pre-miRNA Information
pre-miRNA hsa-mir-605   
Genomic Coordinates chr10: 51299573 - 51299655
Synonyms MIRN605, hsa-mir-605, MIR605
Description Homo sapiens miR-605 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-605-3p
Sequence 51| AGAAGGCACUAUGAGAUUUAGA |72
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 4 10 + 51299626 27587585, 28550310, 26028588, 26449202, 26487287, 29165639 MiREDiBase
A-to-I 14 10 + 51299636 29233923 MiREDiBase
A-to-I 20 10 + 51299642 18684997, 26449202, 27587585, 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs759219082 5 dbSNP
rs1491224174 9 dbSNP
rs746611214 10 dbSNP
rs367648737 11 dbSNP
rs1359467239 14 dbSNP
rs1442565019 16 dbSNP
Putative Targets

Gene Information
Gene Symbol RNF157   
Synonyms -
Description ring finger protein 157
Transcript NM_052916   
Expression
Putative miRNA Targets on RNF157
3'UTR of RNF157
(miRNA target sites are highlighted)
>RNF157|NM_052916|3'UTR
   1 GCCCCAGCCTCTGCACTTGGGCTCCCCTCCTGCCCTGCATTCCATCCATCCTCACTCAGCTGCTGCCTACTGGGCATCCT
  81 CAGCAAGATGCTGGAGACTTTTTACCCTCCTGTGACAGCTGTTACAACCTGTAACCACAATCCCTCACCTCTCAGAGGGA
 161 ACTGGAACCCTCCTTTCTCCGTGTGACCTAAAGCCACTCAATGAACTGCAGCTCACGAGACCTTTTGCAGGGACTCTGGA
 241 ATGTCCTCACGGTATATTGATGTTCAGGTGGAGCTGGGGTCCATGGGCTAATTTCTTACACATCTTTTTTCTCCTTAGGG
 321 GGTAGAACAAGAAGGCTTAGAGTTTGGCAGCTTTGTTACAAACATCCCTCTGGCATTTCCTGGTCTCTGGCACATCATAA
 401 CCAATTGGAAACCTGCAGTTTGGGGTAGGGCTGGAGGATCGCTCCTGTGGAAAGGGAGAGCCATACTGCACGGACGTAGC
 481 GTTTCCCTCTACAAGCACTAGGAGCACCTTTCTCAAGGACAAGAAATGGTAGCAACCAAAAGGTTGGTTGAAGGAAACAA
 561 TCCTTCCTTCTGGTGGCAGAGCCAGTCTTCTGGGCCTCACATGCCTGTGCGGTTAAGAAGGAGCTCTTGGCCGGGCGCGG
 641 TGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGATCAGGAGATCGAGACCATCCTGGC
 721 TAACACGGCGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCATGGTTGCAGGCGCCTGTAGTCCCAGCTAC
 801 TTGGGAGGCTGAGGCAGGAGAATGGCCTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCAATGCACTCCA
 881 GCCTGGGCGACAGAGAAAAAAAAAAAAAAAGAAGGAGCCCTTGAATCTGAGAATCCCCCAGTTAAGATGATTTCCCTTAA
 961 GGAGCATTTCTCCTGATCAGGTGCATTCAGGGAGGCCTGCAACTCCATCCTAAGGTGACATTTCAAGAAACACATGTGTT
1041 GACCACCTCTGTGTGCCAAGCACTGGGTGAGGAGTGGTCGTATATTACCATAATTCATCCTCACTCAATTGGGAGGTGGC
1121 ATTCTTGTCCCTGTTGCCCCCATCTCTACCCCCTTTTGTTAATGGTTGAGAGAAATGTGGACCAGTGATTCTCAGTTTGG
1201 TGCCCAGGTCCCCAAAGGAAGTGATGGAGAGCCTTGAGCTAAGTTCAGGCAGCAGCATGTGGCCAGCAGCAGTGTGCTGG
1281 GAGCAGAGGTTGGAATCAGGGCTCAGGGCCTTCACTTCAAGGGCCCTCCCCAGCTACTCGGGAGGCTGAGGCAGGAGAAT
1361 CGCTTGAACTCAGGAGGTGGAGGTTGCGGTGAGCCAAGATCGTGCCACTGCACTCCAGCCTGGGCTACAAGATTGAAAAG
1441 ATCGAAACTCTGTCTCAAACAAAAAAAAAAAAATTCAAGGCTGTTTCCAAGGCAGCCTCAAAAAGAGCCTGGTGCCCAGG
1521 GGGTCCTTCGTTTCTGTGTGGCTGCAGAGGCCAGGAGTGCAGTGACTGTCTCACTGCCTAGTGGTTGTGGCTCACATCCT
1601 GCCCTGATGGAGAGGGGGGCCTGTCGTCCAACCCTCTCTGAAAAACTGCAGTAGACTTTACCATTTCAGGCCCCACCTAA
1681 TGTTCTTTCCTTCCTTCCCCCTACATTCTTCCCGCCCCTTTCATAGTTAAGATGCATAAGCTGAGCAATAACCCCACTTC
1761 CTGATTTCCCTGAAATATGAGCCCAGAAGCAGCAGGTGACAGGGAGCTTCCCTTACCCTGGGGTGGTGGCACACAGACCA
1841 CCTCCTGTCCTGTCCCCTGCAGGTAGTATTCACAGTGTGGTGTTACCTGGGAGGAGGGAGGAAGGAGCTGAGATGAAGGA
1921 GATTCAGGTAAACAGTAGCCACAGTGGCCAGGACCCCCTTCCTGAGGATCCCTGTCCTTCCTCGCAGCAGGTGCTTAGTC
2001 CTCTCCTAGGGAGAAGCACGGAAAGATTCCTCAAGGCCTCAGTCCCATGTCCAAGGCATACCTAGGTTAGAAATGTCCTT
2081 TACTTGTTTCTCAGTTACTATTTCTCCTCTTCCTCCCTCCCCCTGCCTTCTCTTGGCTGTCATTTAGCTCTCTGGCCCAC
2161 AGAAATACTCCATCCAAGGAGCTGGTCCTCAGTCAGCCTGATGAGGACAGGTCAGTGGCCAACCCTTTTGCCCCAGTCCT
2241 TCATCTGGAGACAGTCACATAGTCACGTCAACAGTTCACCCAAAGAGAAGAGGTGGGGCCTGGCTTCTCCCACAGGGCAC
2321 AGCCTAACTATGGAGACCCAGGGCTCCTTCCTGCTGCACTAGGCCTGTGCTCTCCCTATTGCCTTCAGGTGGTGTGATCC
2401 CGGCTTCCTCACAGAGCCCTTTTTTCCTTCTGCCCAGCTCCATCCCACCAGAGTTTCTACCCCCGCTGAGGCATCTCCTG
2481 GGCACAGACCACCACACTCTAAGCCGGCTGGCCTGGGAGTTAGGGTCCTGCCCACCTCACCTGGGAGTTGGGGTCCTGCC
2561 CACCTGGAGTTTAGCACGCTGGTCGCTCACTTTGCTTTGGTCTGCACACCTGGTGTGTGCATGTGTATACTGCTTGTGCC
2641 ATCTGTGTACCCCTCTCCCTGGAGTACACTTGTGGTCACACTACAGTGGGGACATCAAGAATGCAATATTTATGGATTGC
2721 TGCATGATTCTTAAAAATGAATAAAACTGTTTACAAGGGAAGGAGAGCTAACTGCAAAGTGAAAAAAAAAAAAAAAAAAA
2801 AAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' agauuuAGA-GUAUCACGGAAGa 5'
                ||| | || ||||||| 
Target 5' ctgtgcTCTCCCTATTGCCTTCa 3'
2365 - 2387 156.00 -12.00
2
miRNA  3' agauuuaGAGUAUCACGGAAGa 5'
                 |||    ||||||| 
Target 5' ttcctccCTCCCCCTGCCTTCt 3'
2110 - 2131 143.00 -12.50
3
miRNA  3' agaUUUAGAGUAUCACGGAAGa 5'
             |:: |||  || |||||| 
Target 5' atcAGGGCTC--AGGGCCTTCa 3'
1295 - 1314 127.00 -13.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30451960 43 COSMIC
COSN31544943 60 COSMIC
COSN31481890 112 COSMIC
COSN17037400 445 COSMIC
COSN5801362 464 COSMIC
COSN6112167 542 COSMIC
COSN17119757 561 COSMIC
COSN9674011 608 COSMIC
COSN16181622 753 COSMIC
COSN22359754 842 COSMIC
COSN1729072 996 COSMIC
COSN22431790 1333 COSMIC
COSN6415768 1447 COSMIC
COSN27214130 1460 COSMIC
COSN29990093 1461 COSMIC
COSN1729070 1926 COSMIC
COSN1729068 1931 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1463689417 2 dbSNP
rs569698837 3 dbSNP
rs1323489285 4 dbSNP
rs1369719815 5 dbSNP
rs549885834 7 dbSNP
rs1445083847 9 dbSNP
rs1386996710 13 dbSNP
rs529791313 14 dbSNP
rs944102867 24 dbSNP
rs747071000 27 dbSNP
rs1250566540 28 dbSNP
rs1284079448 30 dbSNP
rs374546733 33 dbSNP
rs1481835212 37 dbSNP
rs1273469799 38 dbSNP
rs1204886260 43 dbSNP
rs772243431 45 dbSNP
rs889872128 46 dbSNP
rs561133498 47 dbSNP
rs935666595 48 dbSNP
rs779347131 49 dbSNP
rs1251386587 71 dbSNP
rs1352843656 71 dbSNP
rs978731417 91 dbSNP
rs1179371357 93 dbSNP
rs967020752 94 dbSNP
rs58115413 95 dbSNP
rs1157911776 106 dbSNP
rs1340816624 110 dbSNP
rs1311827950 114 dbSNP
rs139649300 118 dbSNP
rs945638110 125 dbSNP
rs1298228372 129 dbSNP
rs111436096 131 dbSNP
rs544922835 133 dbSNP
rs1330366181 135 dbSNP
rs1157307547 147 dbSNP
rs576803813 149 dbSNP
rs959775960 153 dbSNP
rs1357599248 157 dbSNP
rs1034138528 166 dbSNP
rs1271614942 171 dbSNP
rs1334488217 176 dbSNP
rs1369396032 180 dbSNP
rs1187699794 181 dbSNP
rs1474311623 195 dbSNP
rs1265654982 197 dbSNP
rs1217370477 201 dbSNP
rs1476125028 204 dbSNP
rs952121049 205 dbSNP
rs563383791 208 dbSNP
rs1163754574 212 dbSNP
rs1416870782 215 dbSNP
rs1169280578 216 dbSNP
rs1487993630 217 dbSNP
rs979920362 218 dbSNP
rs1026351603 225 dbSNP
rs1356692490 237 dbSNP
rs1282301609 246 dbSNP
rs763738132 248 dbSNP
rs117169554 250 dbSNP
rs574793693 251 dbSNP
rs1272145724 253 dbSNP
rs1018751943 254 dbSNP
rs555054524 257 dbSNP
rs1279390142 266 dbSNP
rs1486641279 269 dbSNP
rs753081224 271 dbSNP
rs765545000 273 dbSNP
rs888839863 274 dbSNP
rs749976993 275 dbSNP
rs1278410168 278 dbSNP
rs1019573864 281 dbSNP
rs1054193203 282 dbSNP
rs1371006804 301 dbSNP
rs1324168017 302 dbSNP
rs1325017194 319 dbSNP
rs1376715343 320 dbSNP
rs534874832 321 dbSNP
rs1008685980 322 dbSNP
rs34766219 323 dbSNP
rs1419320438 324 dbSNP
rs889868438 327 dbSNP
rs935759846 328 dbSNP
rs902840424 340 dbSNP
rs760001054 342 dbSNP
rs1298139256 347 dbSNP
rs1164612550 361 dbSNP
rs1324949600 364 dbSNP
rs1226943161 370 dbSNP
rs1460227305 379 dbSNP
rs1049829384 383 dbSNP
rs936823423 384 dbSNP
rs777182089 388 dbSNP
rs945579475 389 dbSNP
rs1475249412 393 dbSNP
rs1259359523 401 dbSNP
rs1446115918 402 dbSNP
rs918192140 405 dbSNP
rs1396426432 409 dbSNP
rs150762833 425 dbSNP
rs1395047371 428 dbSNP
rs115627588 441 dbSNP
rs1291053863 446 dbSNP
rs1383248763 454 dbSNP
rs926815566 465 dbSNP
rs1179055771 466 dbSNP
rs1326834000 467 dbSNP
rs77315634 471 dbSNP
rs371557949 472 dbSNP
rs1211789534 473 dbSNP
rs1302712636 475 dbSNP
rs952198853 481 dbSNP
rs979827045 487 dbSNP
rs1258799708 491 dbSNP
rs1349672224 495 dbSNP
rs1258544386 496 dbSNP
rs1217618568 497 dbSNP
rs1254505365 498 dbSNP
rs1466831424 500 dbSNP
rs1337054042 507 dbSNP
rs1026701068 515 dbSNP
rs1276042009 518 dbSNP
rs1238233408 520 dbSNP
rs1420269876 527 dbSNP
rs952455711 543 dbSNP
rs1362498447 549 dbSNP
rs1026786576 550 dbSNP
rs757230373 551 dbSNP
rs373197051 562 dbSNP
rs141371505 567 dbSNP
rs1396998323 574 dbSNP
rs1438939754 578 dbSNP
rs961317172 582 dbSNP
rs533374424 583 dbSNP
rs966332969 586 dbSNP
rs760814766 588 dbSNP
rs1335035486 601 dbSNP
rs1402907381 606 dbSNP
rs1171906134 609 dbSNP
rs1409547712 610 dbSNP
rs369390338 611 dbSNP
rs1008214230 622 dbSNP
rs889806961 624 dbSNP
rs1028298737 629 dbSNP
rs1007510794 632 dbSNP
rs148260771 633 dbSNP
rs12452812 635 dbSNP
rs527465637 636 dbSNP
rs1000318899 637 dbSNP
rs571135174 638 dbSNP
rs1041752698 639 dbSNP
rs1191663862 646 dbSNP
rs949760106 648 dbSNP
rs551244445 649 dbSNP
rs1056621756 651 dbSNP
rs938303934 658 dbSNP
rs185860408 659 dbSNP
rs896725885 660 dbSNP
rs984934925 669 dbSNP
rs1294966865 671 dbSNP
rs780039427 672 dbSNP
rs1232383448 674 dbSNP
rs919369159 676 dbSNP
rs972447068 677 dbSNP
rs1232729126 681 dbSNP
rs966060088 682 dbSNP
rs1212208432 685 dbSNP
rs181322017 687 dbSNP
rs1205741124 688 dbSNP
rs1483979264 692 dbSNP
rs1420519289 696 dbSNP
rs1430479231 700 dbSNP
rs986043471 701 dbSNP
rs1168489754 703 dbSNP
rs1354001103 706 dbSNP
rs567772663 707 dbSNP
rs190859001 710 dbSNP
rs186050253 715 dbSNP
rs531073878 721 dbSNP
rs1231549257 722 dbSNP
rs1000050774 726 dbSNP
rs1289192308 727 dbSNP
rs967502537 729 dbSNP
rs1412277693 730 dbSNP
rs1349158551 735 dbSNP
rs1020017864 737 dbSNP
rs1014442979 738 dbSNP
rs1283100588 743 dbSNP
rs895481346 745 dbSNP
rs1425037485 761 dbSNP
rs1484947461 769 dbSNP
rs1209891381 777 dbSNP
rs1404633161 782 dbSNP
rs1170984434 783 dbSNP
rs1055418872 785 dbSNP
rs1002378995 788 dbSNP
rs905457994 789 dbSNP
rs1184999128 794 dbSNP
rs1389714173 796 dbSNP
rs1234114618 803 dbSNP
rs1175544603 806 dbSNP
rs1393229649 817 dbSNP
rs1049672947 818 dbSNP
rs930841954 827 dbSNP
rs1182607475 833 dbSNP
rs562810049 834 dbSNP
rs182259507 835 dbSNP
rs1287927043 839 dbSNP
rs1180473791 841 dbSNP
rs1371197448 842 dbSNP
rs1442434581 846 dbSNP
rs1300572641 848 dbSNP
rs1280334200 850 dbSNP
rs919714028 852 dbSNP
rs143901148 853 dbSNP
rs972585669 856 dbSNP
rs865994197 858 dbSNP
rs944811886 859 dbSNP
rs1269225313 865 dbSNP
rs572663246 866 dbSNP
rs1477689285 867 dbSNP
rs1327703952 871 dbSNP
rs75625050 875 dbSNP
rs961531883 878 dbSNP
rs1158077036 883 dbSNP
rs1342306315 884 dbSNP
rs1394800109 886 dbSNP
rs1332242946 888 dbSNP
rs1452256100 889 dbSNP
rs11653252 890 dbSNP
rs1389644695 891 dbSNP
rs1159717988 893 dbSNP
rs1012661311 895 dbSNP
rs59610541 896 dbSNP
rs986133288 896 dbSNP
rs1491138217 897 dbSNP
rs559233347 897 dbSNP
rs1335791144 898 dbSNP
rs1215773120 908 dbSNP
rs1271421142 909 dbSNP
rs1182543709 911 dbSNP
rs1234548158 911 dbSNP
rs1324079459 911 dbSNP
rs1451115044 911 dbSNP
rs200215015 911 dbSNP
rs537206784 911 dbSNP
rs1476023355 912 dbSNP
rs1162359297 913 dbSNP
rs1389498241 914 dbSNP
rs529521731 914 dbSNP
rs796991170 915 dbSNP
rs1028243366 916 dbSNP
rs545711489 923 dbSNP
rs1000822288 929 dbSNP
rs1021489554 935 dbSNP
rs968100387 935 dbSNP
rs576760278 939 dbSNP
rs189452055 942 dbSNP
rs73996148 943 dbSNP
rs1355846727 947 dbSNP
rs1056649825 959 dbSNP
rs1275164799 965 dbSNP
rs1002425445 970 dbSNP
rs1204347916 971 dbSNP
rs1258062167 972 dbSNP
rs1486539386 975 dbSNP
rs1185474251 979 dbSNP
rs1367564035 991 dbSNP
rs979114296 996 dbSNP
rs1169195752 997 dbSNP
rs967217270 1002 dbSNP
rs905447359 1026 dbSNP
rs1341206782 1031 dbSNP
rs1428455073 1035 dbSNP
rs1020575176 1036 dbSNP
rs1288428399 1036 dbSNP
rs1376532522 1041 dbSNP
rs1044082316 1043 dbSNP
rs1332557848 1050 dbSNP
rs1451470724 1079 dbSNP
rs566939265 1080 dbSNP
rs1165172516 1082 dbSNP
rs959787729 1090 dbSNP
rs1460705499 1096 dbSNP
rs1486590872 1099 dbSNP
rs1208513608 1100 dbSNP
rs1255190949 1106 dbSNP
rs781294436 1108 dbSNP
rs553563718 1119 dbSNP
rs1447280049 1122 dbSNP
rs1001176872 1129 dbSNP
rs1195386696 1133 dbSNP
rs1477974533 1136 dbSNP
rs137950728 1140 dbSNP
rs939803666 1142 dbSNP
rs1049306046 1144 dbSNP
rs1485154933 1151 dbSNP
rs1248987945 1158 dbSNP
rs986659322 1170 dbSNP
rs995520959 1180 dbSNP
rs1401922679 1187 dbSNP
rs1383066073 1200 dbSNP
rs1334581749 1220 dbSNP
rs1271738855 1221 dbSNP
rs1220681802 1228 dbSNP
rs571109160 1231 dbSNP
rs547290013 1245 dbSNP
rs1350025760 1251 dbSNP
rs551115068 1253 dbSNP
rs1230960971 1263 dbSNP
rs1331425568 1263 dbSNP
rs531412404 1264 dbSNP
rs1036971870 1277 dbSNP
rs1380639187 1278 dbSNP
rs1206612814 1281 dbSNP
rs1265877949 1289 dbSNP
rs1464127019 1300 dbSNP
rs1369877312 1315 dbSNP
rs968048661 1320 dbSNP
rs568778007 1328 dbSNP
rs944733262 1336 dbSNP
rs1020974792 1337 dbSNP
rs1197362329 1339 dbSNP
rs549284409 1340 dbSNP
rs1391992670 1344 dbSNP
rs911998461 1351 dbSNP
rs1160617477 1359 dbSNP
rs1050388441 1361 dbSNP
rs931956342 1362 dbSNP
rs1326735042 1372 dbSNP
rs1373284508 1375 dbSNP
rs1385088048 1377 dbSNP
rs1465757521 1381 dbSNP
rs960832929 1387 dbSNP
rs1167641444 1388 dbSNP
rs1035562189 1389 dbSNP
rs1240949353 1401 dbSNP
rs925968379 1402 dbSNP
rs1425312566 1412 dbSNP
rs978697365 1418 dbSNP
rs1487228019 1423 dbSNP
rs1194801253 1427 dbSNP
rs1208678058 1429 dbSNP
rs1002412503 1430 dbSNP
rs1468471649 1434 dbSNP
rs1184489833 1437 dbSNP
rs905437583 1440 dbSNP
rs867286720 1443 dbSNP
rs945986382 1444 dbSNP
rs1165934539 1449 dbSNP
rs1027938424 1451 dbSNP
rs1396887337 1452 dbSNP
rs1456474529 1452 dbSNP
rs530023846 1454 dbSNP
rs1481060901 1456 dbSNP
rs1250995151 1457 dbSNP
rs1057182011 1460 dbSNP
rs913028351 1462 dbSNP
rs993074928 1463 dbSNP
rs561371089 1464 dbSNP
rs898130569 1464 dbSNP
rs1294772482 1465 dbSNP
rs1319511455 1470 dbSNP
rs1034077116 1473 dbSNP
rs1243484175 1474 dbSNP
rs1251360905 1474 dbSNP
rs765184655 1474 dbSNP
rs533432452 1480 dbSNP
rs868290280 1481 dbSNP
rs1189031454 1482 dbSNP
rs1416265637 1487 dbSNP
rs1422250148 1495 dbSNP
rs1304328796 1501 dbSNP
rs1164225781 1505 dbSNP
rs952364375 1515 dbSNP
rs1373704496 1521 dbSNP
rs939731827 1525 dbSNP
rs1027107074 1529 dbSNP
rs541158704 1530 dbSNP
rs1368700151 1534 dbSNP
rs1369823482 1541 dbSNP
rs1051366362 1549 dbSNP
rs1314455581 1551 dbSNP
rs1376581305 1552 dbSNP
rs1391781627 1553 dbSNP
rs898079906 1554 dbSNP
rs932518780 1557 dbSNP
rs1015068719 1572 dbSNP
rs1009082781 1574 dbSNP
rs781182106 1576 dbSNP
rs757072801 1581 dbSNP
rs1395150301 1582 dbSNP
rs1225475599 1584 dbSNP
rs1273129393 1592 dbSNP
rs1050481010 1594 dbSNP
rs932092126 1595 dbSNP
rs751091973 1598 dbSNP
rs1482432784 1601 dbSNP
rs921165492 1613 dbSNP
rs527831830 1614 dbSNP
rs1451423489 1615 dbSNP
rs979296464 1619 dbSNP
rs1389524743 1620 dbSNP
rs1454171323 1620 dbSNP
rs2598427 1622 dbSNP
rs545574914 1625 dbSNP
rs1446937812 1626 dbSNP
rs945944489 1630 dbSNP
rs913160864 1631 dbSNP
rs1420014320 1650 dbSNP
rs1432297599 1651 dbSNP
rs992594700 1656 dbSNP
rs758076883 1657 dbSNP
rs1296182897 1659 dbSNP
rs1194281608 1660 dbSNP
rs1484366057 1662 dbSNP
rs1281250067 1669 dbSNP
rs752314903 1671 dbSNP
rs927154152 1674 dbSNP
rs1466399294 1676 dbSNP
rs979820033 1681 dbSNP
rs1210295825 1684 dbSNP
rs961073797 1688 dbSNP
rs73345576 1690 dbSNP
rs1192858650 1694 dbSNP
rs1156249437 1697 dbSNP
rs1422908169 1702 dbSNP
rs980923853 1703 dbSNP
rs1311339964 1712 dbSNP
rs969569698 1713 dbSNP
rs75633162 1714 dbSNP
rs1455293092 1715 dbSNP
rs1319366893 1723 dbSNP
rs972813434 1725 dbSNP
rs995057666 1736 dbSNP
rs78399909 1748 dbSNP
rs962292183 1750 dbSNP
rs1277131485 1766 dbSNP
rs1397359921 1770 dbSNP
rs200741033 1774 dbSNP
rs1219052739 1775 dbSNP
rs1308133158 1782 dbSNP
rs1469159695 1788 dbSNP
rs1015577647 1797 dbSNP
rs1015634794 1801 dbSNP
rs573539878 1806 dbSNP
rs1468978816 1817 dbSNP
rs1223803762 1822 dbSNP
rs1311704678 1823 dbSNP
rs1477637571 1852 dbSNP
rs1177616894 1856 dbSNP
rs1413880262 1857 dbSNP
rs1471441990 1865 dbSNP
rs1157965884 1866 dbSNP
rs1394691070 1869 dbSNP
rs553769987 1871 dbSNP
rs1432357138 1872 dbSNP
rs1361962407 1875 dbSNP
rs1406622269 1882 dbSNP
rs890861471 1883 dbSNP
rs890623447 1886 dbSNP
rs764585127 1889 dbSNP
rs1436373248 1893 dbSNP
rs1309091382 1896 dbSNP
rs1352723868 1898 dbSNP
rs755366496 1907 dbSNP
rs1363522637 1923 dbSNP
rs1180110430 1933 dbSNP
rs899648371 1939 dbSNP
rs1335675256 1946 dbSNP
rs533548332 1949 dbSNP
rs904606243 1955 dbSNP
rs1043040814 1961 dbSNP
rs946054901 1962 dbSNP
rs891825631 1963 dbSNP
rs577279119 1964 dbSNP
rs114881520 1968 dbSNP
rs1418160100 1974 dbSNP
rs927122855 1983 dbSNP
rs537625434 1984 dbSNP
rs1412438578 1987 dbSNP
rs569064382 1988 dbSNP
rs548994084 1990 dbSNP
rs1409974651 1991 dbSNP
rs1309189550 2001 dbSNP
rs931039344 2004 dbSNP
rs140269268 2005 dbSNP
rs1408422043 2007 dbSNP
rs1307778411 2008 dbSNP
rs972538184 2011 dbSNP
rs567548092 2015 dbSNP
rs1282563010 2018 dbSNP
rs912270152 2019 dbSNP
rs987713610 2020 dbSNP
rs1292274721 2025 dbSNP
rs1276715992 2029 dbSNP
rs1412591379 2032 dbSNP
rs1027789463 2034 dbSNP
rs954948058 2047 dbSNP
rs1257952817 2048 dbSNP
rs767569280 2048 dbSNP
rs1443855099 2051 dbSNP
rs1465960 2052 dbSNP
rs184253399 2053 dbSNP
rs1015210681 2054 dbSNP
rs116831271 2056 dbSNP
rs1392616804 2067 dbSNP
rs1428354678 2070 dbSNP
rs1168410292 2074 dbSNP
rs955090289 2080 dbSNP
rs1416450811 2082 dbSNP
rs1332452980 2086 dbSNP
rs1340044133 2090 dbSNP
rs968805668 2098 dbSNP
rs1435943839 2104 dbSNP
rs1363017083 2107 dbSNP
rs1384909220 2107 dbSNP
rs1029298474 2110 dbSNP
rs73345573 2116 dbSNP
rs1463323637 2117 dbSNP
rs774551940 2122 dbSNP
rs1198469249 2125 dbSNP
rs1277519908 2129 dbSNP
rs1447187494 2135 dbSNP
rs1190000089 2140 dbSNP
rs1245648601 2142 dbSNP
rs1419081179 2151 dbSNP
rs1164474783 2154 dbSNP
rs899595789 2165 dbSNP
rs181687688 2175 dbSNP
rs1010776524 2188 dbSNP
rs563130680 2190 dbSNP
rs891790833 2193 dbSNP
rs1193999247 2197 dbSNP
rs1446318116 2199 dbSNP
rs1322723958 2205 dbSNP
rs188496463 2208 dbSNP
rs892366213 2209 dbSNP
rs1434393450 2213 dbSNP
rs1052388327 2222 dbSNP
rs1057095282 2223 dbSNP
rs1002712683 2224 dbSNP
rs939284976 2226 dbSNP
rs1214099499 2232 dbSNP
rs905790788 2233 dbSNP
rs1044185655 2250 dbSNP
rs562211756 2252 dbSNP
rs1335206548 2253 dbSNP
rs948077726 2260 dbSNP
rs1213720065 2262 dbSNP
rs1272376930 2266 dbSNP
rs920714237 2267 dbSNP
rs919793074 2274 dbSNP
rs1231010036 2276 dbSNP
rs1037185514 2277 dbSNP
rs973972421 2280 dbSNP
rs1161669698 2288 dbSNP
rs1456810444 2292 dbSNP
rs369073980 2295 dbSNP
rs62090126 2298 dbSNP
rs1324221676 2304 dbSNP
rs1350884915 2309 dbSNP
rs577241654 2311 dbSNP
rs1229938105 2320 dbSNP
rs986465076 2323 dbSNP
rs1443839676 2329 dbSNP
rs1327999526 2330 dbSNP
rs192712006 2331 dbSNP
rs1244931977 2332 dbSNP
rs1395655640 2333 dbSNP
rs187754959 2338 dbSNP
rs1208584314 2339 dbSNP
rs922194391 2343 dbSNP
rs1029246003 2344 dbSNP
rs1184737364 2345 dbSNP
rs374864217 2346 dbSNP
rs1249944165 2351 dbSNP
rs975053930 2368 dbSNP
rs1472376731 2370 dbSNP
rs969274529 2375 dbSNP
rs769540410 2378 dbSNP
rs1162600470 2386 dbSNP
rs1168522248 2389 dbSNP
rs537586352 2401 dbSNP
rs956133928 2402 dbSNP
rs745676455 2403 dbSNP
rs1305917963 2414 dbSNP
rs1349547422 2418 dbSNP
rs1396236449 2419 dbSNP
rs1371452285 2424 dbSNP
rs1319418544 2426 dbSNP
rs1035615220 2444 dbSNP
rs1291731975 2447 dbSNP
rs1002848635 2448 dbSNP
rs905901198 2449 dbSNP
rs1044272092 2450 dbSNP
rs1250052120 2454 dbSNP
rs138902853 2458 dbSNP
rs1480469835 2461 dbSNP
rs892277005 2464 dbSNP
rs1183018610 2465 dbSNP
rs995474663 2465 dbSNP
rs1468867252 2466 dbSNP
rs898313840 2472 dbSNP
rs1166545129 2478 dbSNP
rs117348350 2481 dbSNP
rs535292919 2489 dbSNP
rs1466309962 2490 dbSNP
rs939723844 2499 dbSNP
rs763938262 2501 dbSNP
rs948069490 2503 dbSNP
rs890896916 2505 dbSNP
rs1458779696 2506 dbSNP
rs1297672442 2507 dbSNP
rs867023134 2511 dbSNP
rs932293653 2512 dbSNP
rs1336874721 2521 dbSNP
rs566717213 2524 dbSNP
rs1258015037 2527 dbSNP
rs150232473 2531 dbSNP
rs908003039 2533 dbSNP
rs1248707983 2540 dbSNP
rs534152363 2541 dbSNP
rs1186611272 2543 dbSNP
rs1418643703 2550 dbSNP
rs947699472 2552 dbSNP
rs914691478 2553 dbSNP
rs1325602890 2558 dbSNP
rs988997202 2565 dbSNP
rs1439194026 2566 dbSNP
rs956101399 2568 dbSNP
rs141101268 2577 dbSNP
rs981514514 2578 dbSNP
rs963706028 2584 dbSNP
rs184405647 2585 dbSNP
rs1394347272 2586 dbSNP
rs1175600191 2595 dbSNP
rs1454627943 2600 dbSNP
rs1303830659 2607 dbSNP
rs1394424662 2610 dbSNP
rs1191719322 2613 dbSNP
rs1203267150 2629 dbSNP
rs12453957 2637 dbSNP
rs1268928519 2638 dbSNP
rs879824562 2647 dbSNP
rs1471020900 2649 dbSNP
rs1466327632 2656 dbSNP
rs777304969 2660 dbSNP
rs1233308696 2662 dbSNP
rs1488755049 2667 dbSNP
rs989217435 2670 dbSNP
rs1203359013 2673 dbSNP
rs1422798058 2677 dbSNP
rs1479952417 2677 dbSNP
rs1159457778 2680 dbSNP
rs956666633 2683 dbSNP
rs1435730307 2684 dbSNP
rs1030793219 2692 dbSNP
rs1023000074 2704 dbSNP
rs1003823237 2705 dbSNP
rs1345167472 2711 dbSNP
rs906438203 2714 dbSNP
rs1295723548 2722 dbSNP
rs1365934698 2739 dbSNP
rs1023586252 2750 dbSNP
rs1349171318 2752 dbSNP
rs995793725 2758 dbSNP
rs546099901 2761 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000269391.6 | 3UTR | CUCUUCCUCCCUCCCCCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
100 hsa-miR-605-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT061339 WEE1 WEE1 G2 checkpoint kinase 2 4
MIRT061584 BTG2 BTG anti-proliferation factor 2 2 6
MIRT076140 WDR81 WD repeat domain 81 2 2
MIRT079361 CCDC137 coiled-coil domain containing 137 2 2
MIRT079547 VAMP3 vesicle associated membrane protein 3 2 2
MIRT096242 CANX calnexin 2 2
MIRT243877 G3BP1 G3BP stress granule assembly factor 1 2 4
MIRT249186 AKIRIN1 akirin 1 2 8
MIRT273604 SP1 Sp1 transcription factor 2 2
MIRT316766 FOXC1 forkhead box C1 2 4
MIRT322410 PPP2R2A protein phosphatase 2 regulatory subunit Balpha 2 2
MIRT370117 TRIB3 tribbles pseudokinase 3 2 2
MIRT392725 UBN2 ubinuclein 2 2 2
MIRT406910 PTBP1 polypyrimidine tract binding protein 1 2 2
MIRT407440 CTDSP1 CTD small phosphatase 1 2 2
MIRT441887 RD3 retinal degeneration 3 2 4
MIRT444979 C15orf52 chromosome 15 open reading frame 52 2 2
MIRT445241 FOXD4 forkhead box D4 2 2
MIRT445500 FOXD4L5 forkhead box D4 like 5 2 2
MIRT445503 FOXD4L4 forkhead box D4 like 4 2 2
MIRT447025 FOXD4L1 forkhead box D4 like 1 2 2
MIRT447743 TMCC3 transmembrane and coiled-coil domain family 3 2 2
MIRT448761 HDX highly divergent homeobox 2 2
MIRT450003 HAX1 HCLS1 associated protein X-1 2 2
MIRT452830 FAM131B family with sequence similarity 131 member B 2 2
MIRT452872 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT453506 ARRB1 arrestin beta 1 2 2
MIRT454169 HIST1H2BK histone cluster 1 H2B family member k 2 2
MIRT458742 CES2 carboxylesterase 2 2 2
MIRT459166 HSPA6 heat shock protein family A (Hsp70) member 6 2 21
MIRT460246 IL17RB interleukin 17 receptor B 2 4
MIRT460514 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT460698 RNF157 ring finger protein 157 2 2
MIRT461481 METTL1 methyltransferase like 1 2 2
MIRT462617 C20orf27 chromosome 20 open reading frame 27 2 4
MIRT463233 ZNF131 zinc finger protein 131 2 2
MIRT465699 TNPO2 transportin 2 2 8
MIRT466304 TIMM22 translocase of inner mitochondrial membrane 22 2 2
MIRT468957 RPS14 ribosomal protein S14 2 6
MIRT469571 RARA retinoic acid receptor alpha 2 2
MIRT469685 RAB5B RAB5B, member RAS oncogene family 2 2
MIRT470800 PMP22 peripheral myelin protein 22 2 2
MIRT471649 PANK2 pantothenate kinase 2 2 4
MIRT471722 OTUB1 OTU deubiquitinase, ubiquitin aldehyde binding 1 2 2
MIRT472281 NFIB nuclear factor I B 2 4
MIRT473680 MAPKBP1 mitogen-activated protein kinase binding protein 1 2 2
MIRT475859 H6PD hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase 2 2
MIRT477326 EPHA2 EPH receptor A2 2 2
MIRT477831 DYRK3 dual specificity tyrosine phosphorylation regulated kinase 3 2 2
MIRT478572 CTNND1 catenin delta 1 2 4
MIRT479634 CD81 CD81 molecule 2 2
MIRT481950 ANKRD11 ankyrin repeat domain 11 2 2
MIRT483696 ZNF74 zinc finger protein 74 2 6
MIRT488798 MALT1 MALT1 paracaspase 2 2
MIRT489066 STARD3 StAR related lipid transfer domain containing 3 2 2
MIRT492533 PSMD11 proteasome 26S subunit, non-ATPase 11 2 2
MIRT492857 NRARP NOTCH regulated ankyrin repeat protein 2 2
MIRT496793 BTRC beta-transducin repeat containing E3 ubiquitin protein ligase 2 2
MIRT500122 ZNF106 zinc finger protein 106 2 4
MIRT505359 TMEM167A transmembrane protein 167A 2 2
MIRT506786 KLHL15 kelch like family member 15 2 6
MIRT510692 SRM spermidine synthase 2 6
MIRT515841 CEP104 centrosomal protein 104 2 4
MIRT516448 ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 motif 4 2 4
MIRT528855 PKP1 plakophilin 1 2 2
MIRT533848 TET3 tet methylcytosine dioxygenase 3 2 2
MIRT539025 ATXN7L1 ataxin 7 like 1 2 4
MIRT542872 NR6A1 nuclear receptor subfamily 6 group A member 1 2 2
MIRT546543 SATB2 SATB homeobox 2 2 2
MIRT554114 SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 2 2
MIRT560569 ZNF460 zinc finger protein 460 2 2
MIRT560796 EPM2AIP1 EPM2A interacting protein 1 2 2
MIRT562836 GCFC2 GC-rich sequence DNA-binding factor 2 2 2
MIRT563109 IFRD2 interferon related developmental regulator 2 2 2
MIRT564177 MRPL49 mitochondrial ribosomal protein L49 2 2
MIRT564283 ASB1 ankyrin repeat and SOCS box containing 1 2 2
MIRT564350 USP22 ubiquitin specific peptidase 22 2 2
MIRT565279 TNFRSF21 TNF receptor superfamily member 21 2 2
MIRT565338 TMEM104 transmembrane protein 104 2 2
MIRT565905 SCAMP2 secretory carrier membrane protein 2 2 2
MIRT567108 ITGB1 integrin subunit beta 1 2 2
MIRT567601 FANCF Fanconi anemia complementation group F 2 2
MIRT567779 DGAT2 diacylglycerol O-acyltransferase 2 2 2
MIRT568075 CENPQ centromere protein Q 2 2
MIRT624304 COL12A1 collagen type XII alpha 1 chain 2 2
MIRT644395 CDKL1 cyclin dependent kinase like 1 2 2
MIRT661547 ZNF674 zinc finger protein 674 2 4
MIRT670949 IRAK3 interleukin 1 receptor associated kinase 3 2 2
MIRT672951 AKAP5 A-kinase anchoring protein 5 2 2
MIRT697426 ZFP36 ZFP36 ring finger protein 2 2
MIRT700793 PIAS2 protein inhibitor of activated STAT 2 2 2
MIRT702657 ITGA3 integrin subunit alpha 3 2 2
MIRT708945 FZR1 fizzy and cell division cycle 20 related 1 2 2
MIRT713657 PLCE1 phospholipase C epsilon 1 2 2
MIRT719239 CYSLTR2 cysteinyl leukotriene receptor 2 2 2
MIRT719951 BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 2 2
MIRT722048 HLA-E major histocompatibility complex, class I, E 2 2
MIRT722201 URM1 ubiquitin related modifier 1 2 2
MIRT724790 C1D C1D nuclear receptor corepressor 2 2
MIRT734347 CYP2B6 cytochrome P450 family 2 subfamily B member 6 3 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-605 Anthranilamide-pyrazolo[1,5-a]pyrimidine NULL NULL Quantitative real-time PCR neuroblastoma cells 23992861 2013 up-regualted
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-605 Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-mir-605 Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-mir-605 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-mir-605 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-605-3p Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)

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