miRTarBase - #MIRT460268


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pre-miRNA Information
pre-miRNA hsa-mir-3653   
Genomic Coordinates chr22: 29333158 - 29333267
Description Homo sapiens miR-3653 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3653-5p
Sequence 23| CCUCCUGAUGAUUCUUCUUC |42
Evidence Not_experimental
Experiments
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SLC26A2   
Synonyms D5S1708, DTD, DTDST, EDM4, MST153, MSTP157
Description solute carrier family 26 member 2
Transcript NM_000112   
Expression
Putative miRNA Targets on SLC26A2
3'UTR of SLC26A2
(miRNA target sites are highlighted)		 
>SLC26A2|NM_000112|3'UTR
   1 TTGAGAAGGTAGATAGAAGAATGTCTAGCCAATAGGTTAAAATTTCAAGTGTCCAACATTTCCCAGTTCCACAGTGGGAA
  81 ATTTTGCACACTTGAAATTTTAACCAAGTGGCTAGATATTATTCCTCCTTTGAAGCTAATGGCATTTGTATATACACACT
 161 GCAGCAGAGCTTGTAGCTGGACAGAGTCAAAAAGAAGAAAATACGGTTTCAGGCTTTCTTGCAGATATGAAGTATTCTTG
 241 GAATGCAATAAGTATGTATTGAACTGTACTGTAAAGTAGCTCCAAAACTTAATTACTCTCCTGTTTTAGGGGTTATACAT
 321 TTGGACTGTGCATTCTCCAAGAGATGAAGCGGTGAAGTTGGGATTTACATTGGAAGTGCTGTAGACTTCTTTATGTGGCT
 401 CAGTGGAGAGAGGGAAAGAATGTTGCACCTGCTCTAGTACCATAGGTCAAGAGGCTTCTGGATCACAAAGTCATAACTAG
 481 ACAGGTTTGTTCTTGTAGTTTTCTATCCCCAGTCTTTGCTCCCCAGATGGCAGTAGTTTTTAGTAGGAAAGTGCCATTCC
 561 TGTCCTTAAGGCACAGTCTCATCAGAAGTCTAATACCTGGGCAGGTTTATAACATCCTGAGAGCCAGCCTGACATTAGAC
 641 AGAATACCCTTTGTAATACATTGGAAATTTTTACTCATGCCTTTTTGTTTAGGATAAATAGGTAAGCACAAAGAGCTCTT
 721 CAAAATCAGAAAAAACAATAGGAGTCCTTCCTTGTCTTTTCTGTGATCTCTGTCCTTGTTTCTGAGACTTTCTCTACCAT
 801 TAAGCTCTATTTTAGCTTTCAGTTATTCTAGTTTGTTTCCCATGGAATCTGTCCTAAACTGGTGTTTTTGTCAGTGACAG
 881 TCTTGCCAGTCAGCAATTTCTAACAGCATTTTAAATGAGTTTGATGTACAGTAAATATTGATGACAATGACAGCTTTTAA
 961 CTCTTCAAGTCACCTAAAGCTATTATGCAGGAGGATTTAGAAGTCACATTCATAAAACCCAAGTGCTATGGGTGTATTAT
1041 TCATGATAGCTGGCCCACAGGTCATGAATTGAGGAGGAATTTGCTTTCAAAAAGCAAGAATGTCCAACACTGAAAGTTTA
1121 TAGTTTTATATTTGGACCTTGAAAGGTAAGAAAAAACCAGGTTCTCCAAAGTTAGGAATAGGGAACTAATTTATGAAACA
1201 GCCATCTTAAAAAAAAAAAAAGTAAACTGCAAAAGTACAAAATCATTTTTCAATCTGTTCCCAGTTTCTAAACAATTTTA
1281 AATATTTATGAGAAGCAAACCCTATGTGTAGGGCATCTGTTGGAGTGGGATGCTTTTAGACATATATTAAGTATGTACAT
1361 GTTTAATATGTATATTTAAAATGCATATATATTTTATTATATCTATATTATCCTATATAGATATATGTAACTTAGCTTTA
1441 TTGTTAGCTCCATAAGCTGCCAGTGTTGCTTTTCTGTTGGTAGAGCTCTCCCATTTGGTGACATGGAAAATACCTTTCCA
1521 TTATCACAACAAAGCAGTTGCTCAGTAGAAAGTCTAGATTTCTGTCTTATAGGTGATTTCTGTCTTATAGGTGATTATAA
1601 TCAAGTGTAGGCTTCCTGAATTTTGACATCCTTTTAGAACTTGGGTCTGGAATTCCAGAAATGTTAATTGCTGCTTGTAT
1681 TTGTTCTTGTTTGTTTTTTAGCCAGTATTTGCCCTTTCTATCCAGCCTTATGAATAATAGCAGTAAAATCACAGTATCTT
1761 GGTCAGTCTTTATTTTTTTCCTTTTTTCTTTTTTAAGAGACAGTCATCCAGGCCAGAGTGCAGTTTGATGATAGCTTACT
1841 GAAGCTTCCCACTCCTGGGCTCAAGTTATCCTTCCATTTTGGCCTCCTGAGTAGCTAGACCATAGGTATGCATCACCACA
1921 CCCTGCTAATTTTTTAAATTTTTTTCTAGAGAGAGGGTCTCACTGTGTTGCCCAGGCTGGTCTCAAACTCCAGGCTCAAG
2001 CAATCCTTCAGCCTCAGCCTCCCAGAGTGTTGGGATTACAGGCGTGAGCCACTGCACTTGGCCAAGTTATTTATTTTTAA
2081 TCTCTCTTGCCCTTCTCCCAAGGCAGGCTTAAGTTGAGACTATTATAGGTGTCTAATAACCTGTGACAGAGTAATGAGTA
2161 CATGCTTAAGATGTTATAATTAGCCAACACCAACACAGCAAAAAATATAATTCCAGCCAAAGATTCTGGAAAATCCCTCA
2241 GAAGGAGGGATAACAGGATTTGACCTTTACCAGCGATTTCTGTCCATATGTGGATGTAAACAGTTCTGGAACGTTATGCA
2321 TGCAGTTAGCGAATCCTTGAATTATGTTCTGGTTTGTACTTGTCCCATCCATCCAAACAAGAGATTCTGCTTTTGGTAGC
2401 CATCTGTAGAAACATTTAAGATGTCACTAGAATTTACATTTCATCCTCTCTACTTGGGTTGAGGTTGCCTATACTTGCAT
2481 ATTGTTAAAATGTTTTGGTTGCTGATATTCAGAGGAATGAAACCTGGAACCAAAGCCTAATTTGCCGATAAAAAAACTGT
2561 TTTCGGCCAGGTGCAGTGGCTCATGCCTGTAATCCCAGCACGTTGGGAGGCCGAGGCGGGTGGATCACCTGAAGTCAGGA
2641 GTTCGAGACCATCCTGGCTAACACTGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCGGGGCATGGTGGCACGC
2721 GCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTACTTGAACCCGGGAGGCGGAGGTTGCAGTAAGCAGAGA
2801 TTGTGCCACTGGACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAACAAACAAACAAAAAACTGTTTTCATTTGCT
2881 CTCTTGACCAAAGGATAGGACTTTAGTTCTTTAAGCATTATTTTAAACACTATATTGATACAAAAATATCTTGCTTACTC
2961 TAAACTTTAGAGTCTAAATGAAGCTTTTTCTCAGTACAAGATTCTGAGTATCATAAAATGGTTATTTAATTGAAACGTAG
3041 TGTGGTATACTCTTGATGGTTAGAACTCTTACAGCCTTATTTATTTTTAAGTTTGTTACAGCCAAAGGGTTGGAGTGTGC
3121 CAGTGCACAGGTAGACTAAGGAAAACATTATAGAGGAGTGAAGAGAACAGACCATTGAAAAGACTATTATCTGACCAGCG
3201 GAGGCAGAAAAGAGAGGAACCCAGTTGAATAGGATCCAATCCCTGGTTAGCCTCTACACAATAATAGGGAGACAAGGATT
3281 AGGAGCCATACCTCCCAGAGCAAGGTATCTTTCTAGAGCAAATTTCTCTTTCTAGAAGGGGAGGGTCACAGGGTCACAGA
3361 TTCACCAAAGCTGAAAGGGCTGAGGAGCTCATGGTAGCCTGGGCTGACCTACTCTGGAGCACGGTGTCTTCCTTCTAAAC
3441 TGAGTGACTGTAGTACTATCTGTGCCTCTGATGGTAATAAAACTGACAAGATGTCTAATTTTTTTTTAAGTAGGACCAAA
3521 GGAAAACAAGATTTAGATAGTCTGACTTTGCTTTTGAACAACAGACATTGCAAGTCAAAATTGTTGTCAAATTTACATAT
3601 GGTAAATGATGAACTTTAAAAATGTGTCCAGGTGTTAGATGAGTTCATTAGACTCTTTTAATGCTAATGGCTAGTACGTT
3681 TAAACAAAACAGCAGTTCTCTGCTGCAATATTCCCATTGACCACTTAAATGACCATAAGTGGTCATTTAAGAACATGTTA
3761 GGGTTAGCCCTGATCTGAATATAAAAGTGAGAAAAGGGCTACAGTGCATTTCTTGGTAACTTAAACTGAGTCTTGAAGTT
3841 ATAATGATCCATTCGAGTTCTGTGATCCTTATTGTTCTTAATTGTGTTTCTCTACGTATTGTTACAGATGAGCCATACGT
3921 TTCTTTGTATCAATGTAGACATGACTTCAGATACCTCTGAGGACCTACCCAGCAGTCTAGGACCCTGGGCCAAGTGCTGG
4001 GACTATGGTACTAAATCCAGTAGATGGGCTGTGTAGCAACTCTCCCAGGGAACACACTAGGGTACTTAGGGAGGTGCTTT
4081 GTGGAGCATGTTGAAGCTTTGAGATCTGAGCAGGAGGCAGTGATGTCCCTGGTCTATTCAGGGAAAGATTTCAGTGTGAA
4161 ATGGTAAACATCCAATTGACAGGATTTAGATTTTGCTTAGTTTTTCTGCTTTTTAATGTTTCTATCCCCCATCTCAGTGT
4241 TTTCTTTATCCATCCCAGTGATGCCTTATTTGAAACTGGGCTTAAACTGCAAAAAGAATGAAGTTGGATTTAGGAAGCTG
4321 TTAGATCATTGAGTGGTGTTGAGAGTGAAGTTTCACTAGCAGGGAAGTTTCCTTGAGCCTAAAATAAAAAGAAAAAATTA
4401 AAAAGAATCAGTTTTTTTAATTAAAAAAATAGAAAGCTGTTAGGCTCCTAATTCGTGGGGTTTTTTTTTGTAAAAACAGT
4481 TTAGATAATCCTGAATGCAATCATTAACTTGGTTGCTAATTACAAGAATGAAAATTATAATGGAAAAGGACAAAATAATA
4561 TACCAGCTGGTTTGTTATTATAGTCCGTGTATTAAAATACTATTGAAATACGTTAAAGGTAAATTTTTAAGGTTTAAAAA
4641 AAATTTAGTAACTTACAGGGATGGAGAATTTAGATGTCAGAGGTGGGGAGATTTATTTTTATAAGGTAATTTTTATCCTG
4721 ATAAGGACTTAAAAAAAAGTTTTGCAACTGAAATTTTAAAGTAAACATGTTAAGTACAGTTAAAAAGTAAGCATTGTAGT
4801 AAATAGTGGATTCTCTGGTGTGTATTTTTTATCTCAGTGTTGAAAATTGGAAAAGAATGGACTGAAGTCTAAAAACTGGA
4881 ATAATGAAGGACACTAAATGCCTTTATTGTAGATACTATGTTTGTAAGTCTATAGCTAAGCAACTTAAGCCAAAAAGGTC
4961 TTTCAACTGAAGCTTTAATCAACTTATTTTGGAGATGTTCTCTTCCCTTATCTCATGCGTCATCCCTAAAATAATAAGAT
5041 ACATGGGATCAAATAGCCCTTGCCTTTTCAACACAAATCAGTTGGAAAATTATGGTTTGAGTCCTGTTGCTGCCATGGCT
5121 TCTGTTTCTCAGAAATGAGTGTGTATGAACATACCAATCTATGTAATAGGCTACCTTTTTTTGTCTTCTTTGGAACTTTG
5201 TACACAAACCAAGACAATATCAGGGTGACAGGTGAATGAACTTAAATTCTCAGTCTTGTCTATTCACCAAAAAAGTATAC
5281 TGCCTGTTTTTTCTTTAATTATTCAAGGTTGATGACTTTTAGGAACATGTTTTATACTGTATTTTTTAATTAAAGCAAGT
5361 GCCTTGATGTAATTCCATGTAAATCATTGCTTAACCCTCTTATGGGATGAGGATGAGTTATTAATGTATTGCAGCCTACT
5441 GGAAAGGAGGGGGAGTTGGTTAATAGCAGATACTTTTCTTCTAGAAGCTTATGTTTTATGCTGTTTATTATGTAAGATCC
5521 TGTATGTGTGTTGAGATTTAGAGGTTTCATTTGTTTTGTCTGCTAATAAATTGTTACTCTAATAATAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cuUCUUCUUAGU-------AGUCCUCc 5'
            :|: |:||||       ||||||| 
Target 5' gcGGGTGGATCACCTGAAGTCAGGAGt 3'
 2616 - 2642 150.00 -18.20
2 
miRNA  3' cuucuucUUAGU-AGUCCUCc 5'
                 |: :| ||||||| 
Target 5' tagtcccAGCTACTCAGGAGg 3'
 2726 - 2746 141.00 -14.00
3 
miRNA  3' cuUCUUC--UUAGUAGUCCUCc 5'
            :|:||  ||  ||:||||| 
Target 5' taGGGAGACAAGGATTAGGAGc 3'
 3265 - 3286 140.00 -13.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
255133 1 ClinVar
352033 54 ClinVar
993708 84 ClinVar
904825 183 ClinVar
906435 205 ClinVar
352034 206 ClinVar
352035 217 ClinVar
904112 221 ClinVar
352036 265 ClinVar
352037 301 ClinVar
352038 331 ClinVar
352039 395 ClinVar
907497 444 ClinVar
352040 454 ClinVar
352041 591 ClinVar
352042 601 ClinVar
904950 694 ClinVar
906544 835 ClinVar
352043 897 ClinVar
352044 939 ClinVar
352045 975 ClinVar
352046 1025 ClinVar
905016 1033 ClinVar
906598 1041 ClinVar
906599 1072 ClinVar
352047 1147 ClinVar
352048 1209 ClinVar
352049 1209 ClinVar
904284 1261 ClinVar
904285 1377 ClinVar
352050 1428 ClinVar
352051 1544 ClinVar
352052 1553 ClinVar
907698 1589 ClinVar
352053 1632 ClinVar
352054 1892 ClinVar
904362 1936 ClinVar
352055 1971 ClinVar
352056 2004 ClinVar
352057 2177 ClinVar
906750 2213 ClinVar
352058 2227 ClinVar
904422 2233 ClinVar
904423 2266 ClinVar
352059 2290 ClinVar
352060 2331 ClinVar
352061 2358 ClinVar
352062 2444 ClinVar
352063 2471 ClinVar
904488 2477 ClinVar
352064 2604 ClinVar
352065 2613 ClinVar
352066 2618 ClinVar
907858 2721 ClinVar
352067 2773 ClinVar
352068 2781 ClinVar
352069 2791 ClinVar
905337 2874 ClinVar
906946 2971 ClinVar
906947 2979 ClinVar
907921 3038 ClinVar
352070 3045 ClinVar
352071 3166 ClinVar
352072 3226 ClinVar
352073 3262 ClinVar
905929 3263 ClinVar
352074 3308 ClinVar
904686 3361 ClinVar
352075 3405 ClinVar
352076 3436 ClinVar
352077 3467 ClinVar
905986 3508 ClinVar
352078 3581 ClinVar
352079 3671 ClinVar
352080 3690 ClinVar
904762 3919 ClinVar
905551 3941 ClinVar
906063 4018 ClinVar
352081 4064 ClinVar
906064 4105 ClinVar
352082 4225 ClinVar
352083 4334 ClinVar
352084 4392 ClinVar
352085 4398 ClinVar
905611 4420 ClinVar
352086 4461 ClinVar
352087 4461 ClinVar
352088 4461 ClinVar
906129 4463 ClinVar
907122 4515 ClinVar
352089 4587 ClinVar
352090 4613 ClinVar
903772 4660 ClinVar
352091 4783 ClinVar
352092 4800 ClinVar
906195 4858 ClinVar
352093 4870 ClinVar
352094 4931 ClinVar
352095 4983 ClinVar
903849 5078 ClinVar
905742 5204 ClinVar
905743 5215 ClinVar
906257 5252 ClinVar
352096 5339 ClinVar
352097 5388 ClinVar
903909 5417 ClinVar
352098 5554 ClinVar
COSN22708895 716 COSMIC
COSN9928589 1048 COSMIC
COSN29037144 1222 COSMIC
COSN29086082 1222 COSMIC
COSN15977015 1595 COSMIC
COSN9411280 1626 COSMIC
COSN9411281 1723 COSMIC
COSN31959963 2645 COSMIC
COSN182090 2970 COSMIC
COSN5591998 3061 COSMIC
COSN29677115 3508 COSMIC
COSN19390540 4089 COSMIC
COSN9411282 4123 COSMIC
COSN6584119 4147 COSMIC
COSN22193988 4461 COSMIC
COSN20102037 4470 COSMIC
COSN2076465 4550 COSMIC
COSN29827073 4650 COSMIC
COSN25127515 4674 COSMIC
COSN24075506 4732 COSMIC
COSN20091281 5216 COSMIC
COSN14747397 5339 COSMIC
COSN14774786 5554 COSMIC
rs17711997 5339 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs61732052 1 dbSNP
rs377375559 9 dbSNP
rs748275663 10 dbSNP
rs766854098 10 dbSNP
rs769986063 13 dbSNP
rs773546058 14 dbSNP
rs775062734 15 dbSNP
rs1409251359 17 dbSNP
rs763101767 19 dbSNP
rs1171507593 20 dbSNP
rs771121032 21 dbSNP
rs998171839 22 dbSNP
rs775182119 26 dbSNP
rs1403525784 30 dbSNP
rs1322730271 33 dbSNP
rs760414785 34 dbSNP
rs1411372287 35 dbSNP
rs1255627363 43 dbSNP
rs1038813518 47 dbSNP
rs886060226 54 dbSNP
rs954088228 56 dbSNP
rs1228256111 60 dbSNP
rs529112280 70 dbSNP
rs1340554120 75 dbSNP
rs143847430 84 dbSNP
rs1393778883 85 dbSNP
rs1401139745 92 dbSNP
rs932757555 114 dbSNP
rs1431423838 120 dbSNP
rs1051193183 126 dbSNP
rs1167891312 128 dbSNP
rs891274631 133 dbSNP
rs562629009 136 dbSNP
rs1173173318 140 dbSNP
rs999027543 147 dbSNP
rs1371520355 148 dbSNP
rs1422096637 151 dbSNP
rs1033105432 153 dbSNP
rs956059188 161 dbSNP
rs1257134189 172 dbSNP
rs1183102270 174 dbSNP
rs770082455 183 dbSNP
rs1272847800 185 dbSNP
rs1392891696 189 dbSNP
rs893413322 193 dbSNP
rs1024164474 194 dbSNP
rs529744947 205 dbSNP
rs115383424 206 dbSNP
rs886060227 217 dbSNP
rs1288625435 220 dbSNP
rs775637237 221 dbSNP
rs1293059000 222 dbSNP
rs753464677 222 dbSNP
rs926914921 226 dbSNP
rs1348418086 229 dbSNP
rs1307247516 236 dbSNP
rs969153746 240 dbSNP
rs1001883031 249 dbSNP
rs1034732914 258 dbSNP
rs1456473326 259 dbSNP
rs930336319 260 dbSNP
rs1245012397 262 dbSNP
rs886060228 265 dbSNP
rs560524828 269 dbSNP
rs146843578 271 dbSNP
rs1356569265 272 dbSNP
rs552470458 277 dbSNP
rs1473661344 279 dbSNP
rs960493031 280 dbSNP
rs1181623477 285 dbSNP
rs1286641028 290 dbSNP
rs907658315 297 dbSNP
rs757369599 298 dbSNP
rs570796999 301 dbSNP
rs1184535272 305 dbSNP
rs552562764 313 dbSNP
rs1333531752 320 dbSNP
rs1268145055 327 dbSNP
rs1229686852 329 dbSNP
rs191884433 331 dbSNP
rs1436986982 342 dbSNP
rs1188442883 343 dbSNP
rs934205916 345 dbSNP
rs1321537642 346 dbSNP
rs1370335635 351 dbSNP
rs1422818563 386 dbSNP
rs370711127 390 dbSNP
rs1160071611 392 dbSNP
rs1050012102 394 dbSNP
rs140641532 395 dbSNP
rs932656670 401 dbSNP
rs568578594 409 dbSNP
rs1000234877 411 dbSNP
rs1361710384 412 dbSNP
rs1478579920 418 dbSNP
rs1051142063 426 dbSNP
rs535585042 429 dbSNP
rs1468473013 433 dbSNP
rs934808344 435 dbSNP
rs1463146031 436 dbSNP
rs891909766 437 dbSNP
rs1219402291 438 dbSNP
rs1346861190 442 dbSNP
rs1272799356 443 dbSNP
rs115977282 444 dbSNP
rs1365922878 446 dbSNP
rs886060229 454 dbSNP
rs774903038 455 dbSNP
rs1437431369 464 dbSNP
rs1386491974 467 dbSNP
rs34679657 467 dbSNP
rs746026192 471 dbSNP
rs971208499 476 dbSNP
rs1317914870 478 dbSNP
rs979957329 485 dbSNP
rs1396262381 486 dbSNP
rs1314417140 496 dbSNP
rs1380020268 508 dbSNP
rs1044666634 518 dbSNP
rs1391383086 519 dbSNP
rs1034306627 520 dbSNP
rs1191002822 545 dbSNP
rs183837786 547 dbSNP
rs951801628 563 dbSNP
rs904835129 566 dbSNP
rs984499223 572 dbSNP
rs1309944905 581 dbSNP
rs1046710 591 dbSNP
rs143723255 601 dbSNP
rs960480268 606 dbSNP
rs975846529 620 dbSNP
rs1483448968 629 dbSNP
rs1015872014 661 dbSNP
rs1201316376 672 dbSNP
rs1359973561 673 dbSNP
rs1245165665 687 dbSNP
rs577187084 688 dbSNP
rs1448846515 692 dbSNP
rs974372860 694 dbSNP
rs1311271280 700 dbSNP
rs934153715 703 dbSNP
rs953994218 711 dbSNP
rs1157483146 720 dbSNP
rs1428314727 724 dbSNP
rs1419407402 730 dbSNP
rs1345029820 738 dbSNP
rs1186719164 740 dbSNP
rs1235429944 740 dbSNP
rs1483263187 741 dbSNP
rs986834397 747 dbSNP
rs1202747127 751 dbSNP
rs1306916456 754 dbSNP
rs1290471160 755 dbSNP
rs148105298 773 dbSNP
rs1304265408 775 dbSNP
rs539435656 776 dbSNP
rs1451397720 784 dbSNP
rs1309360740 786 dbSNP
rs890083724 795 dbSNP
rs935986842 798 dbSNP
rs1378405633 801 dbSNP
rs1054433524 803 dbSNP
rs1306203521 805 dbSNP
rs1312599516 808 dbSNP
rs1166076492 823 dbSNP
rs1406624403 831 dbSNP
rs1410901580 832 dbSNP
rs767822866 835 dbSNP
rs914697962 844 dbSNP
rs1010239042 845 dbSNP
rs1253520265 856 dbSNP
rs947599589 863 dbSNP
rs1460176878 870 dbSNP
rs1247243364 872 dbSNP
rs1045007524 876 dbSNP
rs140956049 881 dbSNP
rs1271291439 886 dbSNP
rs1232740896 895 dbSNP
rs886060230 897 dbSNP
rs368618423 901 dbSNP
rs1330158411 919 dbSNP
rs1238879602 920 dbSNP
rs937673870 927 dbSNP
rs1176053069 931 dbSNP
rs150188068 939 dbSNP
rs1294662400 949 dbSNP
rs896226687 962 dbSNP
rs1003889616 970 dbSNP
rs1457279744 974 dbSNP
rs886060231 975 dbSNP
rs1434164303 980 dbSNP
rs1179056923 987 dbSNP
rs1427588108 988 dbSNP
rs1156427067 994 dbSNP
rs1418313268 999 dbSNP
rs1425530156 1008 dbSNP
rs1468982948 1023 dbSNP
rs1192867887 1024 dbSNP
rs8073 1025 dbSNP
rs1252296231 1029 dbSNP
rs188329536 1033 dbSNP
rs1028651567 1035 dbSNP
rs527917165 1045 dbSNP
rs1237105850 1049 dbSNP
rs953982813 1051 dbSNP
rs545967786 1061 dbSNP
rs986780640 1063 dbSNP
rs1439361049 1071 dbSNP
rs1297589956 1072 dbSNP
rs1369479400 1075 dbSNP
rs1006562491 1076 dbSNP
rs956040134 1084 dbSNP
rs564489387 1091 dbSNP
rs138240603 1099 dbSNP
rs989280215 1121 dbSNP
rs1452536803 1122 dbSNP
rs914666454 1123 dbSNP
rs947532848 1131 dbSNP
rs1452309021 1144 dbSNP
rs886060232 1147 dbSNP
rs191718949 1160 dbSNP
rs3172979 1165 dbSNP
rs1189082130 1167 dbSNP
rs550406831 1169 dbSNP
rs927529687 1185 dbSNP
rs1203452728 1205 dbSNP
rs1057328789 1209 dbSNP
rs886060233 1209 dbSNP
rs886060234 1209 dbSNP
rs938963861 1209 dbSNP
rs896131806 1210 dbSNP
rs1024303858 1224 dbSNP
rs923049183 1232 dbSNP
rs955521816 1233 dbSNP
rs1280275202 1234 dbSNP
rs1229699670 1254 dbSNP
rs568364063 1261 dbSNP
rs1381161196 1279 dbSNP
rs1379497784 1297 dbSNP
rs747948445 1303 dbSNP
rs898279748 1306 dbSNP
rs1232322929 1316 dbSNP
rs911392928 1324 dbSNP
rs1202155834 1330 dbSNP
rs1371261757 1338 dbSNP
rs1191167426 1344 dbSNP
rs1427969588 1348 dbSNP
rs995746339 1361 dbSNP
rs1028181479 1377 dbSNP
rs1484895967 1388 dbSNP
rs1279981198 1390 dbSNP
rs1480313773 1394 dbSNP
rs1345025364 1395 dbSNP
rs936243948 1398 dbSNP
rs1055119566 1404 dbSNP
rs1171004001 1408 dbSNP
rs1421178154 1422 dbSNP
rs760907801 1428 dbSNP
rs1019564467 1439 dbSNP
rs1169173951 1441 dbSNP
rs1394306814 1449 dbSNP
rs1167206926 1455 dbSNP
rs955987517 1457 dbSNP
rs1369060494 1460 dbSNP
rs988859570 1488 dbSNP
rs1474380356 1489 dbSNP
rs946087225 1499 dbSNP
rs1257078795 1507 dbSNP
rs1183407580 1515 dbSNP
rs1439899161 1515 dbSNP
rs1022123724 1522 dbSNP
rs968851594 1524 dbSNP
rs886060235 1544 dbSNP
rs1488524893 1548 dbSNP
rs1349889160 1550 dbSNP
rs143723917 1553 dbSNP
rs1230916903 1557 dbSNP
rs1301201283 1558 dbSNP
rs907322537 1573 dbSNP
rs1333752660 1581 dbSNP
rs1288562997 1584 dbSNP
rs537659797 1589 dbSNP
rs1333723954 1592 dbSNP
rs1328102322 1597 dbSNP
rs1055601217 1601 dbSNP
rs183809843 1607 dbSNP
rs1387216647 1609 dbSNP
rs887623923 1620 dbSNP
rs7717795 1632 dbSNP
rs908141880 1633 dbSNP
rs1417476833 1636 dbSNP
rs1160122366 1648 dbSNP
rs1014856560 1656 dbSNP
rs961697908 1668 dbSNP
rs1364373510 1678 dbSNP
rs1181739003 1680 dbSNP
rs1452753903 1687 dbSNP
rs1212982872 1694 dbSNP
rs1272380800 1695 dbSNP
rs1322394609 1703 dbSNP
rs997221525 1717 dbSNP
rs1030067730 1727 dbSNP
rs953128542 1729 dbSNP
rs1467597974 1738 dbSNP
rs986303139 1739 dbSNP
rs1268404193 1759 dbSNP
rs911355832 1771 dbSNP
rs957780486 1774 dbSNP
rs990410934 1775 dbSNP
rs1244155671 1781 dbSNP
rs1474225668 1782 dbSNP
rs1348286894 1788 dbSNP
rs1185517666 1789 dbSNP
rs1278793879 1789 dbSNP
rs1413961114 1805 dbSNP
rs1373156352 1817 dbSNP
rs186726602 1819 dbSNP
rs1301137224 1823 dbSNP
rs1438835959 1829 dbSNP
rs1425997918 1833 dbSNP
rs111989016 1844 dbSNP
rs752343692 1869 dbSNP
rs1321476519 1871 dbSNP
rs913526981 1877 dbSNP
rs1383057472 1886 dbSNP
rs1158392076 1890 dbSNP
rs1478548142 1891 dbSNP
rs148778566 1892 dbSNP
rs886060236 1892 dbSNP
rs889602802 1896 dbSNP
rs1453269383 1900 dbSNP
rs199561826 1906 dbSNP
rs1008068132 1912 dbSNP
rs1444988187 1915 dbSNP
rs558781341 1921 dbSNP
rs1200878547 1928 dbSNP
rs570621879 1932 dbSNP
rs537754833 1936 dbSNP
rs1045741308 1937 dbSNP
rs1449569140 1939 dbSNP
rs928650171 1957 dbSNP
rs937416193 1960 dbSNP
rs1233391135 1962 dbSNP
rs556396469 1963 dbSNP
rs574365495 1966 dbSNP
rs1324954810 1968 dbSNP
rs147208348 1971 dbSNP
rs1415432406 1977 dbSNP
rs1377581191 1980 dbSNP
rs553480974 1997 dbSNP
rs1172328157 2001 dbSNP
rs886060237 2004 dbSNP
rs1312957875 2005 dbSNP
rs571806880 2006 dbSNP
rs546026822 2020 dbSNP
rs1391316726 2038 dbSNP
rs897768937 2044 dbSNP
rs1187801759 2045 dbSNP
rs997171397 2046 dbSNP
rs757991237 2053 dbSNP
rs1029979396 2065 dbSNP
rs1486533375 2066 dbSNP
rs1217909711 2083 dbSNP
rs1209873098 2093 dbSNP
rs1275000748 2098 dbSNP
rs1216424674 2099 dbSNP
rs1286801892 2102 dbSNP
rs1337482823 2123 dbSNP
rs992990313 2124 dbSNP
rs564346539 2127 dbSNP
rs1214711786 2129 dbSNP
rs1007277394 2132 dbSNP
rs1032542150 2136 dbSNP
rs1445976751 2138 dbSNP
rs962345400 2167 dbSNP
rs1181238650 2170 dbSNP
rs772022436 2177 dbSNP
rs1384033711 2188 dbSNP
rs1440240645 2189 dbSNP
rs1418085919 2192 dbSNP
rs368682878 2194 dbSNP
rs1163496942 2197 dbSNP
rs1476017834 2205 dbSNP
rs919574683 2206 dbSNP
rs772984946 2209 dbSNP
rs777419320 2213 dbSNP
rs1234562161 2215 dbSNP
rs1020482864 2224 dbSNP
rs7722454 2227 dbSNP
rs1399866259 2231 dbSNP
rs1233972792 2233 dbSNP
rs1337270739 2238 dbSNP
rs1291641913 2245 dbSNP
rs760629385 2249 dbSNP
rs1407142273 2260 dbSNP
rs1374465771 2263 dbSNP
rs1300426286 2265 dbSNP
rs943848139 2269 dbSNP
rs543779853 2274 dbSNP
rs1326075094 2275 dbSNP
rs981675373 2276 dbSNP
rs191140997 2287 dbSNP
rs886060238 2290 dbSNP
rs937349326 2295 dbSNP
rs1175250486 2302 dbSNP
rs991583547 2303 dbSNP
rs184264397 2313 dbSNP
rs1240461742 2318 dbSNP
rs1281776282 2319 dbSNP
rs941856906 2321 dbSNP
rs1036226096 2324 dbSNP
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rs886060239 2331 dbSNP
rs1349031095 2332 dbSNP
rs1051688774 2333 dbSNP
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rs886060240 2358 dbSNP
rs1309680309 2359 dbSNP
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rs1043384434 2363 dbSNP
rs1373302566 2365 dbSNP
rs190751392 2368 dbSNP
rs1001498573 2373 dbSNP
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rs1324819416 2380 dbSNP
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rs1201312864 2396 dbSNP
rs780949916 2403 dbSNP
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rs886060241 2444 dbSNP
rs776123767 2446 dbSNP
rs962536306 2449 dbSNP
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rs1028326035 2504 dbSNP
rs1174532320 2505 dbSNP
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rs1392004055 2547 dbSNP
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rs1331516382 2550 dbSNP
rs985160175 2550 dbSNP
rs1286704187 2556 dbSNP
rs1334529565 2560 dbSNP
rs981627355 2565 dbSNP
rs780258339 2566 dbSNP
rs1284330315 2592 dbSNP
rs976509332 2602 dbSNP
rs1175502015 2603 dbSNP
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rs945871589 2609 dbSNP
rs958732200 2610 dbSNP
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rs28451300 2613 dbSNP
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rs188922059 2618 dbSNP
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rs1374827569 2658 dbSNP
rs1199420044 2661 dbSNP
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rs180966130 3508 dbSNP
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rs1156597080 3530 dbSNP
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rs1451237193 3560 dbSNP
rs755162585 3567 dbSNP
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rs1389537037 3598 dbSNP
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rs990973446 3847 dbSNP
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rs1256039187 3855 dbSNP
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rs1274509684 4064 dbSNP
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rs375486346 4123 dbSNP
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rs999873340 4125 dbSNP
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rs1390396219 4137 dbSNP
rs1289803935 4144 dbSNP
rs1422138978 4148 dbSNP
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rs1477499607 4159 dbSNP
rs1157582606 4188 dbSNP
rs1022062360 4190 dbSNP
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rs1379007627 4202 dbSNP
rs777116235 4225 dbSNP
rs1450668252 4227 dbSNP
rs966519286 4229 dbSNP
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rs1285155386 4234 dbSNP
rs1024123792 4237 dbSNP
rs1345727395 4240 dbSNP
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rs1034939305 4264 dbSNP
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rs952132542 4272 dbSNP
rs984828174 4280 dbSNP
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rs570235763 4308 dbSNP
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rs1344643161 4361 dbSNP
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rs150508217 4392 dbSNP
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rs547302746 4398 dbSNP
rs912171251 4399 dbSNP
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rs565621168 4409 dbSNP
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rs906994122 4455 dbSNP
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rs1165283198 4512 dbSNP
rs1406832875 4514 dbSNP
rs1411577966 4518 dbSNP
rs1162517090 4520 dbSNP
rs1401042870 4524 dbSNP
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rs780186716 4526 dbSNP
rs1319283003 4531 dbSNP
rs964725806 4536 dbSNP
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rs1237744677 4551 dbSNP
rs1222812481 4553 dbSNP
rs1319986928 4558 dbSNP
rs1012594412 4561 dbSNP
rs1023258943 4564 dbSNP
rs945529269 4569 dbSNP
rs1455118050 4576 dbSNP
rs1310867632 4581 dbSNP
rs886060250 4587 dbSNP
rs962697853 4588 dbSNP
rs936955654 4590 dbSNP
rs1224713808 4595 dbSNP
rs973808542 4601 dbSNP
rs918380682 4605 dbSNP
rs1347847434 4612 dbSNP
rs886060251 4613 dbSNP
rs894104134 4622 dbSNP
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rs1045880635 4626 dbSNP
rs906989609 4627 dbSNP
rs912061146 4634 dbSNP
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rs1221260245 4639 dbSNP
rs1039697993 4645 dbSNP
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rs887620675 4657 dbSNP
rs143908264 4660 dbSNP
rs1470443734 4666 dbSNP
rs1160117603 4684 dbSNP
rs879682176 4694 dbSNP
rs1405448691 4700 dbSNP
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rs574194280 4706 dbSNP
rs1274075904 4725 dbSNP
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rs972411050 4731 dbSNP
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rs1344744768 4737 dbSNP
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rs1435172383 4751 dbSNP
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rs902634703 4778 dbSNP
rs886060252 4783 dbSNP
rs1406976028 4789 dbSNP
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rs72832119 4800 dbSNP
rs925448046 4810 dbSNP
rs761387986 4814 dbSNP
rs1256113705 4816 dbSNP
rs868302693 4819 dbSNP
rs552095539 4831 dbSNP
rs1012130097 4834 dbSNP
rs1277425536 4848 dbSNP
rs1024005879 4854 dbSNP
rs1219016509 4856 dbSNP
rs1342078685 4861 dbSNP
rs962370486 4863 dbSNP
rs1399399492 4870 dbSNP
rs368872246 4870 dbSNP
rs188672399 4880 dbSNP
rs1467606896 4886 dbSNP
rs578249923 4892 dbSNP
rs1340437628 4912 dbSNP
rs1357678370 4919 dbSNP
rs1443483139 4925 dbSNP
rs1191912871 4931 dbSNP
rs79521091 4931 dbSNP
rs1428488131 4933 dbSNP
rs74589369 4983 dbSNP
rs1183124822 4988 dbSNP
rs1227471104 4991 dbSNP
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rs1263341163 4997 dbSNP
rs1481950056 4998 dbSNP
rs1047953800 5008 dbSNP
rs1201253150 5011 dbSNP
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rs1006067219 5016 dbSNP
rs575500014 5019 dbSNP
rs1183887631 5020 dbSNP
rs1397867781 5028 dbSNP
rs1038963017 5035 dbSNP
rs1231031361 5037 dbSNP
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rs1019074375 5047 dbSNP
rs1402694953 5054 dbSNP
rs543128334 5056 dbSNP
rs966618775 5058 dbSNP
rs975014858 5064 dbSNP
rs1461760816 5075 dbSNP
rs1430276243 5078 dbSNP
rs922200344 5079 dbSNP
rs946706111 5091 dbSNP
rs979371743 5094 dbSNP
rs1422567675 5096 dbSNP
rs923961541 5107 dbSNP
rs140674261 5111 dbSNP
rs935377619 5113 dbSNP
rs150032181 5140 dbSNP
rs1178680995 5146 dbSNP
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rs540805475 5158 dbSNP
rs145273266 5160 dbSNP
rs1411070137 5163 dbSNP
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rs1488648677 5170 dbSNP
rs533386712 5171 dbSNP
rs1242596022 5173 dbSNP
rs1321047833 5174 dbSNP
rs753665671 5175 dbSNP
rs1240898629 5176 dbSNP
rs1379432153 5178 dbSNP
rs1409575466 5184 dbSNP
rs1284271005 5186 dbSNP
rs1347042486 5189 dbSNP
rs1391189436 5202 dbSNP
rs559269489 5204 dbSNP
rs1391973021 5206 dbSNP
rs533046962 5207 dbSNP
rs997500855 5209 dbSNP
rs1456875129 5218 dbSNP
rs551345290 5222 dbSNP
rs866283534 5224 dbSNP
rs1197527366 5230 dbSNP
rs947918865 5242 dbSNP
rs1385135573 5246 dbSNP
rs569655749 5252 dbSNP
rs898447278 5263 dbSNP
rs1378104833 5271 dbSNP
rs1482661862 5287 dbSNP
rs999595906 5292 dbSNP
rs1032846140 5297 dbSNP
rs1269287494 5298 dbSNP
rs958190752 5308 dbSNP
rs1490171347 5309 dbSNP
rs1457453683 5315 dbSNP
rs530392889 5335 dbSNP
rs17711997 5339 dbSNP
rs1481551817 5342 dbSNP
rs1217436806 5349 dbSNP
rs1355869508 5353 dbSNP
rs1277837925 5355 dbSNP
rs1197003397 5360 dbSNP
rs1331866735 5369 dbSNP
rs916811846 5370 dbSNP
rs567348765 5388 dbSNP
rs1385404458 5396 dbSNP
rs886778106 5398 dbSNP
rs535283941 5401 dbSNP
rs1007945580 5417 dbSNP
rs1299274237 5422 dbSNP
rs1369267019 5439 dbSNP
rs1421004883 5448 dbSNP
rs982783817 5449 dbSNP
rs928297417 5451 dbSNP
rs1019817747 5452 dbSNP
rs1378949818 5453 dbSNP
rs779210779 5456 dbSNP
rs748252863 5462 dbSNP
rs552503579 5475 dbSNP
rs1479948266 5476 dbSNP
rs1263829896 5485 dbSNP
rs1195830271 5487 dbSNP
rs770923583 5493 dbSNP
rs1487264504 5499 dbSNP
rs1322437244 5501 dbSNP
rs908997213 5508 dbSNP
rs553597903 5531 dbSNP
rs1346005066 5532 dbSNP
rs1257940734 5537 dbSNP
rs10476926 5554 dbSNP
rs1345211588 5556 dbSNP
rs1279222373 5562 dbSNP
rs1029129997 5566 dbSNP
rs1229007402 5570 dbSNP
rs1339052558 5580 dbSNP
rs1402473277 5580 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' cuUCUUCUUAGU-AGUCCUCc 5'
            ||:||: | |  |||||| 
Target 5' -cAGGAGGCUGAGGCAGGAGa 3'
 		1 - 20
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000286298.4 | 3UTR | CAGGAGGCUGAGGCAGGAGAAUUACUUGAACCCG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
543 hsa-miR-3653-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT118037 SLC1A5 solute carrier family 1 member 5 2 2
MIRT134378 E2F2 E2F transcription factor 2 2 2
MIRT171365 PHTF2 putative homeodomain transcription factor 2 2 2
MIRT174716 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 2
MIRT250468 NFATC2IP nuclear factor of activated T-cells 2 interacting protein 2 2
MIRT261002 HIF1AN hypoxia inducible factor 1 alpha subunit inhibitor 2 4
MIRT306045 SKIL SKI like proto-oncogene 2 4
MIRT352741 CSNK1E casein kinase 1 epsilon 2 2
MIRT380445 SLC2A1 solute carrier family 2 member 1 2 2
MIRT442181 SRP68 signal recognition particle 68 2 6
MIRT448534 RIMS4 regulating synaptic membrane exocytosis 4 2 2
MIRT451362 UQCR11 ubiquinol-cytochrome c reductase, complex III subunit XI 2 2
MIRT451444 ZNF556 zinc finger protein 556 2 4
MIRT452667 PPIA peptidylprolyl isomerase A 2 2
MIRT458768 CES2 carboxylesterase 2 2 2
MIRT460268 SLC26A2 solute carrier family 26 member 2 2 2
MIRT460535 TM4SF5 transmembrane 4 L six family member 5 2 2
MIRT460602 FEM1A fem-1 homolog A 2 4
MIRT463622 YY1 YY1 transcription factor 2 2
MIRT473708 MAPK1 mitogen-activated protein kinase 1 2 6
MIRT474922 KCTD20 potassium channel tetramerization domain containing 20 2 2
MIRT478532 CTNS cystinosin, lysosomal cystine transporter 2 2
MIRT482760 TMEM126B transmembrane protein 126B 2 2
MIRT491029 FDX1 ferredoxin 1 2 4
MIRT492753 PER1 period circadian clock 1 2 8
MIRT494140 CTC1 CST telomere replication complex component 1 2 10
MIRT497863 UBA5 ubiquitin like modifier activating enzyme 5 2 4
MIRT512405 CD84 CD84 molecule 2 2
MIRT512529 ATCAY ATCAY, caytaxin 2 4
MIRT513039 BRIX1 BRX1, biogenesis of ribosomes 2 2
MIRT517888 SSTR2 somatostatin receptor 2 2 2
MIRT520420 TXNL1 thioredoxin like 1 2 6
MIRT521826 POLR1D RNA polymerase I subunit D 2 2
MIRT534072 SRPK1 SRSF protein kinase 1 2 2
MIRT534240 SLC23A1 solute carrier family 23 member 1 2 2
MIRT538794 C3orf52 chromosome 3 open reading frame 52 2 2
MIRT538980 BCL2L2 BCL2 like 2 2 2
MIRT542111 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 4
MIRT546462 SLC39A14 solute carrier family 39 member 14 2 2
MIRT552217 SSPN sarcospan 2 2
MIRT552224 NDUFS1 NADH:ubiquinone oxidoreductase core subunit S1 2 2
MIRT554420 SATB2 SATB homeobox 2 2 2
MIRT555385 PPP1CC protein phosphatase 1 catalytic subunit gamma 2 2
MIRT569625 MPRIP myosin phosphatase Rho interacting protein 2 2
MIRT573895 MKI67 marker of proliferation Ki-67 2 2
MIRT575161 Fam120c family with sequence similarity 120, member C 2 2
MIRT607347 YAE1D1 Yae1 domain containing 1 2 6
MIRT607413 MCTS1 MCTS1, re-initiation and release factor 2 2
MIRT608320 SYK spleen associated tyrosine kinase 2 4
MIRT608473 RRP36 ribosomal RNA processing 36 2 2
MIRT608523 TMOD3 tropomodulin 3 2 4
MIRT608572 RNF149 ring finger protein 149 2 2
MIRT608609 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT608676 STPG1 sperm tail PG-rich repeat containing 1 2 2
MIRT608724 ZKSCAN1 zinc finger with KRAB and SCAN domains 1 2 2
MIRT610392 FOXE1 forkhead box E1 2 2
MIRT610537 FAM46A family with sequence similarity 46 member A 2 4
MIRT610664 PHLDA3 pleckstrin homology like domain family A member 3 2 2
MIRT611258 EHD3 EH domain containing 3 2 2
MIRT612247 MICALL1 MICAL like 1 2 2
MIRT613500 ZNF488 zinc finger protein 488 2 2
MIRT613790 RPS6 ribosomal protein S6 2 2
MIRT613832 SPIRE2 spire type actin nucleation factor 2 2 2
MIRT614357 LOH12CR1 BLOC-1 related complex subunit 5 2 2
MIRT614539 NOA1 nitric oxide associated 1 2 2
MIRT615947 SORD sorbitol dehydrogenase 2 2
MIRT616144 HS3ST1 heparan sulfate-glucosamine 3-sulfotransferase 1 2 2
MIRT617103 MPPE1 metallophosphoesterase 1 2 2
MIRT617383 FAM227A family with sequence similarity 227 member A 2 2
MIRT618126 LACTB lactamase beta 2 4
MIRT618236 PGBD4 piggyBac transposable element derived 4 2 2
MIRT618262 DDX51 DEAD-box helicase 51 2 2
MIRT618286 ZNF682 zinc finger protein 682 2 4
MIRT618316 IPP intracisternal A particle-promoted polypeptide 2 2
MIRT618678 MCM8 minichromosome maintenance 8 homologous recombination repair factor 2 2
MIRT619206 LRIF1 ligand dependent nuclear receptor interacting factor 1 2 2
MIRT619658 CORO2A coronin 2A 2 2
MIRT619726 FPR2 formyl peptide receptor 2 2 2
MIRT619870 ZNF347 zinc finger protein 347 2 2
MIRT620129 ZNF283 zinc finger protein 283 2 2
MIRT621087 WDR12 WD repeat domain 12 2 2
MIRT621114 SP110 SP110 nuclear body protein 2 2
MIRT621129 EMC7 ER membrane protein complex subunit 7 2 4
MIRT621236 SIGLEC9 sialic acid binding Ig like lectin 9 2 4
MIRT621421 PNPLA3 patatin like phospholipase domain containing 3 2 2
MIRT621576 ZBTB43 zinc finger and BTB domain containing 43 2 2
MIRT621689 TSPYL1 TSPY like 1 2 2
MIRT621794 TMEM233 transmembrane protein 233 2 2
MIRT621929 SYAP1 synapse associated protein 1 2 4
MIRT621965 STRIP2 striatin interacting protein 2 2 2
MIRT622102 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT622184 SLC7A14 solute carrier family 7 member 14 2 2
MIRT622238 SLC25A45 solute carrier family 25 member 45 2 2
MIRT622473 RNF11 ring finger protein 11 2 2
MIRT622514 RBM20 RNA binding motif protein 20 2 2
MIRT622523 RAD51 RAD51 recombinase 2 2
MIRT622665 POLQ DNA polymerase theta 2 4
MIRT622699 PLEKHO1 pleckstrin homology domain containing O1 2 2
MIRT622831 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT622873 PDE12 phosphodiesterase 12 2 2
MIRT623031 OCIAD2 OCIA domain containing 2 2 2
MIRT623083 NME6 NME/NM23 nucleoside diphosphate kinase 6 2 2
MIRT623303 MARCH7 membrane associated ring-CH-type finger 7 2 2
MIRT623932 FKBP14 FK506 binding protein 14 2 2
MIRT624060 EIF4E eukaryotic translation initiation factor 4E 2 2
MIRT624295 COMMD2 COMM domain containing 2 2 2
MIRT624521 C3orf62 chromosome 3 open reading frame 62 2 2
MIRT624824 ACO1 aconitase 1 2 2
MIRT624908 CTCFL CCCTC-binding factor like 2 2
MIRT625154 ZCCHC8 zinc finger CCHC-type containing 8 2 4
MIRT625382 ZNF716 zinc finger protein 716 2 2
MIRT625771 RBM3 RNA binding motif (RNP1, RRM) protein 3 2 4
MIRT625808 POFUT1 protein O-fucosyltransferase 1 2 2
MIRT625835 NXPE2 neurexophilin and PC-esterase domain family member 2 2 2
MIRT626010 ZNF517 zinc finger protein 517 2 2
MIRT626058 AP3M1 adaptor related protein complex 3 mu 1 subunit 2 2
MIRT626116 IL23R interleukin 23 receptor 2 2
MIRT626252 RBM43 RNA binding motif protein 43 2 2
MIRT626350 PACS1 phosphofurin acidic cluster sorting protein 1 2 2
MIRT626888 ANGEL1 angel homolog 1 2 2
MIRT627303 WDR31 WD repeat domain 31 2 2
MIRT627597 SGK494 uncharacterized serine/threonine-protein kinase SgK494 2 2
MIRT627618 SF3B1 splicing factor 3b subunit 1 2 2
MIRT627630 SENP8 SUMO/sentrin peptidase family member, NEDD8 specific 2 2
MIRT627642 SEC23IP SEC23 interacting protein 2 2
MIRT627651 SAR1A secretion associated Ras related GTPase 1A 2 4
MIRT628388 CACNB2 calcium voltage-gated channel auxiliary subunit beta 2 2 2
MIRT628675 C2orf72 chromosome 2 open reading frame 72 2 2
MIRT628780 TMEM154 transmembrane protein 154 2 2
MIRT629181 ALDOA aldolase, fructose-bisphosphate A 2 2
MIRT629266 NXPE1 neurexophilin and PC-esterase domain family member 1 2 2
MIRT629307 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 1
MIRT629322 ZNF487P zinc finger protein 487 1 1
MIRT629524 ZNF37A zinc finger protein 37A 2 2
MIRT629611 NOL10 nucleolar protein 10 2 2
MIRT629659 NDUFV3 NADH:ubiquinone oxidoreductase subunit V3 2 2
MIRT629671 USP1 ubiquitin specific peptidase 1 2 2
MIRT629765 STK25 serine/threonine kinase 25 2 2
MIRT630447 IDE insulin degrading enzyme 2 2
MIRT630903 GATAD1 GATA zinc finger domain containing 1 2 2
MIRT631001 ZNF573 zinc finger protein 573 2 2
MIRT631157 CCBE1 collagen and calcium binding EGF domains 1 2 2
MIRT631178 HCAR1 hydroxycarboxylic acid receptor 1 2 2
MIRT631339 ZNF84 zinc finger protein 84 2 2
MIRT631342 LATS1 large tumor suppressor kinase 1 2 2
MIRT631359 ZFP30 ZFP30 zinc finger protein 2 4
MIRT631461 FBXO47 F-box protein 47 2 2
MIRT631585 ITGAL integrin subunit alpha L 2 2
MIRT631597 ACBD7 acyl-CoA binding domain containing 7 2 2
MIRT631643 WDR91 WD repeat domain 91 2 4
MIRT631781 IL17RA interleukin 17 receptor A 2 2
MIRT631858 PIGG phosphatidylinositol glycan anchor biosynthesis class G 2 2
MIRT632040 ZNF430 zinc finger protein 430 2 2
MIRT632094 SSR1 signal sequence receptor subunit 1 2 2
MIRT632153 CWC25 CWC25 spliceosome associated protein homolog 2 2
MIRT632234 VTA1 vesicle trafficking 1 2 2
MIRT632287 TTPAL alpha tocopherol transfer protein like 2 2
MIRT632328 TCEANC2 transcription elongation factor A N-terminal and central domain containing 2 2 2
MIRT632392 SLC4A1 solute carrier family 4 member 1 (Diego blood group) 2 2
MIRT632412 SLC30A5 solute carrier family 30 member 5 2 2
MIRT632557 PRPF38A pre-mRNA processing factor 38A 2 2
MIRT633066 DENND5B DENN domain containing 5B 2 2
MIRT633185 AAK1 AP2 associated kinase 1 2 2
MIRT633196 HSPE1-MOB4 HSPE1-MOB4 readthrough 2 2
MIRT633220 ZNF584 zinc finger protein 584 2 2
MIRT633343 GRK4 G protein-coupled receptor kinase 4 2 2
MIRT633407 ZNF566 zinc finger protein 566 2 2
MIRT633479 ZNF724P zinc finger protein 724 2 2
MIRT633485 ARIH2OS ariadne RBR E3 ubiquitin protein ligase 2 opposite strand 2 2
MIRT633516 LRRC27 leucine rich repeat containing 27 2 2
MIRT633556 DLEU1 deleted in lymphocytic leukemia 1 (non-protein coding) 2 2
MIRT633659 SLC28A1 solute carrier family 28 member 1 2 2
MIRT633681 ZNF576 zinc finger protein 576 2 2
MIRT633758 CENPBD1 CENPB DNA-binding domain containing 1 2 2
MIRT633771 SWSAP1 SWIM-type zinc finger 7 associated protein 1 2 2
MIRT633776 F2 coagulation factor II, thrombin 2 2
MIRT633803 ZNF91 zinc finger protein 91 2 2
MIRT633813 WDR92 WD repeat domain 92 2 2
MIRT633948 TMEM231 transmembrane protein 231 2 2
MIRT634000 RTN2 reticulon 2 2 2
MIRT634024 MOB4 MOB family member 4, phocein 2 2
MIRT634228 TMEM132B transmembrane protein 132B 2 2
MIRT634320 SLC43A2 solute carrier family 43 member 2 2 2
MIRT634355 RNF157 ring finger protein 157 2 2
MIRT634586 KIAA1958 KIAA1958 2 2
MIRT634748 CRCP CGRP receptor component 2 2
MIRT635409 KIAA1614 KIAA1614 2 2
MIRT635461 GBP4 guanylate binding protein 4 2 2
MIRT635501 CCR4 C-C motif chemokine receptor 4 2 2
MIRT635627 CDT1 chromatin licensing and DNA replication factor 1 2 4
MIRT635646 CMBL carboxymethylenebutenolidase homolog 2 2
MIRT635750 PIK3C2A phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha 2 2
MIRT635824 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT635969 TTC31 tetratricopeptide repeat domain 31 2 2
MIRT636121 YPEL1 yippee like 1 2 2
MIRT636171 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT636194 TCEB1 elongin C 2 2
MIRT636772 CLUAP1 clusterin associated protein 1 2 2
MIRT636799 CYB5D1 cytochrome b5 domain containing 1 2 2
MIRT636955 APTX aprataxin 2 2
MIRT637096 CXorf23 BCLAF1 and THRAP3 family member 3 2 2
MIRT637149 PCDHA6 protocadherin alpha 6 2 2
MIRT637207 MEAF6 MYST/Esa1 associated factor 6 2 2
MIRT637321 FAM9B family with sequence similarity 9 member B 2 2
MIRT637544 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT637632 ZNF431 zinc finger protein 431 2 2
MIRT637658 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT637704 ZNF439 zinc finger protein 439 2 2
MIRT637807 GGPS1 geranylgeranyl diphosphate synthase 1 2 2
MIRT637831 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT637907 FAM153B family with sequence similarity 153 member B 2 4
MIRT637953 IVD isovaleryl-CoA dehydrogenase 2 2
MIRT637974 IRF1 interferon regulatory factor 1 2 2
MIRT638026 FIG4 FIG4 phosphoinositide 5-phosphatase 2 2
MIRT638066 KCNN1 potassium calcium-activated channel subfamily N member 1 2 2
MIRT638197 TAOK1 TAO kinase 1 2 2
MIRT638403 PRR11 proline rich 11 2 2
MIRT638625 GSR glutathione-disulfide reductase 2 4
MIRT638651 GK5 glycerol kinase 5 (putative) 2 2
MIRT638993 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT639000 ADO 2-aminoethanethiol dioxygenase 2 2
MIRT642200 SMAGP small cell adhesion glycoprotein 2 2
MIRT642537 CERS4 ceramide synthase 4 2 2
MIRT643021 LETM2 leucine zipper and EF-hand containing transmembrane protein 2 2 2
MIRT643423 ERVMER34-1 endogenous retrovirus group MER34 member 1, envelope 2 2
MIRT643459 LAX1 lymphocyte transmembrane adaptor 1 2 4
MIRT643766 NAGK N-acetylglucosamine kinase 2 2
MIRT643892 IMP4 IMP4, U3 small nucleolar ribonucleoprotein 2 2
MIRT644097 SIAH3 siah E3 ubiquitin protein ligase family member 3 2 2
MIRT644680 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT644710 ZNF321P zinc finger protein 321, pseudogene 2 2
MIRT644726 SEPT14 septin 14 2 2
MIRT645138 HES2 hes family bHLH transcription factor 2 2 2
MIRT645314 AGTRAP angiotensin II receptor associated protein 2 2
MIRT645561 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT645737 POLR3A RNA polymerase III subunit A 2 2
MIRT646042 NPR1 natriuretic peptide receptor 1 2 2
MIRT646150 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 2 2
MIRT646362 PIGP phosphatidylinositol glycan anchor biosynthesis class P 2 2
MIRT646566 ALDH5A1 aldehyde dehydrogenase 5 family member A1 2 2
MIRT646871 NT5C2 5'-nucleotidase, cytosolic II 2 2
MIRT647022 NQO2 N-ribosyldihydronicotinamide:quinone reductase 2 2 2
MIRT647104 GNL3L G protein nucleolar 3 like 2 2
MIRT647363 WDR5B WD repeat domain 5B 2 2
MIRT648059 TRMT10C tRNA methyltransferase 10C, mitochondrial RNase P subunit 2 2
MIRT648088 FAM192A family with sequence similarity 192 member A 2 2
MIRT648152 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT648432 MYOZ3 myozenin 3 2 2
MIRT648451 LEAP2 liver enriched antimicrobial peptide 2 2 2
MIRT648920 ZNF551 zinc finger protein 551 2 2
MIRT649104 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT649109 RPL37 ribosomal protein L37 2 2
MIRT649259 IMPA2 inositol monophosphatase 2 2 2
MIRT649742 GNB5 G protein subunit beta 5 2 2
MIRT650092 TERF2 telomeric repeat binding factor 2 2 2
MIRT650578 TTR transthyretin 2 2
MIRT650739 FKTN fukutin 2 2
MIRT650871 APOH apolipoprotein H 2 2
MIRT651024 ZNF699 zinc finger protein 699 2 2
MIRT651391 ZBTB16 zinc finger and BTB domain containing 16 2 2
MIRT651526 WNT2B Wnt family member 2B 2 2
MIRT652640 TIMM10 translocase of inner mitochondrial membrane 10 2 2
MIRT653261 SOGA3 SOGA family member 3 2 2
MIRT653285 SMURF2 SMAD specific E3 ubiquitin protein ligase 2 2 2
MIRT653526 SLC38A9 solute carrier family 38 member 9 2 2
MIRT653708 SLC25A33 solute carrier family 25 member 33 2 2
MIRT653826 SHROOM4 shroom family member 4 2 2
MIRT653888 SGK3 serum/glucocorticoid regulated kinase family member 3 2 2
MIRT654217 RNF19B ring finger protein 19B 2 2
MIRT654848 PPM1K protein phosphatase, Mg2+/Mn2+ dependent 1K 2 2
MIRT655370 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 2 2
MIRT655520 PAG1 phosphoprotein membrane anchor with glycosphingolipid microdomains 1 2 2
MIRT656962 KIAA0408 KIAA0408 2 2
MIRT657048 KCNH6 potassium voltage-gated channel subfamily H member 6 2 2
MIRT657113 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT657198 IKZF3 IKAROS family zinc finger 3 2 2
MIRT657269 HSPA4L heat shock protein family A (Hsp70) member 4 like 2 2
MIRT657317 HOOK3 hook microtubule tethering protein 3 2 2
MIRT657365 HMGB1 high mobility group box 1 2 2
MIRT657522 GTF2H5 general transcription factor IIH subunit 5 2 4
MIRT657535 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT659037 DHTKD1 dehydrogenase E1 and transketolase domain containing 1 2 2
MIRT659590 CEP135 centrosomal protein 135 2 2
MIRT659801 CAV2 caveolin 2 2 2
MIRT659947 C8orf44-SGK3 C8orf44-SGK3 readthrough 2 2
MIRT660693 ANAPC1 anaphase promoting complex subunit 1 2 4
MIRT660951 ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 2 2
MIRT660989 ABHD2 abhydrolase domain containing 2 2 2
MIRT661410 GALNT6 polypeptide N-acetylgalactosaminyltransferase 6 2 2
MIRT661524 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT661752 ATM ATM serine/threonine kinase 2 2
MIRT662158 ALDH7A1 aldehyde dehydrogenase 7 family member A1 2 2
MIRT663363 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT663513 AGMO alkylglycerol monooxygenase 2 2
MIRT663533 ZNF70 zinc finger protein 70 2 2
MIRT663633 HM13 histocompatibility minor 13 2 2
MIRT663760 ZNF285 zinc finger protein 285 2 2
MIRT663841 TRIM72 tripartite motif containing 72 2 2
MIRT664024 C9orf139 chromosome 9 open reading frame 139 2 2
MIRT664049 ANKRD62 ankyrin repeat domain 62 2 2
MIRT664118 C4orf32 family with sequence similarity 241 member A 2 2
MIRT664280 RNMTL1 mitochondrial rRNA methyltransferase 3 2 2
MIRT664642 GALM galactose mutarotase 2 2
MIRT664685 EIF2B2 eukaryotic translation initiation factor 2B subunit beta 2 2
MIRT664764 MESDC2 mesoderm development LRP chaperone 2 2
MIRT665281 ZFP14 ZFP14 zinc finger protein 2 2
MIRT665874 TGOLN2 trans-golgi network protein 2 2 2
MIRT666194 SMCR8 Smith-Magenis syndrome chromosome region, candidate 8 2 2
MIRT666416 SH3D19 SH3 domain containing 19 2 2
MIRT666917 POC1A POC1 centriolar protein A 2 2
MIRT666946 PLSCR1 phospholipid scramblase 1 2 2
MIRT667064 PAOX polyamine oxidase 2 2
MIRT667090 OSTF1 osteoclast stimulating factor 1 2 2
MIRT667677 KPNA6 karyopherin subunit alpha 6 2 2
MIRT667790 KARS lysyl-tRNA synthetase 2 2
MIRT668268 FOXO3 forkhead box O3 2 2
MIRT668555 ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit 2 2
MIRT668830 CYCS cytochrome c, somatic 2 2
MIRT669087 CDX2 caudal type homeobox 2 2 2
MIRT669397 BACE2 beta-site APP-cleaving enzyme 2 2 4
MIRT669571 AKIRIN1 akirin 1 2 2
MIRT669761 ZNF101 zinc finger protein 101 2 2
MIRT669802 GAN gigaxonin 2 2
MIRT669811 STOML1 stomatin like 1 2 2
MIRT669869 MELK maternal embryonic leucine zipper kinase 2 2
MIRT669928 LRPAP1 LDL receptor related protein associated protein 1 2 2
MIRT669952 FBXL2 F-box and leucine rich repeat protein 2 2 2
MIRT670052 RPP14 ribonuclease P/MRP subunit p14 2 2
MIRT670100 CHCHD5 coiled-coil-helix-coiled-coil-helix domain containing 5 2 2
MIRT670302 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT670391 EMP2 epithelial membrane protein 2 2 2
MIRT670487 DCUN1D2 defective in cullin neddylation 1 domain containing 2 2 2
MIRT670537 KIF1C kinesin family member 1C 2 2
MIRT670608 NPHP1 nephrocystin 1 2 2
MIRT670789 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT670885 CYTIP cytohesin 1 interacting protein 2 2
MIRT670936 LIPG lipase G, endothelial type 2 2
MIRT671267 MTRNR2L5 MT-RNR2-like 5 2 2
MIRT671307 RABGAP1L RAB GTPase activating protein 1 like 2 2
MIRT671518 AP1S3 adaptor related protein complex 1 sigma 3 subunit 2 2
MIRT671628 C20orf144 chromosome 20 open reading frame 144 2 4
MIRT671683 ADK adenosine kinase 2 2
MIRT671786 RGS17 regulator of G protein signaling 17 2 2
MIRT671811 WISP3 WNT1 inducible signaling pathway protein 3 2 2
MIRT672006 SLC35F6 solute carrier family 35 member F6 2 4
MIRT672106 TLCD2 TLC domain containing 2 2 2
MIRT672238 ABHD15 abhydrolase domain containing 15 2 2
MIRT672274 SHE Src homology 2 domain containing E 2 2
MIRT672325 C9orf3 chromosome 9 open reading frame 3 2 2
MIRT672696 ZNF677 zinc finger protein 677 2 2
MIRT672817 VEZT vezatin, adherens junctions transmembrane protein 2 2
MIRT672863 C22orf29 retrotransposon Gag like 10 2 2
MIRT672891 FXN frataxin 2 2
MIRT672980 RRAD RRAD, Ras related glycolysis inhibitor and calcium channel regulator 2 2
MIRT673256 INO80 INO80 complex subunit 2 2
MIRT673400 WNT7B Wnt family member 7B 2 2
MIRT673527 ADRBK2 G protein-coupled receptor kinase 3 2 2
MIRT673544 DEGS1 delta 4-desaturase, sphingolipid 1 2 2
MIRT674004 KCNN3 potassium calcium-activated channel subfamily N member 3 2 2
MIRT674018 KCNJ6 potassium voltage-gated channel subfamily J member 6 2 2
MIRT674249 NUP62 nucleoporin 62 2 4
MIRT674358 SLC35E3 solute carrier family 35 member E3 2 2
MIRT674708 FAM73A mitoguardin 1 2 2
MIRT674911 CAPZA2 capping actin protein of muscle Z-line alpha subunit 2 2 2
MIRT675200 ZNF554 zinc finger protein 554 2 2
MIRT675295 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT675374 DCTN5 dynactin subunit 5 2 2
MIRT675446 TPCN2 two pore segment channel 2 2 2
MIRT675473 NUBPL nucleotide binding protein like 2 2
MIRT675672 TMOD2 tropomodulin 2 2 2
MIRT675684 SLC35F5 solute carrier family 35 member F5 2 2
MIRT675789 MED28 mediator complex subunit 28 2 2
MIRT675834 DHODH dihydroorotate dehydrogenase (quinone) 2 4
MIRT675979 FAM126B family with sequence similarity 126 member B 2 2
MIRT676090 DPP9 dipeptidyl peptidase 9 2 2
MIRT676100 ZNF667 zinc finger protein 667 2 2
MIRT676132 RSL1D1 ribosomal L1 domain containing 1 2 2
MIRT676171 HIST1H2BJ histone cluster 1 H2B family member j 2 2
MIRT676243 PARP2 poly(ADP-ribose) polymerase 2 2 2
MIRT676293 SLC25A37 solute carrier family 25 member 37 2 2
MIRT676310 GTF2H2C GTF2H2 family member C 2 2
MIRT676341 PCCB propionyl-CoA carboxylase beta subunit 2 2
MIRT676389 SEC24D SEC24 homolog D, COPII coat complex component 2 2
MIRT676441 PLEKHM3 pleckstrin homology domain containing M3 2 2
MIRT676520 RNF216 ring finger protein 216 2 2
MIRT676584 RDH13 retinol dehydrogenase 13 2 4
MIRT676611 KDSR 3-ketodihydrosphingosine reductase 2 2
MIRT676692 LAIR1 leukocyte associated immunoglobulin like receptor 1 2 2
MIRT676699 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT676745 SGTB small glutamine rich tetratricopeptide repeat containing beta 2 2
MIRT676765 SNX2 sorting nexin 2 2 2
MIRT676778 NPHS1 NPHS1, nephrin 2 2
MIRT676799 RILPL1 Rab interacting lysosomal protein like 1 2 2
MIRT676859 TTC4 tetratricopeptide repeat domain 4 2 2
MIRT676881 ENSA endosulfine alpha 2 2
MIRT676948 S1PR3 sphingosine-1-phosphate receptor 3 2 2
MIRT676962 HFE hemochromatosis 2 2
MIRT677010 HINFP histone H4 transcription factor 2 2
MIRT677049 ZNF34 zinc finger protein 34 2 2
MIRT677075 VMAC vimentin type intermediate filament associated coiled-coil protein 2 2
MIRT677097 MFSD11 major facilitator superfamily domain containing 11 2 4
MIRT677130 OGFOD3 2-oxoglutarate and iron dependent oxygenase domain containing 3 2 2
MIRT677170 ZNF786 zinc finger protein 786 2 2
MIRT677219 RASSF6 Ras association domain family member 6 2 2
MIRT677238 C15orf40 chromosome 15 open reading frame 40 2 2
MIRT677408 ARPC2 actin related protein 2/3 complex subunit 2 2 2
MIRT677428 DDX19B DEAD-box helicase 19B 2 2
MIRT677436 NSMCE2 NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase 2 2
MIRT677467 PDLIM3 PDZ and LIM domain 3 2 2
MIRT677489 GTF2H2 general transcription factor IIH subunit 2 2 2
MIRT677555 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT677583 TRIM65 tripartite motif containing 65 2 2
MIRT677602 PRKX protein kinase, X-linked 2 2
MIRT677650 HAUS2 HAUS augmin like complex subunit 2 2 2
MIRT677702 GINS2 GINS complex subunit 2 2 2
MIRT677764 GRM6 glutamate metabotropic receptor 6 2 2
MIRT677788 CEACAM5 carcinoembryonic antigen related cell adhesion molecule 5 2 2
MIRT677814 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT677891 DCP1A decapping mRNA 1A 2 2
MIRT677921 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT677944 ZNF519 zinc finger protein 519 2 2
MIRT677989 GATC glutamyl-tRNA amidotransferase subunit C 2 2
MIRT678015 SPIC Spi-C transcription factor 2 2
MIRT678068 UBN2 ubinuclein 2 2 2
MIRT678084 EIF2A eukaryotic translation initiation factor 2A 2 2
MIRT678128 METTL21A methyltransferase like 21A 2 2
MIRT678147 SLC4A4 solute carrier family 4 member 4 2 2
MIRT678156 IRGQ immunity related GTPase Q 2 2
MIRT678224 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT678327 FBLIM1 filamin binding LIM protein 1 2 2
MIRT678357 PPAP2B phospholipid phosphatase 3 2 2
MIRT678401 MYPN myopalladin 2 2
MIRT678421 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678434 PDE4C phosphodiesterase 4C 2 2
MIRT678444 PARD6G par-6 family cell polarity regulator gamma 2 2
MIRT678493 ARHGEF39 Rho guanine nucleotide exchange factor 39 2 2
MIRT678507 LCTL lactase like 2 2
MIRT678526 P2RX7 purinergic receptor P2X 7 2 2
MIRT678534 TMEM78 transmembrane protein 78 2 2
MIRT678570 CDK4 cyclin dependent kinase 4 2 2
MIRT678608 MRPL17 mitochondrial ribosomal protein L17 2 2
MIRT678642 PDCD4 programmed cell death 4 2 2
MIRT678702 TRIP11 thyroid hormone receptor interactor 11 2 2
MIRT678724 SRCAP Snf2 related CREBBP activator protein 2 2
MIRT678764 CEP76 centrosomal protein 76 2 2
MIRT678814 HRH4 histamine receptor H4 2 2
MIRT678880 FAM118A family with sequence similarity 118 member A 2 2
MIRT678905 TTLL12 tubulin tyrosine ligase like 12 2 2
MIRT678946 MYADM myeloid associated differentiation marker 2 2
MIRT678960 ZNF329 zinc finger protein 329 2 2
MIRT678972 OGFOD1 2-oxoglutarate and iron dependent oxygenase domain containing 1 2 2
MIRT679067 KREMEN1 kringle containing transmembrane protein 1 2 2
MIRT679072 MANEAL mannosidase endo-alpha like 2 2
MIRT679084 PURB purine rich element binding protein B 2 2
MIRT679115 NMNAT1 nicotinamide nucleotide adenylyltransferase 1 2 2
MIRT679155 ZDHHC15 zinc finger DHHC-type containing 15 2 2
MIRT679177 FFAR4 free fatty acid receptor 4 2 2
MIRT679183 XIAP X-linked inhibitor of apoptosis 2 4
MIRT679224 MAN2A2 mannosidase alpha class 2A member 2 2 2
MIRT679234 LRP10 LDL receptor related protein 10 2 2
MIRT679271 POLM DNA polymerase mu 2 2
MIRT679279 MIPOL1 mirror-image polydactyly 1 2 2
MIRT679345 PPP1R3B protein phosphatase 1 regulatory subunit 3B 2 2
MIRT679352 LRG1 leucine rich alpha-2-glycoprotein 1 2 2
MIRT679365 SIK2 salt inducible kinase 2 2 2
MIRT679493 ZNF106 zinc finger protein 106 2 2
MIRT679600 HILPDA hypoxia inducible lipid droplet associated 2 2
MIRT679636 BRMS1L breast cancer metastasis-suppressor 1 like 2 2
MIRT679650 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT679713 RPL24 ribosomal protein L24 2 2
MIRT679762 TLR6 toll like receptor 6 2 2
MIRT679766 DSN1 DSN1 homolog, MIS12 kinetochore complex component 2 2
MIRT679807 APOBEC3A apolipoprotein B mRNA editing enzyme catalytic subunit 3A 2 2
MIRT679821 TMEM106B transmembrane protein 106B 2 2
MIRT679949 AS3MT arsenite methyltransferase 2 2
MIRT679967 FGFR1OP FGFR1 oncogene partner 2 2
MIRT679992 RUNDC1 RUN domain containing 1 2 2
MIRT680063 CD96 CD96 molecule 2 2
MIRT680079 THAP1 THAP domain containing 1 2 2
MIRT680100 PXMP4 peroxisomal membrane protein 4 2 2
MIRT680138 MRE11A MRE11 homolog, double strand break repair nuclease 2 2
MIRT680146 TOP3A DNA topoisomerase III alpha 2 2
MIRT680324 LRRC58 leucine rich repeat containing 58 2 2
MIRT680414 RNF165 ring finger protein 165 2 2
MIRT680451 PDE6A phosphodiesterase 6A 2 2
MIRT680460 TAS2R5 taste 2 receptor member 5 2 2
MIRT683249 WFDC6 WAP four-disulfide core domain 6 2 2
MIRT685083 HPSE heparanase 2 2
MIRT686255 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT687366 NUP155 nucleoporin 155 2 2
MIRT688320 FAM151B family with sequence similarity 151 member B 2 2
MIRT688390 ENAH ENAH, actin regulator 2 2
MIRT688430 DNAL1 dynein axonemal light chain 1 2 2
MIRT688643 CREM cAMP responsive element modulator 2 2
MIRT688739 CNDP1 carnosine dipeptidase 1 2 2
MIRT689335 FPR1 formyl peptide receptor 1 2 4
MIRT690685 PTCHD3 patched domain containing 3 2 2
MIRT690956 APOL1 apolipoprotein L1 2 2
MIRT691727 LARS leucyl-tRNA synthetase 2 2
MIRT693472 ZNF707 zinc finger protein 707 2 2
MIRT693959 HNRNPA1L2 heterogeneous nuclear ribonucleoprotein A1-like 2 2 2
MIRT695487 TRAT1 T-cell receptor associated transmembrane adaptor 1 2 2
MIRT696596 ORMDL2 ORMDL sphingolipid biosynthesis regulator 2 2 2
MIRT697024 EPDR1 ependymin related 1 2 2
MIRT698140 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT699106 SNIP1 Smad nuclear interacting protein 1 2 2
MIRT699817 SCN2B sodium voltage-gated channel beta subunit 2 2 2
MIRT701535 NCKAP1 NCK associated protein 1 2 2
MIRT702897 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT705035 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT706023 ZSCAN2 zinc finger and SCAN domain containing 2 2 2
MIRT706039 F2R coagulation factor II thrombin receptor 2 2
MIRT706102 ENTPD4 ectonucleoside triphosphate diphosphohydrolase 4 2 2
MIRT706311 CCDC30 coiled-coil domain containing 30 2 2
MIRT706345 STAC2 SH3 and cysteine rich domain 2 2 2
MIRT706400 HAS2 hyaluronan synthase 2 2 2
MIRT706436 LIAS lipoic acid synthetase 2 2
MIRT709396 QRFPR pyroglutamylated RFamide peptide receptor 2 2
MIRT710345 ZNF669 zinc finger protein 669 2 2
MIRT710725 C19orf68 zinc finger SWIM-type containing 9 2 2
MIRT711276 SDR9C7 short chain dehydrogenase/reductase family 9C member 7 2 2
MIRT711862 TRAF2 TNF receptor associated factor 2 2 2
MIRT711921 AKR7A2 aldo-keto reductase family 7 member A2 2 2
MIRT712060 ZBTB34 zinc finger and BTB domain containing 34 2 2
MIRT712593 ADCYAP1 adenylate cyclase activating polypeptide 1 2 2
MIRT712903 TGFA transforming growth factor alpha 2 2
MIRT713297 DCP2 decapping mRNA 2 2 2
MIRT714801 WDPCP WD repeat containing planar cell polarity effector 2 2
MIRT715314 POLR2E RNA polymerase II subunit E 2 2
MIRT715727 PIAS2 protein inhibitor of activated STAT 2 2 2
MIRT717606 DSTYK dual serine/threonine and tyrosine protein kinase 2 2
MIRT717877 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT718484 TMEM151A transmembrane protein 151A 2 2
MIRT720439 C19orf47 chromosome 19 open reading frame 47 2 2
MIRT721563 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT721698 TFAP2B transcription factor AP-2 beta 2 2
MIRT722525 PLXNA2 plexin A2 2 2
MIRT722758 SIRPB2 signal regulatory protein beta 2 2 2
MIRT723297 MOGAT1 monoacylglycerol O-acyltransferase 1 2 2
MIRT723407 NLRP10 NLR family pyrin domain containing 10 2 2
MIRT724218 RAB6B RAB6B, member RAS oncogene family 2 2
MIRT724422 FGF2 fibroblast growth factor 2 2 2
MIRT756017 AMBRA1 autophagy and beclin 1 regulator 1 3 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-3653 Ginsenoside Rh2 NULL 119307 Microarray NSCLC cell line A549 23152132 2013 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3653 Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (SKOV3)
hsa-miR-3653 Fluorouracil 3385 NSC19893 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-3653 Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-3653 Plx-4720 24180719 NSC757438 resistant High Thyroid Cancer cell line (8505c, BCPAP)
hsa-miR-3653 Platinum 23939 resistant High Ovarian Cancer tissue
hsa-miR-3653 Cisplatin 5460033 NSC119875 approved sensitive cell line (CAL-27) (cytosolic RNA)
hsa-miR-3653 Cisplatin 5460033 NSC119875 approved sensitive cell line (CP20)
hsa-miR-3653 Cisplatin 5460033 NSC119875 approved sensitive cell line (CIS)
hsa-miR-3653 Platinum 23939 resistant tissue (non-small cell lung cancer)
hsa-miR-3653 Platinum 23939 resistant tissue
hsa-miR-3653 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3653 Vemurafenib 42611257 NSC761431 approved sensitive cell line (LM16)
hsa-miR-3653-5p Docetaxel 148124 NSC628503 approved resistant High Breast Cancer cell line (MDA-MB-231, MCF-7)
hsa-miR-3653-5p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)

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