pre-miRNA Information
pre-miRNA hsa-mir-4747   
Genomic Coordinates chr19: 4932687 - 4932740
Description Homo sapiens miR-4747 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4747-5p
Sequence 1| AGGGAAGGAGGCUUGGUCUUAG |22
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs560927363 4 dbSNP
rs1471226927 10 dbSNP
rs763137545 12 dbSNP
rs767337154 15 dbSNP
rs775298039 16 dbSNP
rs760472311 19 dbSNP
rs1207950315 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol PHF5A   
Synonyms INI, Rds3, SAP14b, SF3B7, SF3b14b, bK223H9.2
Description PHD finger protein 5A
Transcript NM_032758   
Expression
Putative miRNA Targets on PHF5A
3'UTR of PHF5A
(miRNA target sites are highlighted)
>PHF5A|NM_032758|3'UTR
   1 TTGGTGGGTGGCCCCTTCCTCCCCCCAACATCAGTCTGCTGCAGCTGCCAGAAAACATGCCTACTACTACCAGCAGAAAG
  81 GGAGCAGAGCCCAGAGCATCACCAGGAGTGCCTGCTAGTGTACTGGCAGCTTGCCACCCCCTCCTCTCCCTTCACCCAGA
 161 CACGTGGTAGGGATGGAAAAGGATTCTTCACAGAGCACTCTGGCACACCATATCGGAGAAAACTTGATAGATTAGTTAAT
 241 GGTTTTTCTTGAATTCGAGAAGCAAAGATCTGTTCTCCATATTGGTATGTTCTCCCTCAACCAAGATCTTCTAAAAAGAA
 321 ATAATATTTTAGTCTTCTGCTTGAGGAACTGACTGTGAAGCGACGCCCAGTGAAAAACATGTTCTTGCAGCAGCTCTGGT
 401 GGCAGCTGTCCTTGAGGAACCTTTGGTGTGTGGTGGGAAGCTATCAGAACAAGAAATGTAGGCATTTCCCGTTTTTTTTG
 481 GGGGGGGGGTGGGGGGGCAGGGCTCTGCCCTCTTGAAAGGCATTTACTTGTTTAACACTTGTCCAGCTACAGTGGGGTAC
 561 AGTAGCTGGCTATTCACAGGCATCATCATAGCCCACTAGTCTCATATTATTTTCCTTTTGAGAAATTGGAAACTCTTTCT
 641 GTTGCTATTATATTAATAAAGTTGGTGTTTATTTTCTGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
 721 A
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gauucugguUCGGAGGAAGGGa 5'
                   :||| ||||||: 
Target 5' ttggtgggtGGCC-CCTTCCTc 3'
1 - 21 132.00 -15.70
2
miRNA  3' gauucUGGU-UCGGAGGA-AGGGa 5'
               :|||   |||||| |||| 
Target 5' agcttGCCACCCCCTCCTCTCCCt 3'
128 - 151 125.00 -20.60
3
miRNA  3' gaUUCUGGUUCGGAGGAAGGGa 5'
            | |:  |||  |:|||| | 
Target 5' ggATGGAAAAGGATTCTTCACa 3'
171 - 192 108.00 -8.72
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN32063182 3 COSMIC
COSN30527245 16 COSMIC
COSN30116169 36 COSMIC
COSN31558272 48 COSMIC
COSN30153129 51 COSMIC
COSN26988860 54 COSMIC
COSN31542630 64 COSMIC
COSN30144642 115 COSMIC
COSN18744257 122 COSMIC
COSN28679702 129 COSMIC
COSN30466202 153 COSMIC
COSN30109281 176 COSMIC
COSN30514511 204 COSMIC
COSN20670209 343 COSMIC
COSN27307998 472 COSMIC
rs5758364 490 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs574375738 5 dbSNP
rs779356066 6 dbSNP
rs757348271 11 dbSNP
rs753836588 12 dbSNP
rs1369794493 14 dbSNP
rs1420842877 15 dbSNP
rs764412268 18 dbSNP
rs764027890 20 dbSNP
rs375345370 21 dbSNP
rs752594319 22 dbSNP
rs201597741 25 dbSNP
rs768434018 27 dbSNP
rs372071367 29 dbSNP
rs1202684012 30 dbSNP
rs964081097 44 dbSNP
rs1302870496 49 dbSNP
rs1456369912 51 dbSNP
rs1016996065 56 dbSNP
rs984064430 64 dbSNP
rs1004588232 67 dbSNP
rs1239779229 71 dbSNP
rs886147322 73 dbSNP
rs1288448646 75 dbSNP
rs951428592 87 dbSNP
rs1048820730 93 dbSNP
rs995048301 94 dbSNP
rs546374204 102 dbSNP
rs577362560 111 dbSNP
rs765844652 112 dbSNP
rs907154307 127 dbSNP
rs1054988789 130 dbSNP
rs1419157772 133 dbSNP
rs1042939 137 dbSNP
rs1383023111 138 dbSNP
rs1042940 141 dbSNP
rs1393056346 143 dbSNP
rs559200755 148 dbSNP
rs1163386293 149 dbSNP
rs1366557846 154 dbSNP
rs927898920 162 dbSNP
rs1296965119 163 dbSNP
rs1373171714 164 dbSNP
rs1012785001 166 dbSNP
rs1046109929 169 dbSNP
rs534456060 182 dbSNP
rs1432884514 186 dbSNP
rs762580395 200 dbSNP
rs894211992 206 dbSNP
rs1323279050 207 dbSNP
rs1377530822 208 dbSNP
rs1042943 209 dbSNP
rs1042944 210 dbSNP
rs370458271 212 dbSNP
rs913285059 214 dbSNP
rs1480887760 218 dbSNP
rs1362406741 221 dbSNP
rs1042947 223 dbSNP
rs149294656 233 dbSNP
rs1257360276 234 dbSNP
rs1386639276 237 dbSNP
rs1186633102 242 dbSNP
rs1042952 256 dbSNP
rs1462918118 257 dbSNP
rs191483313 259 dbSNP
rs202639 265 dbSNP
rs922087941 268 dbSNP
rs974923873 272 dbSNP
rs1259233342 277 dbSNP
rs966260902 279 dbSNP
rs1019164719 281 dbSNP
rs1294530054 284 dbSNP
rs1042958 285 dbSNP
rs4822029 286 dbSNP
rs922873698 287 dbSNP
rs1200428008 290 dbSNP
rs1349763429 294 dbSNP
rs950424899 296 dbSNP
rs765030725 303 dbSNP
rs1027761031 327 dbSNP
rs1203685819 330 dbSNP
rs1474201888 332 dbSNP
rs1185183104 334 dbSNP
rs1258738584 336 dbSNP
rs13766 339 dbSNP
rs975531805 340 dbSNP
rs569192944 343 dbSNP
rs894936274 348 dbSNP
rs1033504926 349 dbSNP
rs557479641 351 dbSNP
rs57259696 351 dbSNP
rs1469366298 355 dbSNP
rs17002469 361 dbSNP
rs186918522 362 dbSNP
rs183695146 364 dbSNP
rs951420876 365 dbSNP
rs906408572 368 dbSNP
rs1281315423 369 dbSNP
rs1025643536 371 dbSNP
rs1223633091 382 dbSNP
rs1280088540 384 dbSNP
rs1444973625 387 dbSNP
rs982556503 388 dbSNP
rs535977723 390 dbSNP
rs1488823372 391 dbSNP
rs192793191 393 dbSNP
rs1267407354 398 dbSNP
rs946009443 401 dbSNP
rs891781644 402 dbSNP
rs1173270163 405 dbSNP
rs1381857898 409 dbSNP
rs1382979588 410 dbSNP
rs1054889689 413 dbSNP
rs936086315 414 dbSNP
rs922055533 419 dbSNP
rs974848757 436 dbSNP
rs1345954894 450 dbSNP
rs1042972 453 dbSNP
rs944893073 456 dbSNP
rs1301023820 458 dbSNP
rs1454586989 468 dbSNP
rs1405463705 471 dbSNP
rs1417815836 471 dbSNP
rs76744137 472 dbSNP
rs1347922908 477 dbSNP
rs1163366305 478 dbSNP
rs1425723937 478 dbSNP
rs1491214661 479 dbSNP
rs9423 479 dbSNP
rs1491254821 480 dbSNP
rs1491265943 480 dbSNP
rs780059894 480 dbSNP
rs865871235 480 dbSNP
rs1364724135 481 dbSNP
rs1491131579 481 dbSNP
rs1419374869 482 dbSNP
rs1199909329 483 dbSNP
rs1187903615 484 dbSNP
rs1243292991 485 dbSNP
rs958535984 485 dbSNP
rs1292672834 486 dbSNP
rs1359166805 486 dbSNP
rs1203964572 487 dbSNP
rs1446074465 487 dbSNP
rs1181976830 488 dbSNP
rs1384773365 488 dbSNP
rs1473012873 489 dbSNP
rs1164727797 490 dbSNP
rs1199738083 490 dbSNP
rs5758364 490 dbSNP
rs1286291602 491 dbSNP
rs1383007435 491 dbSNP
rs1259165568 496 dbSNP
rs1258875995 498 dbSNP
rs1276630459 498 dbSNP
rs751852522 498 dbSNP
rs1340659153 499 dbSNP
rs1371103205 499 dbSNP
rs35777353 503 dbSNP
rs1206699687 504 dbSNP
rs559991943 506 dbSNP
rs1272518794 507 dbSNP
rs1171292560 509 dbSNP
rs1231362827 511 dbSNP
rs999945259 518 dbSNP
rs1337126564 529 dbSNP
rs1335447425 530 dbSNP
rs1402522682 534 dbSNP
rs1397396210 548 dbSNP
rs113800666 551 dbSNP
rs1336622689 553 dbSNP
rs902963427 561 dbSNP
rs1253644564 570 dbSNP
rs1284857178 573 dbSNP
rs1320563713 575 dbSNP
rs769031354 577 dbSNP
rs774216439 585 dbSNP
rs1226706589 588 dbSNP
rs1041368420 590 dbSNP
rs1259479421 590 dbSNP
rs1042993 595 dbSNP
rs998280365 596 dbSNP
rs1394423182 599 dbSNP
rs1324232008 601 dbSNP
rs1265288840 605 dbSNP
rs1463347035 608 dbSNP
rs1175151617 619 dbSNP
rs1419113172 620 dbSNP
rs951055697 634 dbSNP
rs1156453278 639 dbSNP
rs1467325038 639 dbSNP
rs1383727017 641 dbSNP
rs1399807512 647 dbSNP
rs1299140916 650 dbSNP
rs1027319200 652 dbSNP
rs1342976246 656 dbSNP
rs973099143 671 dbSNP
rs1300742505 678 dbSNP
rs1312842237 679 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gauucugGUUCG-GAGGAAGGGa 5'
                 ||| | || |||||| 
Target 5' cucacugCAACCUCUACUUCCCa 3'
8 - 30
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000216252.3 | 3UTR | AUCUCAGCUCACUGCAACCUCUACUUCCCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
215 hsa-miR-4747-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT061689 BTG2 BTG anti-proliferation factor 2 2 2
MIRT062834 BCL7A BCL tumor suppressor 7A 2 2
MIRT079371 CCDC137 coiled-coil domain containing 137 2 2
MIRT081190 MIDN midnolin 2 4
MIRT081724 ZNF507 zinc finger protein 507 2 2
MIRT110565 ZMYND11 zinc finger MYND-type containing 11 2 2
MIRT133724 SKI SKI proto-oncogene 2 4
MIRT146689 MINK1 misshapen like kinase 1 2 2
MIRT150676 SLC27A1 solute carrier family 27 member 1 2 2
MIRT159196 NRBP1 nuclear receptor binding protein 1 2 2
MIRT180865 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT190659 PABPN1 poly(A) binding protein nuclear 1 2 2
MIRT196111 MPRIP myosin phosphatase Rho interacting protein 2 2
MIRT232390 SP1 Sp1 transcription factor 2 2
MIRT331070 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 4
MIRT338632 SHMT2 serine hydroxymethyltransferase 2 2 2
MIRT407441 CTDSP1 CTD small phosphatase 1 2 2
MIRT444276 NKX6-1 NK6 homeobox 1 2 2
MIRT444834 PDE6D phosphodiesterase 6D 2 2
MIRT445452 EXT1 exostosin glycosyltransferase 1 2 2
MIRT445644 NPY4R neuropeptide Y receptor Y4 2 2
MIRT446157 RPL12 ribosomal protein L12 2 2
MIRT446608 HIP1 huntingtin interacting protein 1 2 2
MIRT447108 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT449314 MRO maestro 2 2
MIRT450305 DRAXIN dorsal inhibitory axon guidance protein 2 2
MIRT451245 ZNF444 zinc finger protein 444 2 2
MIRT451714 OLR1 oxidized low density lipoprotein receptor 1 2 2
MIRT451908 ILK integrin linked kinase 2 2
MIRT452183 KIAA1456 KIAA1456 2 2
MIRT452610 REPIN1 replication initiator 1 2 2
MIRT453422 GLG1 golgi glycoprotein 1 2 2
MIRT454006 ALKBH5 alkB homolog 5, RNA demethylase 2 2
MIRT455072 ARHGAP39 Rho GTPase activating protein 39 2 2
MIRT455319 TTLL9 tubulin tyrosine ligase like 9 2 2
MIRT455357 KDM5C lysine demethylase 5C 2 2
MIRT455589 TAF12 TATA-box binding protein associated factor 12 2 2
MIRT455711 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT455860 TMEM254 transmembrane protein 254 2 2
MIRT455919 RAPGEF1 Rap guanine nucleotide exchange factor 1 2 2
MIRT455946 CYP4A22 cytochrome P450 family 4 subfamily A member 22 2 2
MIRT456935 LRP10 LDL receptor related protein 10 2 2
MIRT457223 AP3D1 adaptor related protein complex 3 delta 1 subunit 2 2
MIRT457431 NOL10 nucleolar protein 10 2 2
MIRT457470 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457907 ZNF212 zinc finger protein 212 2 2
MIRT458046 TSEN54 tRNA splicing endonuclease subunit 54 2 2
MIRT458073 RNLS renalase, FAD dependent amine oxidase 2 2
MIRT458234 NXPH3 neurexophilin 3 2 2
MIRT458307 TNFAIP8L3 TNF alpha induced protein 8 like 3 2 2
MIRT458378 ITM2C integral membrane protein 2C 2 2
MIRT458967 ZNF436 zinc finger protein 436 2 2
MIRT459099 CYP4A11 cytochrome P450 family 4 subfamily A member 11 2 2
MIRT459446 TMEM37 transmembrane protein 37 2 2
MIRT459671 VPS37C VPS37C, ESCRT-I subunit 2 2
MIRT460727 ASXL3 additional sex combs like 3, transcriptional regulator 2 2
MIRT460744 SRP14 signal recognition particle 14 2 2
MIRT461531 C14orf1 ergosterol biosynthesis 28 homolog 2 2
MIRT461752 DDX11 DEAD/H-box helicase 11 2 2
MIRT461837 F2RL3 F2R like thrombin or trypsin receptor 3 2 2
MIRT462019 RIF1 replication timing regulatory factor 1 2 2
MIRT462631 PHF5A PHD finger protein 5A 2 2
MIRT462772 ZNF8 zinc finger protein 8 2 2
MIRT463032 ZNF689 zinc finger protein 689 2 2
MIRT463886 WNT7B Wnt family member 7B 2 2
MIRT463995 WDTC1 WD and tetratricopeptide repeats 1 2 2
MIRT464371 URM1 ubiquitin related modifier 1 2 2
MIRT465342 TPM3 tropomyosin 3 2 4
MIRT465515 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT465602 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT465697 TNPO2 transportin 2 2 10
MIRT466988 SSRP1 structure specific recognition protein 1 2 4
MIRT467630 SLC7A5 solute carrier family 7 member 5 2 2
MIRT468132 SH3PXD2A SH3 and PX domains 2A 2 2
MIRT468322 SF3B3 splicing factor 3b subunit 3 2 2
MIRT468502 SESN2 sestrin 2 2 2
MIRT468881 RREB1 ras responsive element binding protein 1 2 2
MIRT469322 RGP1 RGP1 homolog, RAB6A GEF complex partner 1 2 2
MIRT469562 RARA retinoic acid receptor alpha 2 2
MIRT469898 PTRF caveolae associated protein 1 2 2
MIRT470045 PTGFRN prostaglandin F2 receptor inhibitor 2 2
MIRT470068 PTGES2 prostaglandin E synthase 2 2 2
MIRT470238 PRRC2A proline rich coiled-coil 2A 2 2
MIRT470390 PPP1R16B protein phosphatase 1 regulatory subunit 16B 2 2
MIRT470500 PPP1R11 protein phosphatase 1 regulatory inhibitor subunit 11 2 2
MIRT470689 POLR2D RNA polymerase II subunit D 2 2
MIRT470704 POGK pogo transposable element derived with KRAB domain 2 2
MIRT471083 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT472482 NACC2 NACC family member 2 2 2
MIRT473583 MAT2A methionine adenosyltransferase 2A 2 2
MIRT474554 KLHDC3 kelch domain containing 3 2 2
MIRT474651 KLF13 Kruppel like factor 13 2 2
MIRT474843 KHSRP KH-type splicing regulatory protein 2 2
MIRT474934 KCTD15 potassium channel tetramerization domain containing 15 2 2
MIRT475573 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 2 2
MIRT476045 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT476080 GRB2 growth factor receptor bound protein 2 2 2
MIRT476440 GBA2 glucosylceramidase beta 2 2 2
MIRT476764 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT478785 CRTC2 CREB regulated transcription coactivator 2 2 2
MIRT479287 CHAC1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 2 2
MIRT479505 CDH6 cadherin 6 2 2
MIRT479732 CCND1 cyclin D1 2 6
MIRT480352 C5orf24 chromosome 5 open reading frame 24 2 2
MIRT480407 C19orf47 chromosome 19 open reading frame 47 2 2
MIRT480859 BHLHB9 basic helix-loop-helix family member b9 2 2
MIRT481445 ARRB2 arrestin beta 2 2 2
MIRT481732 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT481824 AP2M1 adaptor related protein complex 2 mu 1 subunit 2 2
MIRT482566 ABHD2 abhydrolase domain containing 2 2 2
MIRT482607 ABHD14B abhydrolase domain containing 14B 2 2
MIRT483144 SYCE1L synaptonemal complex central element protein 1 like 2 2
MIRT483214 APOA1 apolipoprotein A1 2 6
MIRT483878 TGIF1 TGFB induced factor homeobox 1 2 2
MIRT483917 SPSB1 splA/ryanodine receptor domain and SOCS box containing 1 2 2
MIRT483939 LENG8 leukocyte receptor cluster member 8 2 4
MIRT484420 SNX19 sorting nexin 19 2 2
MIRT484489 SLC9A1 solute carrier family 9 member A1 2 2
MIRT484612 SIX3 SIX homeobox 3 2 6
MIRT484705 RNF11 ring finger protein 11 2 2
MIRT485107 SHISA6 shisa family member 6 2 2
MIRT485354 MYO1C myosin IC 2 4
MIRT485609 FOSL1 FOS like 1, AP-1 transcription factor subunit 2 4
MIRT487311 GLTSCR1 BRD4 interacting chromatin remodeling complex associated protein 2 2
MIRT487417 CACNB1 calcium voltage-gated channel auxiliary subunit beta 1 2 2
MIRT487695 CDK14 cyclin dependent kinase 14 2 2
MIRT487791 GPR20 G protein-coupled receptor 20 2 4
MIRT488042 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT488058 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT488237 DNLZ DNL-type zinc finger 2 4
MIRT488764 FXYD1 FXYD domain containing ion transport regulator 1 2 2
MIRT489401 TUBB2A tubulin beta 2A class IIa 2 2
MIRT489777 GRINA glutamate ionotropic receptor NMDA type subunit associated protein 1 2 2
MIRT490099 FN3K fructosamine 3 kinase 2 2
MIRT490290 ISL2 ISL LIM homeobox 2 2 2
MIRT490378 LHFPL3 LHFPL tetraspan subfamily member 3 2 2
MIRT491329 GFER growth factor, augmenter of liver regeneration 2 2
MIRT491435 MSX2 msh homeobox 2 2 2
MIRT491769 ZNF385A zinc finger protein 385A 2 2
MIRT491922 WNK2 WNK lysine deficient protein kinase 2 2 2
MIRT491983 UNK unkempt family zinc finger 2 2
MIRT492228 SLC48A1 solute carrier family 48 member 1 2 2
MIRT492404 SDK1 sidekick cell adhesion molecule 1 2 2
MIRT492767 PDGFB platelet derived growth factor subunit B 2 2
MIRT492966 NCS1 neuronal calcium sensor 1 2 2
MIRT493295 LLGL2 LLGL2, scribble cell polarity complex component 2 2
MIRT493650 HDLBP high density lipoprotein binding protein 2 2
MIRT493913 FAM127B retrotransposon Gag like 8A 2 4
MIRT495601 NKX2-5 NK2 homeobox 5 2 2
MIRT496875 AHCYL2 adenosylhomocysteinase like 2 2 2
MIRT498514 MYH14 myosin heavy chain 14 2 2
MIRT499178 RBPJL recombination signal binding protein for immunoglobulin kappa J region like 2 2
MIRT502143 KIF5B kinesin family member 5B 2 8
MIRT502692 CSNK1G1 casein kinase 1 gamma 1 2 4
MIRT508460 HOXB6 homeobox B6 2 4
MIRT510430 ZNF207 zinc finger protein 207 2 6
MIRT511837 GPATCH8 G-patch domain containing 8 2 4
MIRT512368 CPM carboxypeptidase M 2 2
MIRT512506 BTBD19 BTB domain containing 19 2 2
MIRT513065 ANKRD45 ankyrin repeat domain 45 2 2
MIRT513267 SCUBE1 signal peptide, CUB domain and EGF like domain containing 1 2 4
MIRT513575 EVX1 even-skipped homeobox 1 2 2
MIRT515051 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT515790 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT521657 PRKD3 protein kinase D3 2 2
MIRT522679 LUZP1 leucine zipper protein 1 2 6
MIRT528845 RAB32 RAB32, member RAS oncogene family 2 2
MIRT533569 TOR1AIP1 torsin 1A interacting protein 1 2 2
MIRT543738 DHCR7 7-dehydrocholesterol reductase 2 2
MIRT544295 TSPYL1 TSPY like 1 2 2
MIRT544857 MYH2 myosin heavy chain 2 2 4
MIRT557323 HIATL1 major facilitator superfamily domain containing 14B 2 4
MIRT560522 TMEM98 transmembrane protein 98 2 2
MIRT561565 SLC6A9 solute carrier family 6 member 9 2 2
MIRT562374 ERI2 ERI1 exoribonuclease family member 2 2 2
MIRT565780 SEMA6D semaphorin 6D 2 2
MIRT569548 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT569944 PRRT2 proline rich transmembrane protein 2 2 2
MIRT570016 COL1A2 collagen type I alpha 2 chain 2 2
MIRT572163 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT572322 HSPB6 heat shock protein family B (small) member 6 2 2
MIRT573495 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT574139 MARVELD1 MARVEL domain containing 1 2 2
MIRT609449 CCDC149 coiled-coil domain containing 149 2 2
MIRT610619 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT623355 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT629854 ACOX1 acyl-CoA oxidase 1 2 2
MIRT630516 CDC73 cell division cycle 73 2 2
MIRT632535 PSMB2 proteasome subunit beta 2 2 2
MIRT633975 SLC35E2 solute carrier family 35 member E2 2 2
MIRT636408 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT641722 LTBR lymphotoxin beta receptor 2 2
MIRT642661 RGS6 regulator of G protein signaling 6 2 2
MIRT649649 MAST3 microtubule associated serine/threonine kinase 3 2 2
MIRT650367 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT651355 ZBTB40 zinc finger and BTB domain containing 40 2 2
MIRT664840 HUS1 HUS1 checkpoint clamp component 2 2
MIRT667322 MYH9 myosin heavy chain 9 2 2
MIRT670680 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT674922 TRPM6 transient receptor potential cation channel subfamily M member 6 2 2
MIRT675919 CYP51A1 cytochrome P450 family 51 subfamily A member 1 2 2
MIRT676493 GJD3 gap junction protein delta 3 2 2
MIRT680162 ZDHHC20 zinc finger DHHC-type containing 20 2 2
MIRT688008 GSN gelsolin 2 2
MIRT688997 ATP6AP1 ATPase H+ transporting accessory protein 1 2 2
MIRT700337 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT701344 NR4A3 nuclear receptor subfamily 4 group A member 3 2 2
MIRT703519 FKBP15 FK506 binding protein 15 2 2
MIRT703901 EPT1 selenoprotein I 2 2
MIRT705565 ARHGEF18 Rho/Rac guanine nucleotide exchange factor 18 2 2
MIRT709709 DNAJC11 DnaJ heat shock protein family (Hsp40) member C11 2 2
MIRT713108 TMBIM4 transmembrane BAX inhibitor motif containing 4 2 2
MIRT718426 ZNF85 zinc finger protein 85 2 2
MIRT719236 CYSLTR2 cysteinyl leukotriene receptor 2 2 2
MIRT719326 STAC SH3 and cysteine rich domain 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4747 Paclitaxel 36314 NSC125973 approved resistant cell line (A2780)
hsa-miR-4747-5p Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-4747-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4747-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

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