pre-miRNA Information
pre-miRNA hsa-mir-520g   
Genomic Coordinates chr19: 53722166 - 53722255
Description Homo sapiens miR-520g stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-520g-3p
Sequence 55| ACAAAGUGCUUCCCUUUAGAGUGU |78
Evidence Experimental
Experiments Array-cloned
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1323826229 2 dbSNP
rs755388007 3 dbSNP
rs1164244906 6 dbSNP
rs1246278474 7 dbSNP
rs765799681 8 dbSNP
rs753182219 9 dbSNP
rs572746807 17 dbSNP
rs1384883413 18 dbSNP
rs1439199232 20 dbSNP
rs780750635 21 dbSNP
rs745461502 22 dbSNP
rs370035590 23 dbSNP
rs1017282550 24 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ZBTB5   
Synonyms -
Description zinc finger and BTB domain containing 5
Transcript NM_014872   
Expression
Putative miRNA Targets on ZBTB5
3'UTR of ZBTB5
(miRNA target sites are highlighted)
>ZBTB5|NM_014872|3'UTR
   1 CTGTTTGTCCTTACAAGACAACGCTGAGGCCAGTTGTCAGACTGAATTTCTTTTGGTAAGCAGTTAATGCCTTTGGGTTC
  81 GAGGCTTCCAGCTGCCCAGTGGCTCTTAAACAGTTTAGCAACTAATAACCGGAGAACTAACATGTAGTATTTGTGCTGCT
 161 GCATTTCTGAGTGAAGTGCACGTCTTGGGAAAGGGATGCAATCCCTGAAACCAGGTGCTTCCTTGGGGTTGAGTAATGCA
 241 GTCAGAAAGTAGTTTGTAATTGATATTAAAAGTGGCACATTTAAAAATTTAAAAATTGAAGTGCAAAAAAAATTTTTTAG
 321 CAATTTTTGTAAAACTGTGTAGCATTTAAATTTCCTATACCTTCTGATGGGAGTATTATATCCCTGTATAGTGATGCAAA
 401 ATGCACTTATGTGTAACCAGTGGTGATTTGGTGCCTGTCTTAAAGGAAGGCCTTTGAGGACACACCTGTCTGCCACAAAT
 481 GCTTTAAAGTGTATCATGAGCTAGTCCTAGGCCTCAAAGTACTGTATTTTTTATTTTTACCTGATTTGCAGTCATAAACA
 561 CTGCACTTTGGTGCTGACACTGGGTCCAGAGTGAGCATTCTCTTGGACTATTAGATGTATATACTTTTGAATACATCACT
 641 GTTGGATAGATGTTTTAACAGTTTTTTCTGGTTTAAAAACCAAATTGTAAATGGAGTGTGTACTTGTAGAGAGTGACAAG
 721 GTATTGTTTCCCTATGTGCTGTTTGAGCAGTATTTTAACCAACTTGTATTACAGATGTTACAGTTCCATGTTAGGAAGTC
 801 AGAAAAGACTTGTGTTTGTCTTTGTTCTGCTGATGTGGAGTCATGTTTTGTGGGGTCTTCCATGGCACATTTACCTGTTG
 881 CTCCGTCCAGATGTTGAGGGCCAGTCTAGGCTGACACATCCTACCCGAGGACAAGCCTGTTCTCCATTTCTTCACTCTCC
 961 CCTCCCCATATAGCAACTCTCCCAGGTTTAGATTACCGTTTTCGACGACAGATTAACCAAAAATGCCCCACACAGGTTTT
1041 ATTACTGTTATATACTATACTTTTAACAGTACAGACCCTAAATTTTATTATTTGTTGCTCCCCCAATCTGATACCAAATG
1121 TTTAAAGTTGTTTGAAATCCAAACATGGTAGTGTTCATGGGTAAATATTTTCTAGGCTATGTAAGAGTTAGCAGCCCATA
1201 GCATAGAAGTAATCAAGTAGCATCTGAGACTGTTGGAGGCACTAGGGCCTCTCTGGGCCCTACAGCCTCACTTCCCCAGC
1281 CTCACCTTGCTGTCCTCTGACACTGCCATCAGGGCTGTTAGTGGCACCTGTATGAGGCCAAGTGTGCGTCCAGGGGAACA
1361 GCACAGGTTAATGCGTCTCCCTAGAACTCATGAAGTCAGTTTAATTCATGCATGAACATGAGTTCATTTTATGTTTTATA
1441 TAGCTTTCTTAGACATACCAAACCATCATTCATAAATCAGATAAATTATTCAGTTTTTGTGTTTAGAAAGCTAAGTATGT
1521 GTAGCTGGAAACAAAAATGAGCGTGTTTTCTCTCCTGTTAATCTAGAGTGTGCAGTTACACATGTGTGGATAATTTCATG
1601 TTCCAGGGGCGCTTGGCATCTCCCATGGACTGATTCCCAGGAAGAAAAGCCCAAAGGGAAACCCACGATTCCTTTCGAGT
1681 AGATGTGGGAAAGAGCCCATTGGAGGATATGAGGTCCTGTGAAATTCAGTTGTGTGTGTGGCTCCTTGTTAGCAGTCATG
1761 TTGACATGGTGTTAGGAGGCTCCCCATCCACCCTTTACATGATGTAGGGACCAGTGTCTTGTGAGATTAACCTTGGGACA
1841 CAGTGGGTTAGCCTGGAGAAAATGAGAGGCCCTGCCTGGACCCAGGGAGAGGAGCCAGTGACACAGGCAGAGCGGTGCAG
1921 CCCTCCTTCCCTTCCATTTGGAGGAGGTGGTGCCAGGAGCCTGCCCGCTTACCTCTGCTGAAGCATAAGTGGACTTTGCT
2001 TTTGGGGCTTATCTCTGATACATGCTGGAGCCCTGCCTCTCCACTGCTAGATGGAACCTGGAATCTCTCATCTACCTCTT
2081 AGTCTGTCAGTTTCTACGTGTGAGAAGCAAGCTTGTGGGCCAGTGTCCTTGTACATGCTGTAGCACTTAAAAAATAATTC
2161 CAGGGTTCCCTGGAAAACCAGTCCCAGGGTTCCTATGATCTGTAGTTTCTACCTGGATTATAACTGGTTTTGGGTACCTG
2241 AATTTTGATTGGTTAGCCTTAATTATAGTCTGGCGTGATCATGTAGAATCTTTTCTGGTGAACAGATCATAAAGTTCTAT
2321 CAAGGAGTTCTATCAAGGCATCCATGTCAGTGGTGCTATGCTGGTTACAACTTGAGATTTTTGAAATAAAAAATTTGTCA
2401 TATTCATGCCTCTAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ugUGAG-AUUUCCCU-UCGUGAAACa 5'
            | || ||||   |  |||||||| 
Target 5' gcAGTCATAAA--CACTGCACTTTGg 3'
548 - 571 150.00 -13.10
2
miRNA  3' ugugAG-AUUUCCCUUCGUGAAACa 5'
              || |||||| |:|| ||||| 
Target 5' cctgTCTTAAAGGAAGGC-CTTTGa 3'
434 - 457 128.00 -15.00
3
miRNA  3' uguGA-GAUUUC-CCUU--CGUGAAACa 5'
             || ||:|||   ||  | |||||| 
Target 5' cctCTGCTGAAGCATAAGTGGACTTTGc 3'
1972 - 1999 127.00 -11.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30528925 11 COSMIC
COSN27005513 22 COSMIC
COSN30510475 33 COSMIC
COSN14392752 80 COSMIC
COSN31598790 134 COSMIC
COSN22441726 137 COSMIC
COSN31529002 311 COSMIC
COSN31539760 312 COSMIC
COSN31573076 313 COSMIC
COSN31529266 314 COSMIC
COSN31544395 349 COSMIC
COSN30539824 442 COSMIC
COSN2323303 447 COSMIC
COSN20106196 723 COSMIC
COSN6390529 998 COSMIC
COSN9283261 1004 COSMIC
COSN9283260 1151 COSMIC
COSN6390528 1231 COSMIC
COSN32213049 1310 COSMIC
COSN6390527 1431 COSMIC
COSN2323301 1484 COSMIC
COSN16447542 1880 COSMIC
COSN16181211 1881 COSMIC
COSN8582728 1929 COSMIC
COSN31518429 2098 COSMIC
COSN20831667 2224 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs769202485 1 dbSNP
rs747527176 2 dbSNP
rs780406941 7 dbSNP
rs758692924 14 dbSNP
rs1460462093 16 dbSNP
rs1415658901 17 dbSNP
rs746044862 19 dbSNP
rs374324471 22 dbSNP
rs757598933 23 dbSNP
rs753934910 24 dbSNP
rs764151047 25 dbSNP
rs773557887 33 dbSNP
rs756068721 34 dbSNP
rs752593639 36 dbSNP
rs767278801 37 dbSNP
rs759283583 38 dbSNP
rs201378593 39 dbSNP
rs1235613630 46 dbSNP
rs917041817 63 dbSNP
rs776111841 65 dbSNP
rs992487956 71 dbSNP
rs1473417414 75 dbSNP
rs184801425 76 dbSNP
rs961365002 80 dbSNP
rs1174366398 81 dbSNP
rs936992530 87 dbSNP
rs553513279 91 dbSNP
rs760296472 99 dbSNP
rs192991600 105 dbSNP
rs1309096720 107 dbSNP
rs1372806773 109 dbSNP
rs1403435804 111 dbSNP
rs537413067 121 dbSNP
rs1298796411 129 dbSNP
rs187897598 130 dbSNP
rs550814351 131 dbSNP
rs868430021 133 dbSNP
rs1336805585 137 dbSNP
rs1360106858 138 dbSNP
rs1477923043 142 dbSNP
rs1491178796 143 dbSNP
rs151008644 143 dbSNP
rs983337531 144 dbSNP
rs1238079033 147 dbSNP
rs1483932019 148 dbSNP
rs1353175691 149 dbSNP
rs1219937507 150 dbSNP
rs1307975224 151 dbSNP
rs955595973 170 dbSNP
rs1186438634 173 dbSNP
rs1293351643 177 dbSNP
rs866862017 181 dbSNP
rs143603489 182 dbSNP
rs141173742 187 dbSNP
rs1417311799 189 dbSNP
rs1032980575 190 dbSNP
rs1008869957 191 dbSNP
rs749633084 195 dbSNP
rs1362431105 197 dbSNP
rs1052999657 203 dbSNP
rs903077677 204 dbSNP
rs532212913 205 dbSNP
rs1344197375 214 dbSNP
rs1420542339 223 dbSNP
rs1422746788 224 dbSNP
rs935921374 228 dbSNP
rs1264633077 239 dbSNP
rs1488644804 243 dbSNP
rs1190434501 247 dbSNP
rs1259850326 250 dbSNP
rs1490477539 253 dbSNP
rs146553903 266 dbSNP
rs1214448672 267 dbSNP
rs1392636888 269 dbSNP
rs1443325304 272 dbSNP
rs1164615380 279 dbSNP
rs1369424601 280 dbSNP
rs184622618 281 dbSNP
rs1164669673 291 dbSNP
rs537266234 291 dbSNP
rs1385953199 297 dbSNP
rs1014488682 298 dbSNP
rs1320620915 306 dbSNP
rs1044247800 312 dbSNP
rs1055948878 313 dbSNP
rs898926214 313 dbSNP
rs937066611 313 dbSNP
rs948558395 314 dbSNP
rs1246659758 315 dbSNP
rs1037299377 319 dbSNP
rs1328743174 319 dbSNP
rs940385636 319 dbSNP
rs1249989663 329 dbSNP
rs529890022 336 dbSNP
rs144219714 339 dbSNP
rs1261438249 340 dbSNP
rs908786344 341 dbSNP
rs1257434706 347 dbSNP
rs983088960 355 dbSNP
rs1180077490 356 dbSNP
rs770336440 357 dbSNP
rs866659408 362 dbSNP
rs1159355499 370 dbSNP
rs544479358 378 dbSNP
rs575752504 382 dbSNP
rs759502967 386 dbSNP
rs1379762837 388 dbSNP
rs1397626619 395 dbSNP
rs1286223938 397 dbSNP
rs748349483 403 dbSNP
rs983690346 409 dbSNP
rs139606922 410 dbSNP
rs1383573402 417 dbSNP
rs967398775 418 dbSNP
rs1027902987 439 dbSNP
rs1014209212 446 dbSNP
rs974865068 446 dbSNP
rs1473089424 447 dbSNP
rs1182473420 449 dbSNP
rs746011310 452 dbSNP
rs1430988866 456 dbSNP
rs1174733120 461 dbSNP
rs964860443 468 dbSNP
rs1480639858 491 dbSNP
rs895724081 492 dbSNP
rs1019004165 507 dbSNP
rs1410162559 517 dbSNP
rs1191391139 519 dbSNP
rs1001787015 522 dbSNP
rs1365731256 523 dbSNP
rs1218779510 526 dbSNP
rs1302061347 528 dbSNP
rs755001479 530 dbSNP
rs1313956582 531 dbSNP
rs1203650229 533 dbSNP
rs898894829 534 dbSNP
rs1483601805 535 dbSNP
rs891758977 540 dbSNP
rs1037442907 541 dbSNP
rs1234299505 542 dbSNP
rs1262470042 545 dbSNP
rs1190208718 554 dbSNP
rs1425283137 556 dbSNP
rs1434351205 561 dbSNP
rs558888266 580 dbSNP
rs1166675760 591 dbSNP
rs1389446720 598 dbSNP
rs1430224375 613 dbSNP
rs1032081428 619 dbSNP
rs1309609392 627 dbSNP
rs545202864 628 dbSNP
rs940354352 631 dbSNP
rs1206986829 634 dbSNP
rs1294280781 638 dbSNP
rs573299760 645 dbSNP
rs145784269 647 dbSNP
rs904422036 649 dbSNP
rs1204611202 651 dbSNP
rs1051872495 652 dbSNP
rs1231144757 657 dbSNP
rs934228334 658 dbSNP
rs922859647 660 dbSNP
rs1220406686 661 dbSNP
rs1044361911 666 dbSNP
rs1246887082 668 dbSNP
rs1469450685 668 dbSNP
rs149824327 672 dbSNP
rs567479519 675 dbSNP
rs191290855 684 dbSNP
rs926011380 693 dbSNP
rs1411374982 694 dbSNP
rs1404496505 707 dbSNP
rs1056844909 709 dbSNP
rs1165784152 714 dbSNP
rs1351799918 715 dbSNP
rs978872876 719 dbSNP
rs967366577 725 dbSNP
rs1365940286 726 dbSNP
rs1437922958 726 dbSNP
rs34811555 729 dbSNP
rs386414933 729 dbSNP
rs10639606 730 dbSNP
rs2308190 730 dbSNP
rs939774388 734 dbSNP
rs913192392 738 dbSNP
rs1336478222 741 dbSNP
rs1206358294 742 dbSNP
rs1266940784 750 dbSNP
rs1464909516 752 dbSNP
rs1472364271 763 dbSNP
rs1182206993 768 dbSNP
rs537346178 771 dbSNP
rs1455837656 772 dbSNP
rs1158634474 777 dbSNP
rs1389502129 781 dbSNP
rs1168313126 789 dbSNP
rs1332816474 790 dbSNP
rs1248888219 807 dbSNP
rs1461378173 819 dbSNP
rs770683186 820 dbSNP
rs1340373556 836 dbSNP
rs1048534995 839 dbSNP
rs1286320343 843 dbSNP
rs993245420 850 dbSNP
rs1226202576 856 dbSNP
rs931005605 858 dbSNP
rs1329279831 862 dbSNP
rs1206348950 873 dbSNP
rs1276473003 874 dbSNP
rs920833458 882 dbSNP
rs1195324745 883 dbSNP
rs1422118147 884 dbSNP
rs187982894 885 dbSNP
rs1259374368 886 dbSNP
rs1184405660 888 dbSNP
rs1462847179 890 dbSNP
rs552135460 900 dbSNP
rs531978217 901 dbSNP
rs1034697945 910 dbSNP
rs779787171 911 dbSNP
rs1170882353 919 dbSNP
rs1402203263 920 dbSNP
rs1415553198 921 dbSNP
rs1315283986 926 dbSNP
rs912052862 927 dbSNP
rs987689464 943 dbSNP
rs1287371936 945 dbSNP
rs116009302 947 dbSNP
rs1015964663 954 dbSNP
rs1253595374 955 dbSNP
rs1031779321 957 dbSNP
rs183226363 962 dbSNP
rs1319384305 968 dbSNP
rs886199895 968 dbSNP
rs1000183440 970 dbSNP
rs1204149606 972 dbSNP
rs1252885436 973 dbSNP
rs1439775390 977 dbSNP
rs1196946203 992 dbSNP
rs771083260 995 dbSNP
rs758362762 997 dbSNP
rs1478368130 998 dbSNP
rs1452864232 1002 dbSNP
rs529925091 1003 dbSNP
rs78934180 1006 dbSNP
rs139886359 1007 dbSNP
rs1397017223 1015 dbSNP
rs1308999511 1016 dbSNP
rs1396848431 1022 dbSNP
rs150682677 1025 dbSNP
rs1321123097 1030 dbSNP
rs1330037973 1032 dbSNP
rs895615988 1033 dbSNP
rs1234348330 1036 dbSNP
rs1305605032 1037 dbSNP
rs1057361537 1051 dbSNP
rs1384640680 1053 dbSNP
rs1227480000 1055 dbSNP
rs566190371 1057 dbSNP
rs564996625 1059 dbSNP
rs1164316839 1060 dbSNP
rs1446604760 1062 dbSNP
rs1004090643 1065 dbSNP
rs1236590723 1068 dbSNP
rs942836000 1069 dbSNP
rs926146682 1072 dbSNP
rs1266892293 1076 dbSNP
rs1452294051 1094 dbSNP
rs886842415 1094 dbSNP
rs1195557689 1096 dbSNP
rs1438743115 1104 dbSNP
rs571702998 1105 dbSNP
rs1253168683 1106 dbSNP
rs145679706 1122 dbSNP
rs1359394598 1125 dbSNP
rs1456679077 1125 dbSNP
rs1290337107 1126 dbSNP
rs1389544023 1134 dbSNP
rs776789819 1135 dbSNP
rs1327328227 1146 dbSNP
rs1362313758 1148 dbSNP
rs1434301428 1149 dbSNP
rs1361058628 1158 dbSNP
rs1306611637 1160 dbSNP
rs7039333 1164 dbSNP
rs920929843 1180 dbSNP
rs140676796 1189 dbSNP
rs551929614 1189 dbSNP
rs1265134140 1196 dbSNP
rs1215702778 1198 dbSNP
rs913319711 1200 dbSNP
rs1039224978 1204 dbSNP
rs1189812437 1229 dbSNP
rs1264440346 1231 dbSNP
rs1330670787 1249 dbSNP
rs1422488709 1255 dbSNP
rs943614377 1255 dbSNP
rs1384955698 1263 dbSNP
rs1424186275 1266 dbSNP
rs1187266012 1271 dbSNP
rs1364895483 1277 dbSNP
rs1303763707 1291 dbSNP
rs117163461 1292 dbSNP
rs1385835122 1293 dbSNP
rs1378613730 1298 dbSNP
rs1289410162 1305 dbSNP
rs551882510 1317 dbSNP
rs1394128807 1330 dbSNP
rs1158191072 1332 dbSNP
rs988027046 1337 dbSNP
rs1470659784 1340 dbSNP
rs542702668 1341 dbSNP
rs1286628912 1342 dbSNP
rs1328632766 1347 dbSNP
rs924661003 1348 dbSNP
rs1263078006 1350 dbSNP
rs980027916 1358 dbSNP
rs963267200 1360 dbSNP
rs978859920 1364 dbSNP
rs1476364579 1366 dbSNP
rs968669023 1367 dbSNP
rs1256193047 1370 dbSNP
rs1022979880 1375 dbSNP
rs1472004589 1377 dbSNP
rs1225441441 1378 dbSNP
rs532705613 1381 dbSNP
rs1281572963 1389 dbSNP
rs1012956475 1393 dbSNP
rs1247618995 1396 dbSNP
rs1302132271 1399 dbSNP
rs960228924 1402 dbSNP
rs1204143152 1403 dbSNP
rs950475375 1407 dbSNP
rs1306459309 1420 dbSNP
rs1035638347 1426 dbSNP
rs565528767 1433 dbSNP
rs1030519889 1439 dbSNP
rs7038960 1440 dbSNP
rs1310461513 1441 dbSNP
rs1221465476 1444 dbSNP
rs1281622370 1448 dbSNP
rs1344717702 1451 dbSNP
rs1283839451 1461 dbSNP
rs1406750973 1469 dbSNP
rs7022431 1470 dbSNP
rs1203423118 1474 dbSNP
rs1018533076 1477 dbSNP
rs1480101676 1480 dbSNP
rs1177357088 1484 dbSNP
rs537382906 1484 dbSNP
rs578208909 1485 dbSNP
rs1007106546 1486 dbSNP
rs1048091629 1487 dbSNP
rs1175310313 1487 dbSNP
rs369465069 1488 dbSNP
rs1436419875 1496 dbSNP
rs995224144 1497 dbSNP
rs1166480489 1519 dbSNP
rs1369645653 1523 dbSNP
rs1443226287 1528 dbSNP
rs899623822 1533 dbSNP
rs1387433008 1542 dbSNP
rs1171117899 1543 dbSNP
rs1304867465 1550 dbSNP
rs1226731163 1554 dbSNP
rs1274376137 1568 dbSNP
rs1039339515 1569 dbSNP
rs1308389001 1573 dbSNP
rs1204804067 1576 dbSNP
rs763863155 1579 dbSNP
rs1054696223 1584 dbSNP
rs1487248376 1584 dbSNP
rs768930898 1584 dbSNP
rs1192452006 1600 dbSNP
rs1253620973 1602 dbSNP
rs904783473 1606 dbSNP
rs890688835 1610 dbSNP
rs1052034649 1611 dbSNP
rs946214590 1617 dbSNP
rs558142578 1625 dbSNP
rs1457517689 1627 dbSNP
rs1326654287 1630 dbSNP
rs190685437 1636 dbSNP
rs1297450096 1640 dbSNP
rs1363129061 1647 dbSNP
rs978808845 1650 dbSNP
rs1274754991 1651 dbSNP
rs1239809082 1656 dbSNP
rs775099701 1658 dbSNP
rs530393493 1659 dbSNP
rs927247505 1663 dbSNP
rs566306619 1666 dbSNP
rs991472189 1667 dbSNP
rs546760377 1676 dbSNP
rs562931430 1677 dbSNP
rs983231841 1678 dbSNP
rs1263576294 1682 dbSNP
rs770279366 1683 dbSNP
rs1165853179 1684 dbSNP
rs950638893 1685 dbSNP
rs567500665 1692 dbSNP
rs1455672048 1695 dbSNP
rs1320517877 1698 dbSNP
rs1346295147 1708 dbSNP
rs1433412298 1709 dbSNP
rs1282795319 1712 dbSNP
rs188825631 1719 dbSNP
rs1293490882 1730 dbSNP
rs1336362548 1731 dbSNP
rs1206262006 1733 dbSNP
rs1283542272 1749 dbSNP
rs1026765108 1766 dbSNP
rs1359810019 1771 dbSNP
rs574183027 1774 dbSNP
rs1235532070 1776 dbSNP
rs1269611644 1780 dbSNP
rs995337133 1788 dbSNP
rs1188959845 1794 dbSNP
rs1420250669 1796 dbSNP
rs1471678859 1798 dbSNP
rs1158064626 1799 dbSNP
rs1431578030 1800 dbSNP
rs976275097 1806 dbSNP
rs899573194 1815 dbSNP
rs879791601 1816 dbSNP
rs1008279389 1822 dbSNP
rs1332717876 1827 dbSNP
rs1375256449 1829 dbSNP
rs1415752197 1832 dbSNP
rs964493564 1833 dbSNP
rs528489284 1836 dbSNP
rs890814940 1837 dbSNP
rs183428008 1840 dbSNP
rs1226108660 1841 dbSNP
rs1278445960 1843 dbSNP
rs1407247826 1845 dbSNP
rs1225413498 1846 dbSNP
rs1052409085 1850 dbSNP
rs1485244120 1851 dbSNP
rs1211302879 1852 dbSNP
rs1464467391 1853 dbSNP
rs191525510 1855 dbSNP
rs1021907093 1863 dbSNP
rs903470984 1865 dbSNP
rs13300415 1868 dbSNP
rs1043245595 1872 dbSNP
rs1471179395 1876 dbSNP
rs1171385091 1877 dbSNP
rs1010390281 1879 dbSNP
rs1435795731 1880 dbSNP
rs947562491 1882 dbSNP
rs915987341 1883 dbSNP
rs991602948 1884 dbSNP
rs1475450726 1887 dbSNP
rs1243399666 1889 dbSNP
rs41278301 1892 dbSNP
rs1389330858 1896 dbSNP
rs1327706597 1906 dbSNP
rs1057304600 1910 dbSNP
rs928659051 1913 dbSNP
rs768924969 1914 dbSNP
rs1205348266 1915 dbSNP
rs41278299 1916 dbSNP
rs942061864 1920 dbSNP
rs1282220036 1921 dbSNP
rs1339748439 1924 dbSNP
rs1272197824 1925 dbSNP
rs909122333 1936 dbSNP
rs1026880091 1942 dbSNP
rs71504531 1944 dbSNP
rs1251480600 1947 dbSNP
rs1439688008 1948 dbSNP
rs983364207 1962 dbSNP
rs780128661 1966 dbSNP
rs186280639 1967 dbSNP
rs559318139 1970 dbSNP
rs1452127189 1972 dbSNP
rs1383814626 1976 dbSNP
rs1167005340 1979 dbSNP
rs1396739827 1980 dbSNP
rs1339027886 1981 dbSNP
rs1440459021 1984 dbSNP
rs1354374737 1986 dbSNP
rs1171711045 1988 dbSNP
rs2840246 1989 dbSNP
rs1420981198 1990 dbSNP
rs964787958 1992 dbSNP
rs1305486812 1995 dbSNP
rs1324511369 1998 dbSNP
rs1226397261 1999 dbSNP
rs1443572818 2000 dbSNP
rs147346447 2015 dbSNP
rs563408281 2019 dbSNP
rs182245071 2025 dbSNP
rs578077580 2026 dbSNP
rs1205082486 2030 dbSNP
rs1439513323 2034 dbSNP
rs557406771 2039 dbSNP
rs999638177 2039 dbSNP
rs567349895 2046 dbSNP
rs1373358030 2052 dbSNP
rs1332738802 2063 dbSNP
rs1245339174 2066 dbSNP
rs1162287671 2067 dbSNP
rs1393137743 2068 dbSNP
rs1021883906 2070 dbSNP
rs1010867516 2071 dbSNP
rs1382683625 2076 dbSNP
rs1381508383 2078 dbSNP
rs1222335534 2081 dbSNP
rs1327916684 2082 dbSNP
rs956323942 2082 dbSNP
rs1292856177 2085 dbSNP
rs1335593999 2086 dbSNP
rs1373018206 2089 dbSNP
rs1802995 2094 dbSNP
rs1266841991 2097 dbSNP
rs1036239696 2098 dbSNP
rs903419063 2104 dbSNP
rs1441011234 2115 dbSNP
rs1003063646 2120 dbSNP
rs142716776 2135 dbSNP
rs1444935438 2160 dbSNP
rs1475283641 2164 dbSNP
rs75994273 2165 dbSNP
rs764341061 2169 dbSNP
rs1361491854 2176 dbSNP
rs1452978975 2177 dbSNP
rs1011725171 2183 dbSNP
rs1006171657 2192 dbSNP
rs887816480 2193 dbSNP
rs1047725034 2194 dbSNP
rs1356320007 2196 dbSNP
rs929178444 2199 dbSNP
rs1385381150 2209 dbSNP
rs1304963702 2220 dbSNP
rs923223585 2221 dbSNP
rs757031986 2222 dbSNP
rs1240428865 2229 dbSNP
rs138716946 2236 dbSNP
rs1346229121 2240 dbSNP
rs1210603710 2247 dbSNP
rs938771001 2257 dbSNP
rs1256452160 2265 dbSNP
rs910289001 2266 dbSNP
rs72739646 2273 dbSNP
rs1417956874 2274 dbSNP
rs552987048 2275 dbSNP
rs1177582933 2282 dbSNP
rs536217617 2288 dbSNP
rs143979782 2290 dbSNP
rs956467830 2303 dbSNP
rs1035971934 2308 dbSNP
rs550648380 2317 dbSNP
rs1003441794 2319 dbSNP
rs970236335 2323 dbSNP
rs973977893 2325 dbSNP
rs963806270 2330 dbSNP
rs1309863912 2336 dbSNP
rs1490526957 2339 dbSNP
rs1234121865 2340 dbSNP
rs1006222055 2344 dbSNP
rs1294098636 2346 dbSNP
rs887868549 2351 dbSNP
rs1249226318 2352 dbSNP
rs41278297 2357 dbSNP
rs75668063 2360 dbSNP
rs1240020644 2364 dbSNP
rs1452508797 2374 dbSNP
rs1192867084 2388 dbSNP
rs901739774 2392 dbSNP
rs955149058 2393 dbSNP
rs1168666409 2394 dbSNP
rs1354146895 2394 dbSNP
rs1462623363 2398 dbSNP
rs1299977299 2400 dbSNP
rs1368809965 2404 dbSNP
rs1440855455 2404 dbSNP
rs1304752192 2410 dbSNP
rs1373695070 2412 dbSNP
rs1213152095 2416 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 9925.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ugUGAG-AUUUCCCU-UCGUGAAACa 5'
            | || ||||   |  |||||||| 
Target 5' gcAGUCAUAAA--CACUGCACUUUGg 3'
5 - 28
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ugUGAG-AUUUCCCU-UCGUGAAACa 5'
            | || ||||   |  |||||||| 
Target 5' gcAGUCAUAAA--CACUGCACUUUGg 3'
5 - 28
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
Experimental Support 3 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HCT116
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in ERX177599. RNA binding protein: AGO2. Condition:p53_D_AGO_CLIP_2_1 PAR-CLIP data was present in ERX177603. RNA binding protein: AGO2. Condition:p53_D_AGO_CLIP_2_5 PAR-CLIP data was present in ERX177605. RNA binding protein: AGO2. Condition:KO_D_AGO_CLIP_2_7 PAR-CLIP data was present in ERX177606. RNA binding protein: AGO2. Condition:KO_V_AGO_CLIP_2_8 PAR-CLIP data was present in ERX177607. RNA binding protein: AGO2. Condition:p53_D_AGO_CLIP_2_9 PAR-CLIP data was present in ERX177611. RNA binding protein: AGO2. Condition:p53_D_AGO_CLIP_3_1 PAR-CLIP data was present in ERX177615. RNA binding protein: AGO2. Condition:p53_D_AGO_CLIP_3_5 PAR-CLIP data was present in ERX177617. RNA binding protein: AGO2. Condition:KO_D_AGO_CLIP_3_7 PAR-CLIP data was present in ERX177618. RNA binding protein: AGO2. Condition:KO_V_AGO_CLIP_3_8 PAR-CLIP data was present in ERX177619. RNA binding protein: AGO2. Condition:p53_D_AGO_CLIP_3_9 PAR-CLIP data was present in ERX177623. RNA binding protein: AGO2. Condition:p53_D_AGO_CLIP_4_1 PAR-CLIP data was present in ERX177627. RNA binding protein: AGO2. Condition:p53_D_AGO_CLIP_4_5 PAR-CLIP data was present in ERX177629. RNA binding protein: AGO2. Condition:KO_D_AGO_CLIP_4_7 PAR-CLIP data was present in ERX177630. RNA binding protein: AGO2. Condition:KO_V_AGO_CLIP_4_8 PAR-CLIP data was present in ERX177631. RNA binding protein: AGO2. Condition:p53_D_AGO_CLIP_4_9 PAR-CLIP data was present in ERX177633. RNA binding protein: AGO2. Condition:KO_D_AGO_CLIP_4_11 ...

- Krell J; Stebbing J; Carissimi C; Dabrowska et al., 2016, Genome research.

Article - Krell J; Stebbing J; Carissimi C; Dabrowska et al.
- Genome research, 2016
DNA damage activates TP53-regulated surveillance mechanisms that are crucial in suppressing tumorigenesis. TP53 orchestrates these responses directly by transcriptionally modulating genes, including microRNAs (miRNAs), and by regulating miRNA biogenesis through interacting with the DROSHA complex. However, whether the association between miRNAs and AGO2 is regulated following DNA damage is not yet known. Here, we show that, following DNA damage, TP53 interacts with AGO2 to induce or reduce AGO2's association of a subset of miRNAs, including multiple let-7 family members. Furthermore, we show that specific mutations in TP53 decrease rather than increase the association of let-7 family miRNAs, reducing their activity without preventing TP53 from interacting with AGO2. This is consistent with the oncogenic properties of these mutants. Using AGO2 RIP-seq and PAR-CLIP-seq, we show that the DNA damage-induced increase in binding of let-7 family members to the RISC complex is functional. We unambiguously determine the global miRNA-mRNA interaction networks involved in the DNA damage response, validating them through the identification of miRNA-target chimeras formed by endogenous ligation reactions. We find that the target complementary region of the let-7 seed tends to have highly fixed positions and more variable ones. Additionally, we observe that miRNAs, whose cellular abundance or differential association with AGO2 is regulated by TP53, are involved in an intricate network of regulatory feedback and feedforward circuits. TP53-mediated regulation of AGO2-miRNA interaction represents a new mechanism of miRNA regulation in carcinogenesis.
LinkOut: [PMID: 26701625]
CLIP-seq Support 1 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000307750.4 | 3UTR | AUUUGCAGUCAUAAACACUGCACUUUGGUGCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000307750.4 | 3UTR | AUUUGCAGUCAUAAACACUGCACUUUGGUGCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
BRCA -0.329 0.13 -0.473 0.04 14 Click to see details
HNSC 0.332 0.23 0.107 0.41 7 Click to see details
LIHC -0.16 0.45 -0.500 0.33 3 Click to see details
LIHC -0.16 0.45 -0.500 0.33 3 Click to see details
LIHC -0.16 0.45 -0.500 0.33 3 Click to see details
LIHC -0.16 0.45 -0.500 0.33 3 Click to see details
362 hsa-miR-520g-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT004276 VEGFA vascular endothelial growth factor A 2 1
MIRT061377 WEE1 WEE1 G2 checkpoint kinase 2 2
MIRT070863 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 4
MIRT074319 TNRC6A trinucleotide repeat containing 6A 2 4
MIRT081126 LDLR low density lipoprotein receptor 2 6
MIRT093444 MSMO1 methylsterol monooxygenase 1 2 2
MIRT103397 CBX3 chromobox 3 2 2
MIRT107536 VLDLR very low density lipoprotein receptor 2 2
MIRT109624 KLHL15 kelch like family member 15 2 4
MIRT119717 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT130126 TXNIP thioredoxin interacting protein 2 2
MIRT133699 SKI SKI proto-oncogene 2 2
MIRT140155 SPRED1 sprouty related EVH1 domain containing 1 2 2
MIRT153990 PRNP prion protein 2 2
MIRT161898 FXR1 FMR1 autosomal homolog 1 2 2
MIRT164670 WHSC1 nuclear receptor binding SET domain protein 2 2 4
MIRT178073 SAMD8 sterile alpha motif domain containing 8 2 2
MIRT193026 TMOD3 tropomodulin 3 2 2
MIRT216879 MSH3 mutS homolog 3 2 2
MIRT230977 PRRG4 proline rich and Gla domain 4 2 2
MIRT242752 FNBP1L formin binding protein 1 like 2 2
MIRT249018 PABPC3 poly(A) binding protein cytoplasmic 3 2 8
MIRT254769 XRCC6 X-ray repair cross complementing 6 2 6
MIRT266862 SLC25A44 solute carrier family 25 member 44 2 2
MIRT275453 TMPO thymopoietin 2 2
MIRT285530 CDT1 chromatin licensing and DNA replication factor 1 2 2
MIRT286959 SOCS7 suppressor of cytokine signaling 7 2 2
MIRT301219 SH3BP4 SH3 domain binding protein 4 2 2
MIRT325706 CSTF2 cleavage stimulation factor subunit 2 2 2
MIRT437832 SMAD7 SMAD family member 7 3 1
MIRT442639 TBC1D12 TBC1 domain family member 12 2 2
MIRT443433 MAPT microtubule associated protein tau 2 2
MIRT446289 RIMKLB ribosomal modification protein rimK like family member B 2 2
MIRT447962 WDR77 WD repeat domain 77 2 2
MIRT454271 PSMA1 proteasome subunit alpha 1 2 2
MIRT454809 NEDD9 neural precursor cell expressed, developmentally down-regulated 9 2 2
MIRT456031 CRYZ crystallin zeta 2 8
MIRT462068 CCDC77 coiled-coil domain containing 77 2 4
MIRT463549 ZBTB5 zinc finger and BTB domain containing 5 2 4
MIRT470351 PPP2R5E protein phosphatase 2 regulatory subunit B'epsilon 2 2
MIRT474452 KLHL11 kelch like family member 11 2 10
MIRT476644 G2E3 G2/M-phase specific E3 ubiquitin protein ligase 2 2
MIRT481110 B2M beta-2-microglobulin 2 2
MIRT481790 APEX1 apurinic/apyrimidinic endodeoxyribonuclease 1 2 2
MIRT482106 AKT3 AKT serine/threonine kinase 3 2 4
MIRT482526 ACTB actin beta 2 4
MIRT485571 FOXQ1 forkhead box Q1 2 2
MIRT486010 LPAR2 lysophosphatidic acid receptor 2 2 2
MIRT493607 HMGB3 high mobility group box 3 2 6
MIRT495181 MUC20 mucin 20, cell surface associated 2 2
MIRT496046 MORC1 MORC family CW-type zinc finger 1 2 2
MIRT496734 TRIM31 tripartite motif containing 31 2 2
MIRT497421 FAM46A family with sequence similarity 46 member A 2 2
MIRT497493 RGS17 regulator of G protein signaling 17 2 2
MIRT497751 OXGR1 oxoglutarate receptor 1 2 2
MIRT498355 ABHD17B abhydrolase domain containing 17B 2 2
MIRT501454 PTPN4 protein tyrosine phosphatase, non-receptor type 4 2 8
MIRT501584 PLEKHA1 pleckstrin homology domain containing A1 2 10
MIRT501781 NRBF2 nuclear receptor binding factor 2 2 6
MIRT506503 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 2 2
MIRT507414 ELK4 ELK4, ETS transcription factor 2 2
MIRT508557 CEP72 centrosomal protein 72 2 4
MIRT508726 ZNF682 zinc finger protein 682 2 4
MIRT508762 IPP intracisternal A particle-promoted polypeptide 2 2
MIRT508818 GPR155 G protein-coupled receptor 155 2 2
MIRT509112 BMP8B bone morphogenetic protein 8b 2 6
MIRT509273 NPM3 nucleophosmin/nucleoplasmin 3 2 6
MIRT511537 HMGB1 high mobility group box 1 2 6
MIRT514118 SERF2 small EDRK-rich factor 2 2 2
MIRT514302 FXYD5 FXYD domain containing ion transport regulator 5 2 6
MIRT514962 SIGLEC11 sialic acid binding Ig like lectin 11 2 2
MIRT515557 TMEM134 transmembrane protein 134 2 2
MIRT516042 MED18 mediator complex subunit 18 2 2
MIRT516540 MIXL1 Mix paired-like homeobox 2 2
MIRT516992 COX19 COX19, cytochrome c oxidase assembly factor 2 4
MIRT517169 SLC28A1 solute carrier family 28 member 1 2 2
MIRT517242 PRIM1 DNA primase subunit 1 2 4
MIRT517722 KIF1C kinesin family member 1C 2 2
MIRT517797 EFCAB11 EF-hand calcium binding domain 11 2 4
MIRT517997 SLC16A13 solute carrier family 16 member 13 2 2
MIRT518033 ABHD15 abhydrolase domain containing 15 2 4
MIRT518843 NEK8 NIMA related kinase 8 2 2
MIRT518874 NKD1 naked cuticle homolog 1 2 2
MIRT520138 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT521531 QSOX1 quiescin sulfhydryl oxidase 1 2 4
MIRT522855 KIAA1551 KIAA1551 2 2
MIRT522976 INTU inturned planar cell polarity protein 2 2
MIRT523064 HYPK huntingtin interacting protein K 2 2
MIRT523421 GPR157 G protein-coupled receptor 157 2 2
MIRT524077 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT524277 CYCS cytochrome c, somatic 2 2
MIRT524326 CRLF3 cytokine receptor like factor 3 2 4
MIRT524374 CREB1 cAMP responsive element binding protein 1 2 2
MIRT524439 CNKSR3 CNKSR family member 3 2 2
MIRT524756 BCL2L2 BCL2 like 2 2 2
MIRT526621 NME6 NME/NM23 nucleoside diphosphate kinase 6 2 2
MIRT529610 H1F0 H1 histone family member 0 2 2
MIRT529984 TNFAIP8L1 TNF alpha induced protein 8 like 1 2 6
MIRT530605 C7orf33 chromosome 7 open reading frame 33 2 4
MIRT531759 TXK TXK tyrosine kinase 2 4
MIRT532031 FHDC1 FH2 domain containing 1 2 2
MIRT532107 RRP8 ribosomal RNA processing 8 2 2
MIRT532920 ZNF385A zinc finger protein 385A 2 2
MIRT533005 ZFHX3 zinc finger homeobox 3 2 4
MIRT533102 YOD1 YOD1 deubiquitinase 2 2
MIRT534262 SLC12A7 solute carrier family 12 member 7 2 2
MIRT534458 SCML2 Scm polycomb group protein like 2 2 4
MIRT534982 PRR11 proline rich 11 2 2
MIRT536679 IKZF5 IKAROS family zinc finger 5 2 2
MIRT537431 FBXL7 F-box and leucine rich repeat protein 7 2 2
MIRT538035 DNAJB6 DnaJ heat shock protein family (Hsp40) member B6 2 2
MIRT539717 EIF3H eukaryotic translation initiation factor 3 subunit H 2 2
MIRT540260 FAM89A family with sequence similarity 89 member A 2 2
MIRT540372 MASTL microtubule associated serine/threonine kinase like 2 2
MIRT540519 CXCL10 C-X-C motif chemokine ligand 10 2 2
MIRT540651 ZNF514 zinc finger protein 514 2 2
MIRT540921 KCNA7 potassium voltage-gated channel subfamily A member 7 2 2
MIRT541156 PABPC1 poly(A) binding protein cytoplasmic 1 2 4
MIRT541745 ZC3HAV1 zinc finger CCCH-type containing, antiviral 1 2 2
MIRT542029 PEX2 peroxisomal biogenesis factor 2 2 2
MIRT542036 PTRF caveolae associated protein 1 2 2
MIRT542127 DIS3L DIS3 like exosome 3'-5' exoribonuclease 2 2
MIRT542252 HSPA4L heat shock protein family A (Hsp70) member 4 like 2 2
MIRT542354 MED16 mediator complex subunit 16 2 2
MIRT542466 AKR7A2 aldo-keto reductase family 7 member A2 2 2
MIRT542505 WDR13 WD repeat domain 13 2 2
MIRT542712 RPS15A ribosomal protein S15a 2 2
MIRT542958 FOXK1 forkhead box K1 2 2
MIRT543179 FICD FIC domain containing 2 2
MIRT552884 WASL Wiskott-Aldrich syndrome like 2 4
MIRT554997 RAB39B RAB39B, member RAS oncogene family 2 2
MIRT555187 PRUNE2 prune homolog 2 2 2
MIRT555236 PRICKLE2 prickle planar cell polarity protein 2 2 2
MIRT555451 POLR3A RNA polymerase III subunit A 2 2
MIRT557811 FOXO1 forkhead box O1 2 4
MIRT558161 ELAVL2 ELAV like RNA binding protein 2 2 2
MIRT558753 CHERP calcium homeostasis endoplasmic reticulum protein 2 2
MIRT558765 CFL2 cofilin 2 2 2
MIRT559114 C16orf52 chromosome 16 open reading frame 52 2 2
MIRT561823 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 2
MIRT562486 CELSR3 cadherin EGF LAG seven-pass G-type receptor 3 2 2
MIRT566139 RACGAP1 Rac GTPase activating protein 1 2 2
MIRT566951 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT566965 LBR lamin B receptor 2 2
MIRT567845 DCAF8 DDB1 and CUL4 associated factor 8 2 2
MIRT568209 CAV1 caveolin 1 2 2
MIRT568398 ATF7IP activating transcription factor 7 interacting protein 2 2
MIRT569177 DMD dystrophin 2 2
MIRT570687 FZD5 frizzled class receptor 5 2 2
MIRT572245 ANP32E acidic nuclear phosphoprotein 32 family member E 2 2
MIRT572662 AGMAT agmatinase 2 4
MIRT575209 Piwil2 piwi-like RNA-mediated gene silencing 2 2 5
MIRT575985 Fem1a feminization 1 homolog a (C. elegans) 2 5
MIRT606843 FEM1A fem-1 homolog A 2 7
MIRT608364 PIWIL2 piwi like RNA-mediated gene silencing 2 2 7
MIRT608734 MYH9 myosin heavy chain 9 2 2
MIRT612598 RANGAP1 Ran GTPase activating protein 1 2 2
MIRT614247 WDR53 WD repeat domain 53 2 4
MIRT615162 SPIB Spi-B transcription factor 2 2
MIRT615467 BNC2 basonuclin 2 2 2
MIRT615812 COQ7 coenzyme Q7, hydroxylase 2 2
MIRT619490 QSOX2 quiescin sulfhydryl oxidase 2 2 2
MIRT619825 POLM DNA polymerase mu 2 4
MIRT623527 KCNK10 potassium two pore domain channel subfamily K member 10 2 2
MIRT624353 CHRM3 cholinergic receptor muscarinic 3 2 2
MIRT625978 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT626207 PNRC1 proline rich nuclear receptor coactivator 1 2 4
MIRT626915 HIST1H2BG histone cluster 1 H2B family member g 2 2
MIRT628563 MELK maternal embryonic leucine zipper kinase 2 2
MIRT630116 PNPLA3 patatin like phospholipase domain containing 3 2 2
MIRT631328 CARHSP1 calcium regulated heat stable protein 1 2 2
MIRT631514 TTC4 tetratricopeptide repeat domain 4 2 2
MIRT633106 CBX5 chromobox 5 2 2
MIRT634084 APOH apolipoprotein H 2 2
MIRT634644 HIP1 huntingtin interacting protein 1 2 4
MIRT634941 GTF2H2C GTF2H2 family member C 2 4
MIRT639434 PKP1 plakophilin 1 2 2
MIRT640365 C1orf210 chromosome 1 open reading frame 210 2 2
MIRT640717 CEP68 centrosomal protein 68 2 2
MIRT641216 TRIB1 tribbles pseudokinase 1 2 4
MIRT642272 SMIM17 small integral membrane protein 17 2 2
MIRT644010 PPP1R3G protein phosphatase 1 regulatory subunit 3G 2 2
MIRT645145 CUBN cubilin 2 2
MIRT645199 POLR3F RNA polymerase III subunit F 2 2
MIRT653159 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT654474 RANBP2 RAN binding protein 2 2 2
MIRT656176 MRPL44 mitochondrial ribosomal protein L44 2 2
MIRT658856 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT662111 LACTB lactamase beta 2 2
MIRT662393 ICA1L islet cell autoantigen 1 like 2 4
MIRT663405 SYT17 synaptotagmin 17 2 2
MIRT663852 LEPROTL1 leptin receptor overlapping transcript like 1 2 2
MIRT663934 ZNF554 zinc finger protein 554 2 2
MIRT664214 LSM3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated 2 2
MIRT664379 CYB5A cytochrome b5 type A 2 2
MIRT672156 PLEKHH1 pleckstrin homology, MyTH4 and FERM domain containing H1 2 2
MIRT673120 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT676082 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT676772 SNX2 sorting nexin 2 2 2
MIRT677106 MFSD11 major facilitator superfamily domain containing 11 2 4
MIRT677142 DEGS1 delta 4-desaturase, sphingolipid 1 2 2
MIRT677247 C15orf40 chromosome 15 open reading frame 40 2 2
MIRT677591 PIK3C2A phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha 2 2
MIRT678311 NPHS1 NPHS1, nephrin 2 2
MIRT678528 P2RX7 purinergic receptor P2X 7 2 2
MIRT678732 SRCAP Snf2 related CREBBP activator protein 2 2
MIRT679619 RRP36 ribosomal RNA processing 36 2 2
MIRT680134 ADRBK2 G protein-coupled receptor kinase 3 2 2
MIRT680358 GATAD1 GATA zinc finger domain containing 1 2 4
MIRT680685 ZNF785 zinc finger protein 785 2 2
MIRT681824 N4BP2L2 NEDD4 binding protein 2 like 2 2 2
MIRT683315 C19orf40 Fanconi anemia core complex associated protein 24 1 1
MIRT683384 ESR2 estrogen receptor 2 2 2
MIRT683490 ZNF7 zinc finger protein 7 2 2
MIRT683522 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT683687 MICA MHC class I polypeptide-related sequence A 2 2
MIRT683871 OCIAD1 OCIA domain containing 1 2 2
MIRT683942 MYLK3 myosin light chain kinase 3 2 2
MIRT683973 QRFPR pyroglutamylated RFamide peptide receptor 2 2
MIRT684048 FOLR1 folate receptor 1 2 2
MIRT684078 TLR7 toll like receptor 7 2 2
MIRT684130 CEP104 centrosomal protein 104 2 2
MIRT684356 BCAS4 breast carcinoma amplified sequence 4 2 2
MIRT684489 GPR137B G protein-coupled receptor 137B 2 2
MIRT684570 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT684613 GTF2IRD2B GTF2I repeat domain containing 2B 2 2
MIRT684645 PDE4C phosphodiesterase 4C 2 2
MIRT684709 LRRD1 leucine rich repeats and death domain containing 1 2 2
MIRT684740 DNAJB13 DnaJ heat shock protein family (Hsp40) member B13 2 2
MIRT684783 MYO1F myosin IF 2 2
MIRT684917 CD28 CD28 molecule 2 2
MIRT685193 DCTN5 dynactin subunit 5 2 2
MIRT685242 F2RL1 F2R like trypsin receptor 1 2 2
MIRT685312 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT685349 CCL5 C-C motif chemokine ligand 5 2 2
MIRT685574 KCNK6 potassium two pore domain channel subfamily K member 6 2 2
MIRT685630 C12orf49 chromosome 12 open reading frame 49 2 2
MIRT685658 C11orf1 chromosome 11 open reading frame 1 2 2
MIRT685707 BHMT2 betaine--homocysteine S-methyltransferase 2 2 2
MIRT685737 C12orf65 chromosome 12 open reading frame 65 2 2
MIRT685779 ZNF426 zinc finger protein 426 2 2
MIRT685879 RTN2 reticulon 2 2 2
MIRT685951 PTGIS prostaglandin I2 synthase 2 2
MIRT686103 TNIP3 TNFAIP3 interacting protein 3 2 2
MIRT686152 HS3ST1 heparan sulfate-glucosamine 3-sulfotransferase 1 2 2
MIRT686281 WWC1 WW and C2 domain containing 1 2 2
MIRT686319 VPS53 VPS53, GARP complex subunit 2 2
MIRT686359 USP15 ubiquitin specific peptidase 15 2 2
MIRT686388 UBE2V2 ubiquitin conjugating enzyme E2 V2 2 2
MIRT686440 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT686523 TRAF3IP2 TRAF3 interacting protein 2 2 2
MIRT686692 TIMM10 translocase of inner mitochondrial membrane 10 2 2
MIRT686823 SLC7A11 solute carrier family 7 member 11 2 2
MIRT686879 SLC1A5 solute carrier family 1 member 5 2 2
MIRT686912 SGTB small glutamine rich tetratricopeptide repeat containing beta 2 2
MIRT687042 RNF115 ring finger protein 115 2 2
MIRT687075 RABGAP1L RAB GTPase activating protein 1 like 2 2
MIRT687250 PDHB pyruvate dehydrogenase E1 beta subunit 2 2
MIRT687401 NSUN4 NOP2/Sun RNA methyltransferase family member 4 2 2
MIRT687498 NFATC2IP nuclear factor of activated T-cells 2 interacting protein 2 2
MIRT687645 LRIF1 ligand dependent nuclear receptor interacting factor 1 2 2
MIRT687856 ISCA2 iron-sulfur cluster assembly 2 2 2
MIRT687927 HOOK3 hook microtubule tethering protein 3 2 2
MIRT687979 GTF2IRD2 GTF2I repeat domain containing 2 2 2
MIRT688110 GK5 glycerol kinase 5 (putative) 2 2
MIRT688121 GEMIN8 gem nuclear organelle associated protein 8 2 2
MIRT688213 FKBP14 FK506 binding protein 14 2 2
MIRT688270 FAM213A family with sequence similarity 213 member A 2 2
MIRT688465 DNAJB4 DnaJ heat shock protein family (Hsp40) member B4 2 2
MIRT688503 DDI2 DNA damage inducible 1 homolog 2 2 2
MIRT688633 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT688676 CPT1A carnitine palmitoyltransferase 1A 2 2
MIRT688826 CAPZA2 capping actin protein of muscle Z-line alpha subunit 2 2 2
MIRT689122 ZBTB25 zinc finger and BTB domain containing 25 2 2
MIRT689170 ZNF665 zinc finger protein 665 2 2
MIRT689795 GTF2H3 general transcription factor IIH subunit 3 2 2
MIRT689842 HIST1H2BJ histone cluster 1 H2B family member j 2 2
MIRT690364 RPL37A ribosomal protein L37a 2 2
MIRT690736 IRAK4 interleukin 1 receptor associated kinase 4 2 2
MIRT690982 ZNF578 zinc finger protein 578 2 2
MIRT691073 NUGGC nuclear GTPase, germinal center associated 2 2
MIRT691328 KIAA1841 KIAA1841 2 2
MIRT691493 FOXRED2 FAD dependent oxidoreductase domain containing 2 2 2
MIRT691575 CCDC125 coiled-coil domain containing 125 2 2
MIRT692069 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT692105 CXorf38 chromosome X open reading frame 38 2 4
MIRT692209 NOL9 nucleolar protein 9 2 2
MIRT692319 RFK riboflavin kinase 2 2
MIRT692380 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT692441 METTL8 methyltransferase like 8 2 2
MIRT692542 PARD3 par-3 family cell polarity regulator 2 2
MIRT692605 GDF5OS growth differentiation factor 5 opposite strand 2 2
MIRT692786 SYNPO2L synaptopodin 2 like 2 2
MIRT692816 C1orf50 chromosome 1 open reading frame 50 2 2
MIRT692877 RBM41 RNA binding motif protein 41 2 2
MIRT692988 LGSN lengsin, lens protein with glutamine synthetase domain 2 2
MIRT693195 MKI67 marker of proliferation Ki-67 2 2
MIRT693350 RNF34 ring finger protein 34 2 2
MIRT694107 ZNF446 zinc finger protein 446 2 2
MIRT694194 ZNF347 zinc finger protein 347 2 2
MIRT694661 C14orf119 chromosome 14 open reading frame 119 2 2
MIRT694815 STX4 syntaxin 4 2 2
MIRT694935 ANKS4B ankyrin repeat and sterile alpha motif domain containing 4B 2 2
MIRT695181 SLC25A33 solute carrier family 25 member 33 2 2
MIRT695617 VBP1 VHL binding protein 1 2 2
MIRT695661 MAN2B2 mannosidase alpha class 2B member 2 2 2
MIRT695832 ABCG8 ATP binding cassette subfamily G member 8 2 2
MIRT695923 ZNF174 zinc finger protein 174 2 2
MIRT695973 EIF2B2 eukaryotic translation initiation factor 2B subunit beta 2 2
MIRT696184 GNB5 G protein subunit beta 5 2 2
MIRT696444 SUGP1 SURP and G-patch domain containing 1 2 2
MIRT696861 UBOX5 U-box domain containing 5 2 2
MIRT696905 C14orf105 coiled-coil domain containing 198 2 2
MIRT697247 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697392 ZMAT3 zinc finger matrin-type 3 2 2
MIRT697984 TSPAN6 tetraspanin 6 2 2
MIRT698331 TMEM127 transmembrane protein 127 2 2
MIRT699267 SLC6A4 solute carrier family 6 member 4 2 2
MIRT699318 SLC35F5 solute carrier family 35 member F5 2 4
MIRT699634 SH3BP5 SH3 domain binding protein 5 2 2
MIRT699697 SF3B3 splicing factor 3b subunit 3 2 2
MIRT699768 SEMA4D semaphorin 4D 2 2
MIRT700047 RPL14 ribosomal protein L14 2 2
MIRT700104 RNF19B ring finger protein 19B 2 2
MIRT701110 PAPD5 poly(A) RNA polymerase D5, non-canonical 2 2
MIRT701296 NUDT3 nudix hydrolase 3 2 2
MIRT702050 METTL21A methyltransferase like 21A 2 2
MIRT702088 MCFD2 multiple coagulation factor deficiency 2 2 2
MIRT702381 KLF10 Kruppel like factor 10 2 2
MIRT702526 KCND3 potassium voltage-gated channel subfamily D member 3 2 2
MIRT702582 JARID2 jumonji and AT-rich interaction domain containing 2 2 2
MIRT702945 HIPK3 homeodomain interacting protein kinase 3 2 2
MIRT703093 GPRIN3 GPRIN family member 3 2 2
MIRT704010 EFCAB14 EF-hand calcium binding domain 14 2 2
MIRT704112 DRAXIN dorsal inhibitory axon guidance protein 2 2
MIRT704147 DNAL1 dynein axonemal light chain 1 2 2
MIRT704197 LDHD lactate dehydrogenase D 2 2
MIRT704445 CTNNB1 catenin beta 1 2 2
MIRT704764 CDKN2AIPNL CDKN2A interacting protein N-terminal like 2 2
MIRT705084 C4orf29 abhydrolase domain containing 18 2 2
MIRT705350 ATP1B3 ATPase Na+/K+ transporting subunit beta 3 2 2
MIRT706108 ENTPD4 ectonucleoside triphosphate diphosphohydrolase 4 2 2
MIRT706278 SLC35F6 solute carrier family 35 member F6 2 2
MIRT706313 CCDC30 coiled-coil domain containing 30 2 2
MIRT706353 STAC2 SH3 and cysteine rich domain 2 2 2
MIRT706403 HAS2 hyaluronan synthase 2 2 2
MIRT706516 MTMR9 myotubularin related protein 9 2 2
MIRT707828 TMEM133 transmembrane protein 133 2 2
MIRT708370 CDIPT CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 2
MIRT708450 MAPKAPK5 mitogen-activated protein kinase-activated protein kinase 5 2 2
MIRT708513 CHCHD3 coiled-coil-helix-coiled-coil-helix domain containing 3 2 2
MIRT709074 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT709507 RHOH ras homolog family member H 2 2
MIRT709539 ZBED1 zinc finger BED-type containing 1 2 2
MIRT711774 RFXAP regulatory factor X associated protein 2 2
MIRT714309 ZNF454 zinc finger protein 454 2 2
MIRT719073 ACOX1 acyl-CoA oxidase 1 2 2
MIRT719105 PCYT1A phosphate cytidylyltransferase 1, choline, alpha 2 2
MIRT719420 B4GALNT3 beta-1,4-N-acetyl-galactosaminyltransferase 3 2 2
MIRT722311 DHCR24 24-dehydrocholesterol reductase 2 2
MIRT724552 HAUS2 HAUS augmin like complex subunit 2 2 2
MIRT737294 MYO18B myosin XVIIIB 2 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-520g Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-mir-520g Androstenedione+Letrozole resistant cell line (MCF-7)
hsa-miR-520g-3p Doxorubicin 31703 NSC123127 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-520g-3p Verapamil 2520 NSC272366 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-520g-3p Cisplatin 5460033 NSC119875 approved resistant High Germ Cell Tumor cell line (NTERA-2)
hsa-miR-520g-3p Cisplatin 5460033 NSC119875 approved resistant Low Epithelial Ovarian Cancer cell line (A2780)
hsa-miR-520g-3p Paclitaxel 36314 NSC125973 approved resistant Low Epithelial Ovarian Cancer cell line (A2780)
hsa-miR-520g-3p Trametinib 11707110 NSC758246 approved sensitive High Melanoma cell line (M14) (500nM)
hsa-miR-520g-3p Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (M14) (500nM)
hsa-miR-520g-3p Bortezomib 387447 NSC681239 approved sensitive Low Multiple Myeloma cell line (RPMI-8266, H929)
hsa-miR-520g-3p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-520g-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-520g-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-520g-3p Paclitaxel 36314 NSC125973 approved resistant cell line (HS578T)
hsa-miR-520g-3p Doxorubicin 31703 NSC123127 approved sensitive cell line (HS578T)
hsa-miR-520g-3p Ethanol+Tamoxifen sensitive cell line (LY2)
hsa-miR-520g-3p Sunitinib 5329102 NSC750690 approved resistant tissue (CardA)
hsa-miR-520g-3p Paclitaxel 36314 NSC125973 approved sensitive cell line (SKOV3)
hsa-miR-520g-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (T24)
hsa-miR-520g-3p Oxaliplatin 6857599 NSC266046 approved resistant cell line (IGROV-1)
hsa-miR-520g-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-520g-3p Cisplatin 5460033 NSC119875 approved resistant cell line (H460)
hsa-miR-520g-3p Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

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