947387076 330 dbSNP
rs144591452 334 dbSNP
rs756816831 337 dbSNP
rs1209211849 338 dbSNP
rs1354206914 343 dbSNP
rs996653895 354 dbSNP
rs1028084564 360 dbSNP
rs1417782962 360 dbSNP
rs890949036 364 dbSNP
rs1008419119 368 dbSNP
rs1406979950 374 dbSNP
rs1366633364 391 dbSNP
rs1385328090 401 dbSNP
rs148415665 408 dbSNP
rs1403914366 412 dbSNP
rs1383707866 415 dbSNP
rs551364962 426 dbSNP
rs1470261696 427 dbSNP
rs961370072 432 dbSNP
rs1179636282 435 dbSNP
rs566855891 438 dbSNP
rs1481197058 441 dbSNP
rs11586480 444 dbSNP
rs555818499 445 dbSNP
rs1440499800 447 dbSNP
rs190574193 450 dbSNP
rs1304254288 463 dbSNP
rs1197936978 466 dbSNP
rs745758483 470 dbSNP
rs538067341 475 dbSNP
rs1350223295 488 dbSNP
rs1237448115 495 dbSNP
rs1205638406 501 dbSNP
rs1328646274 517 dbSNP
rs1266290225 537 dbSNP
rs1260658215 540 dbSNP
rs12117262 541 dbSNP
rs1274435140 545 dbSNP
rs978998650 550 dbSNP
rs1319625151 552 dbSNP
rs1207283664 553 dbSNP
rs1271718407 559 dbSNP
rs926204675 565 dbSNP
rs936359338 567 dbSNP
rs1429566852 568 dbSNP
rs1171560582 569 dbSNP
rs1476955654 570 dbSNP
rs1243617773 574 dbSNP
rs1193871211 575 dbSNP
rs1464360941 579 dbSNP
rs1193946124 595 dbSNP
rs985131859 596 dbSNP
rs910997329 598 dbSNP
rs1324288248 602 dbSNP
rs943766484 604 dbSNP
rs1217677863 605 dbSNP
rs970271658 611 dbSNP
rs1341971892 623 dbSNP
rs1271107749 635 dbSNP
rs1040777607 650 dbSNP
rs754776981 653 dbSNP
rs201570904 658 dbSNP
rs781457385 668 dbSNP
rs1454119773 677 dbSNP
rs180986291 678 dbSNP
rs1333159640 687 dbSNP
rs1412374827 694 dbSNP
rs1421438458 698 dbSNP
rs1168312065 700 dbSNP
rs868438041 710 dbSNP
rs1448596702 712 dbSNP
rs1364340984 718 dbSNP
rs1185342277 725 dbSNP
rs888350635 726 dbSNP
rs1001968572 731 dbSNP
rs1034345805 739 dbSNP
rs545316950 740 dbSNP
rs928824378 741 dbSNP
rs1273922666 742 dbSNP
rs1228150251 745 dbSNP
rs1340391782 764 dbSNP
rs1317856978 771 dbSNP
rs1390509390 774 dbSNP
rs1247328511 775 dbSNP
rs960216603 780 dbSNP
rs1393548331 785 dbSNP
rs989339204 786 dbSNP
rs1355940746 790 dbSNP
rs1308198988 791 dbSNP
rs913307005 794 dbSNP
rs1368457616 799 dbSNP
rs1429355731 816 dbSNP
rs865826535 817 dbSNP
rs1412930694 818 dbSNP
rs1180218977 820 dbSNP
rs1020299493 834 dbSNP
rs142507180 839 dbSNP
rs978883076 840 dbSNP
rs1043016628 843 dbSNP
rs1482310231 856 dbSNP
rs1306856365 857 dbSNP
rs746056702 861 dbSNP
rs1223933622 866 dbSNP
rs1321674936 866 dbSNP
rs1311142955 867 dbSNP
rs1241861602 879 dbSNP
rs1033710457 895 dbSNP
rs1288653406 897 dbSNP
rs571991078 900 dbSNP
rs542384714 908 dbSNP
rs186080675 909 dbSNP
rs1349242802 910 dbSNP
rs910891830 926 dbSNP
rs943651906 934 dbSNP
rs1412775720 936 dbSNP
rs976510896 942 dbSNP
rs1471714254 959 dbSNP
rs1271265205 971 dbSNP
rs531273234 974 dbSNP
rs1200628211 976 dbSNP
rs1488326274 977 dbSNP
rs190272965 980 dbSNP
rs1218544095 993 dbSNP
rs116232597 998 dbSNP
rs564287126 1000 dbSNP
rs1037198605 1002 dbSNP
rs1348268969 1006 dbSNP
rs888394948 1007 dbSNP
rs896867830 1008 dbSNP
rs1366646184 1011 dbSNP
rs1291770573 1021 dbSNP
rs1432778024 1023 dbSNP
rs1389518453 1024 dbSNP
rs376004365 1024 dbSNP
rs1455662431 1034 dbSNP
rs111993620 1050 dbSNP
rs1176975731 1064 dbSNP
rs533115772 1065 dbSNP
rs551649434 1066 dbSNP
rs1188843408 1068 dbSNP
rs374555753 1072 dbSNP
rs1035943218 1077 dbSNP
rs763032836 1080 dbSNP
rs903264707 1082 dbSNP
rs1000808548 1083 dbSNP
rs1326378638 1088 dbSNP
rs1264695104 1090 dbSNP
rs1233498347 1094 dbSNP
rs1033179231 1102 dbSNP
rs1298876498 1104 dbSNP
rs770932036 1109 dbSNP
rs1365865395 1114 dbSNP
rs1396991752 1114 dbSNP
rs1319738627 1115 dbSNP
rs1460703820 1116 dbSNP
rs988959664 1128 dbSNP
rs913326234 1130 dbSNP
rs11586555 1137 dbSNP
rs1007818254 1145 dbSNP
rs1376094256 1148 dbSNP
rs978802841 1154 dbSNP
rs921960544 1158 dbSNP
rs1450419040 1171 dbSNP
rs35659088 1176 dbSNP
rs1390109904 1179 dbSNP
rs1019178713 1189 dbSNP
rs1463209281 1196 dbSNP
rs1257626781 1197 dbSNP
rs1200712069 1203 dbSNP
rs140350682 1206 dbSNP
rs1253831744 1212 dbSNP
rs1229356458 1217 dbSNP
rs1050145024 1228 dbSNP
rs74587676 1229 dbSNP
rs1393632263 1237 dbSNP
rs567765452 1238 dbSNP
rs943873191 1239 dbSNP
rs144842134 1244 dbSNP
rs1294691394 1250 dbSNP
rs564327970 1263 dbSNP
rs376974645 1266 dbSNP
rs571455377 1269 dbSNP
rs951101006 1275 dbSNP
rs41267317 1276 dbSNP
rs909716361 1281 dbSNP
rs1167321721 1287 dbSNP
rs753149971 1294 dbSNP
rs1001198685 1298 dbSNP
rs1369516680 1298 dbSNP
rs554012740 1303 dbSNP
rs937134604 1306 dbSNP
rs1055736149 1308 dbSNP
rs1253650763 1310 dbSNP
rs3856137 1311 dbSNP
rs1208562016 1314 dbSNP
rs1273611718 1316 dbSNP
rs1202711325 1319 dbSNP
rs950084628 1320 dbSNP
rs1010834840 1322 dbSNP
rs1256760773 1328 dbSNP
rs1485849245 1330 dbSNP
rs1338768255 1334 dbSNP
rs1189775561 1337 dbSNP
rs1417179394 1340 dbSNP
rs1020482252 1343 dbSNP
rs1410638100 1344 dbSNP
rs1041694135 1361 dbSNP
rs1306602606 1362 dbSNP
rs1426894523 1363 dbSNP
rs903317008 1364 dbSNP
rs542621904 1366 dbSNP
rs1426956770 1372 dbSNP
rs1170081351 1373 dbSNP
rs968840533 1380 dbSNP
rs147920255 1386 dbSNP
rs1366189170 1392 dbSNP
rs1029028316 1394 dbSNP
rs1183961328 1400 dbSNP
rs1472731930 1404 dbSNP
rs1250548885 1415 dbSNP
rs1431708461 1417 dbSNP
rs41267319 1420 dbSNP
rs1453046338 1423 dbSNP
rs543111737 1427 dbSNP
rs889303667 1429 dbSNP
rs1354387147 1433 dbSNP
rs1270063932 1434 dbSNP
rs79571917 1440 dbSNP
rs1328779649 1444 dbSNP
rs912485353 1445 dbSNP
rs1315136827 1449 dbSNP
rs1360393781 1453 dbSNP
rs748024387 1460 dbSNP
rs943939150 1461 dbSNP
rs966269532 1462 dbSNP
rs35414964 1467 dbSNP
rs1385573234 1486 dbSNP
rs973046349 1493 dbSNP
rs1457254662 1494 dbSNP
rs918444497 1494 dbSNP
rs931130726 1502 dbSNP
rs41267321 1503 dbSNP
rs951078734 1506 dbSNP
rs1231470802 1515 dbSNP
rs1247040249 1516 dbSNP
rs1279053836 1519 dbSNP
rs1198120939 1525 dbSNP
rs1449828567 1526 dbSNP
rs545324791 1527 dbSNP
rs1249765725 1539 dbSNP
rs1348464955 1540 dbSNP
rs1209459251 1545 dbSNP
rs1464448127 1550 dbSNP
rs905576823 1563 dbSNP
rs937005502 1566 dbSNP
rs1056771756 1574 dbSNP
rs756855562 1577 dbSNP
rs1274598188 1585 dbSNP
rs150068940 1586 dbSNP
rs1367989155 1608 dbSNP
rs1485428405 1608 dbSNP
rs1321731226 1616 dbSNP
rs1435266532 1618 dbSNP
rs1186080391 1619 dbSNP
rs527945865 1620 dbSNP
rs41267323 1627 dbSNP
rs796334853 1630 dbSNP
rs1451350845 1632 dbSNP
rs41267325 1633 dbSNP
rs949970102 1638 dbSNP
rs561062099 1639 dbSNP
rs531879840 1645 dbSNP
rs935972134 1646 dbSNP
rs1189134366 1654 dbSNP
rs1449002633 1659 dbSNP
rs550279607 1673 dbSNP
rs571495473 1683 dbSNP
rs1000288291 1689 dbSNP
rs1246241307 1691 dbSNP
rs1029038468 1707 dbSNP
rs1054563299 1713 dbSNP
rs889180071 1727 dbSNP
rs1289040590 1730 dbSNP
rs113671143 1737 dbSNP
rs1344750413 1741 dbSNP
rs1299065403 1746 dbSNP
rs1228279989 1755 dbSNP
rs145404846 1759 dbSNP
rs1267926052 1761 dbSNP
rs767502354 1762 dbSNP
rs1449525518 1763 dbSNP
rs768881089 1769 dbSNP
rs776967711 1789 dbSNP
rs115648365 1790 dbSNP
rs1452628189 1790 dbSNP
rs756130836 1794 dbSNP
rs778390098 1796 dbSNP
rs565972010 1797 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000296218.7 | 3UTR | CUCUUCCAUUCUCCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
168 hsa-miR-548t-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059365 ANP32E acidic nuclear phosphoprotein 32 family member E 2 2
MIRT072839 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 6
MIRT076945 PCGF2 polycomb group ring finger 2 2 6
MIRT083941 TFAP2C transcription factor AP-2 gamma 2 2
MIRT085401 ETS2 ETS proto-oncogene 2, transcription factor 2 2
MIRT109790 KLHL15 kelch like family member 15 2 2
MIRT114046 AKAP11 A-kinase anchoring protein 11 2 10
MIRT130165 TXNIP thioredoxin interacting protein 2 6
MIRT150013 MIDN midnolin 2 2
MIRT181258 ASH1L ASH1 like histone lysine methyltransferase 2 2
MIRT205594 NCL nucleolin 2 2
MIRT222253 ACTB actin beta 2 4
MIRT245653 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 4
MIRT250947 CDK5R1 cyclin dependent kinase 5 regulatory subunit 1 2 4
MIRT252497 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT271990 ARF1 ADP ribosylation factor 1 2 4
MIRT280804 RNF11 ring finger protein 11 2 2
MIRT293803 FEM1A fem-1 homolog A 2 2
MIRT318231 RREB1 ras responsive element binding protein 1 2 2
MIRT341455 ATP6V0B ATPase H+ transporting V0 subunit b 2 2
MIRT347413 CEBPG CCAAT/enhancer binding protein gamma 2 4
MIRT351860 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT357983 GRPEL2 GrpE like 2, mitochondrial 2 2
MIRT377094 PPP1CB protein phosphatase 1 catalytic subunit beta 2 2
MIRT407303 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT441564 LMOD3 leiomodin 3 2 2
MIRT442364 ZC3H12C zinc finger CCCH-type containing 12C 2 2
MIRT443228 ARL5B ADP ribosylation factor like GTPase 5B 2 2
MIRT443404 HMX3 H6 family homeobox 3 2 2
MIRT446055 NR5A2 nuclear receptor subfamily 5 group A member 2 2 2
MIRT448277 ZNF652 zinc finger protein 652 2 2
MIRT450822 KCNB1 potassium voltage-gated channel subfamily B member 1 2 2
MIRT453016 CCDC115 coiled-coil domain containing 115 2 17
MIRT454463 PPP2R2B protein phosphatase 2 regulatory subunit Bbeta 2 2
MIRT456360 CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 2 2
MIRT460007 DNALI1 dynein axonemal light intermediate chain 1 2 2
MIRT463154 ZNF385A zinc finger protein 385A 2 6
MIRT463766 YPEL2 yippee like 2 2 2
MIRT468310 SFT2D2 SFT2 domain containing 2 2 2
MIRT470668 POLR2D RNA polymerase II subunit D 2 4
MIRT478517 CTTN cortactin 2 2
MIRT480507 C11orf57 chromosome 11 open reading frame 57 2 2
MIRT484718 INHBA inhibin beta A subunit 2 12
MIRT485494 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT487302 SLC38A9 solute carrier family 38 member 9 2 2
MIRT487771 ANKEF1 ankyrin repeat and EF-hand domain containing 1 2 16
MIRT491876 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT494304 CEP120 centrosomal protein 120 2 2
MIRT495396 TRIM24 tripartite motif containing 24 2 2
MIRT495646 CDK1 cyclin dependent kinase 1 2 2
MIRT496665 TMEM237 transmembrane protein 237 2 2
MIRT496837 ZNF460 zinc finger protein 460 2 2
MIRT498638 CHD4 chromodomain helicase DNA binding protein 4 2 10
MIRT503928 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT506063 PPP2R2A protein phosphatase 2 regulatory subunit Balpha 2 2
MIRT506582 MIER3 MIER family member 3 2 4
MIRT506606 MAT2A methionine adenosyltransferase 2A 2 4
MIRT506844 KIF23 kinesin family member 23 2 6
MIRT508536 RPP14 ribonuclease P/MRP subunit p14 2 4
MIRT509669 ZNF354B zinc finger protein 354B 2 10
MIRT511170 MBNL3 muscleblind like splicing regulator 3 2 6
MIRT512147 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT512831 ID4 inhibitor of DNA binding 4, HLH protein 2 6
MIRT514558 XRCC3 X-ray repair cross complementing 3 2 4
MIRT515856 AJAP1 adherens junctions associated protein 1 2 4
MIRT521848 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT525364 SYNM synemin 2 2
MIRT527120 ARHGAP15 Rho GTPase activating protein 15 2 2
MIRT527271 FBLN2 fibulin 2 2 2
MIRT527439 COL4A3 collagen type IV alpha 3 chain 2 2
MIRT527658 CD300E CD300e molecule 2 2
MIRT528334 TBC1D22B TBC1 domain family member 22B 2 2
MIRT529033 EXOC8 exocyst complex component 8 2 2
MIRT529321 PDE5A phosphodiesterase 5A 2 2
MIRT529677 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT529846 SMTN smoothelin 2 2
MIRT530385 ZNF431 zinc finger protein 431 2 2
MIRT530913 GPR85 G protein-coupled receptor 85 2 2
MIRT531794 KDR kinase insert domain receptor 2 2
MIRT532246 KLF2 Kruppel like factor 2 2 4
MIRT532658 CBX7 chromobox 7 2 2
MIRT533630 TMX3 thioredoxin related transmembrane protein 3 2 2
MIRT534811 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT534975 PSD3 pleckstrin and Sec7 domain containing 3 2 2
MIRT536588 ITPKB inositol-trisphosphate 3-kinase B 2 2
MIRT536779 HNRNPD heterogeneous nuclear ribonucleoprotein D 2 2
MIRT538764 CABLES1 Cdk5 and Abl enzyme substrate 1 2 2
MIRT539294 ANGEL2 angel homolog 2 2 2
MIRT539621 SHISA9 shisa family member 9 2 2
MIRT539651 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT540347 OPHN1 oligophrenin 1 2 2
MIRT540413 PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 2 2
MIRT541396 CDC27 cell division cycle 27 2 2
MIRT542916 HSBP1 heat shock factor binding protein 1 2 2
MIRT544710 EIF5A eukaryotic translation initiation factor 5A 2 4
MIRT544998 MFF mitochondrial fission factor 2 4
MIRT553289 TSPAN3 tetraspanin 3 2 2
MIRT553455 TNRC6C trinucleotide repeat containing 6C 2 2
MIRT553782 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT554656 ROBO1 roundabout guidance receptor 1 2 2
MIRT555104 PURB purine rich element binding protein B 2 2
MIRT557235 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT560861 GAL3ST3 galactose-3-O-sulfotransferase 3 2 2
MIRT561545 SON SON DNA binding protein 2 2
MIRT561554 SLMO2 PRELI domain containing 3B 2 2
MIRT563764 ZNF678 zinc finger protein 678 2 2
MIRT565653 SIX4 SIX homeobox 4 2 2
MIRT568080 CELF2 CUGBP Elav-like family member 2 2 2
MIRT568759 MYBL1 MYB proto-oncogene like 1 2 2
MIRT569078 CADM2 cell adhesion molecule 2 2 2
MIRT569509 THYN1 thymocyte nuclear protein 1 2 2
MIRT571268 CDKN2AIP CDKN2A interacting protein 2 2
MIRT571809 PHF19 PHD finger protein 19 2 2
MIRT572554 DKK3 dickkopf WNT signaling pathway inhibitor 3 2 2
MIRT573782 SLC24A4 solute carrier family 24 member 4 2 4
MIRT576441 Ccdc115 coiled-coil domain containing 115 2 10
MIRT576712 Slc30a3 solute carrier family 30 (zinc transporter), member 3 2 3
MIRT608377 PIWIL2 piwi like RNA-mediated gene silencing 2 2 2
MIRT608484 NKTR natural killer cell triggering receptor 2 6
MIRT610186 FAM49A family with sequence similarity 49 member A 2 2
MIRT611631 EDIL3 EGF like repeats and discoidin domains 3 2 2
MIRT613534 TRA2B transformer 2 beta homolog 2 2
MIRT616221 PTPN11 protein tyrosine phosphatase, non-receptor type 11 2 2
MIRT622370 SALL1 spalt like transcription factor 1 2 2
MIRT624371 CDK12 cyclin dependent kinase 12 2 2
MIRT624995 ZNF665 zinc finger protein 665 2 4
MIRT626875 AP3B1 adaptor related protein complex 3 beta 1 subunit 2 2
MIRT627737 RAP2B RAP2B, member of RAS oncogene family 2 4
MIRT628490 ADAT2 adenosine deaminase, tRNA specific 2 2 2
MIRT633647 PLEKHG7 pleckstrin homology and RhoGEF domain containing G7 2 4
MIRT634028 SLC30A3 solute carrier family 30 member 3 2 3
MIRT635923 GLTSCR2 NOP53 ribosome biogenesis factor 2 2
MIRT638287 SERBP1 SERPINE1 mRNA binding protein 1 2 2
MIRT641959 RNF115 ring finger protein 115 2 2
MIRT643573 CTNNA3 catenin alpha 3 2 2
MIRT645180 NOL9 nucleolar protein 9 2 4
MIRT647497 ZNF639 zinc finger protein 639 2 2
MIRT647682 PCK1 phosphoenolpyruvate carboxykinase 1 2 2
MIRT648422 MYOZ3 myozenin 3 2 2
MIRT650113 ZCCHC9 zinc finger CCHC-type containing 9 2 2
MIRT651076 ZNF518B zinc finger protein 518B 2 4
MIRT651415 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT651456 XKR4 XK related 4 2 2
MIRT653619 SLC30A4 solute carrier family 30 member 4 2 2
MIRT653637 SLC30A1 solute carrier family 30 member 1 2 2
MIRT654896 POU2F1 POU class 2 homeobox 1 2 2
MIRT656483 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT658016 GABRA4 gamma-aminobutyric acid type A receptor alpha4 subunit 2 2
MIRT658041 FZD10 frizzled class receptor 10 2 2
MIRT660093 BTBD3 BTB domain containing 3 2 2
MIRT663923 MAGEF1 MAGE family member F1 2 2
MIRT665882 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT669051 CEP128 centrosomal protein 128 2 2
MIRT669711 AAGAB alpha and gamma adaptin binding protein 2 2
MIRT686812 SNX2 sorting nexin 2 2 4
MIRT689883 SOD2 superoxide dismutase 2 2 2
MIRT693274 GLRX2 glutaredoxin 2 2 4
MIRT697056 BCAR1 BCAR1, Cas family scaffolding protein 2 2
MIRT703297 GID4 GID complex subunit 4 homolog 2 2
MIRT704087 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT707719 CDC6 cell division cycle 6 2 2
MIRT708136 GK5 glycerol kinase 5 (putative) 2 2
MIRT709212 KLHL30 kelch like family member 30 2 2
MIRT710062 RWDD2A RWD domain containing 2A 2 2
MIRT712770 POU6F2 POU class 6 homeobox 2 2 2
MIRT715073 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT715387 TADA3 transcriptional adaptor 3 2 2
MIRT717712 NCKAP1 NCK associated protein 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-548t Paclitaxel 36314 NSC125973 approved sensitive cell line (W1)
hsa-mir-548t Cisplatin 5460033 NSC119875 approved sensitive cell line (W1)
hsa-mir-548t Doxorubicin 31703 NSC123127 approved sensitive cell line (W1)
hsa-mir-548t Topotecan 60699 NSC609699 approved sensitive cell line (W1)
hsa-mir-548t Vincristine 5978 approved sensitive cell line (W1)
hsa-miR-548t-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (SW480, HCT-116)
hsa-miR-548t-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-548t-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)

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