pre-miRNA Information
pre-miRNA hsa-mir-3689d-1   
Genomic Coordinates chr9: 134849609 - 134849682
Description Homo sapiens miR-3689d-1 stem-loop
Comment None
RNA Secondary Structure
pre-miRNA hsa-mir-3689d-2   
Genomic Coordinates chr9: 134850277 - 134850356
Description Homo sapiens miR-3689d-2 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3689d
Sequence 2| GGGAGGUGUGAUCUCACACUCG |23
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs551722268 8 dbSNP
rs143142996 8 dbSNP
rs1236297052 12 dbSNP
rs573148947 14 dbSNP
rs1210004979 14 dbSNP
rs1217460444 14 dbSNP
rs762590109 18 dbSNP
rs574332265 18 dbSNP
rs1164353021 21 dbSNP
rs963741171 21 dbSNP
rs1177416877 22 dbSNP
rs765777344 22 dbSNP
Putative Targets

Gene Information
Gene Symbol EFNB1   
Synonyms CFND, CFNS, EFB1, EFL3, EPLG2, Elk-L, LERK2
Description ephrin B1
Transcript NM_004429   
Expression
Putative miRNA Targets on EFNB1
3'UTR of EFNB1
(miRNA target sites are highlighted)
>EFNB1|NM_004429|3'UTR
   1 GTGCCCGGCACGGCCTCAGGCCCCCGAGGGACAGTCGGCCTGGACCGGACCTCTCCTTTCGCCCCCACACCCCCTCCCCT
  81 TGCCAGCTGTGCCCACCTTTGTATTTAGTTTTGTAGTTTCTTGGCTTTTATAATCCCCCTTTTTCCCTGCCCCCTGGGCT
 161 TCGGAGGGGGGTGCTTGTGCCCCTAACCCCCATGCTCTTGTGCCTTCCCCCTCTGGCCAGGCCTCTGGGCTCCGTGGGGG
 241 CGCCCCTTCTTGGAAGGCAGGGCTGGACACTGATGGACAGCAGGCAGGGAGACAGTCCCCTGGCCCTGCCCCTCCCTCGC
 321 CCCCCTTGCCACCTTCCCAGGACTGCTTGTCCGCTATCATCACTGTTTTTAATGCTTTTGTGTTCATTTTTTAGCTGTCA
 401 ACTCATTTTCATCTGTTTTTTGAAGAAAAATGGAAAAATGTAAAAGGCAGCCCCTCCCCAGGCTTTGTGAGCCTGGCCCA
 481 AGCCAGTACAAGAGGGCCTGGGGCACGATGTGGTCAGCCAGGAAGCATAGGATGCCATTTCTTTTATAGATTCCTTGGTA
 561 TTTCTGGTGGGGTAAGGGGCAGGCCAGGGCTGTTCACGCCCATGAGGGAAGAGGAAAGTGCCACTGGGCAAGGTGTCCCA
 641 CCCTCCCCTCCTGACCCTCCTACGAGGCTTATCCTGGCAATGGGGTAGTCACTGCCACCCTTCCACACACACACACACAC
 721 ACACACACACAAAAAAAAATCCCTTCCTTGTGGGATTCTTGGGCATCTCCTGCCTCCCTCACTCTCACGGTAATTAATGT
 801 CTTAATTGGCTGTTGCCTGGGGAACAGGAGAGCTGCTGCAGGCAGATGACCTCATGGGGGGTGGAGGGAGGTGAGGTGCC
 881 CAGGTGGCTATTTGCCCTGCAGAGCTGGGAGTTTCACCCCCACCCCCCACCCTGTTCTCTCCTTACCTTTGGCATCCTTT
 961 GGCCTGGTGGGGAAACAGAGGCCCAGGGTGGAGACCTAAGCGGGTATAAGACCAGGTGGCCTGCTCCTTTTCTGGGCCCT
1041 AGCACAGGTGGGTAACCCCCACCCAACCCAGCTCCTGCTGCTGTCCCAGTCTTGGGCTGGGGCCTGGAAAGAGGAAGAGG
1121 CTGCCTGGGGCTGGGCCAGCCCGCTGTGCACTTTGACCCCAGTTCCTTGCCAGCACGGCTGCTAACAGACTGCCACTTGA
1201 GTGCGCCTTGCAGGCACTCCCAGAGCAGCCATGGAAGGAGCTGGCCCTCACACCATCCACCTCCACACTGCCTCCTGGCC
1281 AGCTGCCCACCCCAGTGCCAGGTGGGAGAGGGAGCAGAACAGCCAGCCCCTTCCAGGTGGCAGTCGGAAGGGTTTTTGTT
1361 TTTGTTTCTGTTGCCATTTGTGTAAATACTAGTCTTTTTGGAAAAAAAATAATGTAAAGATGTTTTGTATAAACTCTGAA
1441 TTATTTTCTTGTTGCTTTTTTCTTAGAAAAAAATGAGAACTAAAAAAAAAAAATTAACCACATGGAGAAAAAAAAAAAAA
1521 AAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gcucacacucUAGUGUGGAGGg 5'
                    ||| ||||||| 
Target 5' ccctcacaccATC-CACCTCCa 3'
1245 - 1265 147.00 -14.40
2
miRNA  3' gcucACACUCUAG-----UGUGGAGGg 5'
              ||||:|||:     :||:|||| 
Target 5' tcctTGTGGGATTCTTGGGCATCTCCt 3'
745 - 771 146.00 -19.40
3
miRNA  3' gcUCAC-ACUCU-AGUGUGGAGGg 5'
            || | ||:|| |: |||| || 
Target 5' gcAGAGCTGGGAGTTTCACCCCCa 3'
899 - 922 128.00 -19.60
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs763606269 2 dbSNP
rs1216992160 6 dbSNP
rs2230423 7 dbSNP
rs757059116 8 dbSNP
rs781189322 12 dbSNP
rs745795283 13 dbSNP
rs1475253904 15 dbSNP
rs1164585272 20 dbSNP
rs745471569 21 dbSNP
rs1305266674 22 dbSNP
rs768808444 26 dbSNP
rs1159525156 27 dbSNP
rs778933278 33 dbSNP
rs769366668 35 dbSNP
rs772415563 37 dbSNP
rs773636810 38 dbSNP
rs746235111 39 dbSNP
rs1277961022 40 dbSNP
rs1350185209 41 dbSNP
rs775252862 47 dbSNP
rs777218714 48 dbSNP
rs1266755786 49 dbSNP
rs762330996 52 dbSNP
rs1179730824 60 dbSNP
rs187874806 61 dbSNP
rs1308985733 62 dbSNP
rs1213125181 63 dbSNP
rs930246458 64 dbSNP
rs1352160655 70 dbSNP
rs1278223584 71 dbSNP
rs1205986518 85 dbSNP
rs192352004 93 dbSNP
rs948545265 94 dbSNP
rs1225291027 95 dbSNP
rs1293344162 102 dbSNP
rs1048675297 104 dbSNP
rs773851995 119 dbSNP
rs1295595699 121 dbSNP
rs1220141061 126 dbSNP
rs556015483 137 dbSNP
rs1001524055 139 dbSNP
rs1400986394 145 dbSNP
rs1055914079 146 dbSNP
rs1179098183 150 dbSNP
rs1456451645 154 dbSNP
rs1418516040 155 dbSNP
rs1189929202 158 dbSNP
rs768292892 163 dbSNP
rs1437766847 164 dbSNP
rs1193979301 167 dbSNP
rs183063780 169 dbSNP
rs1266400052 170 dbSNP
rs1208511402 172 dbSNP
rs898624832 173 dbSNP
rs1275637753 179 dbSNP
rs1227150273 181 dbSNP
rs1356238436 190 dbSNP
rs773241593 198 dbSNP
rs1283160370 208 dbSNP
rs903010718 219 dbSNP
rs1430734982 222 dbSNP
rs1366928790 223 dbSNP
rs1000100104 235 dbSNP
rs1434132825 238 dbSNP
rs777158947 242 dbSNP
rs1166797656 243 dbSNP
rs953071140 244 dbSNP
rs1412973817 245 dbSNP
rs1168572471 263 dbSNP
rs995552643 273 dbSNP
rs1321655578 277 dbSNP
rs985777432 292 dbSNP
rs1018996911 298 dbSNP
rs1188126564 299 dbSNP
rs759983838 300 dbSNP
rs3196658 305 dbSNP
rs1255341125 310 dbSNP
rs1321644584 319 dbSNP
rs972184429 320 dbSNP
rs1343628721 321 dbSNP
rs1356563256 323 dbSNP
rs1227275698 325 dbSNP
rs1371258794 341 dbSNP
rs41312134 353 dbSNP
rs1309003414 354 dbSNP
rs930120978 357 dbSNP
rs1349240400 359 dbSNP
rs1248837695 360 dbSNP
rs201242983 387 dbSNP
rs35418748 387 dbSNP
rs1431743994 394 dbSNP
rs1356230313 403 dbSNP
rs984402333 412 dbSNP
rs1287131841 413 dbSNP
rs1397046386 420 dbSNP
rs1189851220 432 dbSNP
rs1488329632 441 dbSNP
rs910118292 450 dbSNP
rs1008371051 451 dbSNP
rs753021343 453 dbSNP
rs933659472 456 dbSNP
rs1271929965 461 dbSNP
rs1203803155 479 dbSNP
rs1049972682 480 dbSNP
rs1198824062 481 dbSNP
rs1302881578 490 dbSNP
rs1217289611 499 dbSNP
rs1366600588 499 dbSNP
rs188235570 508 dbSNP
rs895772980 522 dbSNP
rs1339487395 527 dbSNP
rs1411642744 532 dbSNP
rs1456248805 533 dbSNP
rs572893880 536 dbSNP
rs1307502702 538 dbSNP
rs1435354533 543 dbSNP
rs1042183732 558 dbSNP
rs1804569 570 dbSNP
rs1174167324 578 dbSNP
rs1432788699 580 dbSNP
rs903042793 585 dbSNP
rs1185168515 587 dbSNP
rs924271232 594 dbSNP
rs956987207 598 dbSNP
rs1409238658 599 dbSNP
rs1179303724 607 dbSNP
rs1804568 609 dbSNP
rs751436746 626 dbSNP
rs1369036489 630 dbSNP
rs1471934307 644 dbSNP
rs1251646463 650 dbSNP
rs990312671 660 dbSNP
rs999966033 664 dbSNP
rs1257426177 678 dbSNP
rs1207639537 686 dbSNP
rs1032781996 696 dbSNP
rs1472423687 703 dbSNP
rs1161829091 704 dbSNP
rs1346004323 704 dbSNP
rs1455924621 704 dbSNP
rs772633678 704 dbSNP
rs867635378 704 dbSNP
rs1411906121 711 dbSNP
rs1161538166 718 dbSNP
rs1189219857 718 dbSNP
rs71947464 722 dbSNP
rs1421666246 723 dbSNP
rs915633347 725 dbSNP
rs1466355505 727 dbSNP
rs1330881847 728 dbSNP
rs889044149 729 dbSNP
rs200158453 730 dbSNP
rs1233876051 731 dbSNP
rs1310749748 731 dbSNP
rs1326762645 731 dbSNP
rs1395457945 731 dbSNP
rs1491378734 731 dbSNP
rs199636325 731 dbSNP
rs868274232 731 dbSNP
rs61387446 732 dbSNP
rs16990748 733 dbSNP
rs58007755 733 dbSNP
rs57536611 734 dbSNP
rs59751961 734 dbSNP
rs59133604 735 dbSNP
rs688969 735 dbSNP
rs1340474115 736 dbSNP
rs779563777 737 dbSNP
rs1281940797 739 dbSNP
rs981286230 742 dbSNP
rs928591028 743 dbSNP
rs971873349 748 dbSNP
rs1248290919 773 dbSNP
rs1026470394 776 dbSNP
rs1463249762 779 dbSNP
rs951549723 783 dbSNP
rs367956022 785 dbSNP
rs1218896698 788 dbSNP
rs1210209509 789 dbSNP
rs1257079322 797 dbSNP
rs1489425090 804 dbSNP
rs910023591 806 dbSNP
rs1244187785 829 dbSNP
rs747669043 840 dbSNP
rs937586121 846 dbSNP
rs1308114459 851 dbSNP
rs898512345 852 dbSNP
rs1364721593 856 dbSNP
rs931303890 856 dbSNP
rs749040540 857 dbSNP
rs1327078730 859 dbSNP
rs1205401522 860 dbSNP
rs768215054 877 dbSNP
rs992114501 882 dbSNP
rs771518919 884 dbSNP
rs1441782618 886 dbSNP
rs950078081 887 dbSNP
rs1056069 888 dbSNP
rs1056070 895 dbSNP
rs866091017 896 dbSNP
rs1390299162 902 dbSNP
rs774010970 909 dbSNP
rs1019770720 916 dbSNP
rs1389098258 918 dbSNP
rs903293995 928 dbSNP
rs1434638729 929 dbSNP
rs1265223415 933 dbSNP
rs1209208657 943 dbSNP
rs936058106 946 dbSNP
rs1170025126 947 dbSNP
rs1483329599 949 dbSNP
rs1276936447 956 dbSNP
rs999782113 970 dbSNP
rs1341732157 977 dbSNP
rs1032560687 983 dbSNP
rs1235925837 987 dbSNP
rs1471078237 1002 dbSNP
rs1173536015 1003 dbSNP
rs1054223791 1012 dbSNP
rs1401875318 1020 dbSNP
rs957037722 1022 dbSNP
rs1369583271 1024 dbSNP
rs1172761605 1025 dbSNP
rs199742261 1031 dbSNP
rs747472229 1037 dbSNP
rs989814578 1038 dbSNP
rs1341649793 1046 dbSNP
rs1197891079 1058 dbSNP
rs772737811 1070 dbSNP
rs1472917408 1073 dbSNP
rs888908844 1078 dbSNP
rs969826458 1086 dbSNP
rs1482744694 1090 dbSNP
rs760553708 1096 dbSNP
rs1277005317 1098 dbSNP
rs1343117176 1099 dbSNP
rs1007470200 1101 dbSNP
rs1255839825 1104 dbSNP
rs1040686936 1110 dbSNP
rs901538403 1112 dbSNP
rs771597894 1114 dbSNP
rs1286947304 1126 dbSNP
rs1407492288 1131 dbSNP
rs770866635 1134 dbSNP
rs939825619 1143 dbSNP
rs777324758 1144 dbSNP
rs919821093 1146 dbSNP
rs1171789329 1161 dbSNP
rs1457525732 1177 dbSNP
rs1156902171 1178 dbSNP
rs1025957678 1203 dbSNP
rs1049736492 1205 dbSNP
rs1286315157 1206 dbSNP
rs192955667 1210 dbSNP
rs1005932786 1211 dbSNP
rs1261043317 1212 dbSNP
rs1017120401 1225 dbSNP
rs1041110859 1241 dbSNP
rs1481551783 1248 dbSNP
rs1228374046 1258 dbSNP
rs1199793621 1264 dbSNP
rs184659322 1265 dbSNP
rs1464894783 1270 dbSNP
rs1160635540 1276 dbSNP
rs1361804387 1277 dbSNP
rs775505331 1298 dbSNP
rs763246013 1301 dbSNP
rs1435320470 1303 dbSNP
rs999665133 1315 dbSNP
rs1456700000 1328 dbSNP
rs1032612778 1340 dbSNP
rs894045844 1341 dbSNP
rs1471823276 1353 dbSNP
rs375146294 1354 dbSNP
rs15090 1359 dbSNP
rs917478696 1360 dbSNP
rs1189500204 1381 dbSNP
rs1466405633 1383 dbSNP
rs1246639112 1398 dbSNP
rs1388181371 1399 dbSNP
rs764109940 1401 dbSNP
rs1208491371 1402 dbSNP
rs971645832 1403 dbSNP
rs1301589451 1408 dbSNP
rs1229563980 1410 dbSNP
rs1353602008 1411 dbSNP
rs1313703359 1415 dbSNP
rs1228755976 1421 dbSNP
rs977845326 1427 dbSNP
rs1318297560 1434 dbSNP
rs751666385 1467 dbSNP
rs1022627251 1468 dbSNP
rs1230864420 1470 dbSNP
rs970088784 1474 dbSNP
rs1281064320 1476 dbSNP
rs1354337792 1477 dbSNP
rs1169287247 1482 dbSNP
rs981224361 1482 dbSNP
rs1215739131 1483 dbSNP
rs765483945 1487 dbSNP
rs1388482184 1496 dbSNP
rs1284004832 1497 dbSNP
rs961214642 1504 dbSNP
rs1249004023 1506 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gcucacacucUAGUGUGGAGGg 5'
                    ||| ||||||| 
Target 5' cccucacaccAUC-CACCUCCa 3'
1 - 21
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000204961.4 | 3UTR | CCCUCACACCAUCCACCUCCACACUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
231 hsa-miR-3689d Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059166 TXNIP thioredoxin interacting protein 2 4
MIRT080699 KIAA1468 KIAA1468 2 2
MIRT218770 CDKN1A cyclin dependent kinase inhibitor 1A 2 2
MIRT278059 KHNYN KH and NYN domain containing 2 2
MIRT345933 EIF4A1 eukaryotic translation initiation factor 4A1 2 2
MIRT366238 VMA21 VMA21, vacuolar ATPase assembly factor 2 2
MIRT449689 CNNM2 cyclin and CBS domain divalent metal cation transport mediator 2 2 2
MIRT451149 C19orf53 chromosome 19 open reading frame 53 2 2
MIRT451266 NDUFA11 NADH:ubiquinone oxidoreductase subunit A11 2 2
MIRT451375 C19orf43 telomerase RNA component interacting RNase 2 2
MIRT451570 CIAPIN1 cytokine induced apoptosis inhibitor 1 2 2
MIRT451585 HIRIP3 HIRA interacting protein 3 2 2
MIRT451614 MEIS3P1 Meis homeobox 3 pseudogene 1 2 2
MIRT451763 ZNF611 zinc finger protein 611 2 6
MIRT452383 LY6E lymphocyte antigen 6 family member E 2 4
MIRT452573 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT452735 PTGES3L prostaglandin E synthase 3 like 2 6
MIRT452867 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT452975 CABP4 calcium binding protein 4 2 2
MIRT453215 CERS1 ceramide synthase 1 2 2
MIRT453259 PARP11 poly(ADP-ribose) polymerase family member 11 2 2
MIRT453449 GLG1 golgi glycoprotein 1 2 2
MIRT453479 PITPNM3 PITPNM family member 3 2 2
MIRT453663 CD207 CD207 molecule 2 6
MIRT453724 RAP1GDS1 Rap1 GTPase-GDP dissociation stimulator 1 2 2
MIRT453760 RANGAP1 Ran GTPase activating protein 1 2 2
MIRT454181 AP1S3 adaptor related protein complex 1 sigma 3 subunit 2 6
MIRT454330 PPARA peroxisome proliferator activated receptor alpha 2 2
MIRT454338 CDKL1 cyclin dependent kinase like 1 2 2
MIRT454427 GTF2F1 general transcription factor IIF subunit 1 2 2
MIRT454665 FBXL18 F-box and leucine rich repeat protein 18 2 2
MIRT454825 POLR2J3 RNA polymerase II subunit J3 2 2
MIRT455130 TBC1D25 TBC1 domain family member 25 2 2
MIRT455166 SUV39H1 suppressor of variegation 3-9 homolog 1 2 2
MIRT455416 RXRB retinoid X receptor beta 2 2
MIRT455668 GLO1 glyoxalase I 2 2
MIRT455999 CYP2C19 cytochrome P450 family 2 subfamily C member 19 2 2
MIRT456446 TMEM81 transmembrane protein 81 2 2
MIRT456642 NOS1AP nitric oxide synthase 1 adaptor protein 2 2
MIRT456728 TMEM239 transmembrane protein 239 2 2
MIRT457131 ASPH aspartate beta-hydroxylase 2 2
MIRT457157 MXRA7 matrix remodeling associated 7 2 2
MIRT457358 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT457458 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT457619 UPK3BL uroplakin 3B like 1 2 2
MIRT457692 ZNF587 zinc finger protein 587 2 2
MIRT457727 SMOX spermine oxidase 2 2
MIRT457788 VWA1 von Willebrand factor A domain containing 1 2 2
MIRT457875 THEM6 thioesterase superfamily member 6 2 4
MIRT457909 ZNF212 zinc finger protein 212 2 2
MIRT458395 ABCF1 ATP binding cassette subfamily F member 1 2 2
MIRT458496 MARVELD2 MARVEL domain containing 2 2 2
MIRT458544 CYP2B6 cytochrome P450 family 2 subfamily B member 6 2 2
MIRT458577 TCOF1 treacle ribosome biogenesis factor 1 2 2
MIRT458732 CES2 carboxylesterase 2 2 2
MIRT458814 ZNF843 zinc finger protein 843 2 2
MIRT458931 SAMD4B sterile alpha motif domain containing 4B 2 2
MIRT459341 ZNF17 zinc finger protein 17 2 2
MIRT459365 MPLKIP M-phase specific PLK1 interacting protein 2 6
MIRT459572 NLGN2 neuroligin 2 2 2
MIRT460015 DTX3L deltex E3 ubiquitin ligase 3L 2 4
MIRT460144 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT460653 IGFBP4 insulin like growth factor binding protein 4 2 2
MIRT460798 VPS33A VPS33A, CORVET/HOPS core subunit 2 2
MIRT461058 KCNK6 potassium two pore domain channel subfamily K member 6 2 4
MIRT461458 SLC19A3 solute carrier family 19 member 3 2 2
MIRT461572 SCO1 SCO1, cytochrome c oxidase assembly protein 2 4
MIRT461927 TNFSF14 TNF superfamily member 14 2 2
MIRT461953 C3 complement C3 2 2
MIRT462278 KRR1 KRR1, small subunit processome component homolog 2 2
MIRT462744 EFNB1 ephrin B1 2 2
MIRT463136 ZNF451 zinc finger protein 451 2 4
MIRT463566 ZBTB39 zinc finger and BTB domain containing 39 2 6
MIRT463866 WNT7B Wnt family member 7B 2 2
MIRT464326 UST uronyl 2-sulfotransferase 2 2
MIRT464796 UBE2F ubiquitin conjugating enzyme E2 F (putative) 2 2
MIRT465034 TTC39C tetratricopeptide repeat domain 39C 2 2
MIRT466207 TMED10 transmembrane p24 trafficking protein 10 2 2
MIRT467007 SSBP2 single stranded DNA binding protein 2 2 2
MIRT467029 SRSF1 serine and arginine rich splicing factor 1 2 4
MIRT468001 SKI SKI proto-oncogene 2 2
MIRT468031 SIKE1 suppressor of IKBKE 1 2 6
MIRT468575 SERBP1 SERPINE1 mRNA binding protein 1 2 6
MIRT468834 RRM2 ribonucleotide reductase regulatory subunit M2 2 2
MIRT468970 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT469450 REL REL proto-oncogene, NF-kB subunit 2 6
MIRT470888 PLXND1 plexin D1 2 2
MIRT470953 PKM pyruvate kinase, muscle 2 2
MIRT471828 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 2
MIRT472590 NACC1 nucleus accumbens associated 1 2 2
MIRT472805 MTMR12 myotubularin related protein 12 2 2
MIRT472818 MTMR10 myotubularin related protein 10 2 6
MIRT472914 MSN moesin 2 2
MIRT474558 KLHDC3 kelch domain containing 3 2 2
MIRT474716 KIF13A kinesin family member 13A 2 6
MIRT475279 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT475300 IFNLR1 interferon lambda receptor 1 2 2
MIRT475759 HDLBP high density lipoprotein binding protein 2 2
MIRT475786 HDGF heparin binding growth factor 2 2
MIRT475933 GXYLT2 glucoside xylosyltransferase 2 2 8
MIRT476212 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT476238 GNPNAT1 glucosamine-phosphate N-acetyltransferase 1 2 4
MIRT476799 FNDC3B fibronectin type III domain containing 3B 2 2
MIRT477988 DNAL1 dynein axonemal light chain 1 2 2
MIRT478317 DDN dendrin 2 2
MIRT479257 CHSY1 chondroitin sulfate synthase 1 2 2
MIRT479344 CEP97 centrosomal protein 97 2 2
MIRT479522 CDCA4 cell division cycle associated 4 2 2
MIRT479906 CCDC117 coiled-coil domain containing 117 2 6
MIRT481147 AVL9 AVL9 cell migration associated 2 6
MIRT481735 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT482089 ALG8 ALG8, alpha-1,3-glucosyltransferase 2 2
MIRT482389 AEN apoptosis enhancing nuclease 2 2
MIRT483093 TFPI tissue factor pathway inhibitor 2 2
MIRT484246 ANK1 ankyrin 1 2 2
MIRT484342 EPN1 epsin 1 2 4
MIRT489141 C5orf38 chromosome 5 open reading frame 38 2 2
MIRT489163 MRPL12 mitochondrial ribosomal protein L12 2 4
MIRT489547 SOX11 SRY-box 11 2 4
MIRT489780 GRINA glutamate ionotropic receptor NMDA type subunit associated protein 1 2 2
MIRT489799 KRT80 keratin 80 2 6
MIRT490535 KIAA1715 lunapark, ER junction formation factor 2 2
MIRT492198 SOCS1 suppressor of cytokine signaling 1 2 2
MIRT492283 SHISA6 shisa family member 6 2 4
MIRT501059 SMARCAD1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 2 4
MIRT501094 SLC5A6 solute carrier family 5 member 6 2 4
MIRT503870 CBS cystathionine-beta-synthase 2 2
MIRT507981 BCL2L13 BCL2 like 13 2 4
MIRT508125 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT508205 SLC35E1 solute carrier family 35 member E1 2 2
MIRT508385 SPTBN2 spectrin beta, non-erythrocytic 2 2 4
MIRT510308 PDRG1 p53 and DNA damage regulated 1 2 2
MIRT510462 ZDHHC18 zinc finger DHHC-type containing 18 2 2
MIRT512227 ATXN3 ataxin 3 2 8
MIRT512665 STEAP3 STEAP3 metalloreductase 2 2
MIRT514184 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT515053 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT515138 ZNF799 zinc finger protein 799 2 4
MIRT515452 ZNF747 zinc finger protein 747 2 2
MIRT515791 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT515905 AGTPBP1 ATP/GTP binding protein 1 2 2
MIRT516129 MRPS16 mitochondrial ribosomal protein S16 2 6
MIRT516679 ZNF860 zinc finger protein 860 2 4
MIRT516750 ZNF100 zinc finger protein 100 2 2
MIRT516971 OR7D2 olfactory receptor family 7 subfamily D member 2 2 2
MIRT517491 NPAP1 nuclear pore associated protein 1 2 2
MIRT517774 PROM2 prominin 2 2 2
MIRT517938 ZNF431 zinc finger protein 431 2 4
MIRT518386 ZNF250 zinc finger protein 250 2 2
MIRT520621 TMEM41B transmembrane protein 41B 2 2
MIRT521028 SLC30A5 solute carrier family 30 member 5 2 2
MIRT521454 RAD51 RAD51 recombinase 2 2
MIRT521564 PTPLB 3-hydroxyacyl-CoA dehydratase 2 1 1
MIRT521581 PTBP2 polypyrimidine tract binding protein 2 2 2
MIRT522263 NKRF NFKB repressing factor 2 2
MIRT522410 MXI1 MAX interactor 1, dimerization protein 2 2
MIRT522543 MED28 mediator complex subunit 28 2 6
MIRT522915 KCNE3 potassium voltage-gated channel subfamily E regulatory subunit 3 2 2
MIRT523029 IGF1 insulin like growth factor 1 2 2
MIRT523854 ESPL1 extra spindle pole bodies like 1, separase 2 4
MIRT524184 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT524520 CDK19 cyclin dependent kinase 19 2 2
MIRT524674 C12orf5 TP53 induced glycolysis regulatory phosphatase 2 2
MIRT530257 ZNF620 zinc finger protein 620 2 2
MIRT540691 BMP3 bone morphogenetic protein 3 2 2
MIRT540976 C17orf85 nuclear cap binding subunit 3 2 2
MIRT545505 NAP1L1 nucleosome assembly protein 1 like 1 2 2
MIRT545631 GGCX gamma-glutamyl carboxylase 2 2
MIRT547358 NAA30 N(alpha)-acetyltransferase 30, NatC catalytic subunit 2 2
MIRT550701 MPL MPL proto-oncogene, thrombopoietin receptor 2 4
MIRT550717 PMPCA peptidase, mitochondrial processing alpha subunit 2 4
MIRT551203 NCR3LG1 natural killer cell cytotoxicity receptor 3 ligand 1 2 2
MIRT553999 SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 2 4
MIRT561081 LLPH LLP homolog, long-term synaptic facilitation 2 2
MIRT563523 TAF8 TATA-box binding protein associated factor 8 2 2
MIRT564463 SLC35E2 solute carrier family 35 member E2 2 2
MIRT565233 TRAF6 TNF receptor associated factor 6 2 2
MIRT566618 NKAP NFKB activating protein 2 2
MIRT569527 AP5Z1 adaptor related protein complex 5 zeta 1 subunit 2 2
MIRT569639 QPCT glutaminyl-peptide cyclotransferase 2 2
MIRT570253 SSPN sarcospan 2 2
MIRT570570 OTUD7B OTU deubiquitinase 7B 2 2
MIRT570621 MTF2 metal response element binding transcription factor 2 2 2
MIRT571098 ISLR2 immunoglobulin superfamily containing leucine rich repeat 2 2 2
MIRT575196 Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 2 2
MIRT575554 Cd99 CD99 antigen 2 2
MIRT575634 Gnl3l guanine nucleotide binding protein-like 3 (nucleolar)-like 2 2
MIRT608267 NOP14 NOP14 nucleolar protein 2 2
MIRT609314 FXYD6 FXYD domain containing ion transport regulator 6 2 2
MIRT627670 RPL28 ribosomal protein L28 2 2
MIRT631185 TSPAN14 tetraspanin 14 2 2
MIRT631964 YIPF5 Yip1 domain family member 5 2 2
MIRT632885 GINM1 glycoprotein integral membrane 1 2 2
MIRT642618 CDKN3 cyclin dependent kinase inhibitor 3 2 2
MIRT645609 TSPAN6 tetraspanin 6 2 2
MIRT662227 PGBD4 piggyBac transposable element derived 4 2 2
MIRT662329 MYLK3 myosin light chain kinase 3 2 2
MIRT662725 LRRC3C leucine rich repeat containing 3C 2 2
MIRT665520 USP14 ubiquitin specific peptidase 14 2 2
MIRT666634 RBMS2 RNA binding motif single stranded interacting protein 2 2 2
MIRT668969 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT670925 DESI1 desumoylating isopeptidase 1 2 2
MIRT673939 ZNF500 zinc finger protein 500 2 2
MIRT674675 PLCE1 phospholipase C epsilon 1 2 2
MIRT675230 MAK male germ cell associated kinase 2 2
MIRT680864 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT681047 ZDBF2 zinc finger DBF-type containing 2 2 2
MIRT681105 CEP57L1 centrosomal protein 57 like 1 2 2
MIRT683553 HAVCR1 hepatitis A virus cellular receptor 1 2 2
MIRT684508 C1orf174 chromosome 1 open reading frame 174 2 2
MIRT684812 BRIX1 BRX1, biogenesis of ribosomes 2 2
MIRT685981 CCDC77 coiled-coil domain containing 77 2 2
MIRT686709 TBC1D19 TBC1 domain family member 19 2 2
MIRT686867 SLC25A32 solute carrier family 25 member 32 2 2
MIRT688908 C11orf84 chromosome 11 open reading frame 84 2 2
MIRT691208 KLHL30 kelch like family member 30 2 2
MIRT692298 CNNM3 cyclin and CBS domain divalent metal cation transport mediator 3 2 2
MIRT694380 MTA1 metastasis associated 1 2 2
MIRT696497 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT700686 POLR3D RNA polymerase III subunit D 2 2
MIRT701088 PAPOLG poly(A) polymerase gamma 2 2
MIRT703373 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT706189 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT706648 SMIM19 small integral membrane protein 19 2 2
MIRT709466 KRTAP19-1 keratin associated protein 19-1 2 2
MIRT709699 DMWD DM1 locus, WD repeat containing 2 2
MIRT710693 LYRM4 LYR motif containing 4 2 2
MIRT713457 DNAJC11 DnaJ heat shock protein family (Hsp40) member C11 2 2
MIRT722409 RARS2 arginyl-tRNA synthetase 2, mitochondrial 2 2
MIRT725391 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT725548 DNMT3A DNA methyltransferase 3 alpha 2 2

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