miRTarBase - #MIRT461710


—
pre-miRNA Information
pre-miRNA hsa-mir-4786   
Genomic Coordinates chr2: 239943015 - 239943094
Description Homo sapiens miR-4786 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4786-3p
Sequence 51| UGAAGCCAGCUCUGGUCUGGGC |72
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs765116255 2 dbSNP
rs982109365 6 dbSNP
rs949249229 7 dbSNP
rs759383793 8 dbSNP
rs990649205 9 dbSNP
rs1389629709 14 dbSNP
rs975346189 18 dbSNP
rs188625223 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ZNF426   
Synonyms K-RBP
Description zinc finger protein 426
Transcript NM_024106   
Expression
Putative miRNA Targets on ZNF426
3'UTR of ZNF426
(miRNA target sites are highlighted)		 
>ZNF426|NM_024106|3'UTR
   1 TGAGAAACTGTCCATGTAATAAATGTGGGAAAGCTCTCATTTGTTCCAGTTCACTTTAAAGACATGAATGAACTCACTCT
  81 GGAGAGAAGAAGCTGCATGAAAATTACTTAATTCCTGTAATCCCAGCATTTTGAGAGGCTGAGGTGGGTGGATCACTTGA
 161 GGTCAGGAGTTTGAGACCACCCTGGCCAACATGGTGAAACCTTGTCTCTACTGAAAATACAAAAAATTTAGCCAGGTGTG
 241 GTGGGCACCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAAGTGAATCACTTGAACCCAGGAAGCAGAGGTTGCAGTGAG
 321 CAGAGATCATGCCACTGCACTCCAGCCTGGGCGATGGAGTGAGACTCCATCTCAAAAAAAAAAAAAAAAGAAAATTATTT
 401 GATTAAATTGAGTCTGTTAGAGTACATCCCTAATCCAATATGATTGGTGTCCCTATAAGAAGAGAAAGACACAACTGAGA
 481 CAACAAATAGAAGATGATGTGAAGTCATCAGATGATGGCCATCTGCAAGCCAAAGACAGAGCACTGGGACAGATCCTTCT
 561 ATCAAAGCCACCAACCCTGCTGGCACCTTCATCTTGGGCTTCCAGAACTTTGAACAAATAAAATTCTCTTGTTTGAGCCA
 641 CCCAGTCTGTGGTATTTTGTTGTGGTGGCTCTAGCAAGTGAATACAGTAAGCAATAAGCAAAAACGTTTATAGATTGTCC
 721 AAAAGCCTTAATATTCACATGCAAAGCCACACTGGAGAGAAACTATATGAATGTAAGACGTGGGAGAGCCTTCATTGAGT
 801 CTTCAGTCCTTTCTACATACAGGAGAAATCACATAGGAGAGAAATTGTATGAATGTAAGGAGCATGAAAAAGCCTGTGAA
 881 TGTTCACTATATTTTAATATTCACATGCAAGTTGTCTGGTCGTAGACCATGTGAAAATAGAGGAGAAAAAAGGAAAGAAA
 961 GTTTCTTTTACTGTGAACGCAAGGAATGTGACCCCATACACCATACTGGAACTTGGAGTGGACTGAAATCCCATTAGGAT
1041 TGTGGAAAAGCTTACATTAATGTTTTCTACCTTCTAGAAGGTGTAAGAAGTCGAACTGGAGAGAAGCCTTTTACCTGTAA
1121 TGCATGTAGGAAGCCTTACATTAATTCCACAGAATTTTTTTTACACATGTAAAATTACCTCAGAACCCTGGGAAGGTAAG
1201 GAATATGGTATAACCTTTAAATATTTCACATGCCATAATAAGTACATGAATTCTGATAATACTGTACCGTTTCTTGAGTA
1281 GTGTTAGTACCTTATACTATCAAAATAATCCTAAATCCTCCCTCTCAGACCTTCCATCATTACTATATTTCACTTTTATG
1361 CCTATAAACACACACAAATTAGCATATGTAATCTAATACATTGTAGCTATTTTTCAGAAGTTATCAGATCAATTAAGTAT
1441 TAGAAAAATAAACATTTTTATTTTACCTTCACTTCTTCCTTCTATGCTCAAAGTTGGATGTAATTCTTATACTTGATCCT
1521 CAATACTTAAAGCATTTCCCCCCCTCTGGCTTCTATGAAAATTTTTTGTTATCTTTGATATTCTGTTATTTTTAAATGAT
1601 ATGCCTAGGTATAGGTTTTTGGTGCTCGTCCTTCTTGGTGTTTGCTTAGCCTCCTGGATTTGCGTTTTGGTGTCTGAGTT
1681 AATTTTGAGAAATTCTGTCATTGTTTCCCTTTTTTTTTCTTTCCATCTGGTATTTCCTTTATATGTAGGATACATCTTTT
1761 GTAGTTATCCCACAGTTCTTATATCTTGTTTTTTTATTCTTCTCTTTGCTTTTCAGGTGTGGATGTTTCTGCTGATATAT
1841 TCTCAAGCTCTTTAGTTGGCTGTTTCTTGGCCAATAATAAGCCTACCAAAGACATTCTTCATTTCTGTTACACTGTCTTC
1921 AATTTCTAGCATTTCTTTGTGGTTCTTAGAATTTCCATCTCTGTGTTTACACTGCCTGTCTGTTCTTGGATGCTGTCTGC
2001 TTTATCCAGTAGAACCCATGGCATATCAATCATAATTGTTTTAAATTCCCAGTCTGATAATTTCAGCAATCCTGCTATAT
2081 CTGGTTCTGGTTCTTACTCTTTCTCTTTAAACTAACTTTTGCCTTTTAGTATGCTTGTAATTTTTCCTTAGCTGGACATG
2161 GCATACTGGATAAGAGGAAATGCTGTAAGCAGGCCTCTAGTAATCATGATAAGCTGTGGGGAGAGGGGCAGCATTCTATT
2241 GTCCAGGGATTAGATGTCAGTCTTGCAGTGAGTCTGTGCTTCTGCACTGTGAACTTCAGTTTTTCCCACCCTTTAGTTGG
2321 GTCAGGATGTATAGAGTTGGCTGGAGTTGGATATTTCCCTTCCTCCAGGTCACTGAAGCTCTGACTAAAACTCCAGGTGT
2401 GGTGGCTTATGCCTGTAATACCAGCACTTTGGGAGGCCAAGGCAGGTGGATCACCTGAGGTTGGGAGTTCATGACCAGCC
2481 TGAATTGCTTGAATCCAGGAGGTGGAGGTCACAGTGAGCCGAGATTGTGATACTGCACTCCAGCCTGGGAAACAGTGAGA
2561 CACTGTCTCAAAAAAATAAATAAATAAATAAAAGGCTAGGCGCAGTGGCTCAACCCTGTAATCCCAGCACTTTGGGAGGC
2641 AGAGGTGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACA
2721 AAAAAATTAGCTGGGTGTGGTGGCGGGCACCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGTGTGAACCC
2801 AGGAGGTGGAGCTTGCAGTGAGCCGAGATCACGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCTGTCTCAAAAC
2881 AACAACAACAACAACAACAACAAAAACCCATCATCAATGCTCAGCCTTTCTTAAACATGAACTCATGGTGGACAGAGCCC
2961 TATGAATGTAAGGAATATAGAGAAGCCATCACTAGTTACTCAAACCTTATTGAATGTGTGAAAATTTACTCTGGAGAGAT
3041 GCCCTTTCAGCATAAGAAATGTTGAAAAGGATTTATATAATCCTTCCTTTTTATTTTTATTTTTATTTTTATTTTTATTT
3121 TTATTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGTGCGATCTCGGCTCACTGCAAGCTCCG
3201 CCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCGCTACCACGCCCGGCTAA
3281 TTTTTTGTATTTTTAGTAGAGACGGGGTTTCACTGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCG
3361 CCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCAGCCAATCCTTCCTTTTTAATATCCACATACA
3441 AACTCACTGAAGAAAAACCCTGAAAATGTAAAGCAATGTTGAAAAACCTAGTTATTTAAATTCATTTCAAGTATATGAAC
3521 TCACATGGTAAAGAAACCCTGTGAATATAAGTAGTATGATAAATTCTTGAATTTTTTTTTTTTTTTTTTTTTTTTTTTGA
3601 GGCAGAGTTTTGCTCTTGTTGCCCAGGCTGGAGTGCAATGGCTCAATCTTGGCTCACTACAACCTCTATCACCCAGGTTC
3681 AAGTGATTATTCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGTACCACCATGCCCAGCTAATTTTGTATTTTT
3761 AGTGAAGGCAGGGATTCTCCATGTTGATCAGGCTGGTCTCGAACTCCTGACCTCCAGTGATCTGCCTGGTTTGACCTCCC
3841 AAAGTGCTGAGATTACAGGCATGAGCCATCACGCCCAGCCAGTTCTTCAATTCTTACAGTCCCTTTCCATGTCATTAAAG
3921 AACTCACACTGGAGAGAAATCTTATCAATGTTAGAATTGTGGTAAAGCTCTCTGTTGTTCCCATTTACATGAAAGATGTG
4001 AACAGTCACATTGTAGAAAAATGCTGTGAGAGTTGGGAATCTGGAACCACTTCTTTATTATCTCAGGTCATAATGAACTT
4081 GTAAGAATTCACAGTGGCAGGAAACCCTATGTAAATGGAAAATATGGGAAAGGCTTCATTTAATCCATAGGACTGATACC
4161 ACAAAACTCCCACTAGGAGAAAACCTATGTTTATACGGAATGTGGGAAAATCTTCACTTATTTCTCAAGCCTTAAAGTGT
4241 ATGTCAGGATTCCCAGTGGAGAGAAGCCATATTGATGTAAGGAATGTGGGAAAGCCCTTGCCTGCCACTTAGTCCTTGAT
4321 AAACATTTTAGAACACAAACTGGAGAGAAACTATGAATTCAAGGATTGTGGGAAAACCCTTTTATGTTCCACAAGCTTTA
4401 ATATTCATATGCAATGTATGCTGGAGAATAACTTGATGACTATAATAAGTGGAATGGCCTAGGTCAGGGATCCCCAAACC
4481 CCTGGGCCATGGACTGGTACTGGTCTGTGGCCTGCTAGGATCCAGGGTGCACAGCAGGAGGTGAATGTAGGATGAGCAAA
4561 CATTACTGCCTGAGCTCAACTTTCTGTCAGATCAGCAGTGGCATTAGATTCTCATAGGAGCATGAACTTTATTGTGAACT
4641 GCACATGCAAGGGATCTAGGTTGCACACTCCTTATGAGAATCTAATGCCTGATGATCTGAACTGGAACAGTTTAATCCCC
4721 AACTCCAGTCCGTGGGAAAAATGTCTTCCACGAAACTGGTCCCTGGTGCCAAAAAGTTAGGGGACCACTGATTTAGATTA
4801 TGTCACATGTCCCATCCACTCATTAACATTAAGGCTTTCATCCCTGGGACCTCAAGATAATGGTGGTATTTAGAGATGTG
4881 GTTTTTTAAAGAGGTGATTTTAAAATGAGGCAGTTAGAATGGGGCCCTCATTCAATATGACTGGTTTCCTTATAAGAAGT
4961 GAAAGAGATACCAGGGTAGCAGGCACAGAATTTTATGTGAAGTGACCGGAAATGGTTACCTTCAAGGCAAAGAGAGATTC
5041 CTGGAGGAGATCCTTCTTTTAAGGCTCATTATAGAGGAAATCATCCTTATCTACACTTTGATCCTGGACTTCCAGCCTCA
5121 AAAATTATGAGCAAATAAATTTCTGTTGTTTAAGCC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cgggucuggucucGACCGAAGu 5'
                       |||||||| 
Target 5' catttccccccctCTGGCTTCt 3'
 1533 - 1554 145.00 -17.30
2 
miRNA  3' cgGGUCUGGUCUCGACCGAAgu 5'
            ||||::  | | ||||||  
Target 5' ctCCAGGT--GTGGTGGCTTat 3'
 2391 - 2410 136.00 -16.30
3 
miRNA  3' cgGGUCUGGUCUCGACCGAAGu 5'
            :|| |:  || ||||:||| 
Target 5' atTCA-ATATGA-CTGGTTTCc 3'
 4930 - 4949 134.00 -11.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30465805 12 COSMIC
COSN30510065 20 COSMIC
COSN30158812 73 COSMIC
COSN28756140 90 COSMIC
COSN30498281 98 COSMIC
COSN30105955 129 COSMIC
COSN7452426 183 COSMIC
COSN9853445 482 COSMIC
COSN4968633 715 COSMIC
COSN8978141 829 COSMIC
COSN1773656 1374 COSMIC
COSN14925570 1506 COSMIC
COSN29519851 1709 COSMIC
COSN25159715 1904 COSMIC
COSN16444228 2011 COSMIC
COSN26867681 2438 COSMIC
COSN17528305 2452 COSMIC
COSN29201742 2514 COSMIC
COSN28465408 2636 COSMIC
COSN20945466 2703 COSMIC
COSN20945465 2713 COSMIC
COSN25589952 2968 COSMIC
COSN22389523 3136 COSMIC
COSN21442058 3144 COSMIC
COSN26387046 3208 COSMIC
COSN26001864 3238 COSMIC
COSN24967455 3372 COSMIC
COSN29176195 3723 COSMIC
COSN1773654 3840 COSMIC
COSN21193436 4126 COSMIC
COSN8978140 4371 COSMIC
COSN28979354 4433 COSMIC
COSN21990029 4454 COSMIC
COSN24990304 4612 COSMIC
COSN6418050 4680 COSMIC
COSN15895897 5014 COSMIC
COSN7452425 5056 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs750951059 1 dbSNP
rs765910931 3 dbSNP
rs775776992 6 dbSNP
rs1256770927 8 dbSNP
rs1215214328 11 dbSNP
rs375265075 14 dbSNP
rs750801851 25 dbSNP
rs1305242844 29 dbSNP
rs768800002 30 dbSNP
rs936881906 34 dbSNP
rs1366394258 36 dbSNP
rs760764784 43 dbSNP
rs781363308 44 dbSNP
rs770657884 46 dbSNP
rs1383099930 49 dbSNP
rs934776367 52 dbSNP
rs924257151 54 dbSNP
rs924691411 60 dbSNP
rs1324636899 63 dbSNP
rs556197434 65 dbSNP
rs977934632 69 dbSNP
rs978660797 70 dbSNP
rs1394589719 73 dbSNP
rs1176942641 74 dbSNP
rs1434967689 75 dbSNP
rs537996694 77 dbSNP
rs1490407449 80 dbSNP
rs1215274927 82 dbSNP
rs567312294 90 dbSNP
rs1186375923 93 dbSNP
rs867757655 95 dbSNP
rs555513285 100 dbSNP
rs917983246 112 dbSNP
rs990841317 114 dbSNP
rs7351051 115 dbSNP
rs879368572 122 dbSNP
rs1386161369 127 dbSNP
rs150533271 131 dbSNP
rs1296427854 140 dbSNP
rs1387185069 148 dbSNP
rs959526856 162 dbSNP
rs1484506886 166 dbSNP
rs1255033145 172 dbSNP
rs1243568622 177 dbSNP
rs1316821115 183 dbSNP
rs1034705906 184 dbSNP
rs1313439244 191 dbSNP
rs1238920672 192 dbSNP
rs1258456271 193 dbSNP
rs981759138 200 dbSNP
rs984809980 202 dbSNP
rs1185831446 205 dbSNP
rs1244060575 207 dbSNP
rs952735722 218 dbSNP
rs1157034252 220 dbSNP
rs1365720113 224 dbSNP
rs1340922279 226 dbSNP
rs950479557 227 dbSNP
rs1454428912 229 dbSNP
rs1172053078 234 dbSNP
rs1279814925 235 dbSNP
rs1412675847 241 dbSNP
rs1401426497 243 dbSNP
rs1450273835 247 dbSNP
rs1338493586 251 dbSNP
rs1383192333 267 dbSNP
rs1445745929 271 dbSNP
rs1375130925 273 dbSNP
rs1025594428 274 dbSNP
rs770044267 277 dbSNP
rs1026064847 309 dbSNP
rs994391840 315 dbSNP
rs1239211546 329 dbSNP
rs994963688 335 dbSNP
rs1303638384 343 dbSNP
rs141686778 352 dbSNP
rs899346634 353 dbSNP
rs199600316 354 dbSNP
rs1170383789 357 dbSNP
rs1457628796 365 dbSNP
rs1478409558 368 dbSNP
rs1426368032 370 dbSNP
rs1186316837 372 dbSNP
rs75235189 373 dbSNP
rs1252994275 374 dbSNP
rs1255129472 374 dbSNP
rs77604854 375 dbSNP
rs1019476126 377 dbSNP
rs1198252779 378 dbSNP
rs1375956885 384 dbSNP
rs1006613775 386 dbSNP
rs541197630 388 dbSNP
rs1053861124 389 dbSNP
rs1006402258 390 dbSNP
rs1271942795 390 dbSNP
rs201978637 390 dbSNP
rs751114285 390 dbSNP
rs1249064667 392 dbSNP
rs1197969583 393 dbSNP
rs1318571643 394 dbSNP
rs1284553761 395 dbSNP
rs1317825338 401 dbSNP
rs188280403 412 dbSNP
rs1202878249 414 dbSNP
rs1253378305 416 dbSNP
rs890690373 422 dbSNP
rs1481098883 435 dbSNP
rs902753671 438 dbSNP
rs1231298739 442 dbSNP
rs745640584 443 dbSNP
rs1200227258 444 dbSNP
rs1429978426 448 dbSNP
rs934659283 449 dbSNP
rs550689477 451 dbSNP
rs529037337 455 dbSNP
rs766046355 470 dbSNP
rs572308516 472 dbSNP
rs1292639828 474 dbSNP
rs1363321878 477 dbSNP
rs947429442 479 dbSNP
rs187649381 481 dbSNP
rs1340451745 483 dbSNP
rs1371312828 491 dbSNP
rs757144846 496 dbSNP
rs1298215386 499 dbSNP
rs148390332 508 dbSNP
rs1244479165 509 dbSNP
rs1289952335 515 dbSNP
rs909336780 515 dbSNP
rs1262484354 518 dbSNP
rs1485522605 531 dbSNP
rs1403163223 533 dbSNP
rs528109345 536 dbSNP
rs981811309 539 dbSNP
rs1369358685 541 dbSNP
rs777087112 541 dbSNP
rs1383013962 542 dbSNP
rs758039021 542 dbSNP
rs1187843742 545 dbSNP
rs561387818 551 dbSNP
rs950776203 564 dbSNP
rs1291185858 572 dbSNP
rs545305721 574 dbSNP
rs1395869890 580 dbSNP
rs1025958948 582 dbSNP
rs973197598 594 dbSNP
rs1361869288 602 dbSNP
rs757910497 604 dbSNP
rs1285431591 622 dbSNP
rs963440969 626 dbSNP
rs373369808 628 dbSNP
rs1239939388 637 dbSNP
rs1218006441 645 dbSNP
rs1019423827 648 dbSNP
rs1211677245 652 dbSNP
rs1006769451 653 dbSNP
rs1017801979 654 dbSNP
rs1446102795 661 dbSNP
rs1163881988 669 dbSNP
rs1008134142 694 dbSNP
rs1265767081 699 dbSNP
rs890748131 702 dbSNP
rs1030543497 704 dbSNP
rs146188908 705 dbSNP
rs1315401888 706 dbSNP
rs116471481 710 dbSNP
rs903205666 714 dbSNP
rs1379128696 716 dbSNP
rs1043013620 717 dbSNP
rs544285176 726 dbSNP
rs1371456194 736 dbSNP
rs574080201 739 dbSNP
rs1000922882 740 dbSNP
rs902153421 746 dbSNP
rs555854084 751 dbSNP
rs894536975 762 dbSNP
rs1452052256 765 dbSNP
rs1042460888 767 dbSNP
rs1183966337 769 dbSNP
rs1054999247 771 dbSNP
rs896746053 777 dbSNP
rs541214479 779 dbSNP
rs566870279 780 dbSNP
rs754722938 788 dbSNP
rs538753939 789 dbSNP
rs1174970332 793 dbSNP
rs1408905504 795 dbSNP
rs1191698987 798 dbSNP
rs1470548248 800 dbSNP
rs1046361910 802 dbSNP
rs1451002453 805 dbSNP
rs141567111 807 dbSNP
rs1444584006 810 dbSNP
rs1280230468 817 dbSNP
rs182037640 819 dbSNP
rs1367054968 820 dbSNP
rs1221729576 821 dbSNP
rs938215781 823 dbSNP
rs909275395 825 dbSNP
rs1271942139 828 dbSNP
rs73002164 830 dbSNP
rs929397428 831 dbSNP
rs190351999 832 dbSNP
rs4804111 833 dbSNP
rs963193997 836 dbSNP
rs1196650481 841 dbSNP
rs762171467 846 dbSNP
rs910292433 847 dbSNP
rs747527503 857 dbSNP
rs965288593 858 dbSNP
rs985858694 860 dbSNP
rs1329837733 861 dbSNP
rs912519227 864 dbSNP
rs74397054 867 dbSNP
rs1304972292 871 dbSNP
rs1347327903 873 dbSNP
rs1030427439 880 dbSNP
rs536662030 886 dbSNP
rs185269091 887 dbSNP
rs373074382 889 dbSNP
rs967583713 904 dbSNP
rs1273359473 905 dbSNP
rs1232581207 908 dbSNP
rs1332228742 921 dbSNP
rs193047241 922 dbSNP
rs1490661841 927 dbSNP
rs1380889045 928 dbSNP
rs1371812598 936 dbSNP
rs764577972 941 dbSNP
rs1000592460 943 dbSNP
rs543320119 946 dbSNP
rs1422903313 951 dbSNP
rs1165585015 952 dbSNP
rs1056283256 957 dbSNP
rs145920906 958 dbSNP
rs1002923189 959 dbSNP
rs906385588 961 dbSNP
rs1046247107 965 dbSNP
rs929238643 967 dbSNP
rs1013243246 971 dbSNP
rs763058100 978 dbSNP
rs545287602 979 dbSNP
rs941696261 980 dbSNP
rs1359580888 981 dbSNP
rs887926189 984 dbSNP
rs1260331343 986 dbSNP
rs547719541 1000 dbSNP
rs910185511 1002 dbSNP
rs188591208 1004 dbSNP
rs954438285 1005 dbSNP
rs1185715035 1013 dbSNP
rs1040392853 1014 dbSNP
rs1453236043 1021 dbSNP
rs923463596 1029 dbSNP
rs1382719791 1052 dbSNP
rs775481077 1056 dbSNP
rs1402329228 1061 dbSNP
rs912466952 1065 dbSNP
rs1321000261 1068 dbSNP
rs183817510 1082 dbSNP
rs562721533 1083 dbSNP
rs1262147515 1085 dbSNP
rs985354064 1092 dbSNP
rs769954398 1093 dbSNP
rs932574104 1098 dbSNP
rs1258364649 1107 dbSNP
rs1353509578 1109 dbSNP
rs1422877207 1116 dbSNP
rs1209854526 1119 dbSNP
rs544372790 1121 dbSNP
rs925107252 1137 dbSNP
rs979679253 1139 dbSNP
rs1185808748 1141 dbSNP
rs966485038 1143 dbSNP
rs1020693819 1144 dbSNP
rs1179760791 1151 dbSNP
rs1365572413 1152 dbSNP
rs1278433571 1155 dbSNP
rs991772262 1157 dbSNP
rs1033321507 1163 dbSNP
rs960384892 1163 dbSNP
rs990375596 1164 dbSNP
rs574194450 1165 dbSNP
rs1027782556 1169 dbSNP
rs562003742 1178 dbSNP
rs1340328219 1195 dbSNP
rs1034332883 1196 dbSNP
rs1002983930 1206 dbSNP
rs1337057660 1208 dbSNP
rs994107988 1214 dbSNP
rs897898524 1216 dbSNP
rs1040507911 1219 dbSNP
rs944793627 1220 dbSNP
rs1362127664 1224 dbSNP
rs191458437 1235 dbSNP
rs1024849910 1238 dbSNP
rs1252905835 1258 dbSNP
rs1413418253 1266 dbSNP
rs149401687 1268 dbSNP
rs186615231 1269 dbSNP
rs1428524863 1271 dbSNP
rs80165593 1272 dbSNP
rs1178349766 1282 dbSNP
rs375146328 1284 dbSNP
rs575636632 1285 dbSNP
rs1461267736 1291 dbSNP
rs557314258 1298 dbSNP
rs777759252 1299 dbSNP
rs945230279 1307 dbSNP
rs1301915451 1313 dbSNP
rs1344185160 1315 dbSNP
rs1225832772 1324 dbSNP
rs1194177805 1329 dbSNP
rs913634936 1331 dbSNP
rs1050030635 1336 dbSNP
rs535608853 1339 dbSNP
rs771940055 1341 dbSNP
rs1225686460 1342 dbSNP
rs1253372222 1343 dbSNP
rs1483467437 1360 dbSNP
rs960454093 1362 dbSNP
rs138898543 1364 dbSNP
rs11666253 1368 dbSNP
rs1280776571 1375 dbSNP
rs952325641 1377 dbSNP
rs1256345287 1390 dbSNP
rs1267943626 1393 dbSNP
rs1028352138 1395 dbSNP
rs1427761617 1402 dbSNP
rs1168052471 1404 dbSNP
rs946218436 1409 dbSNP
rs1374436268 1419 dbSNP
rs914710660 1424 dbSNP
rs1317883652 1427 dbSNP
rs1363217719 1437 dbSNP
rs1259248273 1440 dbSNP
rs200259856 1440 dbSNP
rs202112590 1441 dbSNP
rs1361866429 1442 dbSNP
rs1220917412 1450 dbSNP
rs1380891629 1454 dbSNP
rs1353886124 1456 dbSNP
rs1034794445 1466 dbSNP
rs897974612 1475 dbSNP
rs981435274 1484 dbSNP
rs1019140358 1486 dbSNP
rs971512626 1493 dbSNP
rs1008952960 1507 dbSNP
rs889208119 1512 dbSNP
rs1222380847 1518 dbSNP
rs1266030554 1519 dbSNP
rs1485463719 1519 dbSNP
rs1184572529 1524 dbSNP
rs1050447433 1529 dbSNP
rs1025736629 1533 dbSNP
rs936035675 1537 dbSNP
rs903755725 1538 dbSNP
rs551784538 1540 dbSNP
rs1171295713 1542 dbSNP
rs184173548 1543 dbSNP
rs1313263373 1545 dbSNP
rs1452346499 1545 dbSNP
rs1385254858 1551 dbSNP
rs193057778 1555 dbSNP
rs1306306205 1557 dbSNP
rs550873736 1562 dbSNP
rs1162920604 1563 dbSNP
rs74178155 1569 dbSNP
rs1213502766 1583 dbSNP
rs74178154 1586 dbSNP
rs1473271448 1597 dbSNP
rs1269924681 1598 dbSNP
rs1465229297 1603 dbSNP
rs1239405014 1605 dbSNP
rs754614768 1608 dbSNP
rs1473543233 1613 dbSNP
rs529423506 1615 dbSNP
rs939063473 1620 dbSNP
rs1416759677 1621 dbSNP
rs1162059495 1622 dbSNP
rs753561572 1623 dbSNP
rs1050085749 1627 dbSNP
rs932983693 1628 dbSNP
rs1361125541 1630 dbSNP
rs901475353 1644 dbSNP
rs1279063886 1646 dbSNP
rs1041455081 1648 dbSNP
rs1371324464 1654 dbSNP
rs1289569603 1657 dbSNP
rs945784828 1657 dbSNP
rs1229220903 1662 dbSNP
rs531282904 1663 dbSNP
rs779912997 1664 dbSNP
rs1444026856 1668 dbSNP
rs1210435673 1676 dbSNP
rs1443819815 1676 dbSNP
rs1231934289 1678 dbSNP
rs562356557 1693 dbSNP
rs990323049 1699 dbSNP
rs73923605 1709 dbSNP
rs1183708543 1710 dbSNP
rs201730911 1719 dbSNP
rs972698966 1719 dbSNP
rs1331981242 1725 dbSNP
rs1448850102 1745 dbSNP
rs1427646496 1753 dbSNP
rs927568488 1754 dbSNP
rs1019084561 1765 dbSNP
rs1009110524 1767 dbSNP
rs1348017852 1788 dbSNP
rs981651359 1795 dbSNP
rs953436565 1796 dbSNP
rs1411749009 1797 dbSNP
rs1308656093 1804 dbSNP
rs1351058718 1804 dbSNP
rs1404219439 1812 dbSNP
rs1281267413 1816 dbSNP
rs971396247 1819 dbSNP
rs1346923058 1824 dbSNP
rs1219571996 1840 dbSNP
rs918564072 1845 dbSNP
rs972831914 1846 dbSNP
rs1251844067 1862 dbSNP
rs962808781 1866 dbSNP
rs573318108 1868 dbSNP
rs751911076 1876 dbSNP
rs1167638446 1883 dbSNP
rs1417656828 1894 dbSNP
rs1000182378 1897 dbSNP
rs564450855 1910 dbSNP
rs904498312 1913 dbSNP
rs1365082303 1917 dbSNP
rs1016538615 1927 dbSNP
rs1041729722 1935 dbSNP
rs1403158625 1939 dbSNP
rs546188654 1942 dbSNP
rs1321575666 1947 dbSNP
rs1332754352 1963 dbSNP
rs1157010070 1965 dbSNP
rs1269315365 1972 dbSNP
rs1009405098 1975 dbSNP
rs1006044866 1978 dbSNP
rs764641149 1981 dbSNP
rs1358163610 1983 dbSNP
rs1219618991 1987 dbSNP
rs953458314 1989 dbSNP
rs1292653393 1993 dbSNP
rs1181092811 1995 dbSNP
rs763392705 1996 dbSNP
rs1246616194 1997 dbSNP
rs752733749 1998 dbSNP
rs773046930 2004 dbSNP
rs188940039 2019 dbSNP
rs73923604 2021 dbSNP
rs183493024 2027 dbSNP
rs1237443107 2029 dbSNP
rs1045192169 2031 dbSNP
rs1010432443 2037 dbSNP
rs1165008783 2041 dbSNP
rs1392809542 2050 dbSNP
rs930423258 2055 dbSNP
rs1352375627 2063 dbSNP
rs574543278 2065 dbSNP
rs892879527 2071 dbSNP
rs1055075925 2072 dbSNP
rs1436974815 2073 dbSNP
rs920221229 2074 dbSNP
rs1242005954 2077 dbSNP
rs368737780 2080 dbSNP
rs937529197 2089 dbSNP
rs1357715447 2099 dbSNP
rs971761777 2099 dbSNP
rs962288628 2105 dbSNP
rs912184786 2109 dbSNP
rs987626872 2116 dbSNP
rs1242765444 2132 dbSNP
rs1442946878 2140 dbSNP
rs927412102 2146 dbSNP
rs553167673 2156 dbSNP
rs1369089485 2157 dbSNP
rs1436933526 2163 dbSNP
rs1351341353 2166 dbSNP
rs1157971480 2167 dbSNP
rs1046027006 2183 dbSNP
rs150207484 2193 dbSNP
rs953548991 2194 dbSNP
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rs1029179368 2199 dbSNP
rs1404932118 2211 dbSNP
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rs1393893499 2215 dbSNP
rs1335747272 2216 dbSNP
rs1340605479 2218 dbSNP
rs963153691 2220 dbSNP
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rs1229409853 2241 dbSNP
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rs765305141 2248 dbSNP
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rs997405052 2254 dbSNP
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rs1157446889 4897 dbSNP
rs930702415 4904 dbSNP
rs1345792241 4906 dbSNP
rs1032912829 4911 dbSNP
rs547418087 4912 dbSNP
rs141576723 4919 dbSNP
rs1194957097 4925 dbSNP
rs919786976 4928 dbSNP
rs1248017549 4930 dbSNP
rs1365447673 4932 dbSNP
rs761620729 4940 dbSNP
rs902994708 4948 dbSNP
rs973866795 4950 dbSNP
rs767232509 4952 dbSNP
rs1479948952 4953 dbSNP
rs1018149588 4979 dbSNP
rs1461813403 4983 dbSNP
rs949799283 4983 dbSNP
rs564800755 4986 dbSNP
rs1055855633 4987 dbSNP
rs776463155 4988 dbSNP
rs1368957013 4989 dbSNP
rs1303336471 4990 dbSNP
rs1487368129 4990 dbSNP
rs955086957 4997 dbSNP
rs1226562879 5006 dbSNP
rs761761078 5007 dbSNP
rs62105678 5008 dbSNP
rs1272069956 5009 dbSNP
rs1353545446 5010 dbSNP
rs191606586 5014 dbSNP
rs1268699299 5024 dbSNP
rs1223289782 5035 dbSNP
rs576127980 5038 dbSNP
rs930220701 5044 dbSNP
rs922729020 5049 dbSNP
rs1164487554 5053 dbSNP
rs748786694 5054 dbSNP
rs1463101143 5061 dbSNP
rs560970768 5065 dbSNP
rs1324294709 5086 dbSNP
rs565588252 5091 dbSNP
rs1018386339 5092 dbSNP
rs1382290749 5095 dbSNP
rs1387053315 5096 dbSNP
rs542697300 5109 dbSNP
rs1293343440 5112 dbSNP
rs1012425323 5113 dbSNP
rs1342144782 5123 dbSNP
rs1334539846 5129 dbSNP
rs1469121728 5136 dbSNP
rs989867857 5147 dbSNP
rs1178287036 5149 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000253115.2 | 3UTR | AUGUAAUUCUUAUACUUGAUCCUCAAUACUUAAAGCAUUUCCCCCCCUCUGGCUUCUAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
91 hsa-miR-4786-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055412 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 6
MIRT219055 TAF8 TATA-box binding protein associated factor 8 2 4
MIRT247423 ATP2A2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 2 2
MIRT301990 NUP50 nucleoporin 50 2 4
MIRT344711 ZNF207 zinc finger protein 207 2 2
MIRT409792 FOXO3 forkhead box O3 2 2
MIRT441666 SEPT3 septin 3 2 2
MIRT441708 RP1L1 RP1 like 1 2 2
MIRT441843 SYT11 synaptotagmin 11 2 2
MIRT441862 TEX35 testis expressed 35 2 2
MIRT441872 PPP1R15B protein phosphatase 1 regulatory subunit 15B 2 2
MIRT442363 ZC3H12C zinc finger CCCH-type containing 12C 2 2
MIRT442588 HOXD9 homeobox D9 2 2
MIRT442891 RHCG Rh family C glycoprotein 2 2
MIRT443100 RNF20 ring finger protein 20 2 2
MIRT443238 ANKRD26 ankyrin repeat domain 26 2 2
MIRT443611 OR2D2 olfactory receptor family 2 subfamily D member 2 2 2
MIRT443637 ELP6 elongator acetyltransferase complex subunit 6 2 2
MIRT449298 SMIM19 small integral membrane protein 19 2 2
MIRT449581 ZNF510 zinc finger protein 510 2 2
MIRT450699 RORA RAR related orphan receptor A 2 2
MIRT455269 DDX39B DExD-box helicase 39B 2 10
MIRT456608 SFMBT2 Scm like with four mbt domains 2 2 2
MIRT461509 NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 2 2
MIRT461710 ZNF426 zinc finger protein 426 2 2
MIRT463760 YPEL2 yippee like 2 2 2
MIRT465221 TRIP10 thyroid hormone receptor interactor 10 2 2
MIRT466648 TAGLN2 transgelin 2 2 2
MIRT473046 MPRIP myosin phosphatase Rho interacting protein 2 2
MIRT473184 MKNK2 MAP kinase interacting serine/threonine kinase 2 2 4
MIRT478996 COLGALT1 collagen beta(1-O)galactosyltransferase 1 2 2
MIRT479650 CD4 CD4 molecule 2 2
MIRT480329 C5orf51 chromosome 5 open reading frame 51 2 2
MIRT484162 FAM71B family with sequence similarity 71 member B 2 2
MIRT487586 FAM83H family with sequence similarity 83 member H 2 2
MIRT487598 NKD2 naked cuticle homolog 2 2 4
MIRT494852 ANKRD24 ankyrin repeat domain 24 2 2
MIRT494931 TMEM167A transmembrane protein 167A 2 2
MIRT495227 SIK2 salt inducible kinase 2 2 4
MIRT496088 C17orf85 nuclear cap binding subunit 3 2 2
MIRT496172 RPL35A ribosomal protein L35a 2 4
MIRT496729 GPR180 G protein-coupled receptor 180 2 2
MIRT496786 COL9A2 collagen type IX alpha 2 chain 2 2
MIRT496844 KCNIP2 potassium voltage-gated channel interacting protein 2 2 2
MIRT497924 BTG1 BTG anti-proliferation factor 1 2 2
MIRT512249 ARPP19 cAMP regulated phosphoprotein 19 2 4
MIRT513269 SCUBE1 signal peptide, CUB domain and EGF like domain containing 1 2 4
MIRT525310 FANCA Fanconi anemia complementation group A 2 4
MIRT525805 SOD2 superoxide dismutase 2 2 2
MIRT526178 HEPH hephaestin 2 2
MIRT530555 NKIRAS2 NFKB inhibitor interacting Ras like 2 2 4
MIRT531431 MPZL3 myelin protein zero like 3 2 2
MIRT531715 TARS threonyl-tRNA synthetase 2 2
MIRT531812 POLD3 DNA polymerase delta 3, accessory subunit 2 2
MIRT536185 MAOB monoamine oxidase B 2 2
MIRT541015 WIPI2 WD repeat domain, phosphoinositide interacting 2 2 2
MIRT544685 ZNF224 zinc finger protein 224 2 4
MIRT560194 CACNG7 calcium voltage-gated channel auxiliary subunit gamma 7 2 2
MIRT560214 SLC7A1 solute carrier family 7 member 1 2 2
MIRT560703 PRPF4B pre-mRNA processing factor 4B 2 2
MIRT561023 LIN7C lin-7 homolog C, crumbs cell polarity complex component 2 2
MIRT562249 GRWD1 glutamate rich WD repeat containing 1 2 2
MIRT566256 PTBP1 polypyrimidine tract binding protein 1 2 2
MIRT610519 HIAT1 major facilitator superfamily domain containing 14A 2 2
MIRT611255 EHD3 EH domain containing 3 2 2
MIRT625352 MGLL monoglyceride lipase 2 2
MIRT633625 R3HDM2 R3H domain containing 2 2 2
MIRT633638 CASC5 kinetochore scaffold 1 2 2
MIRT643514 CCDC115 coiled-coil domain containing 115 2 2
MIRT647629 PELI3 pellino E3 ubiquitin protein ligase family member 3 2 2
MIRT651218 ZNF225 zinc finger protein 225 2 2
MIRT656738 LMBR1L limb development membrane protein 1 like 2 2
MIRT658055 FSD1L fibronectin type III and SPRY domain containing 1 like 2 2
MIRT662937 PSMB2 proteasome subunit beta 2 2 2
MIRT666735 RALY RALY heterogeneous nuclear ribonucleoprotein 2 2
MIRT667491 MACROD2 MACRO domain containing 2 2 2
MIRT668131 GJD2 gap junction protein delta 2 2 2
MIRT671644 FBXO36 F-box protein 36 2 2
MIRT674924 TRPM6 transient receptor potential cation channel subfamily M member 6 2 2
MIRT704425 CTNNBIP1 catenin beta interacting protein 1 2 2
MIRT709712 DNAJC11 DnaJ heat shock protein family (Hsp40) member C11 2 2
MIRT710068 UBL4A ubiquitin like 4A 2 2
MIRT716227 DGKI diacylglycerol kinase iota 2 2
MIRT716265 TOM1 target of myb1 membrane trafficking protein 2 2
MIRT719906 SERP1 stress associated endoplasmic reticulum protein 1 2 2
MIRT720888 CSGALNACT1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 2 2
MIRT721388 ATP13A4 ATPase 13A4 2 2
MIRT721938 LGR4 leucine rich repeat containing G protein-coupled receptor 4 2 2
MIRT722947 SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 2 2
MIRT724745 ZNF391 zinc finger protein 391 2 2
MIRT724761 PSG4 pregnancy specific beta-1-glycoprotein 4 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4786 Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)
hsa-miR-4786-3p Cisplatin 5460033 NSC119875 approved sensitive High Ovarian Cancer cell line (A2780CIS)
hsa-miR-4786-3p Cisplatin 5460033 NSC119875 approved sensitive High Ovarian Cancer cell line (A2780CP20)
hsa-miR-4786-3p Cisplatin 5460033 NSC119875 approved resistant Low Oral Cancer cell line (CAL-27, HSC3, SCC-25, HOK, SCC-9)
hsa-miR-4786-3p Fluorouracil 3385 NSC19893 approved resistant Low Oral Cancer cell line (CAL-27, HSC3, SCC-25, HOK, SCC-9)
hsa-miR-4786-3p Docetaxel 148124 NSC628503 approved resistant High Breast Cancer cell line (MDA-MB-231, MCF-7)
hsa-miR-4786-3p Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-4786-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-4786-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-4786-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-4786-3p Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-miR-4786-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (CP20)
hsa-miR-4786-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (CIS)

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