miRTarBase - #MIRT463282


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pre-miRNA Information
pre-miRNA hsa-mir-3119-1   
Genomic Coordinates chr1: 170151378 - 170151462
Description Homo sapiens miR-3119-1 stem-loop
Comment None
RNA Secondary Structure
pre-miRNA hsa-mir-3119-2   
Genomic Coordinates chr1: 170151378 - 170151462
Description Homo sapiens miR-3119-2 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3119
Sequence 9| UGGCUUUUAACUUUGAUGGC |28
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs976695651 1 dbSNP
rs924732934 1 dbSNP
rs537840374 2 dbSNP
rs1264087496 6 dbSNP
rs1484055858 9 dbSNP
rs1467832924 10 dbSNP
rs1198335970 11 dbSNP
rs1431115212 12 dbSNP
rs1176953550 16 dbSNP
Putative Targets

Gene Information
Gene Symbol ZFX   
Synonyms ZNF926
Description zinc finger protein, X-linked
Transcript NM_001178095   
Other Transcripts NM_001178085 , NM_001178086 , NM_001178084 , NM_003410   
Expression
Putative miRNA Targets on ZFX
3'UTR of ZFX
(miRNA target sites are highlighted)		 
>ZFX|NM_001178095|3'UTR
   1 TTATTGGCCCTGATGGACATCCTTTGACTGTCTATCCTTGCATGATTTGTGGGAAGAAGTTTAAGTCGAGAGGTTTTTTG
  81 AAAAGGCACATGAAAAACCATCCCGAACACCTTGCCAAGAAGAAATACCGCTGTACTGACTGTGATTACACTACCAACAA
 161 GAAGATAAGTTTACACAACCACCTGGAGAGCCACAAGCTGACCAGCAAGGCAGAGAAGGCCATTGAATGCGATGAGTGTG
 241 GGAAGCATTTCTCTCATGCAGGGGCTTTGTTTACTCACAAAATGGTGCATAAGGAAAAAGGAGCCAACAAAATGCACAAG
 321 TGTAAATTCTGTGAATACGAGACAGCTGAACAAGGGTTATTGAATCGCCACCTCTTGGCAGTCCACAGCAAGAACTTTCC
 401 TCATATTTGTGTGGAGTGTGGTAAGGGTTTTCGTCACCCGTCAGAGCTCAAAAAGCACATGAGAATCCATACTGGGGAGA
 481 AGCCGTACCAATGCCAGTACTGCGAATATAGGTCTGCAGACTCTTCTAACTTGAAAACGCATGTCAAAACTAAGCATAGT
 561 AAAGAGATGCCATTCAAGTGTGACATTTGTCTTCTGACTTTCTCGGATACCAAAGAGGTGCAGCAACATGCTCTTATCCA
 641 CCAAGAAAGCAAAACACACCAGTGTTTGCATTGCGACCACAAGAGTTCGAACTCAAGTGATTTGAAACGACACATAATTT
 721 CAGTTCACACGAAAGACTACCCCCATAAGTGTGACATGTGTGATAAAGGCTTTCACAGGCCTTCAGAACTCAAGAAACAC
 801 GTGGCTGCCCACAAGGGCAAAAAAATGCACCAGTGTAGACATTGTGACTTTAAGATTGCAGATCCATTTGTTCTAAGTCG
 881 CCATATTCTCTCAGTTCACACAAAGGATCTTCCATTTAGGTGCAAGAGATGTAGAAAGGGATTTAGGCAACAGAGTGAGC
 961 TTAAAAAGCATATGAAGACACACAGTGGCAGGAAAGTGTATCAGTGTGAGTACTGTGAGTATAGCACTACAGATGCCTCA
1041 GGCTTTAAACGGCACGTTATTTCCATTCACACGAAAGACTATCCTCACCGGTGTGAGTACTGCAAGAAAGGCTTCCGAAG
1121 ACCTTCAGAAAAGAACCAGCACATAATGCGACATCATAAAGAAGTTGGCCTGCCCTAACAATACTTCTACAGAACGTTTG
1201 TAGAGATATTGGCCTTGAAGCAGAAAATTCATTTTAAAGCCAATCAGTCTCATTCACATACAATACTGTATATTGATTTA
1281 TGCTGTGTACAAATAGAATTATTACTTCTAGTTGACTTTTTTTTAAATATACATTTTGCTCAGTAGTGTGTTCTGAATTC
1361 TATTCAGTTTGTTTAATAAATAGGGAAAACTGGCAACATGCTAGTTACTTTTAATAAAGTAATCCCTGATTCTATACCGA
1441 AGTTTTATATCTTAGAATTTTATATTTATTTAAATATTTACCTTGCTTACCTTGATGGTACTCTTCTAAGACCATTAACT
1521 TAAGGTAACTTTATATTGGTAACTCTGAAAGTATTCATGTTGACTCATTTTTTTCCCCATACATTTCTCACAATAAAATT
1601 GTCAGAGACATCTACTAATATAAATGGGAGATTTTACAGTCAGGTCTAATTATCATAACATGGAAGTCATTTACTTGTCT
1681 TGCTTAATATTTTCAGACCACTTGACAGTGAAAGTTTCCATTTGAGCTGTTGCGTCCCTGGCTTTGCTGAGTAAAGAGCA
1761 GTGGCTGGGTTCGTGTTTACTTTTCAAATATACTTCTTTTGGCTTTCTTTGGATTATTTACATCTTTTGTCAGCGTAGCA
1841 AACTTTTAGAAAACCTTATTGAAAAACTGTGCTTGCTCATGTTGTATTTTGATTATTCTGTCTGTGCGGCTTCATCTTGG
1921 AATGGTTGTGTGCTACAAATGACACTTACTGAGGACTGCATTTTGGAATCTCCTAGAGGTAACTCATGGCTTATAGGATC
2001 TTTTGCAACTTTATGTATGTAAATGTACCCTGAATTATATATATACACATATATATCATGTACCTGTGTGTATTGCTTAT
2081 TTTACATATTTATACACACAACCCCAAGTAGTAGTTGTTTAAAATCTATAATGAAAAGTATTAAATTTACAATAACATGA
2161 AAGATCCAGGGATGCATGAGAGAGCATTTTGTAAGTCATGCTCTTCAGAGAGACTACTCAGGTGAAGAATTAGAAGGAAA
2241 ATAAGGACACTAGTATTTTTAAAGAGTAAAGATATTTTCTTTTAAATATCTTTGGTAATTGAAACATAGAGGTTAAGATG
2321 TTTCTAGGTAGAATGTTTTCATACAATTTCACCTCCATGTCTTTATGTTTTTCTGAAAAGCAAATGAGTATCCAGACATG
2401 ACTCCCACAGTTCTCTTTGAGAAGCCTGAGAGGGAACTCTGTCTTACCTAGTGAGGGGGATGGAAAAGAAGTGATGGCTC
2481 TGTGGACCAGAGAACGGGTGCTAATTATGACTTCACACTCGGCAAGTTCAGGCTGATCTGTTATTTCTCAGTTACAGTTA
2561 GCAAACTTTAAAAACTTAACACTCAAGTTGGCTTTGATTAAAAGGTAAAGATGTGTTTTAAGTGGATAAGGAAAGTCTGA
2641 GGCCTTATTTGGAACATCACTAAGTCTTCCACAGGTTTTTTGTTTGTTTGTTTTTTTTTGTTGTTTTTTTTTCTTAAGAC
2721 GGAGTCTTGCTCTGTTGCCCAGGCTGGACTGCAGTGGTGTGATCACTGCAACCTCTGCAGCTCACTGCAACCTCTGCTTC
2801 CTGGGTTCAAGCAATTATCTGCCTCAGCCTCTCGAGTAGCTGGGATTACAGGCGCCCACCACCACGCCCGGCTAATTTTT
2881 TGTATTTTTAATAGAGATGGGGTTTCACCATCTTGGCCAGGCTGGTCTTGAACCCTGACCTCGTGATCCACCTGCCTCGG
2961 CCTTCCATAGTGCTGGGTTTACAGGCGTGAGCCACCGTGCCCAGACACCACATAGGTCTGAATCAGTGTCATACATTCAT
3041 AAAACAAACTCGGTTAATTAGAACTTGGTTATGTTAAGACGAATCTGGGAGAACAGAAAACAGTTTTTGGGGTCCCTTCA
3121 GTTGGCTATTGGTCCGTATGCATCTAGCACATTGTAGGAGATTTAGAAATTGTCTTCCCACCCGATAGCTGCCTTGTCAC
3201 CTCATTATGGTGCTCCATCCCCTGTGTGCTTAGGTTTTTACCTTTCATCTTTCTCTTTGCCATTGATGTTTGTATTCAAG
3281 AGTTATATTTTTAGGGTTAGAAATCAAAATATTTGGTGTTTGGCAAACCTCTGAAGTGCTAGACTGATTTAGTCTAGTTT
3361 TAAACCAAGTGCTTTAGGCAGGTGTGAACTCCAGCCCAAATGCCAGTCAAAGTCAAGGCATGGGTTTTCCTAGCCTATCT
3441 TATAGGAAATTCCTGTACCTTCTTGGCCCCCATAATGTGTTTTTTTTTTTTTTTTTTTTTTAAACTAACTTACAATTTTG
3521 TGATCCGTGATTCATTGCCCTGCGATTCTTGAAAGCTCTGTCTGTTTTTTTGTGAGAACCTTTAAAATCTCCCTTAATTT
3601 TTATTTTCCCAGAAATAATGTAAAAACACTTAAATGAAAGTGGAAATGTATTAATTTTAAATCCTATAAAATTAATACAG
3681 AAAATATAAATGATTGGGTCATTTAACTATATTTTTTTAAATAAACTGAAAGATAAAGAACACAACACTTCACACATTTT
3761 ATATTTCTCTTACATACTCCGGAATCATACACAGTTCTTTTTAAAGCACAACATTAAAACCTTTAAAAGGTATTTAAGGG
3841 TTTGGTCAAGTGAATATGATAAAACATACTTGTCTGTATAAAGAGAAAATGAAATTGTAGTCACTGTTATGTACTGACAT
3921 TAGTTACAACCTAGTTTTAATTCTTAAAACAATTTTGATTAGCAAAGCTAAAAAAAAATGGATGTTTCAGTTAAATGTTT
4001 TAAAGAGGTACAGATTTTTACAAGGACATAATATAAGTTATTGTTCTGTAGAAATATCCTATTAAATATTGTATGTCCCT
4081 CCCTCTGTACACTTTGTAAAGAAAGTAAAATACATAAAAAGAAAATCATATAGGGATGTGTGACATTATTGTAATTGTGT
4161 ACTTGAGAATAACGTGCAAAAATAAAAATCAGAATATTTTCCTGTTATTGAATGTTTAGTCTATTTGATACCAGTACTAA
4241 GTTAATGCTTTTTCTCAAGGAAAAAAAATGTACAGTTTTTGTAAACCTAATAAACATCAAAAGCAGTGGATTATTTTCAT
4321 CCCCCCATTTCTTAATTTCTTTTTCACAGCAGTGGAATGCAAAGTGCTTGATTGCTTTGAATTTTGTGACTCGGATGCAA
4401 ATACTGGTAATATTTCAGTTCTGTGAATTTGCAAGTAATATTTCAGAGAAGTTAAGAGGTGATTGGTGAGTCCTTTGATG
4481 AGCATGTCCTTGGAATTCATTTTTTCTTTTATCTTCATAAAGGATTTGTTTTATTAGCATCTCCAATTCCCCTGAGATAA
4561 ATTACTCATGCATAAAGTGGTTTTTGAGAGCACTTAAAGTTCATTTCAGTATTAATTTACAGCATATTTAATCAGTGGGG
4641 ACTGTTACCACCTCCACAACAGAAATCATGCCCTCGAGTTACCCCACTGCGCCCAGTTTAGAGGACTAGTAGATGCTAAC
4721 ATACTAGGGAATGGTCATTGCCACAGTTAAAAATCGGCAGTTAAGTAAATGTCAGGAGTCAAAAGAGATAGAGTTGTGCC
4801 ATCTTTGATTTTATAGACAAGATTCTGCAGTTCTTCCAACTGTATGAACAAACGTTTGCCTAATAGTTGAAACAATAAAT
4881 TAAAATTTTAGGTAAATGACGAAGGGAATGTGGTGAATGTCACTGTCCAGAGCCATAAATCAGACAAAACCATACATAGC
4961 ATGCTGAAAAACTTTTGTAATGGAACACCCAACAAATGACACCTAACCTGTCTGTGATCCAACAAGTCCGATAACATGCT
5041 GCTGTATTTGTATTCTCTGGGAATCTCAGTATTAATAATTTCATTTCCCACAAATTCTAGCATTCATGTAAGGAAAAACA
5121 TGGCTAATCAATATCTTAAAGGGGCAATCTTTCAGAGCAGTGGTTTTCAAAGTATGGCCGGACAGCATTGGCAGCATCTT
5201 AATCTCCTGGGACTTTGTTAAAAATGCAAATTCTCAGCCCCACCCTAGTCCTACTGAATTGGGAAACTGGCGTGGGACCC
5281 AGCAGTCTTTGTTTTAACATGTTCTCCAAGTGATTCTGATGCCTGTTCAAACTTGGGAAACACTTTTAGAGCACTTGAGG
5361 AACCTAAAAGATGACTGGTTCAGCATTTTGTGTGGTAGATAAGAAAGAAATTATCACAAAAAATCAGAAATGAACAGTGA
5441 GAGAAAAATAGGACCCCAGACAGTTTATACCTTCCATTTGCTGTTTTAAAAGTGTGAGCCTGCCAAGTCAACAAGTATGC
5521 CTTTAGCGCACATGTAAATAGCCTGCACTTCCTAAATCTCGTGTGGCCTCCCATGGTTACATTCTTCAAAGGTAAACTGA
5601 GTTGAGAGGAAGATTCAGCATTTAAAAGAGAAGGGTTGAAAAAGATTGTGTGTGTGTGTGTGTGTGTTTAATTGGCCCAG
5681 GGTTACTTAAATAAATCATAACCATTTTGCCACATTCTGTAACTGTTTAGCTAAGGTCAAATTAAGTTTACCCTATGGAT
5761 TTTGTTTCATCTTTTGTTTCGTGTATATACTGTTTGCCTTTTTCATAAAAATCTTGGATTTGTTATATATTGTTCCTGTT
5841 ATTTTTGACATCTTTGCTATTGTAAATAAATTACTATTTTGTTTTAAGTTACCCTAGTGGAGTGTTGGCTATAGACAAGG
5921 TATATACTCGAAACGAGGAGACTTAAATCACACAGTTAATGAATTCCCAACTTGTTTGAAGCTGGAGGTGATTCGACTCC
6001 CTTCAGTGGTTCAACACTAATAATAGCACCAAGGAACATGTCACTGGTGCATATAGG
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cgGUAGUUUCAA--UUUUCGgu 5'
            |:|||:|| |  ||||||  
Target 5' ccCGTCAGAGCTCAAAAAGCac 3'
 437 - 458 144.00 -16.40
2 
miRNA  3' cgGUAGUUUC-----AA-UUUUCGgu 5'
            || ||:||     || ||||||  
Target 5' ggCAACAGAGTGAGCTTAAAAAGCat 3'
 946 - 971 134.00 -9.10
3 
miRNA  3' cggUAGUUUCAAUUUUCGgu 5'
             || ||  | ||||||  
Target 5' ctaATAAACATCAAAAGCag 3'
 4287 - 4306 133.00 -6.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
731146 348 ClinVar
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs139682828 1 dbSNP
rs755229158 18 dbSNP
rs781462585 21 dbSNP
rs748257715 33 dbSNP
rs756639616 68 dbSNP
rs142947188 69 dbSNP
rs2228659 75 dbSNP
rs750678446 96 dbSNP
rs770464534 105 dbSNP
rs1382962915 106 dbSNP
rs1333652595 114 dbSNP
rs771679814 117 dbSNP
rs775044184 125 dbSNP
rs267606422 129 dbSNP
rs887269226 130 dbSNP
rs776053792 131 dbSNP
rs1322401348 137 dbSNP
rs776565504 140 dbSNP
rs761543769 143 dbSNP
rs149869172 144 dbSNP
rs750213223 151 dbSNP
rs1484408368 153 dbSNP
rs759906548 156 dbSNP
rs925019736 166 dbSNP
rs767840780 170 dbSNP
rs752736534 177 dbSNP
rs141995872 183 dbSNP
rs202063826 184 dbSNP
rs778178895 189 dbSNP
rs1355214061 197 dbSNP
rs1454557990 206 dbSNP
rs1172206592 207 dbSNP
rs1340951412 219 dbSNP
rs1400249023 230 dbSNP
rs372941972 231 dbSNP
rs974391730 232 dbSNP
rs1356045776 233 dbSNP
rs747372153 236 dbSNP
rs1304660335 237 dbSNP
rs1318500916 243 dbSNP
rs779286591 253 dbSNP
rs1255064273 257 dbSNP
rs746224649 267 dbSNP
rs1212444359 272 dbSNP
rs1280384649 273 dbSNP
rs771767752 274 dbSNP
rs571082669 276 dbSNP
rs1405964354 281 dbSNP
rs921619691 302 dbSNP
rs746503325 308 dbSNP
rs1420051704 309 dbSNP
rs768172471 315 dbSNP
rs955071759 317 dbSNP
rs1393522258 320 dbSNP
rs776455237 321 dbSNP
rs933228699 327 dbSNP
rs1424822502 330 dbSNP
rs1193330435 334 dbSNP
rs766688861 339 dbSNP
rs769777242 342 dbSNP
rs144297435 348 dbSNP
rs1222944872 360 dbSNP
rs940522347 365 dbSNP
rs147810543 378 dbSNP
rs773201273 380 dbSNP
rs762361961 387 dbSNP
rs762780438 400 dbSNP
rs1200188128 413 dbSNP
rs767859505 426 dbSNP
rs899248950 429 dbSNP
rs1280498890 433 dbSNP
rs1340843621 440 dbSNP
rs752927326 441 dbSNP
rs1001603443 444 dbSNP
rs1253606404 460 dbSNP
rs760695305 464 dbSNP
rs764287419 467 dbSNP
rs753826435 472 dbSNP
rs757825264 474 dbSNP
rs779376824 477 dbSNP
rs750798495 478 dbSNP
rs779602850 480 dbSNP
rs1194490165 485 dbSNP
rs746622902 486 dbSNP
rs768162894 489 dbSNP
rs202145837 491 dbSNP
rs1356241795 497 dbSNP
rs747650106 498 dbSNP
rs141285716 501 dbSNP
rs143557208 504 dbSNP
rs762875158 505 dbSNP
rs1435661709 518 dbSNP
rs1330651442 523 dbSNP
rs1321625120 525 dbSNP
rs770714295 539 dbSNP
rs773999465 540 dbSNP
rs760993473 543 dbSNP
rs990031789 563 dbSNP
rs1297042343 582 dbSNP
rs1308639503 586 dbSNP
rs776827619 605 dbSNP
rs376089345 606 dbSNP
rs1470102339 608 dbSNP
rs1214644134 613 dbSNP
rs148052051 614 dbSNP
rs1269818607 615 dbSNP
rs750888389 622 dbSNP
rs758783556 624 dbSNP
rs1427682509 627 dbSNP
rs766815041 636 dbSNP
rs56171102 637 dbSNP
rs371967051 638 dbSNP
rs754719211 651 dbSNP
rs980866887 660 dbSNP
rs751460995 661 dbSNP
rs754820918 662 dbSNP
rs1415498950 669 dbSNP
rs780651874 672 dbSNP
rs747668510 675 dbSNP
rs755647975 676 dbSNP
rs1020966198 689 dbSNP
rs369124495 690 dbSNP
rs1457945344 694 dbSNP
rs749290255 696 dbSNP
rs770746632 697 dbSNP
rs774264411 705 dbSNP
rs867194697 710 dbSNP
rs927917341 715 dbSNP
rs1196366905 731 dbSNP
rs55704019 741 dbSNP
rs768934718 747 dbSNP
rs776765155 801 dbSNP
rs761910904 808 dbSNP
rs765251984 814 dbSNP
rs1279045205 816 dbSNP
rs1315407761 825 dbSNP
rs1218605237 856 dbSNP
rs1218196602 876 dbSNP
rs372943857 880 dbSNP
rs1482971610 909 dbSNP
rs939337977 918 dbSNP
rs376980290 929 dbSNP
rs967535007 930 dbSNP
rs1255341708 935 dbSNP
rs1476122341 936 dbSNP
rs766783661 951 dbSNP
rs751969128 960 dbSNP
rs371397342 966 dbSNP
rs140896363 986 dbSNP
rs1345346154 990 dbSNP
rs752352008 994 dbSNP
rs1310501617 996 dbSNP
rs1357961278 998 dbSNP
rs755809582 999 dbSNP
rs1033204930 1003 dbSNP
rs777469791 1005 dbSNP
rs1371628051 1018 dbSNP
rs748798870 1038 dbSNP
rs957753890 1041 dbSNP
rs1361301322 1044 dbSNP
rs757272601 1056 dbSNP
rs1311772895 1057 dbSNP
rs150173584 1074 dbSNP
rs1282523060 1080 dbSNP
rs1486637918 1090 dbSNP
rs1188549776 1091 dbSNP
rs771723278 1092 dbSNP
rs199864282 1098 dbSNP
rs941513028 1107 dbSNP
rs751424706 1113 dbSNP
rs748417793 1118 dbSNP
rs769972761 1137 dbSNP
rs932987939 1144 dbSNP
rs1433683179 1145 dbSNP
rs1237021854 1152 dbSNP
rs1171257154 1162 dbSNP
rs138803126 1176 dbSNP
rs1038557801 1179 dbSNP
rs758750697 1179 dbSNP
rs201957788 1182 dbSNP
rs996579981 1185 dbSNP
rs1050808911 1187 dbSNP
rs372957514 1190 dbSNP
rs1280458962 1192 dbSNP
rs774683085 1194 dbSNP
rs374127334 1195 dbSNP
rs768047147 1196 dbSNP
rs760474980 1197 dbSNP
rs1204440360 1205 dbSNP
rs763820951 1210 dbSNP
rs112501460 1220 dbSNP
rs753408336 1221 dbSNP
rs1206412911 1225 dbSNP
rs187192709 1230 dbSNP
rs376311819 1240 dbSNP
rs1357783913 1241 dbSNP
rs1300649813 1243 dbSNP
rs539403251 1244 dbSNP
rs1022771175 1254 dbSNP
rs895783780 1259 dbSNP
rs1396295927 1262 dbSNP
rs1425196408 1264 dbSNP
rs757000001 1273 dbSNP
rs778711257 1286 dbSNP
rs1041752234 1289 dbSNP
rs745458853 1291 dbSNP
rs1294255073 1294 dbSNP
rs1265030410 1309 dbSNP
rs1217298063 1311 dbSNP
rs1487898575 1315 dbSNP
rs1313787379 1317 dbSNP
rs769164751 1317 dbSNP
rs781656650 1317 dbSNP
rs982810366 1317 dbSNP
rs1000471669 1325 dbSNP
rs1354011178 1328 dbSNP
rs748731969 1330 dbSNP
rs908768754 1331 dbSNP
rs1401182674 1334 dbSNP
rs1217319585 1341 dbSNP
rs1360381243 1342 dbSNP
rs192618174 1344 dbSNP
rs1459051459 1346 dbSNP
rs1349941262 1354 dbSNP
rs1163694499 1363 dbSNP
rs777109485 1377 dbSNP
rs921407260 1402 dbSNP
rs1209547330 1404 dbSNP
rs1477462930 1431 dbSNP
rs10126378 1439 dbSNP
rs990879702 1443 dbSNP
rs1028749382 1448 dbSNP
rs1050797573 1451 dbSNP
rs954524872 1452 dbSNP
rs1260408474 1504 dbSNP
rs1219553711 1508 dbSNP
rs1340290547 1513 dbSNP
rs1188974155 1518 dbSNP
rs998462160 1521 dbSNP
rs1292395587 1524 dbSNP
rs1367740115 1524 dbSNP
rs1459567202 1527 dbSNP
rs1401954443 1535 dbSNP
rs1427001937 1538 dbSNP
rs762940015 1538 dbSNP
rs1262201685 1543 dbSNP
rs987535023 1550 dbSNP
rs907563538 1553 dbSNP
rs1162043841 1554 dbSNP
rs185339050 1559 dbSNP
rs1476753801 1560 dbSNP
rs1052739461 1567 dbSNP
rs188305835 1573 dbSNP
rs1190640578 1575 dbSNP
rs774573740 1575 dbSNP
rs1420152121 1584 dbSNP
rs1432038685 1588 dbSNP
rs1467311481 1590 dbSNP
rs962252260 1592 dbSNP
rs372119745 1599 dbSNP
rs1236107642 1601 dbSNP
rs767336920 1608 dbSNP
rs1297259324 1618 dbSNP
rs1300006626 1632 dbSNP
rs1023308902 1638 dbSNP
rs1378467856 1642 dbSNP
rs969916082 1646 dbSNP
rs12389526 1647 dbSNP
rs756950599 1649 dbSNP
rs752464112 1656 dbSNP
rs1174074377 1663 dbSNP
rs1466512133 1664 dbSNP
rs1055768656 1669 dbSNP
rs1171673822 1670 dbSNP
rs917321265 1676 dbSNP
rs950189286 1697 dbSNP
rs1042090408 1698 dbSNP
rs760720628 1702 dbSNP
rs982882459 1702 dbSNP
rs1363296777 1708 dbSNP
rs1179538806 1709 dbSNP
rs1015566027 1721 dbSNP
rs763932001 1725 dbSNP
rs1363402906 1735 dbSNP
rs1248887949 1741 dbSNP
rs778523644 1742 dbSNP
rs1483867648 1750 dbSNP
rs1255994013 1753 dbSNP
rs1232727511 1757 dbSNP
rs1355291915 1763 dbSNP
rs1299246401 1765 dbSNP
rs753740831 1773 dbSNP
rs1335955513 1774 dbSNP
rs1396453948 1776 dbSNP
rs1314088915 1787 dbSNP
rs1311041516 1793 dbSNP
rs1401213863 1793 dbSNP
rs1421406433 1804 dbSNP
rs1211854301 1821 dbSNP
rs1159275296 1825 dbSNP
rs963040733 1830 dbSNP
rs1469828316 1831 dbSNP
rs1362209728 1836 dbSNP
rs375484177 1842 dbSNP
rs778517161 1851 dbSNP
rs1255880774 1854 dbSNP
rs1209410390 1855 dbSNP
rs747440308 1860 dbSNP
rs1286140841 1867 dbSNP
rs974311976 1868 dbSNP
rs1000419437 1870 dbSNP
rs1242534604 1879 dbSNP
rs1347911068 1889 dbSNP
rs1285650739 1897 dbSNP
rs1245034934 1898 dbSNP
rs1339695896 1899 dbSNP
rs16982932 1905 dbSNP
rs1401790322 1908 dbSNP
rs1361025873 1909 dbSNP
rs1189467376 1911 dbSNP
rs899961382 1915 dbSNP
rs773684586 1921 dbSNP
rs921550184 1930 dbSNP
rs997014446 1931 dbSNP
rs932812447 1939 dbSNP
rs768938413 1942 dbSNP
rs986956718 1942 dbSNP
rs1458577621 1944 dbSNP
rs912292522 1944 dbSNP
rs758093446 1950 dbSNP
rs781724403 1952 dbSNP
rs954600189 1957 dbSNP
rs1193080186 1970 dbSNP
rs1444825969 1983 dbSNP
rs934384782 1993 dbSNP
rs1210091544 1994 dbSNP
rs1008671979 1995 dbSNP
rs1271050894 1998 dbSNP
rs1014980755 2000 dbSNP
rs1340891590 2004 dbSNP
rs1418203579 2020 dbSNP
rs892764514 2028 dbSNP
rs1428527049 2036 dbSNP
rs1324803710 2043 dbSNP
rs748449176 2047 dbSNP
rs961702532 2052 dbSNP
rs1044313517 2053 dbSNP
rs1289027112 2054 dbSNP
rs1346203221 2064 dbSNP
rs1436387704 2065 dbSNP
rs770401701 2065 dbSNP
rs1167882940 2071 dbSNP
rs1424755710 2071 dbSNP
rs1474688648 2076 dbSNP
rs1247970126 2084 dbSNP
rs973261084 2089 dbSNP
rs920516407 2090 dbSNP
rs1292355533 2094 dbSNP
rs1369750743 2102 dbSNP
rs778150242 2102 dbSNP
rs958657057 2104 dbSNP
rs1235125684 2114 dbSNP
rs991276695 2117 dbSNP
rs193278826 2118 dbSNP
rs1271988206 2119 dbSNP
rs1212769093 2122 dbSNP
rs771025745 2129 dbSNP
rs1276706959 2130 dbSNP
rs1437205097 2142 dbSNP
rs1242632610 2145 dbSNP
rs977545115 2157 dbSNP
rs1284685925 2159 dbSNP
rs1324191645 2159 dbSNP
rs1320952148 2167 dbSNP
rs748551235 2175 dbSNP
rs1328541410 2176 dbSNP
rs1219209760 2180 dbSNP
rs924571317 2181 dbSNP
rs1248387451 2184 dbSNP
rs1427787257 2186 dbSNP
rs1173665956 2189 dbSNP
rs774380120 2190 dbSNP
rs1491085250 2191 dbSNP
rs1392699197 2193 dbSNP
rs759799252 2196 dbSNP
rs886285983 2200 dbSNP
rs1232115687 2203 dbSNP
rs772266590 2205 dbSNP
rs1016095613 2207 dbSNP
rs763115671 2207 dbSNP
rs1441126144 2222 dbSNP
rs1347288693 2223 dbSNP
rs1158855702 2246 dbSNP
rs150948701 2249 dbSNP
rs962738372 2252 dbSNP
rs1242611870 2260 dbSNP
rs974513593 2263 dbSNP
rs900077349 2267 dbSNP
rs1440539673 2273 dbSNP
rs757035599 2275 dbSNP
rs184685148 2289 dbSNP
rs1335495738 2296 dbSNP
rs1163213772 2301 dbSNP
rs763889865 2302 dbSNP
rs1373116350 2306 dbSNP
rs1441672240 2309 dbSNP
rs987028845 2310 dbSNP
rs753741815 2313 dbSNP
rs1439922465 2319 dbSNP
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rs901529356 6037 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 7543.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_001178086 | 3UTR | CGUUUGUAGAGAUAUUGGCCUUGAAGCAGAAAAUUCAUUUUAAAGCCAAUCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_003410 | 3UTR | GAUAUUGGCCUUGAAGCAGAAAAUUCAUUUUAAAGCCAAUCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000539115.1 | 3UTR | CCAAUCAGUCUCAUUCACAUACAAUACUGUAUAUUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000539115.1 | 3UTR | CCAAUCAGUCUCAUUCACAUACAAUACUGUAUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
67 hsa-miR-3119 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT130164 TXNIP thioredoxin interacting protein 2 4
MIRT364023 SDCBP syndecan binding protein 2 2
MIRT383920 BTG2 BTG anti-proliferation factor 2 2 2
MIRT397609 RACGAP1 Rac GTPase activating protein 1 2 2
MIRT404072 ZBTB21 zinc finger and BTB domain containing 21 2 2
MIRT443202 ECHDC3 enoyl-CoA hydratase domain containing 3 2 2
MIRT446469 THUMPD3 THUMP domain containing 3 2 2
MIRT446489 PRELP proline and arginine rich end leucine rich repeat protein 2 2
MIRT446849 FIBIN fin bud initiation factor homolog (zebrafish) 2 2
MIRT463282 ZFX zinc finger protein, X-linked 2 4
MIRT478441 DAZAP2 DAZ associated protein 2 2 2
MIRT480447 C16orf72 chromosome 16 open reading frame 72 2 2
MIRT480632 BTBD3 BTB domain containing 3 2 6
MIRT487460 ANKRD42 ankyrin repeat domain 42 2 2
MIRT487497 IL1F10 interleukin 1 family member 10 2 4
MIRT491967 USP37 ubiquitin specific peptidase 37 2 2
MIRT495620 PPP1R1C protein phosphatase 1 regulatory inhibitor subunit 1C 2 2
MIRT496151 RPS15A ribosomal protein S15a 2 2
MIRT498042 SNX5 sorting nexin 5 2 6
MIRT500546 XBP1P1 X-box binding protein 1 pseudogene 1 2 8
MIRT503902 ZSCAN25 zinc finger and SCAN domain containing 25 2 2
MIRT513157 BIRC5 baculoviral IAP repeat containing 5 2 6
MIRT519070 KCNK6 potassium two pore domain channel subfamily K member 6 2 2
MIRT519741 ZNF394 zinc finger protein 394 2 4
MIRT522733 LRP8 LDL receptor related protein 8 2 4
MIRT539402 ADIPOR2 adiponectin receptor 2 2 2
MIRT551660 KIAA1143 KIAA1143 2 4
MIRT559131 BTG3 BTG anti-proliferation factor 3 2 4
MIRT559307 ATXN1 ataxin 1 2 2
MIRT559515 ARHGEF26 Rho guanine nucleotide exchange factor 26 2 2
MIRT560771 RRP7A ribosomal RNA processing 7 homolog A 2 2
MIRT562210 HMGB2 high mobility group box 2 2 2
MIRT562734 ZNF468 zinc finger protein 468 2 2
MIRT563070 EMC8 ER membrane protein complex subunit 8 2 2
MIRT563731 ZNF107 zinc finger protein 107 2 4
MIRT576719 Wars tryptophanyl-tRNA synthetase 2 2
MIRT612872 IGFBP5 insulin like growth factor binding protein 5 2 4
MIRT613214 CCDC85C coiled-coil domain containing 85C 2 4
MIRT613591 THSD7A thrombospondin type 1 domain containing 7A 2 2
MIRT614332 NANOS1 nanos C2HC-type zinc finger 1 2 4
MIRT614929 MARCH3 membrane associated ring-CH-type finger 3 2 2
MIRT616257 KANK4 KN motif and ankyrin repeat domains 4 2 2
MIRT617087 FPR1 formyl peptide receptor 1 2 2
MIRT617167 SLC16A5 solute carrier family 16 member 5 2 2
MIRT620350 WDR75 WD repeat domain 75 2 2
MIRT621041 SOX30 SRY-box 30 2 2
MIRT625936 SCYL3 SCY1 like pseudokinase 3 2 2
MIRT636872 BCORL1 BCL6 corepressor like 1 2 2
MIRT637019 CLASP1 cytoplasmic linker associated protein 1 2 2
MIRT637299 ACTN2 actinin alpha 2 2 2
MIRT639734 MAP2K2 mitogen-activated protein kinase kinase 2 2 2
MIRT640811 ZMAT1 zinc finger matrin-type 1 2 2
MIRT642879 SAMD1 sterile alpha motif domain containing 1 2 2
MIRT648116 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT655769 NPTX1 neuronal pentraxin 1 2 2
MIRT655801 NOVA2 NOVA alternative splicing regulator 2 2 2
MIRT659142 DDR2 discoidin domain receptor tyrosine kinase 2 2 2
MIRT660327 BCL11B B-cell CLL/lymphoma 11B 2 2
MIRT662150 IPO11 importin 11 2 2
MIRT664741 METTL16 methyltransferase like 16 2 2
MIRT670134 HOXD12 homeobox D12 2 2
MIRT679027 ZNF419 zinc finger protein 419 2 2
MIRT695596 TMEM199 transmembrane protein 199 2 2
MIRT703345 GATAD2B GATA zinc finger domain containing 2B 2 2
MIRT704097 DST dystonin 2 2
MIRT711833 AMOTL2 angiomotin like 2 2 2
MIRT715820 ZNF598 zinc finger protein 598 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3119 Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-3119 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3119 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-3119 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)

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