miRTarBase - #MIRT463760


—
pre-miRNA Information
pre-miRNA hsa-mir-4786   
Genomic Coordinates chr2: 239943015 - 239943094
Description Homo sapiens miR-4786 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4786-3p
Sequence 51| UGAAGCCAGCUCUGGUCUGGGC |72
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs765116255 2 dbSNP
rs982109365 6 dbSNP
rs949249229 7 dbSNP
rs759383793 8 dbSNP
rs990649205 9 dbSNP
rs1389629709 14 dbSNP
rs975346189 18 dbSNP
rs188625223 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol YPEL2   
Synonyms FKSG4
Description yippee like 2
Transcript NM_001005404   
Expression
Putative miRNA Targets on YPEL2
3'UTR of YPEL2
(miRNA target sites are highlighted)		 
>YPEL2|NM_001005404|3'UTR
   1 TTGGACAGCATCTACCCAACCCAGTGTCCACGTGAACGCCATTCAACCGAACATTCTTCCCAAGCGTGAGAGAGTGACTG
  81 ACACTTGGTTCCATCCATTTAGGGGCCTTGCCATCCGGGGCATCCTCCCACCCTGACGCCATCTTTCTGGTGACCGGCCT
 161 CTAAATCGCTGTCTCTCTGTCTCTTTGCTTTGTATCTGTTTGTGAGTTGATCCTGGCTTCTCTCTCTGTTCTAGTTTTGG
 241 CTGAAAACAAAACAACAAAAGGAACAGATCCTTGACCGCATGGCGGCAGCCCACCTTGGTAAGGGCCCCAGGGCCCATGC
 321 GAGAGCTGCCTGATGGCCTCTTGTCAGGAGAGCAGTGGCACGGGGGCGTGAGGAAGAGGGAAAGGGGAAACTCTAAGGGT
 401 CCTGGCGCGGGGAAGGGGTGGAAGGGTGGAGGTAGGAACAAAATTGCGCCGCTCCTGGAGACCTGATAACTTAGGCTTGA
 481 AATAATTGACTTGTCTAAAAGGACAAAGAGAAAAAAAAAATACCTCATGACTGCATTCTCTCTGACTAGAAGCTTCTGTT
 561 CCTGACACCAAATGTGCCAGGTTAGCAAATGAGCACAAGATGTGGCCCTGATTCTAGTTGGTGGGGCAAGGGCCTGGTTC
 641 TCCTGGGCTGAGTGGGGGAGTGTCCTGGCAGCAGCGAGTGACCTGGGCAGTGGCCAGGTGGGTGCGATGACTCTGATGCC
 721 TCACTCAGTCTCTGGGCAATCATCATCTTTGCCTCTAGCCACCGTAGATAAGGTGTGAAGGGACTGCTGTTTGCAATGGG
 801 CTTACCATCCAAATATCCCAAAGGCTTTGACCAGCAACCAAGTAAAATCAGTAATTGAGGAGAGCAGGGCACAAAGGGGC
 881 TGCAGTTTGGGAGCTCCTGAAGAAATGGCTCAGATATTGAGTCAGAGAAATAAAAAGTAGGATCAGTTAGCAATTCTAAC
 961 TGCCCTTCCTTCTGACCCCTCATAAGAGGAGTGTGGTGAGGGAGGGGACTGGGTAGGGGTCATCCCAGGAGGAGGGGTTT
1041 ACATTGGAACCAGTTCAGGTTCGGTGCATCTTTCCTCTTCGGTTTTACAGTGGCTTCCGTGGGATCGTCAATTTCTTGTT
1121 CTTAGAGTTTCGGGTGTTTTTCTCCAGTCTTGTTACTGTAGACTGTAGAAAGCACGGGCCCCAGGCTCTGAGCTTAGTAA
1201 TAACCTGGCTGGTAGATTCCTCATGCCCCTAATTGTCCCACTTAGGCCTGAATGTCTTGCATGGAGAGAAATCTCCTGTC
1281 AGTGTGGTCCAGCAGCAGGGAGGAGTTCTGCCCAAATTCCGATATCACCCCTTCCCCCATCCAAGCATCCTTCGATTAGG
1361 GAAGTGGAGAGCACATCCCTGTAAGGCCCATAAGAGAAAGAGGAGTTTGTTACATTTAATCAACACTGTGAAGTCTGTTC
1441 TACAGCAATTCAGCCATTACACAGTATATGACTGAAACTCATTTAACTGGGTTAATTTCATTTCTTAGACTGAATATATT
1521 ATTGTTAAGATACGTGTGCGTGTTAGGTAATTCTCAGCATCTCCTCCAAGTAGGCCGACCTTCTCGGAAAATTCACCCTA
1601 AAAGTCTCACAAAAGAATGAGTTCATGGGGAGATTCTGTAAAGTGATGAACTGAGATGAAAGCAGCCAACAGCCCAGGAG
1681 CTTTTCAGAATAGCGTCTGCAGCAGAACCAGTTTCCATTCAGAGCGCGTCCTTGGTGGAAATGCTTTTTTGTGTGTCTCC
1761 ACGCGCTGATGGTGGAATGGGAGCCCCAAGACGTGTGGGCTTAGAAATCAACTTTTGTTCCCCAAGGCTTCTTGTCCAGA
1841 TCTTTCCAGTGCTTTCATAGCCCTGGGAGATCAAGTTGTTCTCCCCACTTTACTGCAAGGTAGACTGAAGTTCAGAAGAA
1921 ATACTGAATTTCTGCTCCCAGAAGAATAGTTTCTCTGGCTCACAGGCCCAAGTTCTCAATGAAATCGTTTTTTAACTTTC
2001 ACATTCCTAAGCTGGCTTCCCGGCACAGAAGCCATGGATTTCCCCTCTCTCCCTTCCCCCTCCTCAAGGAAATAGTCTTC
2081 CTTTATGGATTTTCATTGGACTCTTTCCTCAGCGATTGTCCTGGCTGTTTATTGATAGTCCTTCCCATAAGAAAATGGGG
2161 TTAAACATGGGGTAGGTATTTTGTCTTTCAAACTACAAATGGAATGTGGTGACATAAACTAGACATGGGGTGCCCTCAAG
2241 TTTCCAAGGGGACCAATGTGCCACTGTTCTTCCTTGGGGATGAGGCCTTTGACTGTTGGATGGATCAGAGCAGGCTCCAG
2321 TCAGACCCTGGTTCTGAATGTTTTTTTTTTCGGTGACTATCCAGTGAGCCTTCAGTGGGTGCAAGGCGCCATACTTGCTG
2401 TGAGAGAGCTGAGTAGAGTGTTGGTTTTTCCATAACTACAGGGGGAAAAAAAGTCATTAGGCTTTCCCTTTGTGTCAGTG
2481 AAACCAAAAGTGCTTCTTACAACGTTCGCTCTGTTCATGGGTTGTCTATCTAACATTGAGCAGCATTGGAGAGGCCACAG
2561 CTGAGCTATGGAGATGCTAAATTAACTCATGGCCTCAGTCAGTTCATTCTTTAATTTCCTCACCAAATTATTGACTTAGA
2641 GCATAACCAAAGACCTCATTCATTCACCCCAGGTGGGTTGGGGTAATTGGAGTTTGTTGGTGAAGTTTGGGGGCGGGGTG
2721 TTGGGAGTAGAGACAGGGTAAGGGGACGTGAGAAAGGAAAAGGCATGAAGTTCTATACCTCAGCCAGCAGCTGCCTTCGT
2801 TTGGAACTGAAGTCCAGCCAGCAGACTCTCTAGCTCCATCTCCCCTGTGCCACCCTAGGTCATATGACCTTGGCCACCTT
2881 GGAGTAGACCCAGACCCCTCGGGACCCGGGACATTAGTCTCAGGCTGCTGATGGATTGATTTGACATGAACCAAACACAG
2961 CCAAACTCGATACCCACAAGCTGTCAGCTGAACCTGACTGAGTGTTCTTCCTGAGTTCACGAGGATAGGCTAGAGTGCAT
3041 TTTTACTGGTGGATCAGTGTGTGCGAAAGAGATGACCCTTTATAAAGAGATTTTCAAGTGGATATATATAAAAGAAACAG
3121 TTGCTTGTAAAATATACTTTTGTAAATAATATTTAATTTTTTAAATAATATATTTGGTGCTGTTTTCTCAGATCCCCTGA
3201 GAGCACTTTTTATTTTCCTTTTAAATTCTATGGTTTCCTTTGCATTTCTTGAAGTATATTTTAAGGGAAACAGTGATCAC
3281 CAATACATGTTTTCAGTTTTTTTTTTTTTTAAGGTCTCTATCACTTTAATCTGGATCAAGGCTTTGAAGCAATGCCTCTC
3361 TGCATTTTTTCCCCAGTGGAACAGACTCTGCAGTACATTAATCAGGTTGAGAATTGAAATATTTTCTTGCATCAGTATTG
3441 GCTAGAAAAGAAAATAAATAAAACCAAGTTAATTTAGTAGTAACAACTTACAGTGATTCTTCCTGTTGGAAGAATTTCCA
3521 ACAAATCAGAATCACGTTTTTAGTTGTGCGTGTGCGCGCACACGTGTGTAAAAAGCACTTTCGATTGTGCCTCCTGTTTT
3601 CTCGAGTGGGGACACTTTAACTACAGTTTACACCTCGGGCGCATAAAGTTTTTCTTCTCTTTCTCTCTGGTTGTTTCTGT
3681 TTCTGAGTGGACCAACAGCAGAACCCACGAGGATTTGTTTTGAGTATGGAGCTGTTGCGGGTTTGCTCCTTTTTCTTGCT
3761 TTGCGTGCTCAGTTTTTACAGACTGTAAAGGAGATGTGTTGTTTGTGAAGATGGAGCAGAGTCAAATCTGTGCTTCTAAC
3841 TGAGATGAGAGTGTATTAATCACGTATCGCAGGGCTCCAGCTGTTTTAGAAGCCACATCATGTTAAACATTAACTGGTTT
3921 GGATTAAAAGAACATTAATATTATAATACACATATCTTAGTGGTAAACAGCTTTTTTTTTTTAAGGTCAGATTGCCTCAG
4001 GTTTAGAAAGAGGCTGAGAAATCAAATCTTGAACACAATCAACTTACATATTTTAAAGGAATCTGCCTCAAATGAGAAAA
4081 TATGCTAGTTATCTAGATAGAGGAAAGAGATATTTACTTTTTTAAAAATTAAAATAGTTATGAAATCTGGCAGAAAAGGT
4161 AAAGCCTAGAAGAAACTATGAAAGCTATTCTCATGTTACCAAATTCTATCTGCGCATATGTTTTTGTATAACATTTCGGT
4241 GACAGTGGGAGTCGGTTCCCTTTCCCAACCTGCAGAGACTATCTTCCAATACAGAATCTGTCTATTTATGCTTGTGTTTA
4321 CAAACTGTATTTGTTGGGTTTGGGTTTTTGTTTTCTTTGGTGGCATTTTTCAGGTCACTTTGCTTCTATAACAAAGGTAA
4401 TTGTTTTCAAATAATTTGTCTTCACCTTTTCCTGTATTTGTACATAGTGATTCAGTATTAGAGAAAAGTGCATTGTTTCT
4481 GTCATATTTCCAATCTGTGTTGGTGCTCATTTGAGAAAATAAAAGTTTTCAAATATTAACTCTTAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cggGUCUGGUCUCGACCGAAGu 5'
             ||  ||  |||||||||| 
Target 5' tcaCATTCCTAAGCTGGCTTCc 3'
 1999 - 2020 163.00 -20.40
2 
miRNA  3' cggguCUGGUCU-CGACCGAAGu 5'
               || : ||  |||||||| 
Target 5' tttgtGAGTTGATCCTGGCTTCt 3'
 199 - 221 149.00 -13.10
3 
miRNA  3' cgGGUC-UGGUCUCGACCGAAGu 5'
            :|:|  ::| || ||||||| 
Target 5' ctTCGGTTTTACAG-TGGCTTCc 3'
 1077 - 1098 147.00 -13.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30183008 15 COSMIC
COSN30476737 22 COSMIC
COSN26585571 27 COSMIC
COSN30145159 31 COSMIC
COSN31959711 32 COSMIC
COSN30189984 47 COSMIC
COSN20058207 66 COSMIC
COSN31493139 111 COSMIC
COSN31561533 138 COSMIC
COSN30729048 169 COSMIC
COSN31484680 244 COSMIC
COSN31638898 278 COSMIC
COSN22994986 286 COSMIC
COSN31480457 300 COSMIC
COSN25273244 311 COSMIC
COSN28766335 322 COSMIC
COSN17037894 362 COSMIC
COSN20093328 516 COSMIC
COSN27365838 521 COSMIC
COSN14582668 1176 COSMIC
COSN22000734 1269 COSMIC
COSN21093109 1452 COSMIC
COSN31490180 1978 COSMIC
COSN28753503 1987 COSMIC
COSN31609073 1987 COSMIC
COSN26576467 2012 COSMIC
COSN17075962 2024 COSMIC
COSN20788411 2167 COSMIC
COSN9671695 2353 COSMIC
COSN19149607 2358 COSMIC
COSN30164440 2481 COSMIC
COSN31529139 2508 COSMIC
COSN20633210 2584 COSMIC
COSN30164500 2640 COSMIC
COSN31609051 2653 COSMIC
COSN31516957 2709 COSMIC
COSN31567805 2851 COSMIC
COSN27993229 2858 COSMIC
COSN31482776 2883 COSMIC
COSN20114245 3311 COSMIC
COSN8603503 3415 COSMIC
COSN31607478 3428 COSMIC
COSN17904459 3442 COSMIC
COSN31567796 3474 COSMIC
COSN14980698 3486 COSMIC
COSN28819202 3519 COSMIC
COSN30175856 3550 COSMIC
COSN31583204 3583 COSMIC
COSN1724446 3637 COSMIC
COSN28693947 3703 COSMIC
COSN31603061 3730 COSMIC
COSN9671696 3902 COSMIC
COSN27484040 3983 COSMIC
COSN21335487 4070 COSMIC
COSN28474549 4198 COSMIC
COSN23608392 4230 COSMIC
COSN31570991 4238 COSMIC
COSN31534937 4354 COSMIC
COSN31539534 4370 COSMIC
COSN28758350 4382 COSMIC
COSN26574239 4397 COSMIC
COSN31527675 4533 COSMIC
COSN7441228 4540 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs749326816 2 dbSNP
rs1249918995 4 dbSNP
rs1185610879 5 dbSNP
rs771573304 7 dbSNP
rs1182562564 9 dbSNP
rs779560751 17 dbSNP
rs746278461 18 dbSNP
rs772457644 20 dbSNP
rs776184425 24 dbSNP
rs1464684895 25 dbSNP
rs1430187690 28 dbSNP
rs113433818 30 dbSNP
rs761553659 32 dbSNP
rs963955483 33 dbSNP
rs545972370 34 dbSNP
rs1229688031 37 dbSNP
rs377529666 38 dbSNP
rs370346178 39 dbSNP
rs1385296157 40 dbSNP
rs751500549 41 dbSNP
rs759291743 49 dbSNP
rs767378887 50 dbSNP
rs756419896 52 dbSNP
rs1450261230 57 dbSNP
rs531849575 66 dbSNP
rs961079443 67 dbSNP
rs1463041250 68 dbSNP
rs987190090 74 dbSNP
rs1169161466 78 dbSNP
rs1444804441 83 dbSNP
rs1386713975 88 dbSNP
rs1182130324 92 dbSNP
rs1461193483 98 dbSNP
rs150746978 104 dbSNP
rs1198124498 107 dbSNP
rs945892499 109 dbSNP
rs919704804 115 dbSNP
rs58549129 117 dbSNP
rs985321416 118 dbSNP
rs1361851296 132 dbSNP
rs1185753907 134 dbSNP
rs1313260128 136 dbSNP
rs367641230 138 dbSNP
rs904481265 139 dbSNP
rs1307480076 141 dbSNP
rs1161628218 146 dbSNP
rs866381240 152 dbSNP
rs1394264911 155 dbSNP
rs547702527 156 dbSNP
rs1042311007 157 dbSNP
rs1161336663 158 dbSNP
rs902397534 160 dbSNP
rs936700189 162 dbSNP
rs1184457384 163 dbSNP
rs773118495 169 dbSNP
rs1343114969 172 dbSNP
rs1417796003 172 dbSNP
rs201430667 174 dbSNP
rs1223299295 178 dbSNP
rs1289040616 183 dbSNP
rs771935792 185 dbSNP
rs1221970154 195 dbSNP
rs1289820013 195 dbSNP
rs749035555 202 dbSNP
rs1366420593 212 dbSNP
rs1351697626 215 dbSNP
rs1279859026 217 dbSNP
rs1240922248 219 dbSNP
rs1053802034 232 dbSNP
rs1012276956 233 dbSNP
rs1306283307 240 dbSNP
rs1404994796 249 dbSNP
rs1046586296 250 dbSNP
rs1300769027 251 dbSNP
rs906710258 258 dbSNP
rs1238301656 259 dbSNP
rs12060 268 dbSNP
rs192335102 271 dbSNP
rs895111746 272 dbSNP
rs1313572001 275 dbSNP
rs184447916 278 dbSNP
rs115275777 279 dbSNP
rs1266816353 284 dbSNP
rs995205909 285 dbSNP
rs1027052923 286 dbSNP
rs1005040900 292 dbSNP
rs536763699 294 dbSNP
rs1286682145 298 dbSNP
rs1206669321 301 dbSNP
rs953811266 301 dbSNP
rs1348324092 304 dbSNP
rs1267399837 310 dbSNP
rs554915819 311 dbSNP
rs1325622071 313 dbSNP
rs1280728264 314 dbSNP
rs1403809063 318 dbSNP
rs912276627 321 dbSNP
rs1319930294 322 dbSNP
rs1380868015 327 dbSNP
rs143438600 333 dbSNP
rs1177644037 338 dbSNP
rs1471205088 339 dbSNP
rs1427832472 341 dbSNP
rs1175783332 342 dbSNP
rs189977492 344 dbSNP
rs1244029083 348 dbSNP
rs1191362234 349 dbSNP
rs1446657689 355 dbSNP
rs1041693671 360 dbSNP
rs1204060740 362 dbSNP
rs374779121 363 dbSNP
rs1261238786 368 dbSNP
rs554490963 369 dbSNP
rs987121626 372 dbSNP
rs10599 373 dbSNP
rs936568119 376 dbSNP
rs546334532 389 dbSNP
rs1224743725 391 dbSNP
rs967117744 391 dbSNP
rs1337738306 394 dbSNP
rs1454970026 402 dbSNP
rs977257225 406 dbSNP
rs1053824781 407 dbSNP
rs1384592402 408 dbSNP
rs1421676447 409 dbSNP
rs916576467 410 dbSNP
rs948015438 411 dbSNP
rs1183952856 415 dbSNP
rs1241178808 415 dbSNP
rs558394725 415 dbSNP
rs1209279557 422 dbSNP
rs2520 425 dbSNP
rs1189123002 427 dbSNP
rs1399577147 427 dbSNP
rs576573886 429 dbSNP
rs1193587970 430 dbSNP
rs774101832 433 dbSNP
rs371974382 447 dbSNP
rs1180268193 448 dbSNP
rs1248584101 449 dbSNP
rs543959143 451 dbSNP
rs766971075 452 dbSNP
rs765324823 453 dbSNP
rs34284504 455 dbSNP
rs1326866186 460 dbSNP
rs562045170 467 dbSNP
rs1366418267 470 dbSNP
rs1449367462 472 dbSNP
rs1165764066 474 dbSNP
rs1443038657 477 dbSNP
rs1383113815 482 dbSNP
rs976079165 489 dbSNP
rs1026692095 491 dbSNP
rs1470439719 494 dbSNP
rs574017268 496 dbSNP
rs1201820030 502 dbSNP
rs1348670656 505 dbSNP
rs1482465315 505 dbSNP
rs1423984571 507 dbSNP
rs953696111 507 dbSNP
rs1223225906 509 dbSNP
rs1224190209 510 dbSNP
rs1356863139 510 dbSNP
rs1036539301 511 dbSNP
rs1289524121 511 dbSNP
rs1376146042 511 dbSNP
rs1278359623 512 dbSNP
rs540962291 522 dbSNP
rs1409267805 524 dbSNP
rs1006527431 533 dbSNP
rs1269018611 537 dbSNP
rs774945880 541 dbSNP
rs559551302 547 dbSNP
rs1422906364 549 dbSNP
rs1201604429 553 dbSNP
rs1242267477 556 dbSNP
rs140280722 558 dbSNP
rs977976756 562 dbSNP
rs1410032310 564 dbSNP
rs953603706 568 dbSNP
rs760367418 572 dbSNP
rs1268926304 573 dbSNP
rs1189579789 575 dbSNP
rs1489684994 577 dbSNP
rs1231041386 585 dbSNP
rs1018584029 589 dbSNP
rs923758090 590 dbSNP
rs1319143889 591 dbSNP
rs1282627533 593 dbSNP
rs763961165 593 dbSNP
rs1469194576 597 dbSNP
rs775636331 600 dbSNP
rs1324894705 615 dbSNP
rs967129171 616 dbSNP
rs977549176 618 dbSNP
rs1367167486 621 dbSNP
rs1289711091 622 dbSNP
rs56366222 625 dbSNP
rs958018773 629 dbSNP
rs192617882 634 dbSNP
rs1156722033 635 dbSNP
rs916462374 637 dbSNP
rs957454534 648 dbSNP
rs991322755 649 dbSNP
rs1423986140 653 dbSNP
rs563164242 655 dbSNP
rs1467875802 657 dbSNP
rs1186701407 658 dbSNP
rs1486663234 661 dbSNP
rs1174783189 662 dbSNP
rs1240659548 676 dbSNP
rs915846455 683 dbSNP
rs1401968240 692 dbSNP
rs1265617255 695 dbSNP
rs1221731696 697 dbSNP
rs530501278 703 dbSNP
rs548704228 706 dbSNP
rs1296410609 707 dbSNP
rs566913262 713 dbSNP
rs147487642 714 dbSNP
rs1318228165 720 dbSNP
rs1434164499 723 dbSNP
rs1406723436 732 dbSNP
rs1334440987 735 dbSNP
rs1464082987 739 dbSNP
rs940792317 745 dbSNP
rs1429868907 748 dbSNP
rs551237570 749 dbSNP
rs1188324730 752 dbSNP
rs1409347184 754 dbSNP
rs1445662743 755 dbSNP
rs763235835 760 dbSNP
rs940757706 761 dbSNP
rs534662137 764 dbSNP
rs7214150 765 dbSNP
rs899327441 773 dbSNP
rs1221940013 774 dbSNP
rs1262705843 776 dbSNP
rs1483226714 790 dbSNP
rs1345460055 794 dbSNP
rs149755812 795 dbSNP
rs1305968116 796 dbSNP
rs1297223757 798 dbSNP
rs781762393 804 dbSNP
rs1227350182 809 dbSNP
rs1009122012 817 dbSNP
rs1050674707 818 dbSNP
rs889343787 825 dbSNP
rs569413729 831 dbSNP
rs1019274521 832 dbSNP
rs540147023 836 dbSNP
rs1253319884 838 dbSNP
rs1368285311 848 dbSNP
rs1177671931 851 dbSNP
rs999677632 865 dbSNP
rs1030708458 866 dbSNP
rs1424928731 867 dbSNP
rs1479141086 880 dbSNP
rs1387424608 882 dbSNP
rs1185873433 887 dbSNP
rs1198273941 889 dbSNP
rs1251940582 893 dbSNP
rs145621636 895 dbSNP
rs765787166 897 dbSNP
rs1431895216 906 dbSNP
rs114519383 917 dbSNP
rs1023526166 920 dbSNP
rs1223437247 921 dbSNP
rs576741882 936 dbSNP
rs1293604408 945 dbSNP
rs1242416918 949 dbSNP
rs982105614 954 dbSNP
rs1339804413 955 dbSNP
rs1429638269 955 dbSNP
rs927960030 957 dbSNP
rs1392606175 960 dbSNP
rs1348037359 962 dbSNP
rs940826086 963 dbSNP
rs537530105 967 dbSNP
rs555942733 968 dbSNP
rs1306907068 969 dbSNP
rs1424828425 970 dbSNP
rs1308764042 976 dbSNP
rs868787778 978 dbSNP
rs551042968 982 dbSNP
rs1161811931 984 dbSNP
rs148456093 985 dbSNP
rs981294810 987 dbSNP
rs72839014 990 dbSNP
rs889397421 991 dbSNP
rs1052504106 994 dbSNP
rs972082773 995 dbSNP
rs1200252224 997 dbSNP
rs944928870 999 dbSNP
rs142598612 1016 dbSNP
rs146583958 1020 dbSNP
rs1207813377 1023 dbSNP
rs999164303 1031 dbSNP
rs780332274 1036 dbSNP
rs1261119327 1037 dbSNP
rs1268168955 1043 dbSNP
rs1031179703 1052 dbSNP
rs1326999591 1053 dbSNP
rs1287095154 1054 dbSNP
rs1405089392 1058 dbSNP
rs893530192 1058 dbSNP
rs930706223 1059 dbSNP
rs1205809197 1060 dbSNP
rs544929043 1063 dbSNP
rs889260559 1064 dbSNP
rs563127562 1068 dbSNP
rs117271053 1069 dbSNP
rs903420537 1075 dbSNP
rs969309561 1081 dbSNP
rs981991064 1082 dbSNP
rs868669029 1090 dbSNP
rs1452970860 1099 dbSNP
rs1034861040 1100 dbSNP
rs1262086977 1105 dbSNP
rs117303140 1107 dbSNP
rs1032674842 1108 dbSNP
rs1346564809 1112 dbSNP
rs1449204907 1118 dbSNP
rs1326674883 1124 dbSNP
rs892878401 1124 dbSNP
rs1169789774 1127 dbSNP
rs1320682980 1128 dbSNP
rs1392509713 1132 dbSNP
rs1012633303 1133 dbSNP
rs972061393 1139 dbSNP
rs920695713 1150 dbSNP
rs560605594 1152 dbSNP
rs141313096 1154 dbSNP
rs1391777911 1155 dbSNP
rs116096220 1156 dbSNP
rs986329296 1159 dbSNP
rs1364227879 1164 dbSNP
rs184494448 1166 dbSNP
rs961315839 1170 dbSNP
rs189014778 1176 dbSNP
rs145046672 1177 dbSNP
rs180808589 1187 dbSNP
rs935007981 1192 dbSNP
rs1243516385 1193 dbSNP
rs1247315201 1205 dbSNP
rs1052088700 1212 dbSNP
rs146800272 1220 dbSNP
rs1444093234 1225 dbSNP
rs1275809083 1226 dbSNP
rs986192405 1228 dbSNP
rs868026509 1231 dbSNP
rs1339656707 1236 dbSNP
rs1489285439 1239 dbSNP
rs910623190 1241 dbSNP
rs1364859826 1246 dbSNP
rs1010602394 1247 dbSNP
rs1044913848 1250 dbSNP
rs905037825 1255 dbSNP
rs770586873 1261 dbSNP
rs140445159 1262 dbSNP
rs1333575466 1263 dbSNP
rs1189598042 1265 dbSNP
rs774372728 1267 dbSNP
rs1040554034 1273 dbSNP
rs1166997630 1274 dbSNP
rs1429367520 1282 dbSNP
rs570258131 1283 dbSNP
rs993931471 1284 dbSNP
rs1027645575 1293 dbSNP
rs1369152951 1300 dbSNP
rs952142777 1303 dbSNP
rs1183972504 1309 dbSNP
rs924895284 1316 dbSNP
rs1186191707 1319 dbSNP
rs1235734374 1319 dbSNP
rs537593046 1321 dbSNP
rs375075823 1322 dbSNP
rs1054536403 1323 dbSNP
rs745841020 1331 dbSNP
rs892772570 1338 dbSNP
rs73996440 1340 dbSNP
rs1442990298 1344 dbSNP
rs1044148640 1345 dbSNP
rs9905500 1346 dbSNP
rs924878662 1347 dbSNP
rs934915785 1348 dbSNP
rs1366439204 1350 dbSNP
rs1002701066 1354 dbSNP
rs1052564158 1355 dbSNP
rs1380543855 1360 dbSNP
rs1411511319 1365 dbSNP
rs1162538837 1378 dbSNP
rs1395359378 1382 dbSNP
rs1470490384 1391 dbSNP
rs1253264092 1403 dbSNP
rs1015342762 1406 dbSNP
rs1313279147 1414 dbSNP
rs763804947 1419 dbSNP
rs773909470 1436 dbSNP
rs946345785 1440 dbSNP
rs1044801923 1449 dbSNP
rs534828539 1451 dbSNP
rs904923288 1452 dbSNP
rs952105364 1456 dbSNP
rs1482455066 1462 dbSNP
rs1003349576 1468 dbSNP
rs986120216 1471 dbSNP
rs1434614120 1478 dbSNP
rs553308873 1481 dbSNP
rs1181823559 1489 dbSNP
rs1056282520 1491 dbSNP
rs1257391755 1505 dbSNP
rs897767961 1510 dbSNP
rs1322658856 1529 dbSNP
rs150484544 1534 dbSNP
rs910671930 1535 dbSNP
rs186454537 1541 dbSNP
rs976249446 1559 dbSNP
rs1457937721 1560 dbSNP
rs952031553 1561 dbSNP
rs1192521404 1565 dbSNP
rs1403662347 1570 dbSNP
rs924768543 1577 dbSNP
rs1007535251 1578 dbSNP
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rs1322248632 1840 dbSNP
rs956239653 1842 dbSNP
rs1314515693 1844 dbSNP
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rs535445023 1850 dbSNP
rs914862697 1864 dbSNP
rs948934103 1866 dbSNP
rs1411213525 1870 dbSNP
rs1021851483 1876 dbSNP
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rs1368380346 1888 dbSNP
rs1226869659 1898 dbSNP
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rs1458774223 1902 dbSNP
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rs1163230537 1906 dbSNP
rs1423775587 1907 dbSNP
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rs770177271 1957 dbSNP
rs1267028905 1960 dbSNP
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rs896886118 1964 dbSNP
rs929172649 1965 dbSNP
rs1229772253 1967 dbSNP
rs931199251 1969 dbSNP
rs1049347738 1970 dbSNP
rs1387013790 1971 dbSNP
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rs1006776150 1988 dbSNP
rs1457793880 1988 dbSNP
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rs1413414925 2007 dbSNP
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rs1017629271 2013 dbSNP
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rs146704375 2022 dbSNP
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rs1376481019 4500 dbSNP
rs568275127 4509 dbSNP
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rs1431963681 4520 dbSNP
rs1424536459 4525 dbSNP
rs770681875 4534 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions C8166 , TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462572. RNA binding protein: AGO2. Condition:C8166 NL4-3 PAR-CLIP data was present in GSM1462573. RNA binding protein: AGO2. Condition:TZM-bl BaL PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462572
Method / RBP PAR-CLIP / AGO2
Cell line / Condition C8166 / C8166 NL4-3
Location of target site ENST00000312655.4 | 3UTR | UUUACAGUGGCUUCCG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1462573
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl BaL
Location of target site ENST00000312655.4 | 3UTR | UUUACAGUGGCUUCCGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000312655.4 | 3UTR | UUUACAGUGGCUUCCG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
91 hsa-miR-4786-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055412 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 6
MIRT219055 TAF8 TATA-box binding protein associated factor 8 2 4
MIRT247423 ATP2A2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 2 2
MIRT301990 NUP50 nucleoporin 50 2 4
MIRT344711 ZNF207 zinc finger protein 207 2 2
MIRT409792 FOXO3 forkhead box O3 2 2
MIRT441666 SEPT3 septin 3 2 2
MIRT441708 RP1L1 RP1 like 1 2 2
MIRT441843 SYT11 synaptotagmin 11 2 2
MIRT441862 TEX35 testis expressed 35 2 2
MIRT441872 PPP1R15B protein phosphatase 1 regulatory subunit 15B 2 2
MIRT442363 ZC3H12C zinc finger CCCH-type containing 12C 2 2
MIRT442588 HOXD9 homeobox D9 2 2
MIRT442891 RHCG Rh family C glycoprotein 2 2
MIRT443100 RNF20 ring finger protein 20 2 2
MIRT443238 ANKRD26 ankyrin repeat domain 26 2 2
MIRT443611 OR2D2 olfactory receptor family 2 subfamily D member 2 2 2
MIRT443637 ELP6 elongator acetyltransferase complex subunit 6 2 2
MIRT449298 SMIM19 small integral membrane protein 19 2 2
MIRT449581 ZNF510 zinc finger protein 510 2 2
MIRT450699 RORA RAR related orphan receptor A 2 2
MIRT455269 DDX39B DExD-box helicase 39B 2 10
MIRT456608 SFMBT2 Scm like with four mbt domains 2 2 2
MIRT461509 NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 2 2
MIRT461710 ZNF426 zinc finger protein 426 2 2
MIRT463760 YPEL2 yippee like 2 2 2
MIRT465221 TRIP10 thyroid hormone receptor interactor 10 2 2
MIRT466648 TAGLN2 transgelin 2 2 2
MIRT473046 MPRIP myosin phosphatase Rho interacting protein 2 2
MIRT473184 MKNK2 MAP kinase interacting serine/threonine kinase 2 2 4
MIRT478996 COLGALT1 collagen beta(1-O)galactosyltransferase 1 2 2
MIRT479650 CD4 CD4 molecule 2 2
MIRT480329 C5orf51 chromosome 5 open reading frame 51 2 2
MIRT484162 FAM71B family with sequence similarity 71 member B 2 2
MIRT487586 FAM83H family with sequence similarity 83 member H 2 2
MIRT487598 NKD2 naked cuticle homolog 2 2 4
MIRT494852 ANKRD24 ankyrin repeat domain 24 2 2
MIRT494931 TMEM167A transmembrane protein 167A 2 2
MIRT495227 SIK2 salt inducible kinase 2 2 4
MIRT496088 C17orf85 nuclear cap binding subunit 3 2 2
MIRT496172 RPL35A ribosomal protein L35a 2 4
MIRT496729 GPR180 G protein-coupled receptor 180 2 2
MIRT496786 COL9A2 collagen type IX alpha 2 chain 2 2
MIRT496844 KCNIP2 potassium voltage-gated channel interacting protein 2 2 2
MIRT497924 BTG1 BTG anti-proliferation factor 1 2 2
MIRT512249 ARPP19 cAMP regulated phosphoprotein 19 2 4
MIRT513269 SCUBE1 signal peptide, CUB domain and EGF like domain containing 1 2 4
MIRT525310 FANCA Fanconi anemia complementation group A 2 4
MIRT525805 SOD2 superoxide dismutase 2 2 2
MIRT526178 HEPH hephaestin 2 2
MIRT530555 NKIRAS2 NFKB inhibitor interacting Ras like 2 2 4
MIRT531431 MPZL3 myelin protein zero like 3 2 2
MIRT531715 TARS threonyl-tRNA synthetase 2 2
MIRT531812 POLD3 DNA polymerase delta 3, accessory subunit 2 2
MIRT536185 MAOB monoamine oxidase B 2 2
MIRT541015 WIPI2 WD repeat domain, phosphoinositide interacting 2 2 2
MIRT544685 ZNF224 zinc finger protein 224 2 4
MIRT560194 CACNG7 calcium voltage-gated channel auxiliary subunit gamma 7 2 2
MIRT560214 SLC7A1 solute carrier family 7 member 1 2 2
MIRT560703 PRPF4B pre-mRNA processing factor 4B 2 2
MIRT561023 LIN7C lin-7 homolog C, crumbs cell polarity complex component 2 2
MIRT562249 GRWD1 glutamate rich WD repeat containing 1 2 2
MIRT566256 PTBP1 polypyrimidine tract binding protein 1 2 2
MIRT610519 HIAT1 major facilitator superfamily domain containing 14A 2 2
MIRT611255 EHD3 EH domain containing 3 2 2
MIRT625352 MGLL monoglyceride lipase 2 2
MIRT633625 R3HDM2 R3H domain containing 2 2 2
MIRT633638 CASC5 kinetochore scaffold 1 2 2
MIRT643514 CCDC115 coiled-coil domain containing 115 2 2
MIRT647629 PELI3 pellino E3 ubiquitin protein ligase family member 3 2 2
MIRT651218 ZNF225 zinc finger protein 225 2 2
MIRT656738 LMBR1L limb development membrane protein 1 like 2 2
MIRT658055 FSD1L fibronectin type III and SPRY domain containing 1 like 2 2
MIRT662937 PSMB2 proteasome subunit beta 2 2 2
MIRT666735 RALY RALY heterogeneous nuclear ribonucleoprotein 2 2
MIRT667491 MACROD2 MACRO domain containing 2 2 2
MIRT668131 GJD2 gap junction protein delta 2 2 2
MIRT671644 FBXO36 F-box protein 36 2 2
MIRT674924 TRPM6 transient receptor potential cation channel subfamily M member 6 2 2
MIRT704425 CTNNBIP1 catenin beta interacting protein 1 2 2
MIRT709712 DNAJC11 DnaJ heat shock protein family (Hsp40) member C11 2 2
MIRT710068 UBL4A ubiquitin like 4A 2 2
MIRT716227 DGKI diacylglycerol kinase iota 2 2
MIRT716265 TOM1 target of myb1 membrane trafficking protein 2 2
MIRT719906 SERP1 stress associated endoplasmic reticulum protein 1 2 2
MIRT720888 CSGALNACT1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 2 2
MIRT721388 ATP13A4 ATPase 13A4 2 2
MIRT721938 LGR4 leucine rich repeat containing G protein-coupled receptor 4 2 2
MIRT722947 SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 2 2
MIRT724745 ZNF391 zinc finger protein 391 2 2
MIRT724761 PSG4 pregnancy specific beta-1-glycoprotein 4 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4786 Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)
hsa-miR-4786-3p Cisplatin 5460033 NSC119875 approved sensitive High Ovarian Cancer cell line (A2780CIS)
hsa-miR-4786-3p Cisplatin 5460033 NSC119875 approved sensitive High Ovarian Cancer cell line (A2780CP20)
hsa-miR-4786-3p Cisplatin 5460033 NSC119875 approved resistant Low Oral Cancer cell line (CAL-27, HSC3, SCC-25, HOK, SCC-9)
hsa-miR-4786-3p Fluorouracil 3385 NSC19893 approved resistant Low Oral Cancer cell line (CAL-27, HSC3, SCC-25, HOK, SCC-9)
hsa-miR-4786-3p Docetaxel 148124 NSC628503 approved resistant High Breast Cancer cell line (MDA-MB-231, MCF-7)
hsa-miR-4786-3p Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-4786-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-4786-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-4786-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-4786-3p Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-miR-4786-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (CP20)
hsa-miR-4786-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (CIS)

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