miRTarBase - #MIRT460265


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pre-miRNA Information
pre-miRNA hsa-mir-6778   
Genomic Coordinates chr17: 18340814 - 18340886
Description Homo sapiens miR-6778 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6778-3p
Sequence 53| UGCCUCCCUGACAUUCCACAG |73
Evidence Experimental
Experiments Meta-analysis
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
740690 16 ClinVar
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1353338387 1 dbSNP
rs764805351 4 dbSNP
rs1433279807 7 dbSNP
rs753581059 8 dbSNP
rs1196874854 9 dbSNP
rs763775853 13 dbSNP
rs377036954 16 dbSNP
rs1195047122 17 dbSNP
rs1038276042 19 dbSNP
rs952170969 21 dbSNP
Putative Targets

Gene Information
Gene Symbol SLC26A2   
Synonyms D5S1708, DTD, DTDST, EDM4, MST153, MSTP157
Description solute carrier family 26 member 2
Transcript NM_000112   
Expression
Putative miRNA Targets on SLC26A2
3'UTR of SLC26A2
(miRNA target sites are highlighted)		 
>SLC26A2|NM_000112|3'UTR
   1 TTGAGAAGGTAGATAGAAGAATGTCTAGCCAATAGGTTAAAATTTCAAGTGTCCAACATTTCCCAGTTCCACAGTGGGAA
  81 ATTTTGCACACTTGAAATTTTAACCAAGTGGCTAGATATTATTCCTCCTTTGAAGCTAATGGCATTTGTATATACACACT
 161 GCAGCAGAGCTTGTAGCTGGACAGAGTCAAAAAGAAGAAAATACGGTTTCAGGCTTTCTTGCAGATATGAAGTATTCTTG
 241 GAATGCAATAAGTATGTATTGAACTGTACTGTAAAGTAGCTCCAAAACTTAATTACTCTCCTGTTTTAGGGGTTATACAT
 321 TTGGACTGTGCATTCTCCAAGAGATGAAGCGGTGAAGTTGGGATTTACATTGGAAGTGCTGTAGACTTCTTTATGTGGCT
 401 CAGTGGAGAGAGGGAAAGAATGTTGCACCTGCTCTAGTACCATAGGTCAAGAGGCTTCTGGATCACAAAGTCATAACTAG
 481 ACAGGTTTGTTCTTGTAGTTTTCTATCCCCAGTCTTTGCTCCCCAGATGGCAGTAGTTTTTAGTAGGAAAGTGCCATTCC
 561 TGTCCTTAAGGCACAGTCTCATCAGAAGTCTAATACCTGGGCAGGTTTATAACATCCTGAGAGCCAGCCTGACATTAGAC
 641 AGAATACCCTTTGTAATACATTGGAAATTTTTACTCATGCCTTTTTGTTTAGGATAAATAGGTAAGCACAAAGAGCTCTT
 721 CAAAATCAGAAAAAACAATAGGAGTCCTTCCTTGTCTTTTCTGTGATCTCTGTCCTTGTTTCTGAGACTTTCTCTACCAT
 801 TAAGCTCTATTTTAGCTTTCAGTTATTCTAGTTTGTTTCCCATGGAATCTGTCCTAAACTGGTGTTTTTGTCAGTGACAG
 881 TCTTGCCAGTCAGCAATTTCTAACAGCATTTTAAATGAGTTTGATGTACAGTAAATATTGATGACAATGACAGCTTTTAA
 961 CTCTTCAAGTCACCTAAAGCTATTATGCAGGAGGATTTAGAAGTCACATTCATAAAACCCAAGTGCTATGGGTGTATTAT
1041 TCATGATAGCTGGCCCACAGGTCATGAATTGAGGAGGAATTTGCTTTCAAAAAGCAAGAATGTCCAACACTGAAAGTTTA
1121 TAGTTTTATATTTGGACCTTGAAAGGTAAGAAAAAACCAGGTTCTCCAAAGTTAGGAATAGGGAACTAATTTATGAAACA
1201 GCCATCTTAAAAAAAAAAAAAGTAAACTGCAAAAGTACAAAATCATTTTTCAATCTGTTCCCAGTTTCTAAACAATTTTA
1281 AATATTTATGAGAAGCAAACCCTATGTGTAGGGCATCTGTTGGAGTGGGATGCTTTTAGACATATATTAAGTATGTACAT
1361 GTTTAATATGTATATTTAAAATGCATATATATTTTATTATATCTATATTATCCTATATAGATATATGTAACTTAGCTTTA
1441 TTGTTAGCTCCATAAGCTGCCAGTGTTGCTTTTCTGTTGGTAGAGCTCTCCCATTTGGTGACATGGAAAATACCTTTCCA
1521 TTATCACAACAAAGCAGTTGCTCAGTAGAAAGTCTAGATTTCTGTCTTATAGGTGATTTCTGTCTTATAGGTGATTATAA
1601 TCAAGTGTAGGCTTCCTGAATTTTGACATCCTTTTAGAACTTGGGTCTGGAATTCCAGAAATGTTAATTGCTGCTTGTAT
1681 TTGTTCTTGTTTGTTTTTTAGCCAGTATTTGCCCTTTCTATCCAGCCTTATGAATAATAGCAGTAAAATCACAGTATCTT
1761 GGTCAGTCTTTATTTTTTTCCTTTTTTCTTTTTTAAGAGACAGTCATCCAGGCCAGAGTGCAGTTTGATGATAGCTTACT
1841 GAAGCTTCCCACTCCTGGGCTCAAGTTATCCTTCCATTTTGGCCTCCTGAGTAGCTAGACCATAGGTATGCATCACCACA
1921 CCCTGCTAATTTTTTAAATTTTTTTCTAGAGAGAGGGTCTCACTGTGTTGCCCAGGCTGGTCTCAAACTCCAGGCTCAAG
2001 CAATCCTTCAGCCTCAGCCTCCCAGAGTGTTGGGATTACAGGCGTGAGCCACTGCACTTGGCCAAGTTATTTATTTTTAA
2081 TCTCTCTTGCCCTTCTCCCAAGGCAGGCTTAAGTTGAGACTATTATAGGTGTCTAATAACCTGTGACAGAGTAATGAGTA
2161 CATGCTTAAGATGTTATAATTAGCCAACACCAACACAGCAAAAAATATAATTCCAGCCAAAGATTCTGGAAAATCCCTCA
2241 GAAGGAGGGATAACAGGATTTGACCTTTACCAGCGATTTCTGTCCATATGTGGATGTAAACAGTTCTGGAACGTTATGCA
2321 TGCAGTTAGCGAATCCTTGAATTATGTTCTGGTTTGTACTTGTCCCATCCATCCAAACAAGAGATTCTGCTTTTGGTAGC
2401 CATCTGTAGAAACATTTAAGATGTCACTAGAATTTACATTTCATCCTCTCTACTTGGGTTGAGGTTGCCTATACTTGCAT
2481 ATTGTTAAAATGTTTTGGTTGCTGATATTCAGAGGAATGAAACCTGGAACCAAAGCCTAATTTGCCGATAAAAAAACTGT
2561 TTTCGGCCAGGTGCAGTGGCTCATGCCTGTAATCCCAGCACGTTGGGAGGCCGAGGCGGGTGGATCACCTGAAGTCAGGA
2641 GTTCGAGACCATCCTGGCTAACACTGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCGGGGCATGGTGGCACGC
2721 GCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTACTTGAACCCGGGAGGCGGAGGTTGCAGTAAGCAGAGA
2801 TTGTGCCACTGGACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAACAAACAAACAAAAAACTGTTTTCATTTGCT
2881 CTCTTGACCAAAGGATAGGACTTTAGTTCTTTAAGCATTATTTTAAACACTATATTGATACAAAAATATCTTGCTTACTC
2961 TAAACTTTAGAGTCTAAATGAAGCTTTTTCTCAGTACAAGATTCTGAGTATCATAAAATGGTTATTTAATTGAAACGTAG
3041 TGTGGTATACTCTTGATGGTTAGAACTCTTACAGCCTTATTTATTTTTAAGTTTGTTACAGCCAAAGGGTTGGAGTGTGC
3121 CAGTGCACAGGTAGACTAAGGAAAACATTATAGAGGAGTGAAGAGAACAGACCATTGAAAAGACTATTATCTGACCAGCG
3201 GAGGCAGAAAAGAGAGGAACCCAGTTGAATAGGATCCAATCCCTGGTTAGCCTCTACACAATAATAGGGAGACAAGGATT
3281 AGGAGCCATACCTCCCAGAGCAAGGTATCTTTCTAGAGCAAATTTCTCTTTCTAGAAGGGGAGGGTCACAGGGTCACAGA
3361 TTCACCAAAGCTGAAAGGGCTGAGGAGCTCATGGTAGCCTGGGCTGACCTACTCTGGAGCACGGTGTCTTCCTTCTAAAC
3441 TGAGTGACTGTAGTACTATCTGTGCCTCTGATGGTAATAAAACTGACAAGATGTCTAATTTTTTTTTAAGTAGGACCAAA
3521 GGAAAACAAGATTTAGATAGTCTGACTTTGCTTTTGAACAACAGACATTGCAAGTCAAAATTGTTGTCAAATTTACATAT
3601 GGTAAATGATGAACTTTAAAAATGTGTCCAGGTGTTAGATGAGTTCATTAGACTCTTTTAATGCTAATGGCTAGTACGTT
3681 TAAACAAAACAGCAGTTCTCTGCTGCAATATTCCCATTGACCACTTAAATGACCATAAGTGGTCATTTAAGAACATGTTA
3761 GGGTTAGCCCTGATCTGAATATAAAAGTGAGAAAAGGGCTACAGTGCATTTCTTGGTAACTTAAACTGAGTCTTGAAGTT
3841 ATAATGATCCATTCGAGTTCTGTGATCCTTATTGTTCTTAATTGTGTTTCTCTACGTATTGTTACAGATGAGCCATACGT
3921 TTCTTTGTATCAATGTAGACATGACTTCAGATACCTCTGAGGACCTACCCAGCAGTCTAGGACCCTGGGCCAAGTGCTGG
4001 GACTATGGTACTAAATCCAGTAGATGGGCTGTGTAGCAACTCTCCCAGGGAACACACTAGGGTACTTAGGGAGGTGCTTT
4081 GTGGAGCATGTTGAAGCTTTGAGATCTGAGCAGGAGGCAGTGATGTCCCTGGTCTATTCAGGGAAAGATTTCAGTGTGAA
4161 ATGGTAAACATCCAATTGACAGGATTTAGATTTTGCTTAGTTTTTCTGCTTTTTAATGTTTCTATCCCCCATCTCAGTGT
4241 TTTCTTTATCCATCCCAGTGATGCCTTATTTGAAACTGGGCTTAAACTGCAAAAAGAATGAAGTTGGATTTAGGAAGCTG
4321 TTAGATCATTGAGTGGTGTTGAGAGTGAAGTTTCACTAGCAGGGAAGTTTCCTTGAGCCTAAAATAAAAAGAAAAAATTA
4401 AAAAGAATCAGTTTTTTTAATTAAAAAAATAGAAAGCTGTTAGGCTCCTAATTCGTGGGGTTTTTTTTTGTAAAAACAGT
4481 TTAGATAATCCTGAATGCAATCATTAACTTGGTTGCTAATTACAAGAATGAAAATTATAATGGAAAAGGACAAAATAATA
4561 TACCAGCTGGTTTGTTATTATAGTCCGTGTATTAAAATACTATTGAAATACGTTAAAGGTAAATTTTTAAGGTTTAAAAA
4641 AAATTTAGTAACTTACAGGGATGGAGAATTTAGATGTCAGAGGTGGGGAGATTTATTTTTATAAGGTAATTTTTATCCTG
4721 ATAAGGACTTAAAAAAAAGTTTTGCAACTGAAATTTTAAAGTAAACATGTTAAGTACAGTTAAAAAGTAAGCATTGTAGT
4801 AAATAGTGGATTCTCTGGTGTGTATTTTTTATCTCAGTGTTGAAAATTGGAAAAGAATGGACTGAAGTCTAAAAACTGGA
4881 ATAATGAAGGACACTAAATGCCTTTATTGTAGATACTATGTTTGTAAGTCTATAGCTAAGCAACTTAAGCCAAAAAGGTC
4961 TTTCAACTGAAGCTTTAATCAACTTATTTTGGAGATGTTCTCTTCCCTTATCTCATGCGTCATCCCTAAAATAATAAGAT
5041 ACATGGGATCAAATAGCCCTTGCCTTTTCAACACAAATCAGTTGGAAAATTATGGTTTGAGTCCTGTTGCTGCCATGGCT
5121 TCTGTTTCTCAGAAATGAGTGTGTATGAACATACCAATCTATGTAATAGGCTACCTTTTTTTGTCTTCTTTGGAACTTTG
5201 TACACAAACCAAGACAATATCAGGGTGACAGGTGAATGAACTTAAATTCTCAGTCTTGTCTATTCACCAAAAAAGTATAC
5281 TGCCTGTTTTTTCTTTAATTATTCAAGGTTGATGACTTTTAGGAACATGTTTTATACTGTATTTTTTAATTAAAGCAAGT
5361 GCCTTGATGTAATTCCATGTAAATCATTGCTTAACCCTCTTATGGGATGAGGATGAGTTATTAATGTATTGCAGCCTACT
5441 GGAAAGGAGGGGGAGTTGGTTAATAGCAGATACTTTTCTTCTAGAAGCTTATGTTTTATGCTGTTTATTATGTAAGATCC
5521 TGTATGTGTGTTGAGATTTAGAGGTTTCATTTGTTTTGTCTGCTAATAAATTGTTACTCTAATAATAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' gacacCUUACAGUCCCUCCGu 5'
               | | ||: ||||||| 
Target 5' tcccaGCACGTT-GGGAGGCc 3'
 2593 - 2612 147.00 -13.70
2 
miRNA  3' gacACCUUACAGUCCCUCCGu 5'
             | |||   | ||||||| 
Target 5' tacTTGAA--CCCGGGAGGCg 3'
 2762 - 2780 146.00 -14.30
3 
miRNA  3' gacACCUUA-CAGUCCCUCCGu 5'
             | |::|  |:|||||||: 
Target 5' cacTAGGGTACTTAGGGAGGTg 3'
 4055 - 4076 138.00 -19.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
255133 1 ClinVar
352033 54 ClinVar
993708 84 ClinVar
904825 183 ClinVar
906435 205 ClinVar
352034 206 ClinVar
352035 217 ClinVar
904112 221 ClinVar
352036 265 ClinVar
352037 301 ClinVar
352038 331 ClinVar
352039 395 ClinVar
907497 444 ClinVar
352040 454 ClinVar
352041 591 ClinVar
352042 601 ClinVar
904950 694 ClinVar
906544 835 ClinVar
352043 897 ClinVar
352044 939 ClinVar
352045 975 ClinVar
352046 1025 ClinVar
905016 1033 ClinVar
906598 1041 ClinVar
906599 1072 ClinVar
352047 1147 ClinVar
352048 1209 ClinVar
352049 1209 ClinVar
904284 1261 ClinVar
904285 1377 ClinVar
352050 1428 ClinVar
352051 1544 ClinVar
352052 1553 ClinVar
907698 1589 ClinVar
352053 1632 ClinVar
352054 1892 ClinVar
904362 1936 ClinVar
352055 1971 ClinVar
352056 2004 ClinVar
352057 2177 ClinVar
906750 2213 ClinVar
352058 2227 ClinVar
904422 2233 ClinVar
904423 2266 ClinVar
352059 2290 ClinVar
352060 2331 ClinVar
352061 2358 ClinVar
352062 2444 ClinVar
352063 2471 ClinVar
904488 2477 ClinVar
352064 2604 ClinVar
352065 2613 ClinVar
352066 2618 ClinVar
907858 2721 ClinVar
352067 2773 ClinVar
352068 2781 ClinVar
352069 2791 ClinVar
905337 2874 ClinVar
906946 2971 ClinVar
906947 2979 ClinVar
907921 3038 ClinVar
352070 3045 ClinVar
352071 3166 ClinVar
352072 3226 ClinVar
352073 3262 ClinVar
905929 3263 ClinVar
352074 3308 ClinVar
904686 3361 ClinVar
352075 3405 ClinVar
352076 3436 ClinVar
352077 3467 ClinVar
905986 3508 ClinVar
352078 3581 ClinVar
352079 3671 ClinVar
352080 3690 ClinVar
904762 3919 ClinVar
905551 3941 ClinVar
906063 4018 ClinVar
352081 4064 ClinVar
906064 4105 ClinVar
352082 4225 ClinVar
352083 4334 ClinVar
352084 4392 ClinVar
352085 4398 ClinVar
905611 4420 ClinVar
352086 4461 ClinVar
352087 4461 ClinVar
352088 4461 ClinVar
906129 4463 ClinVar
907122 4515 ClinVar
352089 4587 ClinVar
352090 4613 ClinVar
903772 4660 ClinVar
352091 4783 ClinVar
352092 4800 ClinVar
906195 4858 ClinVar
352093 4870 ClinVar
352094 4931 ClinVar
352095 4983 ClinVar
903849 5078 ClinVar
905742 5204 ClinVar
905743 5215 ClinVar
906257 5252 ClinVar
352096 5339 ClinVar
352097 5388 ClinVar
903909 5417 ClinVar
352098 5554 ClinVar
COSN22708895 716 COSMIC
COSN9928589 1048 COSMIC
COSN29037144 1222 COSMIC
COSN29086082 1222 COSMIC
COSN15977015 1595 COSMIC
COSN9411280 1626 COSMIC
COSN9411281 1723 COSMIC
COSN31959963 2645 COSMIC
COSN182090 2970 COSMIC
COSN5591998 3061 COSMIC
COSN29677115 3508 COSMIC
COSN19390540 4089 COSMIC
COSN9411282 4123 COSMIC
COSN6584119 4147 COSMIC
COSN22193988 4461 COSMIC
COSN20102037 4470 COSMIC
COSN2076465 4550 COSMIC
COSN29827073 4650 COSMIC
COSN25127515 4674 COSMIC
COSN24075506 4732 COSMIC
COSN20091281 5216 COSMIC
COSN14747397 5339 COSMIC
COSN14774786 5554 COSMIC
rs17711997 5339 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs61732052 1 dbSNP
rs377375559 9 dbSNP
rs748275663 10 dbSNP
rs766854098 10 dbSNP
rs769986063 13 dbSNP
rs773546058 14 dbSNP
rs775062734 15 dbSNP
rs1409251359 17 dbSNP
rs763101767 19 dbSNP
rs1171507593 20 dbSNP
rs771121032 21 dbSNP
rs998171839 22 dbSNP
rs775182119 26 dbSNP
rs1403525784 30 dbSNP
rs1322730271 33 dbSNP
rs760414785 34 dbSNP
rs1411372287 35 dbSNP
rs1255627363 43 dbSNP
rs1038813518 47 dbSNP
rs886060226 54 dbSNP
rs954088228 56 dbSNP
rs1228256111 60 dbSNP
rs529112280 70 dbSNP
rs1340554120 75 dbSNP
rs143847430 84 dbSNP
rs1393778883 85 dbSNP
rs1401139745 92 dbSNP
rs932757555 114 dbSNP
rs1431423838 120 dbSNP
rs1051193183 126 dbSNP
rs1167891312 128 dbSNP
rs891274631 133 dbSNP
rs562629009 136 dbSNP
rs1173173318 140 dbSNP
rs999027543 147 dbSNP
rs1371520355 148 dbSNP
rs1422096637 151 dbSNP
rs1033105432 153 dbSNP
rs956059188 161 dbSNP
rs1257134189 172 dbSNP
rs1183102270 174 dbSNP
rs770082455 183 dbSNP
rs1272847800 185 dbSNP
rs1392891696 189 dbSNP
rs893413322 193 dbSNP
rs1024164474 194 dbSNP
rs529744947 205 dbSNP
rs115383424 206 dbSNP
rs886060227 217 dbSNP
rs1288625435 220 dbSNP
rs775637237 221 dbSNP
rs1293059000 222 dbSNP
rs753464677 222 dbSNP
rs926914921 226 dbSNP
rs1348418086 229 dbSNP
rs1307247516 236 dbSNP
rs969153746 240 dbSNP
rs1001883031 249 dbSNP
rs1034732914 258 dbSNP
rs1456473326 259 dbSNP
rs930336319 260 dbSNP
rs1245012397 262 dbSNP
rs886060228 265 dbSNP
rs560524828 269 dbSNP
rs146843578 271 dbSNP
rs1356569265 272 dbSNP
rs552470458 277 dbSNP
rs1473661344 279 dbSNP
rs960493031 280 dbSNP
rs1181623477 285 dbSNP
rs1286641028 290 dbSNP
rs907658315 297 dbSNP
rs757369599 298 dbSNP
rs570796999 301 dbSNP
rs1184535272 305 dbSNP
rs552562764 313 dbSNP
rs1333531752 320 dbSNP
rs1268145055 327 dbSNP
rs1229686852 329 dbSNP
rs191884433 331 dbSNP
rs1436986982 342 dbSNP
rs1188442883 343 dbSNP
rs934205916 345 dbSNP
rs1321537642 346 dbSNP
rs1370335635 351 dbSNP
rs1422818563 386 dbSNP
rs370711127 390 dbSNP
rs1160071611 392 dbSNP
rs1050012102 394 dbSNP
rs140641532 395 dbSNP
rs932656670 401 dbSNP
rs568578594 409 dbSNP
rs1000234877 411 dbSNP
rs1361710384 412 dbSNP
rs1478579920 418 dbSNP
rs1051142063 426 dbSNP
rs535585042 429 dbSNP
rs1468473013 433 dbSNP
rs934808344 435 dbSNP
rs1463146031 436 dbSNP
rs891909766 437 dbSNP
rs1219402291 438 dbSNP
rs1346861190 442 dbSNP
rs1272799356 443 dbSNP
rs115977282 444 dbSNP
rs1365922878 446 dbSNP
rs886060229 454 dbSNP
rs774903038 455 dbSNP
rs1437431369 464 dbSNP
rs1386491974 467 dbSNP
rs34679657 467 dbSNP
rs746026192 471 dbSNP
rs971208499 476 dbSNP
rs1317914870 478 dbSNP
rs979957329 485 dbSNP
rs1396262381 486 dbSNP
rs1314417140 496 dbSNP
rs1380020268 508 dbSNP
rs1044666634 518 dbSNP
rs1391383086 519 dbSNP
rs1034306627 520 dbSNP
rs1191002822 545 dbSNP
rs183837786 547 dbSNP
rs951801628 563 dbSNP
rs904835129 566 dbSNP
rs984499223 572 dbSNP
rs1309944905 581 dbSNP
rs1046710 591 dbSNP
rs143723255 601 dbSNP
rs960480268 606 dbSNP
rs975846529 620 dbSNP
rs1483448968 629 dbSNP
rs1015872014 661 dbSNP
rs1201316376 672 dbSNP
rs1359973561 673 dbSNP
rs1245165665 687 dbSNP
rs577187084 688 dbSNP
rs1448846515 692 dbSNP
rs974372860 694 dbSNP
rs1311271280 700 dbSNP
rs934153715 703 dbSNP
rs953994218 711 dbSNP
rs1157483146 720 dbSNP
rs1428314727 724 dbSNP
rs1419407402 730 dbSNP
rs1345029820 738 dbSNP
rs1186719164 740 dbSNP
rs1235429944 740 dbSNP
rs1483263187 741 dbSNP
rs986834397 747 dbSNP
rs1202747127 751 dbSNP
rs1306916456 754 dbSNP
rs1290471160 755 dbSNP
rs148105298 773 dbSNP
rs1304265408 775 dbSNP
rs539435656 776 dbSNP
rs1451397720 784 dbSNP
rs1309360740 786 dbSNP
rs890083724 795 dbSNP
rs935986842 798 dbSNP
rs1378405633 801 dbSNP
rs1054433524 803 dbSNP
rs1306203521 805 dbSNP
rs1312599516 808 dbSNP
rs1166076492 823 dbSNP
rs1406624403 831 dbSNP
rs1410901580 832 dbSNP
rs767822866 835 dbSNP
rs914697962 844 dbSNP
rs1010239042 845 dbSNP
rs1253520265 856 dbSNP
rs947599589 863 dbSNP
rs1460176878 870 dbSNP
rs1247243364 872 dbSNP
rs1045007524 876 dbSNP
rs140956049 881 dbSNP
rs1271291439 886 dbSNP
rs1232740896 895 dbSNP
rs886060230 897 dbSNP
rs368618423 901 dbSNP
rs1330158411 919 dbSNP
rs1238879602 920 dbSNP
rs937673870 927 dbSNP
rs1176053069 931 dbSNP
rs150188068 939 dbSNP
rs1294662400 949 dbSNP
rs896226687 962 dbSNP
rs1003889616 970 dbSNP
rs1457279744 974 dbSNP
rs886060231 975 dbSNP
rs1434164303 980 dbSNP
rs1179056923 987 dbSNP
rs1427588108 988 dbSNP
rs1156427067 994 dbSNP
rs1418313268 999 dbSNP
rs1425530156 1008 dbSNP
rs1468982948 1023 dbSNP
rs1192867887 1024 dbSNP
rs8073 1025 dbSNP
rs1252296231 1029 dbSNP
rs188329536 1033 dbSNP
rs1028651567 1035 dbSNP
rs527917165 1045 dbSNP
rs1237105850 1049 dbSNP
rs953982813 1051 dbSNP
rs545967786 1061 dbSNP
rs986780640 1063 dbSNP
rs1439361049 1071 dbSNP
rs1297589956 1072 dbSNP
rs1369479400 1075 dbSNP
rs1006562491 1076 dbSNP
rs956040134 1084 dbSNP
rs564489387 1091 dbSNP
rs138240603 1099 dbSNP
rs989280215 1121 dbSNP
rs1452536803 1122 dbSNP
rs914666454 1123 dbSNP
rs947532848 1131 dbSNP
rs1452309021 1144 dbSNP
rs886060232 1147 dbSNP
rs191718949 1160 dbSNP
rs3172979 1165 dbSNP
rs1189082130 1167 dbSNP
rs550406831 1169 dbSNP
rs927529687 1185 dbSNP
rs1203452728 1205 dbSNP
rs1057328789 1209 dbSNP
rs886060233 1209 dbSNP
rs886060234 1209 dbSNP
rs938963861 1209 dbSNP
rs896131806 1210 dbSNP
rs1024303858 1224 dbSNP
rs923049183 1232 dbSNP
rs955521816 1233 dbSNP
rs1280275202 1234 dbSNP
rs1229699670 1254 dbSNP
rs568364063 1261 dbSNP
rs1381161196 1279 dbSNP
rs1379497784 1297 dbSNP
rs747948445 1303 dbSNP
rs898279748 1306 dbSNP
rs1232322929 1316 dbSNP
rs911392928 1324 dbSNP
rs1202155834 1330 dbSNP
rs1371261757 1338 dbSNP
rs1191167426 1344 dbSNP
rs1427969588 1348 dbSNP
rs995746339 1361 dbSNP
rs1028181479 1377 dbSNP
rs1484895967 1388 dbSNP
rs1279981198 1390 dbSNP
rs1480313773 1394 dbSNP
rs1345025364 1395 dbSNP
rs936243948 1398 dbSNP
rs1055119566 1404 dbSNP
rs1171004001 1408 dbSNP
rs1421178154 1422 dbSNP
rs760907801 1428 dbSNP
rs1019564467 1439 dbSNP
rs1169173951 1441 dbSNP
rs1394306814 1449 dbSNP
rs1167206926 1455 dbSNP
rs955987517 1457 dbSNP
rs1369060494 1460 dbSNP
rs988859570 1488 dbSNP
rs1474380356 1489 dbSNP
rs946087225 1499 dbSNP
rs1257078795 1507 dbSNP
rs1183407580 1515 dbSNP
rs1439899161 1515 dbSNP
rs1022123724 1522 dbSNP
rs968851594 1524 dbSNP
rs886060235 1544 dbSNP
rs1488524893 1548 dbSNP
rs1349889160 1550 dbSNP
rs143723917 1553 dbSNP
rs1230916903 1557 dbSNP
rs1301201283 1558 dbSNP
rs907322537 1573 dbSNP
rs1333752660 1581 dbSNP
rs1288562997 1584 dbSNP
rs537659797 1589 dbSNP
rs1333723954 1592 dbSNP
rs1328102322 1597 dbSNP
rs1055601217 1601 dbSNP
rs183809843 1607 dbSNP
rs1387216647 1609 dbSNP
rs887623923 1620 dbSNP
rs7717795 1632 dbSNP
rs908141880 1633 dbSNP
rs1417476833 1636 dbSNP
rs1160122366 1648 dbSNP
rs1014856560 1656 dbSNP
rs961697908 1668 dbSNP
rs1364373510 1678 dbSNP
rs1181739003 1680 dbSNP
rs1452753903 1687 dbSNP
rs1212982872 1694 dbSNP
rs1272380800 1695 dbSNP
rs1322394609 1703 dbSNP
rs997221525 1717 dbSNP
rs1030067730 1727 dbSNP
rs953128542 1729 dbSNP
rs1467597974 1738 dbSNP
rs986303139 1739 dbSNP
rs1268404193 1759 dbSNP
rs911355832 1771 dbSNP
rs957780486 1774 dbSNP
rs990410934 1775 dbSNP
rs1244155671 1781 dbSNP
rs1474225668 1782 dbSNP
rs1348286894 1788 dbSNP
rs1185517666 1789 dbSNP
rs1278793879 1789 dbSNP
rs1413961114 1805 dbSNP
rs1373156352 1817 dbSNP
rs186726602 1819 dbSNP
rs1301137224 1823 dbSNP
rs1438835959 1829 dbSNP
rs1425997918 1833 dbSNP
rs111989016 1844 dbSNP
rs752343692 1869 dbSNP
rs1321476519 1871 dbSNP
rs913526981 1877 dbSNP
rs1383057472 1886 dbSNP
rs1158392076 1890 dbSNP
rs1478548142 1891 dbSNP
rs148778566 1892 dbSNP
rs886060236 1892 dbSNP
rs889602802 1896 dbSNP
rs1453269383 1900 dbSNP
rs199561826 1906 dbSNP
rs1008068132 1912 dbSNP
rs1444988187 1915 dbSNP
rs558781341 1921 dbSNP
rs1200878547 1928 dbSNP
rs570621879 1932 dbSNP
rs537754833 1936 dbSNP
rs1045741308 1937 dbSNP
rs1449569140 1939 dbSNP
rs928650171 1957 dbSNP
rs937416193 1960 dbSNP
rs1233391135 1962 dbSNP
rs556396469 1963 dbSNP
rs574365495 1966 dbSNP
rs1324954810 1968 dbSNP
rs147208348 1971 dbSNP
rs1415432406 1977 dbSNP
rs1377581191 1980 dbSNP
rs553480974 1997 dbSNP
rs1172328157 2001 dbSNP
rs886060237 2004 dbSNP
rs1312957875 2005 dbSNP
rs571806880 2006 dbSNP
rs546026822 2020 dbSNP
rs1391316726 2038 dbSNP
rs897768937 2044 dbSNP
rs1187801759 2045 dbSNP
rs997171397 2046 dbSNP
rs757991237 2053 dbSNP
rs1029979396 2065 dbSNP
rs1486533375 2066 dbSNP
rs1217909711 2083 dbSNP
rs1209873098 2093 dbSNP
rs1275000748 2098 dbSNP
rs1216424674 2099 dbSNP
rs1286801892 2102 dbSNP
rs1337482823 2123 dbSNP
rs992990313 2124 dbSNP
rs564346539 2127 dbSNP
rs1214711786 2129 dbSNP
rs1007277394 2132 dbSNP
rs1032542150 2136 dbSNP
rs1445976751 2138 dbSNP
rs962345400 2167 dbSNP
rs1181238650 2170 dbSNP
rs772022436 2177 dbSNP
rs1384033711 2188 dbSNP
rs1440240645 2189 dbSNP
rs1418085919 2192 dbSNP
rs368682878 2194 dbSNP
rs1163496942 2197 dbSNP
rs1476017834 2205 dbSNP
rs919574683 2206 dbSNP
rs772984946 2209 dbSNP
rs777419320 2213 dbSNP
rs1234562161 2215 dbSNP
rs1020482864 2224 dbSNP
rs7722454 2227 dbSNP
rs1399866259 2231 dbSNP
rs1233972792 2233 dbSNP
rs1337270739 2238 dbSNP
rs1291641913 2245 dbSNP
rs760629385 2249 dbSNP
rs1407142273 2260 dbSNP
rs1374465771 2263 dbSNP
rs1300426286 2265 dbSNP
rs943848139 2269 dbSNP
rs543779853 2274 dbSNP
rs1326075094 2275 dbSNP
rs981675373 2276 dbSNP
rs191140997 2287 dbSNP
rs886060238 2290 dbSNP
rs937349326 2295 dbSNP
rs1175250486 2302 dbSNP
rs991583547 2303 dbSNP
rs184264397 2313 dbSNP
rs1240461742 2318 dbSNP
rs1281776282 2319 dbSNP
rs941856906 2321 dbSNP
rs1036226096 2324 dbSNP
rs757184507 2330 dbSNP
rs886060239 2331 dbSNP
rs1349031095 2332 dbSNP
rs1051688774 2333 dbSNP
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rs886060240 2358 dbSNP
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rs1043384434 2363 dbSNP
rs1373302566 2365 dbSNP
rs190751392 2368 dbSNP
rs1001498573 2373 dbSNP
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rs1324819416 2380 dbSNP
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rs1201312864 2396 dbSNP
rs780949916 2403 dbSNP
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rs886060241 2444 dbSNP
rs776123767 2446 dbSNP
rs962536306 2449 dbSNP
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rs967524239 2478 dbSNP
rs1028326035 2504 dbSNP
rs1174532320 2505 dbSNP
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rs1405522826 2516 dbSNP
rs952382579 2531 dbSNP
rs1302137709 2543 dbSNP
rs1392004055 2547 dbSNP
rs185449865 2548 dbSNP
rs1331516382 2550 dbSNP
rs985160175 2550 dbSNP
rs1286704187 2556 dbSNP
rs1334529565 2560 dbSNP
rs981627355 2565 dbSNP
rs780258339 2566 dbSNP
rs1284330315 2592 dbSNP
rs976509332 2602 dbSNP
rs1175502015 2603 dbSNP
rs749507700 2604 dbSNP
rs945871589 2609 dbSNP
rs958732200 2610 dbSNP
rs1488174500 2612 dbSNP
rs28451300 2613 dbSNP
rs1262091934 2614 dbSNP
rs188922059 2618 dbSNP
rs535154211 2619 dbSNP
rs907319752 2622 dbSNP
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rs972145510 2629 dbSNP
rs1293005943 2632 dbSNP
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rs895891326 2644 dbSNP
rs763270928 2645 dbSNP
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rs1374827569 2658 dbSNP
rs1199420044 2661 dbSNP
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rs1014265881 2679 dbSNP
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rs551921195 3074 dbSNP
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rs910396619 3117 dbSNP
rs1217569022 3122 dbSNP
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rs568306253 3312 dbSNP
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rs750259603 3373 dbSNP
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rs1307611402 3386 dbSNP
rs1318543705 3389 dbSNP
rs547241031 3390 dbSNP
rs1288252870 3392 dbSNP
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rs30833 3405 dbSNP
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rs1353604566 3499 dbSNP
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rs76297937 3500 dbSNP
rs180966130 3508 dbSNP
rs1292537345 3514 dbSNP
rs1431201297 3517 dbSNP
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rs1156597080 3530 dbSNP
rs1470004083 3530 dbSNP
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rs1451237193 3560 dbSNP
rs755162585 3567 dbSNP
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rs1389537037 3598 dbSNP
rs1306041289 3599 dbSNP
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rs1323980313 3602 dbSNP
rs142523899 3603 dbSNP
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rs894627111 3609 dbSNP
rs1040639986 3610 dbSNP
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rs1363629323 3635 dbSNP
rs1209528978 3656 dbSNP
rs1038340005 3660 dbSNP
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rs1251621052 3674 dbSNP
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rs989353616 3709 dbSNP
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rs1254972127 3732 dbSNP
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rs1355781440 3763 dbSNP
rs1460455849 3772 dbSNP
rs971746047 3776 dbSNP
rs771989028 3780 dbSNP
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rs1402767869 3790 dbSNP
rs1345960959 3814 dbSNP
rs773777268 3835 dbSNP
rs939064506 3838 dbSNP
rs747470143 3839 dbSNP
rs990973446 3847 dbSNP
rs916356182 3848 dbSNP
rs1190043870 3851 dbSNP
rs1422623614 3853 dbSNP
rs1256039187 3855 dbSNP
rs948885969 3856 dbSNP
rs1049138767 3857 dbSNP
rs1255765251 3867 dbSNP
rs1197554883 3872 dbSNP
rs1335064876 3876 dbSNP
rs1274894825 3878 dbSNP
rs1037842655 3880 dbSNP
rs1339856665 3883 dbSNP
rs1307568325 3896 dbSNP
rs1343902719 3897 dbSNP
rs910672245 3918 dbSNP
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rs12655219 3981 dbSNP
rs1203115710 3997 dbSNP
rs1008940608 4003 dbSNP
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rs902082782 4010 dbSNP
rs1207867539 4026 dbSNP
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rs1010205104 4040 dbSNP
rs1018088591 4046 dbSNP
rs561921065 4057 dbSNP
rs1208917261 4058 dbSNP
rs900615855 4060 dbSNP
rs12655236 4061 dbSNP
rs1274509684 4064 dbSNP
rs886060247 4064 dbSNP
rs1042663626 4068 dbSNP
rs1490629305 4090 dbSNP
rs902809511 4100 dbSNP
rs1372026789 4105 dbSNP
rs1011422495 4113 dbSNP
rs771483230 4117 dbSNP
rs375486346 4123 dbSNP
rs1325732526 4124 dbSNP
rs999873340 4125 dbSNP
rs1267132582 4126 dbSNP
rs1390396219 4137 dbSNP
rs1289803935 4144 dbSNP
rs1422138978 4148 dbSNP
rs1378975625 4157 dbSNP
rs1477499607 4159 dbSNP
rs1157582606 4188 dbSNP
rs1022062360 4190 dbSNP
rs1186730673 4194 dbSNP
rs1379007627 4202 dbSNP
rs777116235 4225 dbSNP
rs1450668252 4227 dbSNP
rs966519286 4229 dbSNP
rs1012686645 4231 dbSNP
rs977944574 4233 dbSNP
rs1285155386 4234 dbSNP
rs1024123792 4237 dbSNP
rs1345727395 4240 dbSNP
rs971271137 4250 dbSNP
rs972349745 4251 dbSNP
rs1026237510 4252 dbSNP
rs1167940585 4253 dbSNP
rs1034939305 4264 dbSNP
rs960633745 4266 dbSNP
rs1330738090 4268 dbSNP
rs952132542 4272 dbSNP
rs984828174 4280 dbSNP
rs1359213204 4289 dbSNP
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rs990528924 4293 dbSNP
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rs1170289382 4297 dbSNP
rs570235763 4308 dbSNP
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rs1270984005 4330 dbSNP
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rs1043000094 4336 dbSNP
rs904140818 4342 dbSNP
rs1444053539 4344 dbSNP
rs750597567 4346 dbSNP
rs973818522 4349 dbSNP
rs1344643161 4361 dbSNP
rs920725627 4362 dbSNP
rs935665172 4364 dbSNP
rs1220885179 4368 dbSNP
rs1338824905 4387 dbSNP
rs150508217 4392 dbSNP
rs1449484447 4396 dbSNP
rs1342746921 4397 dbSNP
rs547302746 4398 dbSNP
rs912171251 4399 dbSNP
rs1248735897 4401 dbSNP
rs565621168 4409 dbSNP
rs944693133 4410 dbSNP
rs1172286860 4412 dbSNP
rs894218763 4412 dbSNP
rs1039006881 4413 dbSNP
rs140200789 4420 dbSNP
rs1024008941 4421 dbSNP
rs1473760175 4431 dbSNP
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rs1243470873 4448 dbSNP
rs906994122 4455 dbSNP
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rs1161578874 4474 dbSNP
rs183662171 4488 dbSNP
rs1238121793 4498 dbSNP
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rs1165283198 4512 dbSNP
rs1406832875 4514 dbSNP
rs1411577966 4518 dbSNP
rs1162517090 4520 dbSNP
rs1401042870 4524 dbSNP
rs1238938100 4525 dbSNP
rs780186716 4526 dbSNP
rs1319283003 4531 dbSNP
rs964725806 4536 dbSNP
rs1433086724 4543 dbSNP
rs1237744677 4551 dbSNP
rs1222812481 4553 dbSNP
rs1319986928 4558 dbSNP
rs1012594412 4561 dbSNP
rs1023258943 4564 dbSNP
rs945529269 4569 dbSNP
rs1455118050 4576 dbSNP
rs1310867632 4581 dbSNP
rs886060250 4587 dbSNP
rs962697853 4588 dbSNP
rs936955654 4590 dbSNP
rs1224713808 4595 dbSNP
rs973808542 4601 dbSNP
rs918380682 4605 dbSNP
rs1347847434 4612 dbSNP
rs886060251 4613 dbSNP
rs894104134 4622 dbSNP
rs983649954 4625 dbSNP
rs1045880635 4626 dbSNP
rs906989609 4627 dbSNP
rs912061146 4634 dbSNP
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rs1489580481 4636 dbSNP
rs944954358 4637 dbSNP
rs1221260245 4639 dbSNP
rs1039697993 4645 dbSNP
rs537158526 4650 dbSNP
rs887620675 4657 dbSNP
rs143908264 4660 dbSNP
rs1470443734 4666 dbSNP
rs1160117603 4684 dbSNP
rs879682176 4694 dbSNP
rs1405448691 4700 dbSNP
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rs574194280 4706 dbSNP
rs1274075904 4725 dbSNP
rs1400327181 4731 dbSNP
rs964674341 4731 dbSNP
rs972411050 4731 dbSNP
rs946753621 4732 dbSNP
rs1344744768 4737 dbSNP
rs1176873453 4747 dbSNP
rs1435172383 4751 dbSNP
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rs902634703 4778 dbSNP
rs886060252 4783 dbSNP
rs1406976028 4789 dbSNP
rs1478331874 4789 dbSNP
rs999577291 4795 dbSNP
rs72832119 4800 dbSNP
rs925448046 4810 dbSNP
rs761387986 4814 dbSNP
rs1256113705 4816 dbSNP
rs868302693 4819 dbSNP
rs552095539 4831 dbSNP
rs1012130097 4834 dbSNP
rs1277425536 4848 dbSNP
rs1024005879 4854 dbSNP
rs1219016509 4856 dbSNP
rs1342078685 4861 dbSNP
rs962370486 4863 dbSNP
rs1399399492 4870 dbSNP
rs368872246 4870 dbSNP
rs188672399 4880 dbSNP
rs1467606896 4886 dbSNP
rs578249923 4892 dbSNP
rs1340437628 4912 dbSNP
rs1357678370 4919 dbSNP
rs1443483139 4925 dbSNP
rs1191912871 4931 dbSNP
rs79521091 4931 dbSNP
rs1428488131 4933 dbSNP
rs74589369 4983 dbSNP
rs1183124822 4988 dbSNP
rs1227471104 4991 dbSNP
rs756023046 4993 dbSNP
rs1263341163 4997 dbSNP
rs1481950056 4998 dbSNP
rs1047953800 5008 dbSNP
rs1201253150 5011 dbSNP
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rs1006067219 5016 dbSNP
rs575500014 5019 dbSNP
rs1183887631 5020 dbSNP
rs1397867781 5028 dbSNP
rs1038963017 5035 dbSNP
rs1231031361 5037 dbSNP
rs1472125529 5041 dbSNP
rs1019074375 5047 dbSNP
rs1402694953 5054 dbSNP
rs543128334 5056 dbSNP
rs966618775 5058 dbSNP
rs975014858 5064 dbSNP
rs1461760816 5075 dbSNP
rs1430276243 5078 dbSNP
rs922200344 5079 dbSNP
rs946706111 5091 dbSNP
rs979371743 5094 dbSNP
rs1422567675 5096 dbSNP
rs923961541 5107 dbSNP
rs140674261 5111 dbSNP
rs935377619 5113 dbSNP
rs150032181 5140 dbSNP
rs1178680995 5146 dbSNP
rs868033763 5152 dbSNP
rs540805475 5158 dbSNP
rs145273266 5160 dbSNP
rs1411070137 5163 dbSNP
rs1331450993 5164 dbSNP
rs1488648677 5170 dbSNP
rs533386712 5171 dbSNP
rs1242596022 5173 dbSNP
rs1321047833 5174 dbSNP
rs753665671 5175 dbSNP
rs1240898629 5176 dbSNP
rs1379432153 5178 dbSNP
rs1409575466 5184 dbSNP
rs1284271005 5186 dbSNP
rs1347042486 5189 dbSNP
rs1391189436 5202 dbSNP
rs559269489 5204 dbSNP
rs1391973021 5206 dbSNP
rs533046962 5207 dbSNP
rs997500855 5209 dbSNP
rs1456875129 5218 dbSNP
rs551345290 5222 dbSNP
rs866283534 5224 dbSNP
rs1197527366 5230 dbSNP
rs947918865 5242 dbSNP
rs1385135573 5246 dbSNP
rs569655749 5252 dbSNP
rs898447278 5263 dbSNP
rs1378104833 5271 dbSNP
rs1482661862 5287 dbSNP
rs999595906 5292 dbSNP
rs1032846140 5297 dbSNP
rs1269287494 5298 dbSNP
rs958190752 5308 dbSNP
rs1490171347 5309 dbSNP
rs1457453683 5315 dbSNP
rs530392889 5335 dbSNP
rs17711997 5339 dbSNP
rs1481551817 5342 dbSNP
rs1217436806 5349 dbSNP
rs1355869508 5353 dbSNP
rs1277837925 5355 dbSNP
rs1197003397 5360 dbSNP
rs1331866735 5369 dbSNP
rs916811846 5370 dbSNP
rs567348765 5388 dbSNP
rs1385404458 5396 dbSNP
rs886778106 5398 dbSNP
rs535283941 5401 dbSNP
rs1007945580 5417 dbSNP
rs1299274237 5422 dbSNP
rs1369267019 5439 dbSNP
rs1421004883 5448 dbSNP
rs982783817 5449 dbSNP
rs928297417 5451 dbSNP
rs1019817747 5452 dbSNP
rs1378949818 5453 dbSNP
rs779210779 5456 dbSNP
rs748252863 5462 dbSNP
rs552503579 5475 dbSNP
rs1479948266 5476 dbSNP
rs1263829896 5485 dbSNP
rs1195830271 5487 dbSNP
rs770923583 5493 dbSNP
rs1487264504 5499 dbSNP
rs1322437244 5501 dbSNP
rs908997213 5508 dbSNP
rs553597903 5531 dbSNP
rs1346005066 5532 dbSNP
rs1257940734 5537 dbSNP
rs10476926 5554 dbSNP
rs1345211588 5556 dbSNP
rs1279222373 5562 dbSNP
rs1029129997 5566 dbSNP
rs1229007402 5570 dbSNP
rs1339052558 5580 dbSNP
rs1402473277 5580 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' gacaccuuacagucCCUCCGu 5'
                        |||||| 
Target 5' ------------caGGAGGCu 3'
 		1 - 9
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000286298.4 | 3UTR | CAGGAGGCUGAGGCAGGAGAAUUACUUGAACCCG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
600 hsa-miR-6778-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT182161 POU2F1 POU class 2 homeobox 1 2 2
MIRT250472 NFATC2IP nuclear factor of activated T-cells 2 interacting protein 2 2
MIRT447957 WDR77 WD repeat domain 77 2 2
MIRT451052 NT5C1B 5'-nucleotidase, cytosolic IB 2 2
MIRT451360 UQCR11 ubiquinol-cytochrome c reductase, complex III subunit XI 2 2
MIRT452047 NT5C1B-RDH14 NT5C1B-RDH14 readthrough 2 2
MIRT454691 KIAA1644 KIAA1644 2 2
MIRT457031 S1PR3 sphingosine-1-phosphate receptor 3 2 4
MIRT460265 SLC26A2 solute carrier family 26 member 2 2 2
MIRT460533 TM4SF5 transmembrane 4 L six family member 5 2 2
MIRT461619 PTCD3 pentatricopeptide repeat domain 3 2 2
MIRT482392 AEN apoptosis enhancing nuclease 2 2
MIRT488215 TESK2 testis-specific kinase 2 2 6
MIRT488783 CYTH3 cytohesin 3 2 2
MIRT490404 THY1 Thy-1 cell surface antigen 2 2
MIRT495045 AGTPBP1 ATP/GTP binding protein 1 2 2
MIRT509038 PALM2-AKAP2 PALM2-AKAP2 readthrough 2 2
MIRT509057 AKAP2 A-kinase anchoring protein 2 2 2
MIRT514298 FXYD5 FXYD domain containing ion transport regulator 5 2 4
MIRT514641 GALNT6 polypeptide N-acetylgalactosaminyltransferase 6 2 2
MIRT514875 THOC5 THO complex 5 2 2
MIRT515170 AHI1 Abelson helper integration site 1 2 2
MIRT515719 SEPT14 septin 14 2 4
MIRT516021 A1CF APOBEC1 complementation factor 2 2
MIRT516150 BMP8B bone morphogenetic protein 8b 2 4
MIRT516248 BCAS4 breast carcinoma amplified sequence 4 2 2
MIRT517137 KCTD21 potassium channel tetramerization domain containing 21 2 2
MIRT517793 EFCAB11 EF-hand calcium binding domain 11 2 4
MIRT517885 SSTR2 somatostatin receptor 2 2 2
MIRT517919 F2 coagulation factor II, thrombin 2 6
MIRT518128 C15orf40 chromosome 15 open reading frame 40 2 6
MIRT519202 F2RL3 F2R like thrombin or trypsin receptor 3 2 4
MIRT519496 MAPK13 mitogen-activated protein kinase 13 2 2
MIRT520987 SOCS5 suppressor of cytokine signaling 5 2 2
MIRT521525 QSOX1 quiescin sulfhydryl oxidase 1 2 4
MIRT522850 KIAA1551 KIAA1551 2 2
MIRT523829 FAM126B family with sequence similarity 126 member B 2 2
MIRT524268 CYCS cytochrome c, somatic 2 2
MIRT524601 CACYBP calcyclin binding protein 2 2
MIRT524958 AGO3 argonaute 3, RISC catalytic component 2 4
MIRT526616 NME6 NME/NM23 nucleoside diphosphate kinase 6 2 2
MIRT526933 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT528471 SURF6 surfeit 6 2 2
MIRT529979 TNFAIP8L1 TNF alpha induced protein 8 like 1 2 6
MIRT530571 ABHD15 abhydrolase domain containing 15 2 2
MIRT531752 TXK TXK tyrosine kinase 2 2
MIRT532025 FHDC1 FH2 domain containing 1 2 2
MIRT532646 TAB1 TGF-beta activated kinase 1 (MAP3K7) binding protein 1 2 4
MIRT535013 PRMT7 protein arginine methyltransferase 7 2 4
MIRT535226 PIGV phosphatidylinositol glycan anchor biosynthesis class V 2 2
MIRT537862 EFNA5 ephrin A5 2 2
MIRT537944 DSN1 DSN1 homolog, MIS12 kinetochore complex component 2 4
MIRT540245 RGS17 regulator of G protein signaling 17 2 2
MIRT540647 ZNF514 zinc finger protein 514 2 2
MIRT540802 SLC35F5 solute carrier family 35 member F5 2 4
MIRT542032 PTRF caveolae associated protein 1 2 2
MIRT542351 MED16 mediator complex subunit 16 2 2
MIRT555447 POLR3A RNA polymerase III subunit A 2 2
MIRT557268 HMGB1 high mobility group box 1 2 6
MIRT560833 ZNF786 zinc finger protein 786 2 2
MIRT573347 TRPM3 transient receptor potential cation channel subfamily M member 3 2 2
MIRT575441 Gmps guanine monophosphate synthetase 2 3
MIRT576284 Cd59a CD59a antigen 1 1
MIRT576421 Sectm1b secreted and transmembrane 1B 1 1
MIRT607409 MCTS1 MCTS1, re-initiation and release factor 2 4
MIRT607719 LIMS1 LIM zinc finger domain containing 1 2 2
MIRT607831 KIAA1919 major facilitator superfamily domain containing 4B 2 2
MIRT608087 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 4
MIRT608314 SYK spleen associated tyrosine kinase 2 4
MIRT609295 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT610637 PIGM phosphatidylinositol glycan anchor biosynthesis class M 2 2
MIRT610662 PHLDA3 pleckstrin homology like domain family A member 3 2 2
MIRT611998 UTP20 UTP20, small subunit processome component 2 2
MIRT613613 FAM185A family with sequence similarity 185 member A 2 2
MIRT613786 RPS6 ribosomal protein S6 2 2
MIRT613829 SPIRE2 spire type actin nucleation factor 2 2 2
MIRT613846 SHB SH2 domain containing adaptor protein B 2 2
MIRT614236 WDR53 WD repeat domain 53 2 4
MIRT615156 SPIB Spi-B transcription factor 2 2
MIRT615945 SORD sorbitol dehydrogenase 2 2
MIRT616591 KLHL9 kelch like family member 9 2 2
MIRT618124 LACTB lactamase beta 2 2
MIRT618453 ZFP30 ZFP30 zinc finger protein 2 4
MIRT618690 CAMK1D calcium/calmodulin dependent protein kinase ID 2 2
MIRT618905 CDK9 cyclin dependent kinase 9 2 2
MIRT619052 TTC4 tetratricopeptide repeat domain 4 2 2
MIRT619257 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT619391 RSPH3 radial spoke head 3 homolog 2 2
MIRT619446 ZNF517 zinc finger protein 517 2 2
MIRT619655 CORO2A coronin 2A 2 4
MIRT619692 AGMO alkylglycerol monooxygenase 2 2
MIRT620127 ZNF283 zinc finger protein 283 2 2
MIRT620628 UBXN7 UBX domain protein 7 2 2
MIRT620885 ANO7 anoctamin 7 2 2
MIRT621043 PPP2R3A protein phosphatase 2 regulatory subunit B''alpha 2 2
MIRT621085 WDR12 WD repeat domain 12 2 2
MIRT621127 EMC7 ER membrane protein complex subunit 7 2 4
MIRT621159 RTTN rotatin 2 2
MIRT621419 PNPLA3 patatin like phospholipase domain containing 3 2 2
MIRT621915 SYT7 synaptotagmin 7 2 2
MIRT621963 STRIP2 striatin interacting protein 2 2 2
MIRT622100 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT622182 SLC7A14 solute carrier family 7 member 14 2 2
MIRT622255 SLC22A9 solute carrier family 22 member 9 2 2
MIRT622697 PLEKHO1 pleckstrin homology domain containing O1 2 2
MIRT622871 PDE12 phosphodiesterase 12 2 4
MIRT623029 OCIAD2 OCIA domain containing 2 2 2
MIRT623200 MTSS1L MTSS1L, I-BAR domain containing 2 2
MIRT623513 KCNK3 potassium two pore domain channel subfamily K member 3 2 2
MIRT623768 GPR37L1 G protein-coupled receptor 37 like 1 2 2
MIRT623798 GK5 glycerol kinase 5 (putative) 2 4
MIRT624099 DNAJC16 DnaJ heat shock protein family (Hsp40) member C16 2 2
MIRT624222 CXorf21 chromosome X open reading frame 21 2 2
MIRT624450 CALCOCO2 calcium binding and coiled-coil domain 2 2 2
MIRT625014 TMIGD2 transmembrane and immunoglobulin domain containing 2 2 2
MIRT625248 SLC35A3 solute carrier family 35 member A3 2 2
MIRT625373 IRGQ immunity related GTPase Q 2 2
MIRT625519 PGBD4 piggyBac transposable element derived 4 2 2
MIRT625524 FGFR1 fibroblast growth factor receptor 1 2 2
MIRT625769 RBM3 RNA binding motif (RNP1, RRM) protein 3 2 4
MIRT626056 AP3M1 adaptor related protein complex 3 mu 1 subunit 2 2
MIRT626249 RBM43 RNA binding motif protein 43 2 2
MIRT626802 TTPAL alpha tocopherol transfer protein like 2 2
MIRT627396 TMEM170A transmembrane protein 170A 2 2
MIRT627649 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT627967 NIPAL1 NIPA like domain containing 1 2 2
MIRT628119 HRK harakiri, BCL2 interacting protein 2 2
MIRT628267 DDX19B DEAD-box helicase 19B 2 2
MIRT628748 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT629652 NDUFV3 NADH:ubiquinone oxidoreductase subunit V3 2 2
MIRT629663 FPR2 formyl peptide receptor 2 2 2
MIRT630089 ATG14 autophagy related 14 2 2
MIRT630098 DCAF10 DDB1 and CUL4 associated factor 10 2 2
MIRT631155 CCBE1 collagen and calcium binding EGF domains 1 2 2
MIRT631229 C7orf65 chromosome 7 open reading frame 65 2 2
MIRT631247 ABCB5 ATP binding cassette subfamily B member 5 2 2
MIRT631350 ZFP82 ZFP82 zinc finger protein 2 2
MIRT631418 CDNF cerebral dopamine neurotrophic factor 2 2
MIRT631459 FBXO47 F-box protein 47 2 2
MIRT631507 FFAR4 free fatty acid receptor 4 2 2
MIRT631595 ACBD7 acyl-CoA binding domain containing 7 2 2
MIRT631679 NQO2 N-ribosyldihydronicotinamide:quinone reductase 2 2 2
MIRT631729 SF3B1 splicing factor 3b subunit 1 2 2
MIRT631739 NKX2-1 NK2 homeobox 1 2 2
MIRT631891 SLFN13 schlafen family member 13 2 2
MIRT632066 NARS asparaginyl-tRNA synthetase 2 2
MIRT632073 SIGLEC9 sialic acid binding Ig like lectin 9 2 4
MIRT632149 CWC25 CWC25 spliceosome associated protein homolog 2 2
MIRT632203 ZKSCAN1 zinc finger with KRAB and SCAN domains 1 2 2
MIRT632409 SLC30A5 solute carrier family 30 member 5 2 2
MIRT632421 SHROOM4 shroom family member 4 2 2
MIRT632546 PRPF4 pre-mRNA processing factor 4 2 2
MIRT632555 PRPF38A pre-mRNA processing factor 38A 2 2
MIRT632726 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT632809 INO80 INO80 complex subunit 2 2
MIRT633052 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT633099 CBX5 chromobox 5 2 2
MIRT633203 WFDC6 WAP four-disulfide core domain 6 2 4
MIRT633293 SCAMP1 secretory carrier membrane protein 1 2 2
MIRT633341 GRK4 G protein-coupled receptor kinase 4 2 2
MIRT633364 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT633550 ATAD3C ATPase family, AAA domain containing 3C 2 2
MIRT633810 WDR92 WD repeat domain 92 2 2
MIRT634080 APOH apolipoprotein H 2 2
MIRT634287 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT634318 SLC43A2 solute carrier family 43 member 2 2 2
MIRT634352 RNF157 ring finger protein 157 2 2
MIRT634634 HIP1 huntingtin interacting protein 1 2 4
MIRT634880 SENP8 SUMO/sentrin peptidase family member, NEDD8 specific 2 2
MIRT634931 GTF2H2C GTF2H2 family member C 2 2
MIRT635340 RBL1 RB transcriptional corepressor like 1 2 2
MIRT635430 LRP10 LDL receptor related protein 10 2 2
MIRT635459 GBP4 guanylate binding protein 4 2 2
MIRT635497 CCR4 C-C motif chemokine receptor 4 2 2
MIRT635625 CDT1 chromatin licensing and DNA replication factor 1 2 4
MIRT635638 TRMT10B tRNA methyltransferase 10B 2 2
MIRT635746 PIK3C2A phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha 2 2
MIRT635780 NOA1 nitric oxide associated 1 2 2
MIRT635966 TTC31 tetratricopeptide repeat domain 31 2 2
MIRT636018 GNPNAT1 glucosamine-phosphate N-acetyltransferase 1 2 2
MIRT636104 ZCCHC8 zinc finger CCHC-type containing 8 2 2
MIRT636118 YPEL1 yippee like 1 2 2
MIRT636190 TCEB1 elongin C 2 2
MIRT636272 RHBDL2 rhomboid like 2 2 2
MIRT636342 PHAX phosphorylated adaptor for RNA export 2 2
MIRT636577 ENSA endosulfine alpha 2 2
MIRT636783 RAB40B RAB40B, member RAS oncogene family 2 2
MIRT636981 ZNF561 zinc finger protein 561 2 2
MIRT637147 PCDHA6 protocadherin alpha 6 2 4
MIRT637368 ORAI2 ORAI calcium release-activated calcium modulator 2 2 4
MIRT637377 HINFP histone H4 transcription factor 2 2
MIRT637618 ZNF417 zinc finger protein 417 2 2
MIRT637654 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT637700 ZNF439 zinc finger protein 439 2 2
MIRT637720 MYOZ3 myozenin 3 2 2
MIRT637753 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT637984 RRP36 ribosomal RNA processing 36 2 2
MIRT638024 FIG4 FIG4 phosphoinositide 5-phosphatase 2 2
MIRT638194 TAOK1 TAO kinase 1 2 2
MIRT638997 ADO 2-aminoethanethiol dioxygenase 2 2
MIRT639819 TCN2 transcobalamin 2 2 2
MIRT639935 SERPINH1 serpin family H member 1 2 2
MIRT640053 MCL1 MCL1, BCL2 family apoptosis regulator 2 4
MIRT640553 SMCR8 Smith-Magenis syndrome chromosome region, candidate 8 2 2
MIRT640984 VAT1 vesicle amine transport 1 2 2
MIRT641733 TXNL1 thioredoxin like 1 2 2
MIRT642222 RABAC1 Rab acceptor 1 2 2
MIRT642472 C16orf58 chromosome 16 open reading frame 58 2 2
MIRT642511 ORC6 origin recognition complex subunit 6 2 2
MIRT642609 APOPT1 apoptogenic 1, mitochondrial 2 2
MIRT642727 RND2 Rho family GTPase 2 2 2
MIRT643309 TMEM151B transmembrane protein 151B 2 2
MIRT643763 NAGK N-acetylglucosamine kinase 2 2
MIRT643832 RDH13 retinol dehydrogenase 13 2 2
MIRT644047 WWC2 WW and C2 domain containing 2 2 2
MIRT644692 ZNF320 zinc finger protein 320 2 2
MIRT644838 SEC14L4 SEC14 like lipid binding 4 2 2
MIRT645293 ANGPTL7 angiopoietin like 7 2 2
MIRT645559 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT646082 MGST3 microsomal glutathione S-transferase 3 2 2
MIRT646233 FGFR1OP FGFR1 oncogene partner 2 2
MIRT646422 MFAP5 microfibril associated protein 5 2 2
MIRT646443 XRCC2 X-ray repair cross complementing 2 2 2
MIRT646850 SLC35E4 solute carrier family 35 member E4 2 2
MIRT647358 WDR5B WD repeat domain 5B 2 2
MIRT647518 PPIE peptidylprolyl isomerase E 2 2
MIRT647627 PELI3 pellino E3 ubiquitin protein ligase family member 3 2 2
MIRT647642 FAIM2 Fas apoptotic inhibitory molecule 2 2 2
MIRT647783 ASB8 ankyrin repeat and SOCS box containing 8 2 2
MIRT648449 LEAP2 liver enriched antimicrobial peptide 2 2 2
MIRT648669 ZNF626 zinc finger protein 626 2 2
MIRT648859 PDLIM3 PDZ and LIM domain 3 2 2
MIRT648890 TUBGCP5 tubulin gamma complex associated protein 5 2 2
MIRT648918 ZNF551 zinc finger protein 551 2 2
MIRT649205 KIAA1715 lunapark, ER junction formation factor 2 2
MIRT649591 COMMD9 COMM domain containing 9 2 2
MIRT649718 TWSG1 twisted gastrulation BMP signaling modulator 1 2 2
MIRT649941 SIT1 signaling threshold regulating transmembrane adaptor 1 2 2
MIRT650318 TMX4 thioredoxin related transmembrane protein 4 2 2
MIRT650896 ZNF8 zinc finger protein 8 2 2
MIRT650952 QPCTL glutaminyl-peptide cyclotransferase like 2 2
MIRT651020 ZNF699 zinc finger protein 699 2 2
MIRT651217 ZNF225 zinc finger protein 225 2 2
MIRT651525 WNT2B Wnt family member 2B 2 2
MIRT651726 VEZT vezatin, adherens junctions transmembrane protein 2 2
MIRT651814 USP49 ubiquitin specific peptidase 49 2 2
MIRT652331 TMOD3 tropomodulin 3 2 4
MIRT653033 STRN3 striatin 3 2 2
MIRT653259 SOGA3 SOGA family member 3 2 2
MIRT653590 SLC35B3 solute carrier family 35 member B3 2 2
MIRT653608 SLC33A1 solute carrier family 33 member 1 2 2
MIRT653706 SLC25A33 solute carrier family 25 member 33 2 4
MIRT653857 SHE Src homology 2 domain containing E 2 2
MIRT654206 RNF19B ring finger protein 19B 2 4
MIRT654227 RNF165 ring finger protein 165 2 2
MIRT654644 PTAFR platelet activating factor receptor 2 2
MIRT654969 PLEKHA2 pleckstrin homology domain containing A2 2 2
MIRT655228 PEX5L peroxisomal biogenesis factor 5 like 2 2
MIRT655252 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT655508 PAIP2B poly(A) binding protein interacting protein 2B 2 2
MIRT655604 ORMDL3 ORMDL sphingolipid biosynthesis regulator 3 2 2
MIRT656099 MTA3 metastasis associated 1 family member 3 2 2
MIRT656267 MEX3A mex-3 RNA binding family member A 2 2
MIRT656503 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT656960 KIAA0408 KIAA0408 2 2
MIRT657046 KCNH6 potassium voltage-gated channel subfamily H member 6 2 2
MIRT657103 JDP2 Jun dimerization protein 2 2 2
MIRT657108 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT657533 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT657685 GPR155 G protein-coupled receptor 155 2 2
MIRT658007 GALNT10 polypeptide N-acetylgalactosaminyltransferase 10 2 2
MIRT658352 FAM65B RHO family interacting cell polarization regulator 2 2 2
MIRT658693 EMC3 ER membrane protein complex subunit 3 2 2
MIRT659034 DHTKD1 dehydrogenase E1 and transketolase domain containing 1 2 2
MIRT659538 CHCHD5 coiled-coil-helix-coiled-coil-helix domain containing 5 2 2
MIRT659586 CEP135 centrosomal protein 135 2 2
MIRT659743 CCDC30 coiled-coil domain containing 30 2 4
MIRT659799 CAV2 caveolin 2 2 2
MIRT660545 ARHGAP29 Rho GTPase activating protein 29 2 2
MIRT660758 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT660949 ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 2 2
MIRT661120 ZNF841 zinc finger protein 841 2 2
MIRT661520 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT661709 MTO1 mitochondrial tRNA translation optimization 1 2 2
MIRT661720 KLF8 Kruppel like factor 8 2 2
MIRT661754 ATCAY ATCAY, caytaxin 2 4
MIRT661922 MLN motilin 2 2
MIRT662090 ZNF419 zinc finger protein 419 2 2
MIRT662156 ALDH7A1 aldehyde dehydrogenase 7 family member A1 2 2
MIRT662312 ADM2 adrenomedullin 2 2 2
MIRT662335 MYLK3 myosin light chain kinase 3 2 4
MIRT662355 AKAP13 A-kinase anchoring protein 13 2 4
MIRT662522 AIPL1 aryl hydrocarbon receptor interacting protein like 1 2 2
MIRT663531 ZNF70 zinc finger protein 70 2 2
MIRT663572 ZSCAN16 zinc finger and SCAN domain containing 16 2 2
MIRT663631 HM13 histocompatibility minor 13 2 2
MIRT663839 TRIM72 tripartite motif containing 72 2 2
MIRT664021 C9orf139 chromosome 9 open reading frame 139 2 2
MIRT664277 RNMTL1 mitochondrial rRNA methyltransferase 3 2 2
MIRT664374 CYB5A cytochrome b5 type A 2 2
MIRT664651 SECTM1 secreted and transmembrane 1 2 3
MIRT664761 MESDC2 mesoderm development LRP chaperone 2 2
MIRT664923 BHMT2 betaine--homocysteine S-methyltransferase 2 2 4
MIRT665112 DNASE2 deoxyribonuclease 2, lysosomal 2 2
MIRT665473 VSTM4 V-set and transmembrane domain containing 4 2 2
MIRT665806 TMEM168 transmembrane protein 168 2 2
MIRT665872 TGOLN2 trans-golgi network protein 2 2 2
MIRT666504 RNF41 ring finger protein 41 2 2
MIRT666648 RBM48 RNA binding motif protein 48 2 2
MIRT666802 PSMB5 proteasome subunit beta 5 2 2
MIRT667043 PCYOX1 prenylcysteine oxidase 1 2 2
MIRT667424 MFAP2 microfibril associated protein 2 2 2
MIRT667540 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT667675 KPNA6 karyopherin subunit alpha 6 2 2
MIRT667922 IGLON5 IgLON family member 5 2 2
MIRT668143 GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 2 2
MIRT668252 FUT11 fucosyltransferase 11 2 2
MIRT668661 DTWD2 DTW domain containing 2 2 2
MIRT668721 DIP2A disco interacting protein 2 homolog A 2 2
MIRT668743 DIO2 iodothyronine deiodinase 2 2 2
MIRT668926 COL9A2 collagen type IX alpha 2 chain 2 2
MIRT669019 MPZ myelin protein zero 2 2
MIRT669085 CDX2 caudal type homeobox 2 2 2
MIRT669333 BSND barttin CLCNK type accessory beta subunit 2 2
MIRT669567 AKIRIN1 akirin 1 2 2
MIRT669588 AK2 adenylate kinase 2 2 2
MIRT669624 ACSL6 acyl-CoA synthetase long chain family member 6 2 2
MIRT669808 STOML1 stomatin like 1 2 2
MIRT669948 FBXL2 F-box and leucine rich repeat protein 2 2 2
MIRT670483 DCUN1D2 defective in cullin neddylation 1 domain containing 2 2 2
MIRT670605 NPHP1 nephrocystin 1 2 2
MIRT670882 CYTIP cytohesin 1 interacting protein 2 2
MIRT670933 LIPG lipase G, endothelial type 2 2
MIRT671527 RAB27A RAB27A, member RAS oncogene family 2 2
MIRT672637 AAK1 AP2 associated kinase 1 2 2
MIRT672859 C22orf29 retrotransposon Gag like 10 2 2
MIRT672906 KRBA2 KRAB-A domain containing 2 2 2
MIRT673105 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT673524 ADRBK2 G protein-coupled receptor kinase 3 2 2
MIRT673541 DEGS1 delta 4-desaturase, sphingolipid 1 2 2
MIRT673608 HPSE heparanase 2 2
MIRT673754 ZNF333 zinc finger protein 333 2 2
MIRT674341 KCMF1 potassium channel modulatory factor 1 2 2
MIRT674706 FAM73A mitoguardin 1 2 2
MIRT674810 FAM229B family with sequence similarity 229 member B 2 2
MIRT674909 CAPZA2 capping actin protein of muscle Z-line alpha subunit 2 2 2
MIRT675291 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT675396 SVOP SV2 related protein 2 4
MIRT675535 RPL37 ribosomal protein L37 2 2
MIRT675830 DHODH dihydroorotate dehydrogenase (quinone) 2 2
MIRT676086 DPP9 dipeptidyl peptidase 9 2 2
MIRT676130 RSL1D1 ribosomal L1 domain containing 1 2 2
MIRT676169 HIST1H2BJ histone cluster 1 H2B family member j 2 4
MIRT676192 GSTM3 glutathione S-transferase mu 3 2 2
MIRT676289 SLC25A37 solute carrier family 25 member 37 2 2
MIRT676435 PLEKHM3 pleckstrin homology domain containing M3 2 2
MIRT676465 RACGAP1 Rac GTPase activating protein 1 2 2
MIRT676500 GJD3 gap junction protein delta 3 2 2
MIRT676622 CSNK1E casein kinase 1 epsilon 2 2
MIRT676657 LRRC27 leucine rich repeat containing 27 2 2
MIRT676669 ICA1L islet cell autoantigen 1 like 2 4
MIRT676687 LAIR1 leukocyte associated immunoglobulin like receptor 1 2 2
MIRT676697 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT676775 NPHS1 NPHS1, nephrin 2 2
MIRT677087 SMIM15 small integral membrane protein 15 2 2
MIRT677214 RASSF6 Ras association domain family member 6 2 2
MIRT677368 HSPA4L heat shock protein family A (Hsp70) member 4 like 2 2
MIRT677487 GTF2H2 general transcription factor IIH subunit 2 2 2
MIRT677599 PRKX protein kinase, X-linked 2 2
MIRT677687 SCO1 SCO1, cytochrome c oxidase assembly protein 2 2
MIRT677700 GINS2 GINS complex subunit 2 2 2
MIRT677747 GNB4 G protein subunit beta 4 2 2
MIRT677760 GRM6 glutamate metabotropic receptor 6 2 2
MIRT677786 CEACAM5 carcinoembryonic antigen related cell adhesion molecule 5 2 2
MIRT677889 DCP1A decapping mRNA 1A 2 2
MIRT677919 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT677953 CLUAP1 clusterin associated protein 1 2 2
MIRT677987 GATC glutamyl-tRNA amidotransferase subunit C 2 2
MIRT678002 CPM carboxypeptidase M 2 2
MIRT678011 SPIC Spi-C transcription factor 2 2
MIRT678025 SLC1A5 solute carrier family 1 member 5 2 4
MIRT678145 SLC4A4 solute carrier family 4 member 4 2 2
MIRT678355 PPAP2B phospholipid phosphatase 3 2 2
MIRT678470 RNF222 ring finger protein 222 2 2
MIRT678505 LCTL lactase like 2 2
MIRT678525 P2RX7 purinergic receptor P2X 7 2 2
MIRT678532 TMEM78 transmembrane protein 78 2 2
MIRT678638 PDCD4 programmed cell death 4 2 2
MIRT678718 SRCAP Snf2 related CREBBP activator protein 2 2
MIRT678762 CEP76 centrosomal protein 76 2 2
MIRT678873 FAM118A family with sequence similarity 118 member A 2 2
MIRT678903 TTLL12 tubulin tyrosine ligase like 12 2 2
MIRT678922 XPOT exportin for tRNA 2 2
MIRT678979 CERS4 ceramide synthase 4 2 4
MIRT678984 DUXA double homeobox A 2 2
MIRT679071 MANEAL mannosidase endo-alpha like 2 2
MIRT679082 PURB purine rich element binding protein B 2 2
MIRT679091 ZNF655 zinc finger protein 655 2 2
MIRT679103 CD99 CD99 molecule (Xg blood group) 2 2
MIRT679111 NMNAT1 nicotinamide nucleotide adenylyltransferase 1 2 2
MIRT679277 MIPOL1 mirror-image polydactyly 1 2 2
MIRT679351 LRG1 leucine rich alpha-2-glycoprotein 1 2 2
MIRT679362 SIK2 salt inducible kinase 2 2 2
MIRT679374 ZNF91 zinc finger protein 91 2 2
MIRT679377 HIF1AN hypoxia inducible factor 1 alpha subunit inhibitor 2 2
MIRT679416 SLC7A11 solute carrier family 7 member 11 2 4
MIRT679504 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 4
MIRT679597 HILPDA hypoxia inducible lipid droplet associated 2 2
MIRT679633 BRMS1L breast cancer metastasis-suppressor 1 like 2 2
MIRT679699 MTRNR2L5 MT-RNR2-like 5 2 2
MIRT679708 RPL24 ribosomal protein L24 2 2
MIRT679733 UBN2 ubinuclein 2 2 2
MIRT679772 GOLGA2 golgin A2 2 4
MIRT679795 CPE carboxypeptidase E 2 2
MIRT679818 TMEM106B transmembrane protein 106B 2 2
MIRT679861 C21orf59 chromosome 21 open reading frame 59 2 2
MIRT679875 SLC25A51 solute carrier family 25 member 51 2 2
MIRT679888 SNX2 sorting nexin 2 2 2
MIRT679897 FBXO48 F-box protein 48 2 2
MIRT679924 FBLIM1 filamin binding LIM protein 1 2 2
MIRT679947 AS3MT arsenite methyltransferase 2 2
MIRT679979 E2F2 E2F transcription factor 2 2 2
MIRT679987 RUNDC1 RUN domain containing 1 2 2
MIRT680007 ZNF860 zinc finger protein 860 2 2
MIRT680059 CD96 CD96 molecule 2 2
MIRT680075 THAP1 THAP domain containing 1 2 2
MIRT680125 MFSD11 major facilitator superfamily domain containing 11 2 2
MIRT680220 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 2 2
MIRT680392 OXA1L OXA1L, mitochondrial inner membrane protein 2 2
MIRT680425 GATA6 GATA binding protein 6 2 2
MIRT680450 PDE6A phosphodiesterase 6A 2 2
MIRT682767 TMEM120B transmembrane protein 120B 2 2
MIRT683375 ESR2 estrogen receptor 2 2 2
MIRT683482 ZNF7 zinc finger protein 7 2 2
MIRT683616 PCP4L1 Purkinje cell protein 4 like 1 2 2
MIRT683680 MICA MHC class I polypeptide-related sequence A 2 2
MIRT683861 OCIAD1 OCIA domain containing 1 2 2
MIRT683904 PSMB9 proteasome subunit beta 9 2 2
MIRT684069 TLR7 toll like receptor 7 2 2
MIRT684121 CEP104 centrosomal protein 104 2 2
MIRT684175 MOG myelin oligodendrocyte glycoprotein 2 2
MIRT684234 C20orf144 chromosome 20 open reading frame 144 2 2
MIRT684481 GPR137B G protein-coupled receptor 137B 2 2
MIRT684701 LRRD1 leucine rich repeats and death domain containing 1 2 2
MIRT684773 MYO1F myosin IF 2 2
MIRT685187 DCTN5 dynactin subunit 5 2 2
MIRT685235 F2RL1 F2R like trypsin receptor 1 2 2
MIRT685304 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT685571 KCNK6 potassium two pore domain channel subfamily K member 6 2 2
MIRT685616 C12orf49 chromosome 12 open reading frame 49 2 2
MIRT685652 C11orf1 chromosome 11 open reading frame 1 2 2
MIRT685773 ZNF426 zinc finger protein 426 2 2
MIRT685938 PTGIS prostaglandin I2 synthase 2 2
MIRT686096 TNIP3 TNFAIP3 interacting protein 3 2 2
MIRT686148 HS3ST1 heparan sulfate-glucosamine 3-sulfotransferase 1 2 2
MIRT686272 WWC1 WW and C2 domain containing 1 2 2
MIRT686378 UBE2V2 ubiquitin conjugating enzyme E2 V2 2 2
MIRT686470 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT686481 TRIOBP TRIO and F-actin binding protein 2 2
MIRT686905 SGTB small glutamine rich tetratricopeptide repeat containing beta 2 2
MIRT687068 RABGAP1L RAB GTPase activating protein 1 like 2 2
MIRT687241 PDHB pyruvate dehydrogenase E1 beta subunit 2 2
MIRT687394 NSUN4 NOP2/Sun RNA methyltransferase family member 4 2 2
MIRT687455 NKD1 naked cuticle homolog 1 2 2
MIRT687636 LRIF1 ligand dependent nuclear receptor interacting factor 1 2 2
MIRT687829 ISG20L2 interferon stimulated exonuclease gene 20 like 2 2 2
MIRT687850 ISCA2 iron-sulfur cluster assembly 2 2 2
MIRT687919 HOOK3 hook microtubule tethering protein 3 2 2
MIRT688022 GPN2 GPN-loop GTPase 2 2 2
MIRT688116 GEMIN8 gem nuclear organelle associated protein 8 2 2
MIRT688246 FITM2 fat storage inducing transmembrane protein 2 2 2
MIRT688318 FAM151B family with sequence similarity 151 member B 2 2
MIRT688457 DNAJB4 DnaJ heat shock protein family (Hsp40) member B4 2 2
MIRT688669 CPT1A carnitine palmitoyltransferase 1A 2 2
MIRT689058 AGMAT agmatinase 2 2
MIRT689109 ZBTB25 zinc finger and BTB domain containing 25 2 2
MIRT689162 ZNF665 zinc finger protein 665 2 2
MIRT689401 ZNF573 zinc finger protein 573 2 2
MIRT689506 ZNF865 zinc finger protein 865 2 2
MIRT689789 GTF2H3 general transcription factor IIH subunit 3 2 2
MIRT690062 MBD1 methyl-CpG binding domain protein 1 2 2
MIRT690729 IRAK4 interleukin 1 receptor associated kinase 4 2 2
MIRT690975 ZNF578 zinc finger protein 578 2 2
MIRT691316 KIAA1841 KIAA1841 2 2
MIRT691486 FOXRED2 FAD dependent oxidoreductase domain containing 2 2 2
MIRT691516 ZNF682 zinc finger protein 682 2 2
MIRT692060 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT692100 CXorf38 chromosome X open reading frame 38 2 4
MIRT692203 NOL9 nucleolar protein 9 2 2
MIRT692310 RFK riboflavin kinase 2 2
MIRT692372 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT692469 APEX2 apurinic/apyrimidinic endodeoxyribonuclease 2 2 2
MIRT692521 PARD3 par-3 family cell polarity regulator 2 2
MIRT692595 GDF5OS growth differentiation factor 5 opposite strand 2 2
MIRT692777 SYNPO2L synaptopodin 2 like 2 2
MIRT692869 RBM41 RNA binding motif protein 41 2 2
MIRT692964 LGSN lengsin, lens protein with glutamine synthetase domain 2 2
MIRT693346 RNF34 ring finger protein 34 2 2
MIRT693468 ZNF707 zinc finger protein 707 2 2
MIRT693870 COX19 COX19, cytochrome c oxidase assembly factor 2 2
MIRT694047 PRIM1 DNA primase subunit 1 2 2
MIRT694086 KIAA0930 KIAA0930 2 2
MIRT694187 ZNF347 zinc finger protein 347 2 2
MIRT694656 C14orf119 chromosome 14 open reading frame 119 2 2
MIRT694806 STX4 syntaxin 4 2 2
MIRT694927 ANKS4B ankyrin repeat and sterile alpha motif domain containing 4B 2 2
MIRT695607 GATAD1 GATA zinc finger domain containing 1 2 2
MIRT695824 ABCG8 ATP binding cassette subfamily G member 8 2 2
MIRT695965 EIF2B2 eukaryotic translation initiation factor 2B subunit beta 2 2
MIRT696175 GNB5 G protein subunit beta 5 2 2
MIRT696326 FAM153B family with sequence similarity 153 member B 2 2
MIRT696856 UBOX5 U-box domain containing 5 2 2
MIRT696897 C14orf105 coiled-coil domain containing 198 2 2
MIRT696960 SNAP29 synaptosome associated protein 29 2 2
MIRT697241 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697383 ZMAT3 zinc finger matrin-type 3 2 2
MIRT697455 ZC3H4 zinc finger CCCH-type containing 4 2 2
MIRT697892 UBE2B ubiquitin conjugating enzyme E2 B 2 2
MIRT698476 TIMM10 translocase of inner mitochondrial membrane 10 2 2
MIRT698916 SPEM1 spermatid maturation 1 2 2
MIRT699102 SNIP1 Smad nuclear interacting protein 1 2 2
MIRT699347 SLC35E1 solute carrier family 35 member E1 2 2
MIRT699625 SH3BP5 SH3 domain binding protein 5 2 2
MIRT699815 SCN2B sodium voltage-gated channel beta subunit 2 2 2
MIRT700042 RPL14 ribosomal protein L14 2 2
MIRT700499 PTPN4 protein tyrosine phosphatase, non-receptor type 4 2 2
MIRT700748 PLAA phospholipase A2 activating protein 2 2
MIRT700829 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT701291 NUDT3 nudix hydrolase 3 2 2
MIRT701816 MRPL37 mitochondrial ribosomal protein L37 2 2
MIRT702192 LRRC58 leucine rich repeat containing 58 2 2
MIRT703032 HAS2 hyaluronan synthase 2 2 4
MIRT703082 GPRIN3 GPRIN family member 3 2 2
MIRT703572 FEM1A fem-1 homolog A 2 2
MIRT703941 EPB41L1 erythrocyte membrane protein band 4.1 like 1 2 2
MIRT704107 DRAXIN dorsal inhibitory axon guidance protein 2 2
MIRT704188 LDHD lactate dehydrogenase D 2 2
MIRT704576 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT704755 CDKN2AIPNL CDKN2A interacting protein N-terminal like 2 2
MIRT705076 C4orf29 abhydrolase domain containing 18 2 2
MIRT705343 ATP1B3 ATPase Na+/K+ transporting subunit beta 3 2 2
MIRT706018 ZSCAN2 zinc finger and SCAN domain containing 2 2 2
MIRT706035 F2R coagulation factor II thrombin receptor 2 2
MIRT706096 ENTPD4 ectonucleoside triphosphate diphosphohydrolase 4 2 2
MIRT706273 SLC35F6 solute carrier family 35 member F6 2 2
MIRT706338 STAC2 SH3 and cysteine rich domain 2 2 2
MIRT706590 C1RL complement C1r subcomponent like 2 2
MIRT706598 CCS copper chaperone for superoxide dismutase 2 2
MIRT706619 GMPS guanine monophosphate synthase 2 3
MIRT706738 FPGS folylpolyglutamate synthase 2 2
MIRT706828 TUBD1 tubulin delta 1 2 2
MIRT706944 DNAJC18 DnaJ heat shock protein family (Hsp40) member C18 2 2
MIRT707000 ESYT2 extended synaptotagmin 2 2 2
MIRT708270 EGLN2 egl-9 family hypoxia inducible factor 2 2 2
MIRT708362 CDIPT CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 2
MIRT708621 NUDT18 nudix hydrolase 18 2 2
MIRT709067 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT709500 RHOH ras homolog family member H 2 2
MIRT709532 ZBED1 zinc finger BED-type containing 1 2 2
MIRT709566 GYG2 glycogenin 2 2 2
MIRT709669 AJAP1 adherens junctions associated protein 1 2 2
MIRT709881 TRAF1 TNF receptor associated factor 1 2 2
MIRT710627 ASB7 ankyrin repeat and SOCS box containing 7 2 2
MIRT710705 IDH2 isocitrate dehydrogenase (NADP(+)) 2, mitochondrial 2 2
MIRT710825 NLRP12 NLR family pyrin domain containing 12 2 2
MIRT711186 PIGG phosphatidylinositol glycan anchor biosynthesis class G 2 2
MIRT711413 RAB3C RAB3C, member RAS oncogene family 2 2
MIRT711822 MAPK8IP3 mitogen-activated protein kinase 8 interacting protein 3 2 2
MIRT711880 VASP vasodilator stimulated phosphoprotein 2 2
MIRT713329 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT713447 FAM216A family with sequence similarity 216 member A 2 2
MIRT713711 PAOX polyamine oxidase 2 2
MIRT713883 MOB3A MOB kinase activator 3A 2 2
MIRT714302 ZNF454 zinc finger protein 454 2 2
MIRT714607 EXO5 exonuclease 5 2 2
MIRT714917 PPP1R12C protein phosphatase 1 regulatory subunit 12C 2 2
MIRT715790 TBL3 transducin beta like 3 2 2
MIRT715988 ACOT2 acyl-CoA thioesterase 2 2 2
MIRT716409 PDLIM5 PDZ and LIM domain 5 2 2
MIRT718011 METTL15 methyltransferase like 15 2 2
MIRT718089 ABHD12 abhydrolase domain containing 12 2 2
MIRT718179 HLCS holocarboxylase synthetase 2 2
MIRT718186 ZBTB16 zinc finger and BTB domain containing 16 2 2
MIRT718708 ANKRD18A ankyrin repeat domain 18A 2 2
MIRT718869 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT719067 ACOX1 acyl-CoA oxidase 1 2 2
MIRT719775 ZNF236 zinc finger protein 236 2 2
MIRT720526 PTGR2 prostaglandin reductase 2 2 2
MIRT720899 BTBD19 BTB domain containing 19 2 2
MIRT722379 KAZALD1 Kazal type serine peptidase inhibitor domain 1 2 2
MIRT722446 RXFP4 relaxin/insulin like family peptide receptor 4 2 2
MIRT722672 RRM2 ribonucleotide reductase regulatory subunit M2 2 2
MIRT722733 BRMS1 breast cancer metastasis suppressor 1 2 2
MIRT722867 FAM212B family with sequence similarity 212 member B 2 2
MIRT722873 XPNPEP3 X-prolyl aminopeptidase 3 2 2
MIRT723404 NLRP10 NLR family pyrin domain containing 10 2 2
MIRT723658 RPTN repetin 2 2
MIRT724424 WDR76 WD repeat domain 76 2 2
MIRT724544 HAUS2 HAUS augmin like complex subunit 2 2 2
MIRT724984 FSTL3 follistatin like 3 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-6778-3p Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-6778-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-6778-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (CP20)

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