pre-miRNA Information
pre-miRNA hsa-mir-3915   
Genomic Coordinates chrX: 32583656 - 32583752
Description Homo sapiens miR-3915 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3915
Sequence 21| UUGAGGAAAAGAUGGUCUUAUU |42
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs997323565 10 dbSNP
rs1192161547 15 dbSNP
rs1255075246 19 dbSNP
rs1452812574 20 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol FLCN   
Synonyms BHD, FLCL
Description folliculin
Transcript NM_144997   
Other Transcripts NM_144606   
Expression
Putative miRNA Targets on FLCN
3'UTR of FLCN
(miRNA target sites are highlighted)
>FLCN|NM_144997|3'UTR
   1 CCCGTCACACACACCTGCCTAAAGACAGGGATGGCTGTCCACAGGATCCTCCAGCCCCGTGAGAGGGACTGTCCCTTGAG
  81 TTTCTCAACTGCTGGAAGGAGCTGTGTCCCAGCAAGGAAGGGAAACCATCAGGGCTGGGCTCGGCCCTGTCAGGTTTGGG
 161 GCCTGTGTGCTTCCCAGACTCTCCCTCCAGCCGTTGGAATCGCTGAAGATGGCAATGAAAGGCGGAGGGATGATGGGCTC
 241 TCTCTGTGTTCAAACTCCTTGGAGAGACGACTAGGAGGACAGCTTGCCTCCCAGGCCCCTTGTGGACTTAGACTCAAAAC
 321 CCGCAGGAGAAACAGGTCCGACTCAGTATGCAGTCGCAATAACATGTCTGCTCCCGAGGTTAACATTCAAGCGTTTCTAC
 401 TTTGAAATTCAGCAAGAGTTTCTGGGCCTTATGTTTGAGGGTACCTTTTGCTGCAGTTGTGAATATTCAGTACATTGCCA
 481 GCTCTTGGTCACTGAGTGATTGAGTTAGGGCTCCGCAAGAGACTTTGGGGAGTGAAGTGGATCTCTTCCTCATCTTTTGG
 561 TCCTCTGAAATGTGTGTTCTGAAGCCATGGGGCTCGTCTTCTGGGGTGTTCCCCTGCAGGTGCTGGTGAAGGTAACCTGG
 641 GGCTTAATGATGGAGTCCCTGATCATTTTTGCACAAGACAGGTTGCTGAGGGGTCGGCAAGCATCTGACTTGCCCAATCC
 721 CCTGGATATGGTGAGCCCCGCCATGCTTTTATTCTGTATCGCTTTTGTCTTTATTGCTGCTTTCAACATTTACGTTTGGT
 801 TACAGTTAACTATTTTCGGAGTGTGGTGATTGAAGACAATTTCATCATCCCACTGTACTTTTTTTTTTGAGAGGGAGTTT
 881 CACTCTTGTTGCCCAGGCTGGAGTGCAATGGCACGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCT
 961 CCTGCCTCAGCCTCCAGAGTAGCTGGAACTACAGGTGCCCGCCACTATGCCCAGCTAATTTTTGTATTTTTTAGTAGAGA
1041 CGGGGTTTCACCGTGTTGGCCGGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCACCCACCTCAGCCTCCCAAAGTGCT
1121 GGGATTACAAGCGTGAGCCACTGTGCCTGGCCCTTTTTTTTTTTTTTTTTTTTTTTTTTAAAGAGATGGCATCTTGCTAT
1201 GTCGTCCAGGCTGGTCTTGAACTCCTGAGTTCAAGCAGTCCTCCTGCTTCAACATACAGCTACAGGTACCCCCCACTATA
1281 CATTTTTAATAAGGATTCATGGCTCAGAGGGATTTTCTGATGGTTTTGCTGATTTGTTTCTAGTTTTTTTGTGTTTATAT
1361 TTAACATGAAGACCAAGTTTATATAACTAGGTATCTGTATAATGCAACAACATTGGAACACAATAAAGATGTATTTTTGT
1441 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uuaUUCUGGUAGAAAAGGAGUu 5'
             |||   |||| ||||||| 
Target 5' gtgAAGTGGATCTCTTCCTCAt 3'
532 - 553 163.00 -13.40
2
miRNA  3' uuaUUCUGGUA--GAA---AAGGAGUu 5'
             ::|||::|  |||   ||:|||| 
Target 5' agaGGGACTGTCCCTTGAGTTTCTCAa 3'
62 - 88 141.00 -12.70
3
miRNA  3' uuaUUCUGGUAGAAAAGGAGUu 5'
             ||||| |   |||| ||| 
Target 5' ttgAAGACAA---TTTCATCAt 3'
830 - 848 128.00 -6.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
1196117 1 ClinVar
888566 4 ClinVar
485622 5 ClinVar
387053 17 ClinVar
892029 29 ClinVar
892028 140 ClinVar
322060 178 ClinVar
892027 178 ClinVar
1209300 223 ClinVar
322059 224 ClinVar
322058 290 ClinVar
322057 333 ClinVar
890789 339 ClinVar
322056 340 ClinVar
322055 356 ClinVar
322054 379 ClinVar
322053 393 ClinVar
322052 425 ClinVar
322051 442 ClinVar
322050 526 ClinVar
322049 528 ClinVar
322048 557 ClinVar
322047 634 ClinVar
322046 695 ClinVar
322045 697 ClinVar
322044 739 ClinVar
890749 846 ClinVar
322043 887 ClinVar
322042 911 ClinVar
322041 914 ClinVar
890168 915 ClinVar
322040 956 ClinVar
322039 967 ClinVar
889506 1035 ClinVar
889505 1101 ClinVar
322038 1179 ClinVar
322037 1180 ClinVar
322036 1183 ClinVar
322035 1273 ClinVar
322034 1336 ClinVar
322033 1403 ClinVar
COSN31564616 3 COSMIC
COSN30163220 59 COSMIC
COSN30158593 85 COSMIC
COSN30449548 108 COSMIC
COSN31546023 137 COSMIC
COSN20078782 142 COSMIC
COSN7161117 625 COSMIC
COSN15661882 961 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs759292330 1 dbSNP
rs774091922 3 dbSNP
rs770795599 4 dbSNP
rs773168989 8 dbSNP
rs1421378146 9 dbSNP
rs1361073991 10 dbSNP
rs917395163 13 dbSNP
rs748379299 14 dbSNP
rs115885284 17 dbSNP
rs370269600 18 dbSNP
rs1189817112 29 dbSNP
rs747413239 30 dbSNP
rs780520253 32 dbSNP
rs149134801 35 dbSNP
rs1366249931 41 dbSNP
rs750934121 42 dbSNP
rs1287367336 43 dbSNP
rs1216575721 50 dbSNP
rs777203555 51 dbSNP
rs866040447 52 dbSNP
rs111861140 53 dbSNP
rs948518342 57 dbSNP
rs535022712 58 dbSNP
rs1219671650 59 dbSNP
rs778606717 87 dbSNP
rs754626617 88 dbSNP
rs564383830 91 dbSNP
rs1202837609 94 dbSNP
rs917120791 95 dbSNP
rs943384046 102 dbSNP
rs1305305051 103 dbSNP
rs1466017966 107 dbSNP
rs1190387837 108 dbSNP
rs1240940994 111 dbSNP
rs1478076126 127 dbSNP
rs1398614758 128 dbSNP
rs1432120366 133 dbSNP
rs1468536104 134 dbSNP
rs1176224073 136 dbSNP
rs1389640765 138 dbSNP
rs992529336 142 dbSNP
rs934434916 143 dbSNP
rs924284722 152 dbSNP
rs1289686215 154 dbSNP
rs1437313452 158 dbSNP
rs1455355430 159 dbSNP
rs978811637 160 dbSNP
rs1222655390 161 dbSNP
rs968429683 174 dbSNP
rs1268598385 176 dbSNP
rs145430714 178 dbSNP
rs957192560 192 dbSNP
rs144507152 193 dbSNP
rs1451635916 196 dbSNP
rs771890381 198 dbSNP
rs1200424088 199 dbSNP
rs1271654664 200 dbSNP
rs975029687 202 dbSNP
rs1480711052 215 dbSNP
rs1431409574 218 dbSNP
rs541599658 220 dbSNP
rs76272341 223 dbSNP
rs541003301 224 dbSNP
rs1471370335 230 dbSNP
rs1156999411 232 dbSNP
rs1261913266 237 dbSNP
rs1406000369 239 dbSNP
rs1305090827 242 dbSNP
rs971577575 246 dbSNP
rs1206559680 247 dbSNP
rs774288275 253 dbSNP
rs564245440 255 dbSNP
rs1337257243 257 dbSNP
rs1236652270 259 dbSNP
rs1012564617 262 dbSNP
rs1356672071 267 dbSNP
rs180873537 268 dbSNP
rs1324886664 288 dbSNP
rs886052660 290 dbSNP
rs1222327304 291 dbSNP
rs1033899157 297 dbSNP
rs1421212970 302 dbSNP
rs1180162633 305 dbSNP
rs995213015 310 dbSNP
rs1165704176 311 dbSNP
rs899167633 320 dbSNP
rs139734855 321 dbSNP
rs1424120563 322 dbSNP
rs571999061 323 dbSNP
rs1389438778 325 dbSNP
rs1012819901 328 dbSNP
rs750896108 333 dbSNP
rs1312482683 339 dbSNP
rs886052659 340 dbSNP
rs554190238 344 dbSNP
rs7224474 356 dbSNP
rs1252435395 357 dbSNP
rs924327954 359 dbSNP
rs1194446230 365 dbSNP
rs1250340118 368 dbSNP
rs1042823154 375 dbSNP
rs117436649 379 dbSNP
rs1241498054 382 dbSNP
rs1168450599 384 dbSNP
rs1444119063 385 dbSNP
rs12602675 393 dbSNP
rs1373450930 398 dbSNP
rs974975943 399 dbSNP
rs1460342428 400 dbSNP
rs188840802 403 dbSNP
rs7224335 425 dbSNP
rs1402716979 427 dbSNP
rs935955441 430 dbSNP
rs1277909850 432 dbSNP
rs1381532658 432 dbSNP
rs1435212228 440 dbSNP
rs7224213 442 dbSNP
rs977629513 462 dbSNP
rs1225956734 468 dbSNP
rs1183658881 479 dbSNP
rs146851795 480 dbSNP
rs574471240 482 dbSNP
rs1462280203 484 dbSNP
rs1265476834 487 dbSNP
rs1205928928 495 dbSNP
rs988015663 496 dbSNP
rs778371655 500 dbSNP
rs1241557031 502 dbSNP
rs537259057 510 dbSNP
rs1026777733 514 dbSNP
rs994970871 515 dbSNP
rs1252230391 517 dbSNP
rs1426798050 518 dbSNP
rs963700738 521 dbSNP
rs1378100457 524 dbSNP
rs574547835 526 dbSNP
rs1012768985 527 dbSNP
rs184006653 528 dbSNP
rs181935335 540 dbSNP
rs1056992450 542 dbSNP
rs952429267 545 dbSNP
rs1290259260 549 dbSNP
rs3803761 557 dbSNP
rs903021698 562 dbSNP
rs1329164033 574 dbSNP
rs1295540065 576 dbSNP
rs566100851 580 dbSNP
rs1390724176 587 dbSNP
rs1225751464 591 dbSNP
rs1397171560 595 dbSNP
rs1323267954 596 dbSNP
rs1040401893 599 dbSNP
rs1484956113 608 dbSNP
rs1169421566 620 dbSNP
rs889112411 625 dbSNP
rs199572622 634 dbSNP
rs780240981 638 dbSNP
rs947184141 640 dbSNP
rs1163838088 641 dbSNP
rs1445883351 643 dbSNP
rs935920439 649 dbSNP
rs924500249 670 dbSNP
rs1041638151 671 dbSNP
rs1293544961 672 dbSNP
rs1366738460 674 dbSNP
rs539709518 680 dbSNP
rs1345328378 682 dbSNP
rs920912515 688 dbSNP
rs1180534095 691 dbSNP
rs1309460336 694 dbSNP
rs775700421 695 dbSNP
rs943697642 696 dbSNP
rs886052658 697 dbSNP
rs1220232402 698 dbSNP
rs991236394 700 dbSNP
rs1197864163 703 dbSNP
rs1357744539 711 dbSNP
rs189888135 714 dbSNP
rs550746288 717 dbSNP
rs1163823026 721 dbSNP
rs937098560 722 dbSNP
rs1422189820 725 dbSNP
rs909539407 733 dbSNP
rs912113115 736 dbSNP
rs558952732 739 dbSNP
rs530771625 741 dbSNP
rs951094974 757 dbSNP
rs1361921451 760 dbSNP
rs1026941756 761 dbSNP
rs1223496665 763 dbSNP
rs972349338 768 dbSNP
rs966172286 769 dbSNP
rs1019110164 770 dbSNP
rs143768653 786 dbSNP
rs919468352 793 dbSNP
rs139529824 794 dbSNP
rs963455195 802 dbSNP
rs1183871928 803 dbSNP
rs1364769888 809 dbSNP
rs1033116770 818 dbSNP
rs770643935 821 dbSNP
rs750900491 828 dbSNP
rs1426141540 837 dbSNP
rs1378141269 844 dbSNP
rs1157480015 847 dbSNP
rs1470252519 849 dbSNP
rs185759963 850 dbSNP
rs1184638443 852 dbSNP
rs748168795 852 dbSNP
rs1489947538 854 dbSNP
rs991422285 860 dbSNP
rs1337678395 869 dbSNP
rs1353176601 869 dbSNP
rs1446473916 869 dbSNP
rs1268597857 878 dbSNP
rs1223734599 886 dbSNP
rs886052657 887 dbSNP
rs1042019775 888 dbSNP
rs1362746014 891 dbSNP
rs1216318118 900 dbSNP
rs1035535196 905 dbSNP
rs1270770920 906 dbSNP
rs571893996 911 dbSNP
rs7223831 914 dbSNP
rs1021480303 915 dbSNP
rs1459653977 925 dbSNP
rs1351505864 932 dbSNP
rs1182446660 940 dbSNP
rs1011841230 946 dbSNP
rs937173603 951 dbSNP
rs1344859544 952 dbSNP
rs909597510 954 dbSNP
rs1465455946 955 dbSNP
rs141650706 956 dbSNP
rs1408582090 961 dbSNP
rs1468497751 964 dbSNP
rs1333739866 966 dbSNP
rs886052656 967 dbSNP
rs1406616542 974 dbSNP
rs1039479974 976 dbSNP
rs1432937711 977 dbSNP
rs1268373053 978 dbSNP
rs1339699344 981 dbSNP
rs1223906060 984 dbSNP
rs1358220087 984 dbSNP
rs1317199245 985 dbSNP
rs1400743305 986 dbSNP
rs929595318 989 dbSNP
rs1202699948 995 dbSNP
rs1284486821 998 dbSNP
rs943645264 1000 dbSNP
rs532627636 1001 dbSNP
rs1240882762 1007 dbSNP
rs1479722705 1011 dbSNP
rs1429281241 1013 dbSNP
rs879377193 1027 dbSNP
rs1431977479 1034 dbSNP
rs566019526 1035 dbSNP
rs972285089 1036 dbSNP
rs1052438501 1038 dbSNP
rs1402546171 1044 dbSNP
rs563644388 1045 dbSNP
rs866377403 1052 dbSNP
rs1359825359 1053 dbSNP
rs1405551246 1059 dbSNP
rs867735833 1061 dbSNP
rs771952210 1062 dbSNP
rs1215379162 1086 dbSNP
rs973574118 1087 dbSNP
rs543608114 1101 dbSNP
rs1286409348 1111 dbSNP
rs574733214 1115 dbSNP
rs953574331 1116 dbSNP
rs991538455 1118 dbSNP
rs1223949299 1130 dbSNP
rs960030868 1132 dbSNP
rs1035720677 1133 dbSNP
rs977721165 1137 dbSNP
rs967295683 1138 dbSNP
rs1021972178 1140 dbSNP
rs1364611964 1148 dbSNP
rs62064407 1151 dbSNP
rs1263743330 1152 dbSNP
rs1225060378 1153 dbSNP
rs1011380772 1154 dbSNP
rs397932764 1154 dbSNP
rs1359641229 1157 dbSNP
rs1269174337 1166 dbSNP
rs1363591112 1169 dbSNP
rs1386024346 1174 dbSNP
rs1430981286 1177 dbSNP
rs903180933 1178 dbSNP
rs540609895 1179 dbSNP
rs1165490742 1180 dbSNP
rs1179983915 1180 dbSNP
rs1209620594 1180 dbSNP
rs1237762885 1180 dbSNP
rs1247482269 1180 dbSNP
rs1251772130 1180 dbSNP
rs1294804180 1180 dbSNP
rs1308047114 1180 dbSNP
rs1341955816 1180 dbSNP
rs1354788469 1180 dbSNP
rs1359584232 1180 dbSNP
rs1383314669 1180 dbSNP
rs1439904394 1180 dbSNP
rs1445344128 1180 dbSNP
rs1457407913 1180 dbSNP
rs886052655 1180 dbSNP
rs199535675 1183 dbSNP
rs1405915833 1189 dbSNP
rs1257684517 1200 dbSNP
rs1177790647 1202 dbSNP
rs1018033454 1203 dbSNP
rs1020309073 1204 dbSNP
rs1417846103 1208 dbSNP
rs1241424535 1209 dbSNP
rs1008014224 1225 dbSNP
rs747663295 1234 dbSNP
rs1046751595 1240 dbSNP
rs554751440 1244 dbSNP
rs541543491 1246 dbSNP
rs895708601 1257 dbSNP
rs898049182 1266 dbSNP
rs1038369584 1269 dbSNP
rs886052654 1273 dbSNP
rs1169623306 1274 dbSNP
rs1406362642 1275 dbSNP
rs1470789553 1275 dbSNP
rs572462992 1289 dbSNP
rs1334265584 1297 dbSNP
rs558869941 1298 dbSNP
rs1400924800 1309 dbSNP
rs1382264756 1319 dbSNP
rs942166518 1327 dbSNP
rs1055741450 1328 dbSNP
rs7218992 1336 dbSNP
rs1217189703 1351 dbSNP
rs888293043 1351 dbSNP
rs11654407 1352 dbSNP
rs1205505222 1354 dbSNP
rs1048609315 1364 dbSNP
rs754539748 1366 dbSNP
rs1271985679 1367 dbSNP
rs929779715 1371 dbSNP
rs1205740682 1383 dbSNP
rs1263777896 1387 dbSNP
rs938789740 1388 dbSNP
rs570755484 1390 dbSNP
rs557330837 1393 dbSNP
rs977418871 1396 dbSNP
rs967788964 1401 dbSNP
rs7218795 1403 dbSNP
rs1451192210 1404 dbSNP
rs990104775 1407 dbSNP
rs1382927221 1408 dbSNP
rs1290050752 1410 dbSNP
rs568272777 1412 dbSNP
rs912122393 1413 dbSNP
rs1398763186 1423 dbSNP
rs1298101240 1430 dbSNP
rs963864754 1433 dbSNP
rs1018149730 1438 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' uuauucuggUAGAAAAGGAGUu 5'
                   |||| ||||||| 
Target 5' ---------AUCUCUUCCUCAu 3'
1 - 13
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000285071.4 | 3UTR | AUCUCUUCCUCAUCUUUUGGUCCUCUGAAAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
111 hsa-miR-3915 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059544 PIP5K1A phosphatidylinositol-4-phosphate 5-kinase type 1 alpha 2 2
MIRT081703 ZNF507 zinc finger protein 507 2 2
MIRT083311 ZCCHC3 zinc finger CCHC-type containing 3 2 6
MIRT119046 SFT2D3 SFT2 domain containing 3 2 2
MIRT189381 TXLNA taxilin alpha 2 4
MIRT195895 C16ORF72 chromosome 16 open reading frame 72 2 6
MIRT223807 OXR1 oxidation resistance 1 2 2
MIRT292954 ZNF146 zinc finger protein 146 2 4
MIRT293949 RPL13A ribosomal protein L13a 2 6
MIRT300900 KREMEN1 kringle containing transmembrane protein 1 2 2
MIRT339332 SESN2 sestrin 2 2 2
MIRT349304 ZNF317 zinc finger protein 317 2 2
MIRT364736 TOR1B torsin family 1 member B 2 2
MIRT366233 VMA21 VMA21, vacuolar ATPase assembly factor 2 2
MIRT384605 CLIC4 chloride intracellular channel 4 2 2
MIRT401745 HLA-DRA major histocompatibility complex, class II, DR alpha 2 2
MIRT443169 UBL3 ubiquitin like 3 2 2
MIRT444215 METTL12 methyltransferase like 12 2 2
MIRT444375 SH3TC2 SH3 domain and tetratricopeptide repeats 2 2 2
MIRT445340 TCEANC transcription elongation factor A N-terminal and central domain containing 2 2
MIRT445474 KDM6A lysine demethylase 6A 2 2
MIRT445598 CAMK2N1 calcium/calmodulin dependent protein kinase II inhibitor 1 2 2
MIRT445630 TMEM50A transmembrane protein 50A 2 2
MIRT446012 VNN1 vanin 1 2 2
MIRT446115 ASTN1 astrotactin 1 2 2
MIRT446248 ELP2 elongator acetyltransferase complex subunit 2 2 2
MIRT446382 SYNCRIP synaptotagmin binding cytoplasmic RNA interacting protein 2 2
MIRT446940 ZMAT3 zinc finger matrin-type 3 2 2
MIRT446967 SLCO4C1 solute carrier organic anion transporter family member 4C1 2 2
MIRT447178 PGRMC2 progesterone receptor membrane component 2 2 2
MIRT447209 APBB2 amyloid beta precursor protein binding family B member 2 2 2
MIRT447237 IHH indian hedgehog 2 2
MIRT447807 EMX1 empty spiracles homeobox 1 2 2
MIRT447853 RRP8 ribosomal RNA processing 8 2 4
MIRT448054 MMP15 matrix metallopeptidase 15 2 2
MIRT448094 RASD2 RASD family member 2 2 2
MIRT448704 KLHL11 kelch like family member 11 2 2
MIRT448851 FEM1C fem-1 homolog C 2 2
MIRT449488 ZBTB4 zinc finger and BTB domain containing 4 2 2
MIRT449785 C1orf109 chromosome 1 open reading frame 109 2 2
MIRT450774 PDE3A phosphodiesterase 3A 2 2
MIRT451124 ZNF99 zinc finger protein 99 2 2
MIRT452676 GPR156 G protein-coupled receptor 156 2 2
MIRT452888 PSD4 pleckstrin and Sec7 domain containing 4 2 2
MIRT453188 ACSF2 acyl-CoA synthetase family member 2 2 2
MIRT453353 ZNF3 zinc finger protein 3 2 2
MIRT454502 ZFYVE27 zinc finger FYVE-type containing 27 2 2
MIRT454629 FAM83H family with sequence similarity 83 member H 2 2
MIRT455183 AGTRAP angiotensin II receptor associated protein 2 2
MIRT458204 FOXL2 forkhead box L2 2 2
MIRT458723 CES2 carboxylesterase 2 2 2
MIRT458942 SAMD4B sterile alpha motif domain containing 4B 2 2
MIRT460304 FLCN folliculin 2 2
MIRT460989 SYT7 synaptotagmin 7 2 2
MIRT461697 ZNF426 zinc finger protein 426 2 2
MIRT461903 NECAB3 N-terminal EF-hand calcium binding protein 3 2 2
MIRT462193 NDUFS1 NADH:ubiquinone oxidoreductase core subunit S1 2 2
MIRT462290 PPM1H protein phosphatase, Mg2+/Mn2+ dependent 1H 2 2
MIRT463795 XPOT exportin for tRNA 2 2
MIRT464649 UBE2V1 ubiquitin conjugating enzyme E2 V1 2 4
MIRT465911 TMEM189-UBE2V1 TMEM189-UBE2V1 readthrough 2 4
MIRT465992 TMEM189 transmembrane protein 189 2 4
MIRT466302 TIMM22 translocase of inner mitochondrial membrane 22 2 2
MIRT466575 TBC1D2B TBC1 domain family member 2B 2 2
MIRT470558 POU2F1 POU class 2 homeobox 1 2 2
MIRT471333 PERP PERP, TP53 apoptosis effector 2 2
MIRT471659 PALM2 paralemmin 2 2 2
MIRT472363 TSPAN1 tetraspanin 1 2 2
MIRT473468 MCFD2 multiple coagulation factor deficiency 2 2 2
MIRT474702 KIF3A kinesin family member 3A 2 2
MIRT476067 GRIN2A glutamate ionotropic receptor NMDA type subunit 2A 2 2
MIRT476077 GRB2 growth factor receptor bound protein 2 2 2
MIRT476423 GBA2 glucosylceramidase beta 2 2 2
MIRT476463 GATAD2B GATA zinc finger domain containing 2B 2 2
MIRT477877 DYNLL2 dynein light chain LC8-type 2 2 2
MIRT478240 DDX3X DEAD-box helicase 3, X-linked 2 4
MIRT479460 CDK6 cyclin dependent kinase 6 2 2
MIRT481030 BAZ2A bromodomain adjacent to zinc finger domain 2A 2 2
MIRT491496 HLA-DOA major histocompatibility complex, class II, DO alpha 2 2
MIRT497585 SLC23A1 solute carrier family 23 member 1 2 2
MIRT498542 TMEM30B transmembrane protein 30B 2 2
MIRT499263 NBPF11 NBPF member 11 2 2
MIRT504698 ZNF117 zinc finger protein 117 2 2
MIRT511288 KLHL15 kelch like family member 15 2 4
MIRT523121 HSP90B1 heat shock protein 90 beta family member 1 2 4
MIRT529601 H1F0 H1 histone family member 0 2 2
MIRT533481 TRIM71 tripartite motif containing 71 2 2
MIRT535571 NUP37 nucleoporin 37 2 4
MIRT537869 EDA2R ectodysplasin A2 receptor 2 2
MIRT538010 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT552681 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 4
MIRT554986 RAB39B RAB39B, member RAS oncogene family 2 2
MIRT556659 KMT2D lysine methyltransferase 2D 2 4
MIRT557437 GTPBP2 GTP binding protein 2 2 2
MIRT560813 CRTAP cartilage associated protein 2 2
MIRT562115 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT563103 IFRD2 interferon related developmental regulator 2 2 2
MIRT574199 LMNB1 lamin B1 2 2
MIRT623920 FMNL3 formin like 3 2 2
MIRT626551 NMNAT2 nicotinamide nucleotide adenylyltransferase 2 2 2
MIRT645458 ANKS6 ankyrin repeat and sterile alpha motif domain containing 6 2 2
MIRT649082 CACNA1B calcium voltage-gated channel subunit alpha1 B 2 2
MIRT659477 CLDN1 claudin 1 2 2
MIRT667950 HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 2 2
MIRT701981 MIER3 MIER family member 3 2 2
MIRT708694 TFDP2 transcription factor Dp-2 2 2
MIRT709649 DFFB DNA fragmentation factor subunit beta 2 2
MIRT710090 FAM229B family with sequence similarity 229 member B 2 2
MIRT718396 ALDH1A3 aldehyde dehydrogenase 1 family member A3 2 2
MIRT724972 TNS1 tensin 1 2 2
MIRT756050 HRH4 histamine receptor H4 2 1
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3915 Paclitaxel 36314 NSC125973 approved resistant High Prostate Cancer cell line (DU-145, PC-3)
hsa-miR-3915 Cisplatin + Decitabine sensitive High Non-Small Cell Lung Cancer cell line (A549)
hsa-mir-3915 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-miR-3915 Tripterygium wilfordii Hook F sensitive tissue
hsa-miR-3915 Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-3915 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3915 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

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