pre-miRNA Information
pre-miRNA hsa-mir-4433a   
Genomic Coordinates chr2: 64340759 - 64340839
Description Homo sapiens miR-4433a stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4433a-3p
Sequence 51| ACAGGAGUGGGGGUGGGACAU |71
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs751480515 9 dbSNP
rs557760377 15 dbSNP
rs1479580865 20 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SNAP23   
Synonyms HsT17016, SNAP-23, SNAP23A, SNAP23B
Description synaptosome associated protein 23
Transcript NM_003825   
Other Transcripts NM_130798   
Expression
Putative miRNA Targets on SNAP23
3'UTR of SNAP23
(miRNA target sites are highlighted)
>SNAP23|NM_003825|3'UTR
   1 AGCTACTGCTGTTCTTCTTTATCATTTATTCACTTCCGTAGCTCCTCCTTGAAAGTTATTACCTTTTCAGAGTTTAAGTT
  81 TTCGGTTCCACGCTCTTCTAATTGGGAGATAATATGGAAGAAGGGCCAGAGCAGTTACAGCCCTCCTTCTTTTTTGTTTT
 161 CTGTTGAGGGCCGACTGCTGCTCTGCCTTCCTTCTAGTATTTTCTTTCTCAATTCATACGCTTAGATTGGTTTTCATATG
 241 TCATGTTTAGTGTTTTCATCCTCCTCATATACTTCAGCAGGTTCTTTTGCTTTCAAGATTTGGAAGCATTGCCAAAGACA
 321 GCCATGAAGAAGGAAGCTGTAGAGGTGTTTTTTGTTGTTGTTTATTTTTGCTTTTGTGGTTGAGGGAAGGACAAGAGATA
 401 AGAGGTTGTTACCTCAGTAAAAACCTTCAGGCCACAAAGCAAAAAGTTGCATAGCCACAACGAAGATCTAGTTGGATATA
 481 GTTTTTGATTTAAGTTGCAGTTATAGCCAATTTAGGCTAATGCTTGGTTTTGGAGCTTTTATACACAACGTTTTTGTTAG
 561 GCATCACAGTTTTGCAACCTCTGCTCCAAAGAGAAAAATAGAATGAGTTTTCTTTCTTTTTTTTTTTTTTGGAGTCAGAG
 641 TCTCGCTCTCTTGTCCAGGCTGGAGTGCAATAGCGCGATCTGGGCTCACTGCAACCTCCGCCTCCCTGGTTCAAGCAATT
 721 CTCCTGCCTTGCCTCCTGAGTAGCTGGGATTACAGGCGTGTGTCACCACGCTCGGCTAATTTTTGTATTTTTAGTAGAGA
 801 CAGGGTTTCACCATGTCAAGCTGGTCTTGGACTCCTGACGTCGTGATCCACCCGCCTTGGCCTCCCAAAGTACTGGGATT
 881 ACAGGCGTGAGCCACTGTGCCTGGCTGAGTTTTCTTAAAGTGAGCTTAATTTCTGAACTCTTAGTGATTCATATATGTAC
 961 ATAAATCTGTGATCCCATTTCTTATTGCACCATTCAGGAACACTTTATATAAATGAGTGGCTTTTTATTTCATATTATTA
1041 GTAGTATCATGGTTCCATTACAGGCCTATTAACATCATACATTGTCATTAGTCTTTGAAGAAAAAATATGTAAATATATA
1121 TGTGTAACATGAGAATTTCTCTCTAAAGCAGGGCTTAAAATTTTTTGGAAAAGTTTGACAAAGCATACCACATGAATTCA
1201 GATTTACCTCAATGCTAAGAATTATGTTTAGTTAGGAAAAAGGAAAGTCATTTTGACCTCAGGTAGAAAAATAGATTGCT
1281 TTGAGTTTTATGTAGCTTTAGACTTTAAAAAGTTAGAATTTATTCTGTAACTAAAAATTATTTGAAAAAATTATGCCTCT
1361 GGTTTAATTATTGGTGATTACACACTCTTTCTCTTACCCTTGTGTATTGAACTATGTCCATAATCAAGTTGATGTGGATC
1441 CTGAAAAGTGTTATGAACATCTGATTGGTATTTGTCACATTTATTTTAAAATTAGCATCTGAACACTTCAAAGCTGTCAG
1521 TGTGTATTGGTTTCACCAATAACCACTGCTTGATCCTTACAATTAAATTTTTTAACTAACTAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uaCAG---GGUGGGGG--UGAGGACa 5'
            |||   |:: :|::  ||||||| 
Target 5' atGTCAAGCTGGTCTTGGACTCCTGa 3'
813 - 838 145.00 -16.40
2
miRNA  3' uacAGGGUGGGGGUGAGGACa 5'
             |||::||::  |||||| 
Target 5' ttcTCCTGCCTTGCCTCCTGa 3'
719 - 739 134.00 -18.50
3
miRNA  3' uacaGGGUGGGGG---UGAGGAca 5'
              ::|||::||   :|||||  
Target 5' tttaTTCACTTCCGTAGCTCCTcc 3'
25 - 48 121.00 -17.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31580319 27 COSMIC
COSN30134710 39 COSMIC
COSN30501406 48 COSMIC
COSN510807 69 COSMIC
COSN31524941 78 COSMIC
COSN30472810 109 COSMIC
COSN28599603 113 COSMIC
COSN30450752 128 COSMIC
COSN31603607 133 COSMIC
COSN31530223 285 COSMIC
COSN31515763 330 COSMIC
COSN29462265 346 COSMIC
COSN22489787 350 COSMIC
COSN30540603 371 COSMIC
COSN30161886 1101 COSMIC
COSN31541016 1248 COSMIC
COSN31607640 1317 COSMIC
COSN8744238 1330 COSMIC
COSN31535943 1376 COSMIC
COSN31512879 1443 COSMIC
COSN31594985 1514 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs758368863 6 dbSNP
rs1338928041 8 dbSNP
rs1394781229 11 dbSNP
rs1299971538 12 dbSNP
rs1437033129 13 dbSNP
rs772606719 15 dbSNP
rs775807926 19 dbSNP
rs760837005 20 dbSNP
rs764017582 21 dbSNP
rs1455182626 24 dbSNP
rs1212050877 30 dbSNP
rs542540620 33 dbSNP
rs34405800 36 dbSNP
rs374999742 38 dbSNP
rs766344395 39 dbSNP
rs781305757 45 dbSNP
rs751370753 49 dbSNP
rs1187546994 56 dbSNP
rs755014436 59 dbSNP
rs1163349168 60 dbSNP
rs1415809228 63 dbSNP
rs1177314035 65 dbSNP
rs767513736 70 dbSNP
rs752509743 73 dbSNP
rs561636566 81 dbSNP
rs777132028 84 dbSNP
rs771146201 85 dbSNP
rs1434376000 86 dbSNP
rs1295488093 88 dbSNP
rs774632715 90 dbSNP
rs552724273 92 dbSNP
rs759674294 93 dbSNP
rs1324038894 98 dbSNP
rs772281385 101 dbSNP
rs1201712071 102 dbSNP
rs1290594886 107 dbSNP
rs939083838 110 dbSNP
rs1057334163 114 dbSNP
rs895983138 116 dbSNP
rs146015128 119 dbSNP
rs373411749 119 dbSNP
rs1199898870 121 dbSNP
rs527265901 125 dbSNP
rs547108563 130 dbSNP
rs1044674025 132 dbSNP
rs564207384 135 dbSNP
rs1432739182 141 dbSNP
rs532927058 142 dbSNP
rs575278112 146 dbSNP
rs56125021 150 dbSNP
rs1000221779 153 dbSNP
rs989875362 156 dbSNP
rs1175746576 157 dbSNP
rs1397277653 162 dbSNP
rs1411770157 164 dbSNP
rs762587193 169 dbSNP
rs1032074593 173 dbSNP
rs748610970 174 dbSNP
rs914293374 182 dbSNP
rs772769603 194 dbSNP
rs377127825 198 dbSNP
rs948417963 201 dbSNP
rs1044021346 204 dbSNP
rs188966860 217 dbSNP
rs1220898826 218 dbSNP
rs1437546107 220 dbSNP
rs569518773 221 dbSNP
rs1341739474 224 dbSNP
rs974515658 232 dbSNP
rs1296514953 234 dbSNP
rs1212621062 245 dbSNP
rs11549246 247 dbSNP
rs1275417321 259 dbSNP
rs920529472 259 dbSNP
rs535338135 267 dbSNP
rs548880570 270 dbSNP
rs117476614 273 dbSNP
rs1429915657 276 dbSNP
rs1369589027 282 dbSNP
rs907524483 295 dbSNP
rs1339469477 306 dbSNP
rs534175283 309 dbSNP
rs1435326635 320 dbSNP
rs201881933 327 dbSNP
rs776268336 330 dbSNP
rs1477073992 336 dbSNP
rs1253995512 338 dbSNP
rs1222901003 340 dbSNP
rs553923610 341 dbSNP
rs1482828865 347 dbSNP
rs1272783131 348 dbSNP
rs1202157021 349 dbSNP
rs889859116 352 dbSNP
rs1301893837 355 dbSNP
rs1006938017 358 dbSNP
rs1343585304 371 dbSNP
rs1289633592 372 dbSNP
rs1056617531 383 dbSNP
rs1349469560 386 dbSNP
rs1296130454 394 dbSNP
rs916298241 405 dbSNP
rs1019616889 406 dbSNP
rs965371654 411 dbSNP
rs1198565354 433 dbSNP
rs1373643729 436 dbSNP
rs1476398505 440 dbSNP
rs1166231591 443 dbSNP
rs1419020776 446 dbSNP
rs1472334980 451 dbSNP
rs997843555 452 dbSNP
rs1183890258 453 dbSNP
rs577256948 461 dbSNP
rs539558497 462 dbSNP
rs1044561933 463 dbSNP
rs181654094 467 dbSNP
rs956079255 468 dbSNP
rs1228438297 469 dbSNP
rs866393586 472 dbSNP
rs989927787 477 dbSNP
rs1305240109 482 dbSNP
rs914345878 488 dbSNP
rs904801383 495 dbSNP
rs576729451 498 dbSNP
rs1302593733 499 dbSNP
rs886696923 509 dbSNP
rs1450943377 517 dbSNP
rs969772794 530 dbSNP
rs1160608871 533 dbSNP
rs1319539019 542 dbSNP
rs1409929047 543 dbSNP
rs1167022507 545 dbSNP
rs139914618 545 dbSNP
rs1255759845 549 dbSNP
rs1181042796 550 dbSNP
rs185545020 551 dbSNP
rs1249810609 559 dbSNP
rs938339134 567 dbSNP
rs1267931150 591 dbSNP
rs562349763 592 dbSNP
rs1352681137 593 dbSNP
rs1053161302 598 dbSNP
rs1246387922 609 dbSNP
rs1258364509 609 dbSNP
rs1338288046 615 dbSNP
rs1244201121 617 dbSNP
rs1311631296 617 dbSNP
rs766836227 617 dbSNP
rs1243771609 630 dbSNP
rs75635089 631 dbSNP
rs1246235948 632 dbSNP
rs62019290 633 dbSNP
rs918834547 634 dbSNP
rs1221547089 637 dbSNP
rs367817702 637 dbSNP
rs891789230 645 dbSNP
rs1048593127 646 dbSNP
rs1262258900 647 dbSNP
rs1448691305 649 dbSNP
rs1191049534 654 dbSNP
rs572699561 658 dbSNP
rs1391722524 660 dbSNP
rs1008860315 665 dbSNP
rs564171566 670 dbSNP
rs1259601675 671 dbSNP
rs964737123 675 dbSNP
rs1190062002 676 dbSNP
rs1383678887 677 dbSNP
rs1424353500 678 dbSNP
rs1228174974 681 dbSNP
rs995988923 682 dbSNP
rs1027430616 690 dbSNP
rs1041109178 697 dbSNP
rs1304098436 698 dbSNP
rs952030559 700 dbSNP
rs1390179376 701 dbSNP
rs1159516251 704 dbSNP
rs1301385658 707 dbSNP
rs1431788195 709 dbSNP
rs901186860 710 dbSNP
rs1168937622 711 dbSNP
rs541013228 713 dbSNP
rs1387728131 719 dbSNP
rs999502886 721 dbSNP
rs1032033928 725 dbSNP
rs1433252882 730 dbSNP
rs1363794412 752 dbSNP
rs1452822171 756 dbSNP
rs983770194 758 dbSNP
rs528376253 759 dbSNP
rs1244918630 765 dbSNP
rs960657715 767 dbSNP
rs189831391 770 dbSNP
rs1352629581 771 dbSNP
rs1203278427 773 dbSNP
rs776675829 774 dbSNP
rs762393881 775 dbSNP
rs1411765377 786 dbSNP
rs947768884 788 dbSNP
rs765866602 794 dbSNP
rs926109336 795 dbSNP
rs1351317059 798 dbSNP
rs73404763 801 dbSNP
rs1185512985 803 dbSNP
rs1394143430 807 dbSNP
rs1053782508 814 dbSNP
rs892014349 815 dbSNP
rs1428557261 816 dbSNP
rs1196594326 819 dbSNP
rs944717852 833 dbSNP
rs1365890496 836 dbSNP
rs1452141016 839 dbSNP
rs1040333459 840 dbSNP
rs142265126 841 dbSNP
rs1435727483 843 dbSNP
rs1407550783 844 dbSNP
rs563109682 854 dbSNP
rs767221469 855 dbSNP
rs1344863499 868 dbSNP
rs996208860 869 dbSNP
rs1261867945 872 dbSNP
rs1230269049 876 dbSNP
rs1330003528 878 dbSNP
rs1338165759 883 dbSNP
rs1287951819 885 dbSNP
rs1440222565 887 dbSNP
rs1380055507 888 dbSNP
rs1395064596 895 dbSNP
rs529038195 896 dbSNP
rs1396417955 901 dbSNP
rs1405219843 902 dbSNP
rs11022 903 dbSNP
rs1458358060 904 dbSNP
rs200587308 906 dbSNP
rs386783476 906 dbSNP
rs1060265 907 dbSNP
rs114902006 909 dbSNP
rs547726640 910 dbSNP
rs116060757 922 dbSNP
rs1261367277 925 dbSNP
rs1188642313 927 dbSNP
rs190885244 940 dbSNP
rs901245569 943 dbSNP
rs879945358 945 dbSNP
rs1253011703 948 dbSNP
rs935354356 952 dbSNP
rs1283575578 955 dbSNP
rs1222158717 956 dbSNP
rs1417695104 966 dbSNP
rs1285042748 972 dbSNP
rs117057596 976 dbSNP
rs1181560003 987 dbSNP
rs1430557182 993 dbSNP
rs1381855966 995 dbSNP
rs1334453999 996 dbSNP
rs1437119611 999 dbSNP
rs960631688 1000 dbSNP
rs1316971441 1002 dbSNP
rs1398491869 1003 dbSNP
rs1415482138 1004 dbSNP
rs372744266 1009 dbSNP
rs1444394353 1016 dbSNP
rs778364151 1018 dbSNP
rs1190922006 1033 dbSNP
rs1450583219 1052 dbSNP
rs1242075443 1056 dbSNP
rs1213688927 1058 dbSNP
rs570194556 1061 dbSNP
rs749800807 1062 dbSNP
rs1011450764 1064 dbSNP
rs879264878 1069 dbSNP
rs1221944319 1074 dbSNP
rs1357575211 1088 dbSNP
rs925017421 1093 dbSNP
rs1398200210 1101 dbSNP
rs1389392278 1118 dbSNP
rs905717052 1119 dbSNP
rs936175930 1135 dbSNP
rs1001309274 1136 dbSNP
rs536055791 1140 dbSNP
rs1351182778 1142 dbSNP
rs1346019167 1144 dbSNP
rs988967627 1158 dbSNP
rs913494462 1159 dbSNP
rs1225246848 1163 dbSNP
rs1423543150 1172 dbSNP
rs1363352352 1174 dbSNP
rs1281345550 1180 dbSNP
rs1035869211 1189 dbSNP
rs1430840677 1193 dbSNP
rs1419393495 1200 dbSNP
rs1185358554 1202 dbSNP
rs944945623 1206 dbSNP
rs1479294330 1215 dbSNP
rs1247308948 1223 dbSNP
rs1198821541 1226 dbSNP
rs959811578 1227 dbSNP
rs1040385682 1246 dbSNP
rs1025319552 1251 dbSNP
rs1307918386 1252 dbSNP
rs757183689 1258 dbSNP
rs900508352 1258 dbSNP
rs1272197625 1268 dbSNP
rs952319935 1272 dbSNP
rs144566655 1279 dbSNP
rs1049140956 1280 dbSNP
rs183136741 1282 dbSNP
rs1403830230 1285 dbSNP
rs942876657 1293 dbSNP
rs1430787222 1307 dbSNP
rs1354248195 1311 dbSNP
rs1168796519 1318 dbSNP
rs1005140425 1337 dbSNP
rs1416610650 1340 dbSNP
rs1479785235 1372 dbSNP
rs757907520 1385 dbSNP
rs1426525608 1391 dbSNP
rs1175763870 1394 dbSNP
rs1195539959 1397 dbSNP
rs1479526384 1398 dbSNP
rs1270018547 1400 dbSNP
rs1183248419 1407 dbSNP
rs1490953190 1420 dbSNP
rs976929388 1421 dbSNP
rs1014740082 1426 dbSNP
rs896424894 1442 dbSNP
rs374958141 1450 dbSNP
rs1263718329 1453 dbSNP
rs1432033887 1453 dbSNP
rs1052908466 1454 dbSNP
rs145629787 1455 dbSNP
rs1391554210 1461 dbSNP
rs1372189640 1471 dbSNP
rs946689805 1477 dbSNP
rs1161809355 1481 dbSNP
rs1374394392 1495 dbSNP
rs1460173034 1502 dbSNP
rs1307080905 1506 dbSNP
rs1365929938 1510 dbSNP
rs1360231056 1526 dbSNP
rs1023347644 1530 dbSNP
rs969047851 1531 dbSNP
rs1336717045 1549 dbSNP
rs1000499677 1561 dbSNP
rs1160017688 1563 dbSNP
rs1042981556 1573 dbSNP
rs1406615498 1574 dbSNP
rs770053744 1581 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' uacAGGGUGGGGGUGAGGACa 5'
             |||::||::  |||||| 
Target 5' uucUCCUGCCUUGCCUCCUG- 3'
19 - 38
2
miRNA  3' uacaggguggggguGA-GGACa 5'
                        || |||| 
Target 5' -------------cCUCCCUGg 3'
1 - 9
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000249647.3 | 3UTR | CCUCCCUGGUUCAAGCAAUUCUCCUGCCUUGCCUCCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
256 hsa-miR-4433a-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT088097 SEPT2 septin 2 2 2
MIRT143134 MGRN1 mahogunin ring finger 1 2 2
MIRT153912 NCOA3 nuclear receptor coactivator 3 2 2
MIRT154894 GNAS GNAS complex locus 2 4
MIRT200996 ZNF805 zinc finger protein 805 2 2
MIRT215729 C5ORF51 chromosome 5 open reading frame 51 2 10
MIRT235593 POFUT1 protein O-fucosyltransferase 1 2 2
MIRT263250 SGPL1 sphingosine-1-phosphate lyase 1 2 2
MIRT317951 CDC5L cell division cycle 5 like 2 4
MIRT325572 HIATL1 major facilitator superfamily domain containing 14B 2 4
MIRT354739 LSM3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated 2 2
MIRT444552 UBE2D3 ubiquitin conjugating enzyme E2 D3 2 4
MIRT446978 SUSD5 sushi domain containing 5 2 2
MIRT451036 ZNF610 zinc finger protein 610 2 2
MIRT451596 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT452025 NLRP6 NLR family pyrin domain containing 6 2 2
MIRT452594 CA6 carbonic anhydrase 6 2 2
MIRT452768 TCEA3 transcription elongation factor A3 2 4
MIRT452959 ZNF844 zinc finger protein 844 2 2
MIRT453191 ACSF2 acyl-CoA synthetase family member 2 2 2
MIRT453382 RHD Rh blood group D antigen 2 2
MIRT453685 CEBPD CCAAT/enhancer binding protein delta 2 2
MIRT455272 DDX39B DExD-box helicase 39B 2 8
MIRT455346 BAMBI BMP and activin membrane bound inhibitor 2 2
MIRT456494 SERAC1 serine active site containing 1 2 2
MIRT456585 NID1 nidogen 1 2 2
MIRT456888 DDA1 DET1 and DDB1 associated 1 2 2
MIRT457123 APOLD1 apolipoprotein L domain containing 1 2 2
MIRT457852 ZNF324B zinc finger protein 324B 2 2
MIRT457987 APAF1 apoptotic peptidase activating factor 1 2 2
MIRT459278 APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F 2 2
MIRT459625 SLC25A33 solute carrier family 25 member 33 2 2
MIRT459715 SGK494 uncharacterized serine/threonine-protein kinase SgK494 2 2
MIRT460057 RPL22L1 ribosomal protein L22 like 1 2 2
MIRT460182 UNK unkempt family zinc finger 2 6
MIRT460288 PDE11A phosphodiesterase 11A 2 2
MIRT460841 EGF epidermal growth factor 2 4
MIRT460860 TBC1D19 TBC1 domain family member 19 2 2
MIRT461519 EMC7 ER membrane protein complex subunit 7 2 2
MIRT461729 SLC27A1 solute carrier family 27 member 1 2 4
MIRT461821 SNAP23 synaptosome associated protein 23 2 2
MIRT462066 CCDC77 coiled-coil domain containing 77 2 4
MIRT462084 MSANTD2 Myb/SANT DNA binding domain containing 2 2 2
MIRT462508 MTFMT mitochondrial methionyl-tRNA formyltransferase 2 10
MIRT464239 VCP valosin containing protein 2 2
MIRT465316 TRAF5 TNF receptor associated factor 5 2 2
MIRT466549 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 2
MIRT467128 SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 2 8
MIRT468091 SHCBP1 SHC binding and spindle associated 1 2 2
MIRT469630 RAD21 RAD21 cohesin complex component 2 6
MIRT471097 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT472704 MYBL1 MYB proto-oncogene like 1 2 2
MIRT472830 MTMR10 myotubularin related protein 10 2 2
MIRT472872 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT472895 MTDH metadherin 2 2
MIRT473728 MAPK1 mitogen-activated protein kinase 1 2 2
MIRT473859 MAP2K4 mitogen-activated protein kinase kinase 4 2 2
MIRT474047 LONRF1 LON peptidase N-terminal domain and ring finger 1 2 2
MIRT474297 LAMC1 laminin subunit gamma 1 2 2
MIRT474658 KLF13 Kruppel like factor 13 2 2
MIRT475234 IKZF3 IKAROS family zinc finger 3 2 2
MIRT475500 HSP90B1 heat shock protein 90 beta family member 1 2 2
MIRT475742 HERPUD1 homocysteine inducible ER protein with ubiquitin like domain 1 2 4
MIRT475793 HDGF heparin binding growth factor 2 2
MIRT477254 ERGIC2 ERGIC and golgi 2 2 2
MIRT478228 DDX52 DExD-box helicase 52 2 2
MIRT478393 DCTN5 dynactin subunit 5 2 2
MIRT478754 CS citrate synthase 2 2
MIRT478827 CRKL CRK like proto-oncogene, adaptor protein 2 4
MIRT480234 C9orf41 carnosine N-methyltransferase 1 2 2
MIRT480597 BTRC beta-transducin repeat containing E3 ubiquitin protein ligase 2 2
MIRT484121 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT484689 PACSIN1 protein kinase C and casein kinase substrate in neurons 1 2 2
MIRT486331 C11orf54 chromosome 11 open reading frame 54 2 4
MIRT488599 FAM3C family with sequence similarity 3 member C 2 8
MIRT488833 MRRF mitochondrial ribosome recycling factor 2 2
MIRT492523 RAB15 RAB15, member RAS oncogene family 2 4
MIRT493632 HIC2 HIC ZBTB transcriptional repressor 2 2 2
MIRT500026 ABCF2 ATP binding cassette subfamily F member 2 2 8
MIRT501075 SMAD7 SMAD family member 7 2 8
MIRT503094 BTG2 BTG anti-proliferation factor 2 2 4
MIRT503336 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT505465 STMN1 stathmin 1 2 4
MIRT505726 SERTAD3 SERTA domain containing 3 2 4
MIRT509333 MS4A4A membrane spanning 4-domains A4A 2 2
MIRT509978 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 4
MIRT513068 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT513446 EMP1 epithelial membrane protein 1 2 6
MIRT513736 PSD3 pleckstrin and Sec7 domain containing 3 2 4
MIRT513996 CENPQ centromere protein Q 2 4
MIRT516538 MIXL1 Mix paired-like homeobox 2 2
MIRT517606 SAV1 salvador family WW domain containing protein 1 2 2
MIRT518064 CEP89 centrosomal protein 89 2 2
MIRT518119 RNMTL1 mitochondrial rRNA methyltransferase 3 2 2
MIRT518325 WDR92 WD repeat domain 92 2 2
MIRT519048 ABCB11 ATP binding cassette subfamily B member 11 2 2
MIRT520972 SPPL2A signal peptide peptidase like 2A 2 4
MIRT521359 RPL35A ribosomal protein L35a 2 2
MIRT523359 GTF3C6 general transcription factor IIIC subunit 6 2 2
MIRT523801 FAM63A MINDY lysine 48 deubiquitinase 1 2 2
MIRT524622 C7orf73 short transmembrane mitochondrial protein 1 2 2
MIRT525550 PHB2 prohibitin 2 2 4
MIRT529709 ZBTB49 zinc finger and BTB domain containing 49 2 2
MIRT531605 PLEKHA6 pleckstrin homology domain containing A6 2 2
MIRT532387 UMPS uridine monophosphate synthetase 2 2
MIRT534468 SCD stearoyl-CoA desaturase 2 4
MIRT537546 ETNK1 ethanolamine kinase 1 2 2
MIRT541619 C11orf31 selenoprotein H 2 2
MIRT548380 ENPP5 ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative) 2 4
MIRT549523 HDDC2 HD domain containing 2 2 2
MIRT549774 SOD2 superoxide dismutase 2 2 2
MIRT550578 SLC2A5 solute carrier family 2 member 5 2 2
MIRT551498 CENPN centromere protein N 2 4
MIRT552301 ITGA3 integrin subunit alpha 3 2 2
MIRT555400 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT556399 LUC7L LUC7 like 2 2
MIRT557047 HOXB3 homeobox B3 2 2
MIRT558072 ERO1L endoplasmic reticulum oxidoreductase 1 alpha 1 2
MIRT559659 AHCYL2 adenosylhomocysteinase like 2 2 2
MIRT561239 ZNF354B zinc finger protein 354B 2 2
MIRT566899 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT568786 FAM120B family with sequence similarity 120B 2 2
MIRT574014 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT574885 Dnajc6 DnaJ heat shock protein family (Hsp40) member C6 2 2
MIRT575243 Serping1 serine (or cysteine) peptidase inhibitor, clade G, member 1 2 2
MIRT576194 Vsig2 V-set and immunoglobulin domain containing 2 2 2
MIRT576309 Acbd7 acyl-Coenzyme A binding domain containing 7 2 2
MIRT576484 Lhx4 LIM homeobox protein 4 2 3
MIRT576646 Mill2 MHC I like leukocyte 2 1 1
MIRT576708 Kras Kirsten rat sarcoma viral oncogene homolog 2 2
MIRT576855 Socs6 suppressor of cytokine signaling 6 2 2
MIRT576950 Aldoa aldolase A, fructose-bisphosphate 2 2
MIRT617133 ZNF556 zinc finger protein 556 2 4
MIRT617928 ZNF783 zinc finger family member 783 2 2
MIRT618981 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT621100 SIX3 SIX homeobox 3 2 2
MIRT624537 BROX BRO1 domain and CAAX motif containing 2 2
MIRT625663 C2orf48 chromosome 2 open reading frame 48 2 2
MIRT627059 DCTN6 dynactin subunit 6 2 2
MIRT628319 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT630859 ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 2 2
MIRT632295 TMEM65 transmembrane protein 65 2 2
MIRT634115 ZNF207 zinc finger protein 207 2 2
MIRT634736 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT635655 NDST3 N-deacetylase and N-sulfotransferase 3 2 2
MIRT635772 PDCL3 phosducin like 3 2 2
MIRT635911 LILRA2 leukocyte immunoglobulin like receptor A2 2 2
MIRT636365 OGFRL1 opioid growth factor receptor like 1 2 4
MIRT637251 GLRX2 glutaredoxin 2 2 2
MIRT638705 FZD4 frizzled class receptor 4 2 2
MIRT639640 PREX2 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 2 2
MIRT639676 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT642267 SMIM17 small integral membrane protein 17 2 2
MIRT642372 ZNF581 zinc finger protein 581 2 2
MIRT643545 SLC25A17 solute carrier family 25 member 17 2 2
MIRT647994 PDE12 phosphodiesterase 12 2 2
MIRT649094 NOM1 nucleolar protein with MIF4G domain 1 2 2
MIRT650993 ZNF770 zinc finger protein 770 2 2
MIRT651956 UBE2N ubiquitin conjugating enzyme E2 N 2 2
MIRT652977 SUN2 Sad1 and UNC84 domain containing 2 2 2
MIRT654389 RBM12B RNA binding motif protein 12B 2 2
MIRT655637 OLFML2A olfactomedin like 2A 2 2
MIRT655729 NRXN3 neurexin 3 2 2
MIRT658171 FCHSD1 FCH and double SH3 domains 1 2 2
MIRT660937 ACOX1 acyl-CoA oxidase 1 2 2
MIRT662112 CERKL ceramide kinase like 2 2
MIRT662302 MPV17L MPV17 mitochondrial inner membrane protein like 2 2
MIRT662993 TMEM59 transmembrane protein 59 2 2
MIRT663071 SFR1 SWI5 dependent homologous recombination repair protein 1 2 2
MIRT663704 ABHD17B abhydrolase domain containing 17B 2 2
MIRT663864 MUC20 mucin 20, cell surface associated 2 2
MIRT665185 HAUS5 HAUS augmin like complex subunit 5 2 4
MIRT665402 WEE1 WEE1 G2 checkpoint kinase 2 2
MIRT665688 TNPO3 transportin 3 2 2
MIRT665795 TMEM170A transmembrane protein 170A 2 2
MIRT665847 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT666999 PDPN podoplanin 2 2
MIRT667598 LIPC lipase C, hepatic type 2 2
MIRT668576 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 4
MIRT670960 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT671187 ZNF891 zinc finger protein 891 2 2
MIRT671739 ZNF451 zinc finger protein 451 2 2
MIRT672745 ZNF585B zinc finger protein 585B 2 4
MIRT673446 ZNF583 zinc finger protein 583 2 2
MIRT679843 GPR75 G protein-coupled receptor 75 2 2
MIRT680556 ZNF584 zinc finger protein 584 2 2
MIRT680661 C1orf210 chromosome 1 open reading frame 210 2 2
MIRT681285 RFC2 replication factor C subunit 2 2 2
MIRT683264 ZNF329 zinc finger protein 329 2 2
MIRT684519 C1orf174 chromosome 1 open reading frame 174 2 2
MIRT685065 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685157 DTWD2 DTW domain containing 2 2 2
MIRT685168 ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit 2 2
MIRT685470 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT686001 NEK4 NIMA related kinase 4 2 2
MIRT687027 RNF24 ring finger protein 24 2 2
MIRT687543 MOB1B MOB kinase activator 1B 2 2
MIRT687592 MANEAL mannosidase endo-alpha like 2 2
MIRT687753 KIAA1328 KIAA1328 2 2
MIRT688050 GLUL glutamate-ammonia ligase 2 2
MIRT688374 ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 2 2
MIRT688802 CBFA2T3 CBFA2/RUNX1 translocation partner 3 2 2
MIRT688957 ATXN3 ataxin 3 2 2
MIRT689281 C5AR2 complement component 5a receptor 2 2 2
MIRT689988 NNMT nicotinamide N-methyltransferase 2 2
MIRT689997 MMP17 matrix metallopeptidase 17 2 2
MIRT690014 LUZP2 leucine zipper protein 2 2 2
MIRT690161 ELP3 elongator acetyltransferase complex subunit 3 2 2
MIRT690379 ZSWIM7 zinc finger SWIM-type containing 7 2 2
MIRT690563 MICA MHC class I polypeptide-related sequence A 2 2
MIRT691891 EVC EvC ciliary complex subunit 1 2 2
MIRT693107 SCNM1 sodium channel modifier 1 2 2
MIRT693832 ZFP64 ZFP64 zinc finger protein 2 2
MIRT694105 ZNF446 zinc finger protein 446 2 2
MIRT694179 ZNF486 zinc finger protein 486 2 2
MIRT694475 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT694998 GGA2 golgi associated, gamma adaptin ear containing, ARF binding protein 2 2 2
MIRT695031 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT695163 TCTN2 tectonic family member 2 2 2
MIRT695525 SLC25A34 solute carrier family 25 member 34 2 2
MIRT696067 ZNF264 zinc finger protein 264 2 2
MIRT696616 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT696661 AGXT2 alanine--glyoxylate aminotransferase 2 2 2
MIRT696705 PNPO pyridoxamine 5'-phosphate oxidase 2 2
MIRT697173 INMT indolethylamine N-methyltransferase 2 2
MIRT697303 ZNF652 zinc finger protein 652 2 2
MIRT697491 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT698657 TERF2 telomeric repeat binding factor 2 2 2
MIRT699042 SOAT1 sterol O-acyltransferase 1 2 2
MIRT699185 SLX4IP SLX4 interacting protein 2 2
MIRT699598 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 2
MIRT700150 RNF115 ring finger protein 115 2 2
MIRT700720 PNO1 partner of NOB1 homolog 2 2
MIRT700870 PER2 period circadian clock 2 2 2
MIRT700912 PDXK pyridoxal kinase 2 2
MIRT701095 PAPOLG poly(A) polymerase gamma 2 2
MIRT701194 OTUD3 OTU deubiquitinase 3 2 2
MIRT702203 LPP LIM domain containing preferred translocation partner in lipoma 2 2
MIRT702272 LHX4 LIM homeobox 4 2 3
MIRT703125 GPRC5A G protein-coupled receptor class C group 5 member A 2 2
MIRT703252 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT703262 GNL3L G protein nucleolar 3 like 2 2
MIRT703440 FYTTD1 forty-two-three domain containing 1 2 2
MIRT704321 DCUN1D5 defective in cullin neddylation 1 domain containing 5 2 2
MIRT704393 CTSS cathepsin S 2 2
MIRT704483 CPT1A carnitine palmitoyltransferase 1A 2 2
MIRT704880 CCSER2 coiled-coil serine rich protein 2 2 2
MIRT704926 CCDC36 coiled-coil domain containing 36 2 2
MIRT705175 BZW1 basic leucine zipper and W2 domains 1 2 2
MIRT706561 EIF2AK2 eukaryotic translation initiation factor 2 alpha kinase 2 2 2
MIRT707048 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT711497 PGD phosphogluconate dehydrogenase 2 2
MIRT716644 EPGN epithelial mitogen 2 2
MIRT720083 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT722288 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT725468 GRAP2 GRB2-related adaptor protein 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4433a Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-4433a Paclitaxel 36314 NSC125973 approved resistant cell line (W1)
hsa-mir-4433a Vincristine 5978 approved resistant cell line (W1)
hsa-mir-4433a Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-4433a-3p Platinum 23939 sensitive High Ovarian Cancer tissue
hsa-miR-4433a-3p Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant High Pancreatic Cancer cell line (BxPC-3)
hsa-miR-4433a-3p Paclitaxel 36314 NSC125973 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-4433a-3p Imatinib 5291 NSC743414 approved sensitive High Chronic Myelogenous Leukemia tissue
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (A2780CIS)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (CAL-27) (mitochondrial RNA)
hsa-miR-4433a-3p Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant cell line (CP20)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant cell line (CIS)
hsa-miR-4433a-3p Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4433a-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-4433a-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)

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