pre-miRNA Information
pre-miRNA hsa-mir-1273h   
Genomic Coordinates chr16: 24203116 - 24203231
Description Homo sapiens miR-1273h stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-1273h-5p
Sequence 33| CUGGGAGGUCAAGGCUGCAGU |53
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1028034199 14 dbSNP
rs542383563 18 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol UST   
Synonyms 2OST
Description uronyl 2-sulfotransferase
Transcript NM_005715   
Expression
Putative miRNA Targets on UST
3'UTR of UST
(miRNA target sites are highlighted)
>UST|NM_005715|3'UTR
   1 TGTGACTGTGTTGCCTCTATGGCTTTATCTCCCTTTTCCAGAAAGTTCTTTGTTTGGGGAAGTAAAATCCTTAAGGGACT
  81 AAATTAATGCTTGGGTGCATTAAAAAGAACAAAACATTCCCACATGTTGGGGTCATTGGGAGATGCCCGGTTTTGCGGGT
 161 TTTATTTGTTTAATTTTATTCTGTGTTTTCTCTTGGCTCTTTGGGTCTTTCCCGGGTACACTAGATGGCTCCATCCCAAG
 241 GCATCTTGTCATAAAACAGCTTTCCCCCACCCCATATCATGGGAAAAGGGGGAGAAATATAGCCCCTAGCCTAATAACTT
 321 ATCATTTGTAAAATGACTTATAAAAATATTACCTCAATGGTAGGAGACATCCAGACTTGTATATTTCAGTGGAAATACAA
 401 AACCACTTCAGAGACCAGGGTATCTCCTCTGGAAGGATCTAAGAGAAGGTAAGACAGATTAGGACATCGAAAAGGAGGAT
 481 GGAGCCAGGTGCCATGGCTTGAGCCTATAATCCGAGGCTGAGGTGGGAGGATCACTTGAGCCCAGGAGTTTGAGGTTGCA
 561 GTGAGCTGTGATCACACCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCTGTCTCAATTAATTTTTTTTTTTTAAAG
 641 GAGGAGGATCTCCATGGGTAAGTGGTTTCTACCCGCATGGGTAGAGTTCTGCCTCTGGTCCTTCTCAGGGGGCACTTTCA
 721 CCAAGAGCAGTGTAATTATCTCTGAAAGAGCAAGTCAGCTTGTGCCGCATCCCCAACCAATCCACAGCCTGGAGTACCTT
 801 TCAAGGTCAAAGTGCATGGCCAGCTCCATTGAGACATTCCATTTCAAAGCACCGTGCTGACAGATATCAAAGTACTCTAG
 881 CAGGGAAAATAATTTGTTTGCTGTGTAAGGAAGAATGTAGACAAGACAGATAAATCTGAAGGTCATGTGGCATCAGGGAA
 961 AGGGCATGGCTGTGTCTTTTGCACCCAATATGAAACATCTTCTCCCAACACTGCTTTAATGGAAGTTCTAGGAACCAATT
1041 TAGCTCAGGCATTTGACTCCTACAGCAGAAGTTCTGAGCCTGACCACAGATGGTGTGTAATCTATCAAACACACCCCTGG
1121 CCAAGTTGGGTCCTATAGGACCTGGTACTATGTACTATTGTAACTTCTAGTTCCCTAAGAGGTACCTGTTTTCAGTAAAA
1201 AGGGGTCCTGAGTTCTGTGCAGGTGGAAGAGCTACCCGAGAACTACCTGAGTTCTGTGCAGGTAGAGTCCCATTTCTTAT
1281 GGGACCTGTGTGCTCCTGAGAACTCTTACTTGAGACATCAAAAAGAAGCAGCAAGAGCTTCTGGGACAGAGACTGCTTGG
1361 CCAGCTTTGTAAGTAAGTGGCTGCCTCCAATGTGATGTGAGTACATGTTGGGCAGTCTCACTGTCCTAAGGTATGTCTTC
1441 TTTCCACCTCCCACTGCCCCTCCCCTGCCACCTATCAATGATGCCTTGGTTCAGTCATTAGAAATCTGTTGCTTTGAGTT
1521 CTGAAATATTTTCACCTTAAAAAAAATGCTGAAAATACACATTCTCCTGGGAAGACGATAAACAGCTAGCTAAGAAGCCG
1601 AGGTTCAGTGGTGGCAGCAGGAAGGACACTGCCACAAATTTTGTCTATTTCATATTTGTCCCCTAGAGCCAGCCCTAGCA
1681 AATGTGTGAGTTGGGAGTAGTTAATAGTAAATAAGACTCTGACTTTACACAAGCTACACATTTTATACTTTTCATAAACC
1761 ACAAAGTCTCTCTAGAATTTTTTCTGCCTTCACTAAAATTGGACTGTAGCCAAGATATAAAGCAAGTCATTTGGAACCTG
1841 CCGAGTGAGCACTGAAGCTACTTTATCATGAGATGTGTGTTAAGAAGGCTGCAGCCCACAGGAGTCCAGGGAAGGCGGGG
1921 ACCACAGAGGCACAGAGTCCAGCACTTGGCCGCTCATGGGCCTTCTTTCTGCCTCAGAGGACGGGGGCAGAGAAGTGATG
2001 AAGGGAAATGTTCTTAGAGGAGGAAATATCCTTTGTCCTGTTCAGAGAGACCAGGGCCCTACCATTAGGCATACTTTCAG
2081 AAGCAACCTGGAGAACAGCTATCAATCATATTCAAAACCAGTACAAGAACTGCTGCCTGGTACCCTGTGAGTCATTTCTA
2161 TGAAATTCCATATAAAGAATGATGATAAGTTTACACACTGTGCAATCTCACAATCTGAAAATAAAGTTGAGTTGGCTGTG
2241 TTTTCTCTGCTCTTGTCAGAACATTGGGACAATTGGTCGTTCAAAAACATTCATCCTCTTACTGCAAGTTTATCTGGGTA
2321 CTTTTACCTGTGTGTTCAAAGGCATTTCTTTTCAGCAGTGATCATTATAACTTCACAAAAAAAGATGCTGACGGATTTAC
2401 TTACAGGGCCTTAATGTTATTTTGTCCCAGCCAACACCCTCTAGGTCCTAAAAGTCAAGGTACTTCAGTTTATTTGGCAA
2481 ACATGACAACATTTTTTTTGGCCCTGGGCCCAACAGTTTGTACTTCATGAAACATATTGTACATTTTACATAGTTTAATT
2561 TAAAAAATACCTTTTAAGCTAGTTGATCTTTGACTGTCTTATTTATTATAACCTTTCAGCACATTCCAAGGTTTTAGTTA
2641 CTCAGGAAGGAGTTAATTAAAATGATTTTATTTTGGTCTGATGGATGTTTTTTAAAAGGAAAATTATTATTATGAACCTT
2721 CAGCCTACTTTCTTGAGTGCCGTAAAAGTGCTTGTAAATCTTTTTTTTTTTTTAAGAAGAAAGAAAAAAATGGTGTTTGA
2801 CGTTGATGGAAATTCAAAAATATATATGGAACTGAAACATTAACTTAGCTAAAATAAAAGCAATCTGTGTTTGAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ugACGUCGGAA--CUGGAGGGUc 5'
            ||:  :|||   |||||||| 
Target 5' taTGTCTTCTTTCCACCTCCCAc 3'
1432 - 1454 153.00 -15.40
2
miRNA  3' ugacGUCGGAAC---UGGAGGGUc 5'
              |||||| |   ||||::|| 
Target 5' tccaCAGCCTGGAGTACCTTTCAa 3'
781 - 804 133.00 -17.70
3
miRNA  3' ugACGUCGG--A-ACU-------GGAGGGUc 5'
            |||| ||  | |||       :|||||| 
Target 5' ttTGCACCCAATATGAAACATCTTCTCCCAa 3'
978 - 1008 133.00 -14.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31560838 12 COSMIC
COSN30493933 22 COSMIC
COSN31578199 32 COSMIC
COSN30469153 33 COSMIC
COSN30464872 34 COSMIC
COSN512103 45 COSMIC
COSN31483229 58 COSMIC
COSN31559381 91 COSMIC
COSN26508849 110 COSMIC
COSN30493130 121 COSMIC
COSN31489734 157 COSMIC
COSN21822242 319 COSMIC
COSN22273950 388 COSMIC
COSN2147002 824 COSMIC
COSN5084555 973 COSMIC
COSN2147003 1098 COSMIC
COSN17183118 1412 COSMIC
COSN23313422 1646 COSMIC
COSN6308259 1666 COSMIC
COSN31608027 1783 COSMIC
COSN5623752 1836 COSMIC
COSN31536689 1850 COSMIC
COSN31570197 2533 COSMIC
COSN31585655 2620 COSMIC
COSN26538358 2665 COSMIC
COSN31576090 2710 COSMIC
COSN29017414 2774 COSMIC
COSN2484832 2793 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1237564843 1 dbSNP
rs1196679604 14 dbSNP
rs368122106 19 dbSNP
rs371281097 20 dbSNP
rs1385222043 21 dbSNP
rs572972906 23 dbSNP
rs1160691734 24 dbSNP
rs1406012577 28 dbSNP
rs1395881170 32 dbSNP
rs765366621 33 dbSNP
rs752848129 40 dbSNP
rs1408389071 46 dbSNP
rs146401467 49 dbSNP
rs1467703999 49 dbSNP
rs868531280 49 dbSNP
rs926973575 50 dbSNP
rs577850182 51 dbSNP
rs1472903806 74 dbSNP
rs1369795941 83 dbSNP
rs1179247639 90 dbSNP
rs1436661014 91 dbSNP
rs1238251466 94 dbSNP
rs1325757615 95 dbSNP
rs1038088660 106 dbSNP
rs1467123606 108 dbSNP
rs1272281128 114 dbSNP
rs1034158349 121 dbSNP
rs1358232377 122 dbSNP
rs1224263827 125 dbSNP
rs1268028197 132 dbSNP
rs1237160143 137 dbSNP
rs865873190 143 dbSNP
rs1335242166 147 dbSNP
rs895580692 150 dbSNP
rs1013977741 151 dbSNP
rs775772610 157 dbSNP
rs994974091 158 dbSNP
rs1016545363 165 dbSNP
rs760077413 165 dbSNP
rs1469365687 179 dbSNP
rs1450623373 182 dbSNP
rs1180016840 186 dbSNP
rs886628065 193 dbSNP
rs1452068952 197 dbSNP
rs1196838729 199 dbSNP
rs1009148796 204 dbSNP
rs1222238043 205 dbSNP
rs1453047774 209 dbSNP
rs375991711 214 dbSNP
rs56334354 215 dbSNP
rs996135040 216 dbSNP
rs1361959087 218 dbSNP
rs1242356593 224 dbSNP
rs1455306831 225 dbSNP
rs1368896586 228 dbSNP
rs1158872056 244 dbSNP
rs1389754600 250 dbSNP
rs1422590142 265 dbSNP
rs1301507294 270 dbSNP
rs1347670618 277 dbSNP
rs1405598040 281 dbSNP
rs1316749849 283 dbSNP
rs1287844405 284 dbSNP
rs1463936113 292 dbSNP
rs1360725468 293 dbSNP
rs1033029332 301 dbSNP
rs1432263562 304 dbSNP
rs922076445 307 dbSNP
rs1393964141 309 dbSNP
rs1191700539 315 dbSNP
rs1479001665 324 dbSNP
rs957439262 332 dbSNP
rs753061766 337 dbSNP
rs933409113 343 dbSNP
rs114080135 358 dbSNP
rs1488511382 365 dbSNP
rs1286947922 379 dbSNP
rs1219087312 399 dbSNP
rs1345732259 418 dbSNP
rs1278083808 420 dbSNP
rs575400298 434 dbSNP
rs1261610311 436 dbSNP
rs1356083340 450 dbSNP
rs1370417302 454 dbSNP
rs544272044 456 dbSNP
rs1293456289 470 dbSNP
rs946097902 470 dbSNP
rs1299584081 473 dbSNP
rs564074510 479 dbSNP
rs1374308319 480 dbSNP
rs1176217246 489 dbSNP
rs904455376 490 dbSNP
rs981350008 494 dbSNP
rs927206798 495 dbSNP
rs1477990468 496 dbSNP
rs1265062434 501 dbSNP
rs936969074 507 dbSNP
rs1180769987 508 dbSNP
rs973744986 514 dbSNP
rs114163755 515 dbSNP
rs1236949855 530 dbSNP
rs929690732 533 dbSNP
rs1046883844 534 dbSNP
rs1210862528 541 dbSNP
rs1314048216 545 dbSNP
rs1271435644 549 dbSNP
rs1218570742 550 dbSNP
rs1319031569 551 dbSNP
rs1367881840 556 dbSNP
rs1412514976 571 dbSNP
rs1055642160 591 dbSNP
rs1442520123 601 dbSNP
rs895613598 601 dbSNP
rs1352273368 603 dbSNP
rs886601382 609 dbSNP
rs1165281124 613 dbSNP
rs1025429099 619 dbSNP
rs944877184 619 dbSNP
rs886847592 620 dbSNP
rs1162580310 625 dbSNP
rs767746967 625 dbSNP
rs540587646 627 dbSNP
rs1182679894 634 dbSNP
rs900768522 638 dbSNP
rs1231317809 639 dbSNP
rs560812275 644 dbSNP
rs1458644685 649 dbSNP
rs1231797449 651 dbSNP
rs1321521216 654 dbSNP
rs1312914549 655 dbSNP
rs763663257 656 dbSNP
rs751076752 666 dbSNP
rs1229677817 670 dbSNP
rs893179050 676 dbSNP
rs1330162403 679 dbSNP
rs756853245 686 dbSNP
rs182934962 688 dbSNP
rs542799159 699 dbSNP
rs1323835894 700 dbSNP
rs780896292 713 dbSNP
rs75605119 722 dbSNP
rs1350262545 730 dbSNP
rs754013903 745 dbSNP
rs1165745781 760 dbSNP
rs971217367 764 dbSNP
rs562685970 766 dbSNP
rs1029196927 767 dbSNP
rs187562880 772 dbSNP
rs981702628 777 dbSNP
rs1405860318 779 dbSNP
rs568114215 781 dbSNP
rs958596335 798 dbSNP
rs1244192143 814 dbSNP
rs1317641713 818 dbSNP
rs1359642137 821 dbSNP
rs1488321292 822 dbSNP
rs1266466485 824 dbSNP
rs913339577 829 dbSNP
rs765219067 830 dbSNP
rs571564613 852 dbSNP
rs919587076 855 dbSNP
rs1301081490 858 dbSNP
rs1386208419 860 dbSNP
rs536146482 862 dbSNP
rs937242409 863 dbSNP
rs1459613564 878 dbSNP
rs527655060 881 dbSNP
rs1158294476 882 dbSNP
rs1055761526 886 dbSNP
rs546604061 889 dbSNP
rs1382251721 897 dbSNP
rs982518225 911 dbSNP
rs1459949032 918 dbSNP
rs1268464368 924 dbSNP
rs1185149666 928 dbSNP
rs1193321061 937 dbSNP
rs566742030 949 dbSNP
rs1485112076 951 dbSNP
rs1284799722 960 dbSNP
rs912301708 962 dbSNP
rs1355226425 971 dbSNP
rs751522627 971 dbSNP
rs192505829 973 dbSNP
rs1169999377 975 dbSNP
rs1331651855 983 dbSNP
rs1303361387 984 dbSNP
rs1371612120 985 dbSNP
rs944868158 988 dbSNP
rs1005685435 989 dbSNP
rs1362520510 991 dbSNP
rs1040930912 993 dbSNP
rs1038049325 997 dbSNP
rs1298854649 1006 dbSNP
rs756069137 1012 dbSNP
rs779880759 1015 dbSNP
rs1054669061 1017 dbSNP
rs1193917787 1021 dbSNP
rs749050040 1027 dbSNP
rs1489095171 1031 dbSNP
rs893107217 1031 dbSNP
rs1339031107 1034 dbSNP
rs772269680 1036 dbSNP
rs777887333 1039 dbSNP
rs1257628744 1041 dbSNP
rs535686468 1047 dbSNP
rs555597882 1056 dbSNP
rs907296451 1060 dbSNP
rs1292972530 1062 dbSNP
rs1002985920 1063 dbSNP
rs1029228208 1063 dbSNP
rs1308932380 1065 dbSNP
rs747039880 1067 dbSNP
rs1034577116 1069 dbSNP
rs1009083870 1082 dbSNP
rs958565046 1092 dbSNP
rs770968829 1095 dbSNP
rs1254925032 1096 dbSNP
rs569026452 1098 dbSNP
rs1020840516 1100 dbSNP
rs537949496 1105 dbSNP
rs1459881226 1114 dbSNP
rs1205485194 1120 dbSNP
rs1423330902 1125 dbSNP
rs967494234 1126 dbSNP
rs57237482 1127 dbSNP
rs1366302672 1128 dbSNP
rs1184609593 1136 dbSNP
rs760024175 1139 dbSNP
rs950988812 1141 dbSNP
rs1430547726 1146 dbSNP
rs926057590 1149 dbSNP
rs1428694903 1155 dbSNP
rs1196659045 1158 dbSNP
rs1457297767 1161 dbSNP
rs982873473 1184 dbSNP
rs1468360664 1189 dbSNP
rs958731430 1195 dbSNP
rs1220193021 1205 dbSNP
rs1407537187 1208 dbSNP
rs1282578386 1212 dbSNP
rs1244427101 1222 dbSNP
rs1341130959 1225 dbSNP
rs1315000241 1227 dbSNP
rs1445175597 1231 dbSNP
rs991477056 1238 dbSNP
rs912284987 1239 dbSNP
rs1467456763 1240 dbSNP
rs1389030060 1249 dbSNP
rs575848003 1253 dbSNP
rs577589735 1255 dbSNP
rs538800292 1263 dbSNP
rs949924982 1263 dbSNP
rs1363580523 1265 dbSNP
rs1176280872 1270 dbSNP
rs1438571297 1273 dbSNP
rs975230224 1284 dbSNP
rs1200462569 1287 dbSNP
rs1449653760 1288 dbSNP
rs1288957958 1289 dbSNP
rs1363574661 1295 dbSNP
rs867687849 1306 dbSNP
rs922096083 1311 dbSNP
rs1357371455 1318 dbSNP
rs537309986 1322 dbSNP
rs1320787497 1326 dbSNP
rs1038560730 1328 dbSNP
rs1224877171 1328 dbSNP
rs1054598897 1330 dbSNP
rs899578072 1337 dbSNP
rs554204060 1338 dbSNP
rs946040933 1339 dbSNP
rs1316304919 1340 dbSNP
rs1449734795 1343 dbSNP
rs758145849 1346 dbSNP
rs907223464 1354 dbSNP
rs1009528063 1357 dbSNP
rs1486936020 1361 dbSNP
rs574267961 1362 dbSNP
rs1268522678 1377 dbSNP
rs542862451 1387 dbSNP
rs1418496693 1391 dbSNP
rs1380453938 1406 dbSNP
rs1180421651 1412 dbSNP
rs1477030613 1414 dbSNP
rs967988166 1432 dbSNP
rs1199257921 1439 dbSNP
rs1201735591 1456 dbSNP
rs1055915501 1465 dbSNP
rs1430558636 1466 dbSNP
rs182837870 1479 dbSNP
rs1271248497 1482 dbSNP
rs1157302681 1483 dbSNP
rs1353073127 1489 dbSNP
rs1286903040 1490 dbSNP
rs1347322025 1509 dbSNP
rs1343536833 1511 dbSNP
rs1454690151 1512 dbSNP
rs1274804726 1525 dbSNP
rs1437567054 1533 dbSNP
rs763756150 1538 dbSNP
rs1000362642 1539 dbSNP
rs1033126111 1539 dbSNP
rs995341412 1540 dbSNP
rs1026878931 1546 dbSNP
rs1360582875 1547 dbSNP
rs751237816 1549 dbSNP
rs1004157592 1550 dbSNP
rs1424317496 1562 dbSNP
rs1173105107 1563 dbSNP
rs574147544 1571 dbSNP
rs542857300 1577 dbSNP
rs147347009 1578 dbSNP
rs565356448 1583 dbSNP
rs1283397507 1586 dbSNP
rs975534641 1598 dbSNP
rs1372458873 1600 dbSNP
rs1222014260 1601 dbSNP
rs761595365 1609 dbSNP
rs1220318981 1622 dbSNP
rs1317279417 1626 dbSNP
rs1326088887 1632 dbSNP
rs1221534273 1635 dbSNP
rs1276758892 1644 dbSNP
rs921031081 1645 dbSNP
rs1291277990 1648 dbSNP
rs1489930636 1655 dbSNP
rs953525911 1661 dbSNP
rs990292815 1664 dbSNP
rs1470011788 1669 dbSNP
rs187743603 1674 dbSNP
rs946270745 1700 dbSNP
rs1478041366 1711 dbSNP
rs750007049 1714 dbSNP
rs1188515901 1718 dbSNP
rs1471811850 1724 dbSNP
rs1237037154 1728 dbSNP
rs1211416679 1731 dbSNP
rs1463083985 1741 dbSNP
rs1420025717 1746 dbSNP
rs1163387539 1753 dbSNP
rs1363279896 1755 dbSNP
rs928616171 1757 dbSNP
rs1198353403 1761 dbSNP
rs938701351 1769 dbSNP
rs1426179526 1774 dbSNP
rs1297196366 1789 dbSNP
rs1055848256 1793 dbSNP
rs1377789294 1810 dbSNP
rs1284328554 1814 dbSNP
rs756021394 1838 dbSNP
rs547759248 1839 dbSNP
rs1330616842 1843 dbSNP
rs1439470603 1843 dbSNP
rs1048244392 1844 dbSNP
rs886980793 1849 dbSNP
rs1004530527 1851 dbSNP
rs1019535898 1855 dbSNP
rs750523689 1871 dbSNP
rs1422338923 1875 dbSNP
rs1413129180 1877 dbSNP
rs965377050 1881 dbSNP
rs996545844 1888 dbSNP
rs1244926041 1889 dbSNP
rs1312671435 1892 dbSNP
rs1446545973 1894 dbSNP
rs1028002780 1897 dbSNP
rs1178577851 1898 dbSNP
rs566699830 1902 dbSNP
rs1253507597 1915 dbSNP
rs1248447136 1917 dbSNP
rs1033157403 1918 dbSNP
rs1290182069 1919 dbSNP
rs1247471236 1925 dbSNP
rs41288427 1944 dbSNP
rs1202579776 1945 dbSNP
rs1021743533 1946 dbSNP
rs1375230124 1949 dbSNP
rs192882449 1950 dbSNP
rs144919030 1952 dbSNP
rs928905655 1953 dbSNP
rs938657960 1957 dbSNP
rs982789298 1971 dbSNP
rs1426559521 1972 dbSNP
rs1015949831 1973 dbSNP
rs1158561687 1975 dbSNP
rs962633684 1976 dbSNP
rs1253059765 1977 dbSNP
rs754749264 1982 dbSNP
rs778722130 1983 dbSNP
rs1194658074 1984 dbSNP
rs931383818 1986 dbSNP
rs1224257359 1988 dbSNP
rs1048545522 1993 dbSNP
rs1284757581 1998 dbSNP
rs886908032 2000 dbSNP
rs1318612273 2003 dbSNP
rs372036659 2019 dbSNP
rs1418416815 2020 dbSNP
rs1385956758 2023 dbSNP
rs1368050877 2031 dbSNP
rs939872393 2045 dbSNP
rs1330346898 2048 dbSNP
rs1407058602 2056 dbSNP
rs1423262351 2059 dbSNP
rs1042037765 2067 dbSNP
rs1041338316 2069 dbSNP
rs1454398514 2074 dbSNP
rs1366004563 2075 dbSNP
rs1174591476 2083 dbSNP
rs1451838485 2089 dbSNP
rs903451977 2097 dbSNP
rs1334370149 2098 dbSNP
rs200038669 2105 dbSNP
rs147943299 2106 dbSNP
rs1201116940 2108 dbSNP
rs1453177562 2111 dbSNP
rs139335770 2119 dbSNP
rs1216640742 2120 dbSNP
rs1339024791 2128 dbSNP
rs1212838235 2133 dbSNP
rs1027929085 2136 dbSNP
rs1275226028 2140 dbSNP
rs1319131286 2141 dbSNP
rs1486569291 2141 dbSNP
rs1203583015 2145 dbSNP
rs894611048 2152 dbSNP
rs1241895575 2153 dbSNP
rs1285016766 2161 dbSNP
rs1462921785 2171 dbSNP
rs1188735789 2179 dbSNP
rs893511131 2185 dbSNP
rs1297839501 2190 dbSNP
rs375193637 2199 dbSNP
rs1024423532 2203 dbSNP
rs540757970 2206 dbSNP
rs150013018 2211 dbSNP
rs1301601813 2212 dbSNP
rs560983720 2214 dbSNP
rs1015564240 2221 dbSNP
rs376326248 2227 dbSNP
rs967909895 2229 dbSNP
rs1477059929 2231 dbSNP
rs962955402 2233 dbSNP
rs1193461074 2237 dbSNP
rs1468892213 2238 dbSNP
rs1174160629 2239 dbSNP
rs1408273093 2244 dbSNP
rs1253541241 2252 dbSNP
rs973922162 2255 dbSNP
rs977635395 2258 dbSNP
rs1036324459 2265 dbSNP
rs960305021 2271 dbSNP
rs78956649 2274 dbSNP
rs915907246 2276 dbSNP
rs145231438 2279 dbSNP
rs781190847 2280 dbSNP
rs1272217315 2285 dbSNP
rs1228514043 2290 dbSNP
rs1328260380 2294 dbSNP
rs111552940 2296 dbSNP
rs1310726998 2297 dbSNP
rs184893437 2301 dbSNP
rs770299231 2306 dbSNP
rs1223036655 2321 dbSNP
rs775887441 2325 dbSNP
rs1261786465 2336 dbSNP
rs542925904 2343 dbSNP
rs1167243320 2347 dbSNP
rs565260454 2356 dbSNP
rs924940661 2358 dbSNP
rs908643550 2365 dbSNP
rs556408633 2371 dbSNP
rs1366172739 2385 dbSNP
rs1186172893 2390 dbSNP
rs149158531 2393 dbSNP
rs145018728 2394 dbSNP
rs1263523606 2395 dbSNP
rs1457150510 2402 dbSNP
rs1273518476 2403 dbSNP
rs901026711 2419 dbSNP
rs188767906 2423 dbSNP
rs1341780449 2438 dbSNP
rs1263924828 2440 dbSNP
rs948887869 2457 dbSNP
rs1045907076 2460 dbSNP
rs1317773425 2461 dbSNP
rs1431296658 2462 dbSNP
rs572497865 2465 dbSNP
rs1466507299 2475 dbSNP
rs1376605918 2482 dbSNP
rs1157715626 2484 dbSNP
rs1049665376 2488 dbSNP
rs1382507619 2490 dbSNP
rs11330840 2492 dbSNP
rs796445778 2492 dbSNP
rs893437742 2492 dbSNP
rs1402290109 2513 dbSNP
rs1320508497 2515 dbSNP
rs530964929 2517 dbSNP
rs1424666210 2533 dbSNP
rs1010528692 2540 dbSNP
rs1404371693 2554 dbSNP
rs1156757853 2561 dbSNP
rs1233212333 2562 dbSNP
rs1439059709 2562 dbSNP
rs1183661694 2568 dbSNP
rs1449671281 2569 dbSNP
rs1021098976 2582 dbSNP
rs1037441825 2591 dbSNP
rs1347879176 2606 dbSNP
rs1360245278 2609 dbSNP
rs1238575136 2613 dbSNP
rs1353571114 2614 dbSNP
rs541119636 2617 dbSNP
rs561342882 2625 dbSNP
rs1241546520 2631 dbSNP
rs1234606129 2637 dbSNP
rs1322464235 2641 dbSNP
rs1405239415 2647 dbSNP
rs1366870088 2653 dbSNP
rs1295852266 2659 dbSNP
rs902272902 2660 dbSNP
rs532775004 2676 dbSNP
rs995457954 2681 dbSNP
rs767288309 2682 dbSNP
rs1028225035 2688 dbSNP
rs1376915742 2722 dbSNP
rs146783987 2731 dbSNP
rs953947505 2740 dbSNP
rs1035843982 2743 dbSNP
rs1214485530 2752 dbSNP
rs1446510372 2753 dbSNP
rs1285481699 2757 dbSNP
rs1226040587 2759 dbSNP
rs1343296406 2761 dbSNP
rs36118825 2761 dbSNP
rs878890842 2761 dbSNP
rs1286247518 2770 dbSNP
rs1346961221 2772 dbSNP
rs1275929056 2773 dbSNP
rs202102461 2774 dbSNP
rs1345338545 2775 dbSNP
rs1490093262 2777 dbSNP
rs1219558667 2780 dbSNP
rs1401201634 2781 dbSNP
rs1270425922 2783 dbSNP
rs1433336767 2784 dbSNP
rs1481309862 2791 dbSNP
rs1180986396 2793 dbSNP
rs1191781125 2798 dbSNP
rs1019415085 2802 dbSNP
rs960229473 2803 dbSNP
rs116142102 2804 dbSNP
rs1159064093 2813 dbSNP
rs531572711 2814 dbSNP
rs1424282969 2816 dbSNP
rs925024170 2819 dbSNP
rs1326110410 2822 dbSNP
rs749886316 2833 dbSNP
rs984137029 2840 dbSNP
rs957727346 2842 dbSNP
rs1387481897 2866 dbSNP
rs1271473490 2871 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ugacgucGGAA-CUGGAGGGUc 5'
                 |:||  |||||||| 
Target 5' -------CUUUCCACCUCCCAc 3'
1 - 15
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000367463.4 | 3UTR | CUUUCCACCUCCCACUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
494 hsa-miR-1273h-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT074355 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT100721 TJAP1 tight junction associated protein 1 2 2
MIRT115545 MAZ MYC associated zinc finger protein 2 2
MIRT124982 XIAP X-linked inhibitor of apoptosis 2 4
MIRT139911 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT177183 ARL5B ADP ribosylation factor like GTPase 5B 2 4
MIRT187994 MBD6 methyl-CpG binding domain protein 6 2 2
MIRT207410 MAT2A methionine adenosyltransferase 2A 2 6
MIRT241928 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT260110 KLHL21 kelch like family member 21 2 2
MIRT260358 XRCC6 X-ray repair cross complementing 6 2 6
MIRT266428 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT294663 ZNF548 zinc finger protein 548 2 2
MIRT351039 PLEKHB2 pleckstrin homology domain containing B2 2 2
MIRT379943 PRRG4 proline rich and Gla domain 4 2 2
MIRT398983 KAT7 lysine acetyltransferase 7 2 2
MIRT441465 BEST3 bestrophin 3 2 2
MIRT446750 ZNF491 zinc finger protein 491 2 2
MIRT449224 RAD51B RAD51 paralog B 2 2
MIRT450623 AQR aquarius intron-binding spliceosomal factor 2 2
MIRT451090 ZNF584 zinc finger protein 584 2 2
MIRT451558 CIAPIN1 cytokine induced apoptosis inhibitor 1 2 2
MIRT451736 CES3 carboxylesterase 3 2 2
MIRT452411 QDPR quinoid dihydropteridine reductase 2 2
MIRT452559 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT452851 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT452922 DISC1 disrupted in schizophrenia 1 2 2
MIRT453043 TANGO2 transport and golgi organization 2 homolog 2 4
MIRT453097 HOXC4 homeobox C4 2 2
MIRT453297 ZNF394 zinc finger protein 394 2 2
MIRT453593 ZNF557 zinc finger protein 557 2 2
MIRT453787 KBTBD12 kelch repeat and BTB domain containing 12 2 2
MIRT453987 CECR1 adenosine deaminase 2 2 2
MIRT454083 TMEM209 transmembrane protein 209 2 2
MIRT454652 FBXL18 F-box and leucine rich repeat protein 18 2 2
MIRT454753 PFKFB3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 2 2
MIRT455311 TTLL9 tubulin tyrosine ligase like 9 2 2
MIRT456468 SERAC1 serine active site containing 1 2 2
MIRT456554 TOMM20 translocase of outer mitochondrial membrane 20 2 2
MIRT456716 TMEM239 transmembrane protein 239 2 4
MIRT456796 SIGLEC14 sialic acid binding Ig like lectin 14 2 2
MIRT457487 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457999 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT458130 TLCD2 TLC domain containing 2 2 2
MIRT459027 ZNF490 zinc finger protein 490 2 4
MIRT459119 FADS6 fatty acid desaturase 6 2 2
MIRT459315 HAVCR2 hepatitis A virus cellular receptor 2 2 2
MIRT459385 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT459412 FAM83B family with sequence similarity 83 member B 2 2
MIRT459974 RFT1 RFT1 homolog 2 2
MIRT460480 FAM105A family with sequence similarity 105 member A 2 6
MIRT460586 FEM1A fem-1 homolog A 2 2
MIRT460920 NOA1 nitric oxide associated 1 2 4
MIRT461072 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT461590 DPH2 DPH2 homolog 2 2
MIRT461854 ZNF317 zinc finger protein 317 2 2
MIRT462176 ACADL acyl-CoA dehydrogenase, long chain 2 2
MIRT462446 GCDH glutaryl-CoA dehydrogenase 2 2
MIRT463854 WNT7B Wnt family member 7B 2 2
MIRT464310 UST uronyl 2-sulfotransferase 2 2
MIRT464815 UBE2B ubiquitin conjugating enzyme E2 B 2 2
MIRT465453 TOR2A torsin family 2 member A 2 2
MIRT466073 TMEM184C transmembrane protein 184C 2 2
MIRT466514 TBXA2R thromboxane A2 receptor 2 2
MIRT467072 SRRD SRR1 domain containing 2 2
MIRT469551 RARA retinoic acid receptor alpha 2 2
MIRT469741 RAB2B RAB2B, member RAS oncogene family 2 2
MIRT470759 PNPLA6 patatin like phospholipase domain containing 6 2 2
MIRT470875 PLXND1 plexin D1 2 2
MIRT470976 PITPNA phosphatidylinositol transfer protein alpha 2 2
MIRT471048 PIM3 Pim-3 proto-oncogene, serine/threonine kinase 2 2
MIRT471215 PHAX phosphorylated adaptor for RNA export 2 2
MIRT471246 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT471286 PGAM4 phosphoglycerate mutase family member 4 2 2
MIRT471467 PDE7B phosphodiesterase 7B 2 2
MIRT473069 MORN4 MORN repeat containing 4 2 4
MIRT473989 LRRC20 leucine rich repeat containing 20 2 2
MIRT474518 KLHDC8A kelch domain containing 8A 2 2
MIRT474990 KANSL1 KAT8 regulatory NSL complex subunit 1 2 2
MIRT475547 HNRNPUL1 heterogeneous nuclear ribonucleoprotein U like 1 2 2
MIRT476350 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT477298 EPHB2 EPH receptor B2 2 2
MIRT477933 DPM2 dolichyl-phosphate mannosyltransferase subunit 2, regulatory 2 2
MIRT478282 DDX19A DEAD-box helicase 19A 2 4
MIRT478472 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT478559 CTNND1 catenin delta 1 2 2
MIRT478618 CTDNEP1 CTD nuclear envelope phosphatase 1 2 2
MIRT478834 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT479007 COL5A1 collagen type V alpha 1 chain 2 2
MIRT479166 CLSPN claspin 2 2
MIRT482454 ADAR adenosine deaminase, RNA specific 2 4
MIRT483019 KHSRP KH-type splicing regulatory protein 2 4
MIRT483798 CYP2W1 cytochrome P450 family 2 subfamily W member 1 2 6
MIRT486087 SLC7A5 solute carrier family 7 member 5 2 4
MIRT486304 SIPA1 signal-induced proliferation-associated 1 2 2
MIRT486490 MYH11 myosin heavy chain 11 2 2
MIRT486881 TSPYL4 TSPY like 4 2 2
MIRT487125 NCOR2 nuclear receptor corepressor 2 2 2
MIRT487542 TM6SF2 transmembrane 6 superfamily member 2 2 4
MIRT487676 B3GALT5 beta-1,3-galactosyltransferase 5 2 4
MIRT489251 TTLL1 tubulin tyrosine ligase like 1 2 4
MIRT489276 RBM8A RNA binding motif protein 8A 2 8
MIRT489496 CRLF3 cytokine receptor like factor 3 2 4
MIRT489571 SSBP2 single stranded DNA binding protein 2 2 2
MIRT489694 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT490166 TMEM63C transmembrane protein 63C 2 2
MIRT491199 MLLT1 MLLT1, super elongation complex subunit 2 4
MIRT491260 DHX40 DEAH-box helicase 40 2 2
MIRT491385 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT491548 YAE1D1 Yae1 domain containing 1 2 2
MIRT492722 PHF12 PHD finger protein 12 2 2
MIRT493866 FAM73B mitoguardin 2 2 4
MIRT494549 BAK1 BCL2 antagonist/killer 1 2 2
MIRT498586 KRT8 keratin 8 2 2
MIRT498722 SNTN sentan, cilia apical structure protein 2 6
MIRT499982 HIST1H2BD histone cluster 1 H2B family member d 2 4
MIRT503414 SLC25A45 solute carrier family 25 member 45 2 6
MIRT508491 FTO FTO, alpha-ketoglutarate dependent dioxygenase 2 2
MIRT508877 METTL14 methyltransferase like 14 2 2
MIRT509622 RRP7A ribosomal RNA processing 7 homolog A 2 4
MIRT510104 IRAK3 interleukin 1 receptor associated kinase 3 2 8
MIRT510139 PDGFRA platelet derived growth factor receptor alpha 2 4
MIRT510353 ZNF703 zinc finger protein 703 2 6
MIRT510620 TMEM167A transmembrane protein 167A 2 4
MIRT510786 SF3B3 splicing factor 3b subunit 3 2 6
MIRT511021 NRF1 nuclear respiratory factor 1 2 2
MIRT513925 GHITM growth hormone inducible transmembrane protein 2 2
MIRT514342 DNAH17 dynein axonemal heavy chain 17 2 4
MIRT515015 SUMF2 sulfatase modifying factor 2 2 2
MIRT515246 DUSP28 dual specificity phosphatase 28 2 2
MIRT516202 RPP30 ribonuclease P/MRP subunit p30 2 2
MIRT516435 ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 motif 4 2 4
MIRT516666 ZNF860 zinc finger protein 860 2 4
MIRT518373 ZNF250 zinc finger protein 250 2 2
MIRT518930 LSG1 large 60S subunit nuclear export GTPase 1 2 2
MIRT519676 ZNF70 zinc finger protein 70 2 2
MIRT519902 ZFAND4 zinc finger AN1-type containing 4 2 4
MIRT519945 ZCCHC8 zinc finger CCHC-type containing 8 2 2
MIRT520321 UBXN2A UBX domain protein 2A 2 2
MIRT520606 TMEM41B transmembrane protein 41B 2 2
MIRT520663 TMEM11 transmembrane protein 11 2 2
MIRT520852 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT521443 RAD51 RAD51 recombinase 2 2
MIRT521671 PRKAR2A protein kinase cAMP-dependent type II regulatory subunit alpha 2 2
MIRT522281 NKAP NFKB activating protein 2 2
MIRT522333 NCKIPSD NCK interacting protein with SH3 domain 2 8
MIRT522535 MED28 mediator complex subunit 28 2 6
MIRT523478 GNG4 G protein subunit gamma 4 2 2
MIRT523672 FOPNL FGFR1OP N-terminal like 2 2
MIRT523715 FBXW2 F-box and WD repeat domain containing 2 2 4
MIRT523867 ESCO2 establishment of sister chromatid cohesion N-acetyltransferase 2 2 4
MIRT524043 DNAJC8 DnaJ heat shock protein family (Hsp40) member C8 2 2
MIRT524167 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT524928 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT526825 PHC1 polyhomeotic homolog 1 2 2
MIRT531017 TDGF1P3 teratocarcinoma-derived growth factor 1 pseudogene 3 2 2
MIRT536085 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT540681 BMP3 bone morphogenetic protein 3 2 2
MIRT541708 TMEM33 transmembrane protein 33 2 2
MIRT541755 KLF8 Kruppel like factor 8 2 2
MIRT541888 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT545714 SPTLC2 serine palmitoyltransferase long chain base subunit 2 2 2
MIRT559054 C19orf47 chromosome 19 open reading frame 47 2 4
MIRT561748 PLAGL2 PLAG1 like zinc finger 2 2 2
MIRT562365 ETV3 ETS variant 3 2 2
MIRT562821 GCFC2 GC-rich sequence DNA-binding factor 2 2 2
MIRT562900 DNAH10OS dynein axonemal heavy chain 10 opposite strand 2 2
MIRT564452 SLC35E2 solute carrier family 35 member E2 2 5
MIRT569111 ONECUT3 one cut homeobox 3 2 2
MIRT569224 SUSD1 sushi domain containing 1 2 2
MIRT570271 ARPC3 actin related protein 2/3 complex subunit 3 2 2
MIRT570498 TFIP11 tuftelin interacting protein 11 2 2
MIRT570844 GPRC5C G protein-coupled receptor class C group 5 member C 2 2
MIRT571311 TPCN2 two pore segment channel 2 2 2
MIRT572077 EXOC8 exocyst complex component 8 2 2
MIRT572116 DNAJC24 DnaJ heat shock protein family (Hsp40) member C24 2 2
MIRT573054 TRIB1 tribbles pseudokinase 1 2 2
MIRT573483 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT573656 HES6 hes family bHLH transcription factor 6 2 2
MIRT574343 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT576494 Slc35e2 solute carrier family 35, member E2 2 4
MIRT608033 UBLCP1 ubiquitin like domain containing CTD phosphatase 1 2 2
MIRT611326 NANOS1 nanos C2HC-type zinc finger 1 2 2
MIRT613660 KIAA1210 KIAA1210 2 2
MIRT615638 ATF6 activating transcription factor 6 2 2
MIRT618573 RRAD RRAD, Ras related glycolysis inhibitor and calcium channel regulator 2 2
MIRT618865 MBL2 mannose binding lectin 2 2 2
MIRT618962 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT619172 SLC16A4 solute carrier family 16 member 4 2 2
MIRT620298 AQP6 aquaporin 6 2 2
MIRT620683 RFTN2 raftlin family member 2 2 2
MIRT621637 UBXN2B UBX domain protein 2B 2 2
MIRT621993 STK4 serine/threonine kinase 4 2 2
MIRT622421 NUDT19 nudix hydrolase 19 2 2
MIRT622804 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 4
MIRT624786 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 2
MIRT624968 ZNF665 zinc finger protein 665 2 4
MIRT625479 SMAD9 SMAD family member 9 2 2
MIRT626594 ACAA2 acetyl-CoA acyltransferase 2 2 4
MIRT626708 TRIM65 tripartite motif containing 65 2 2
MIRT626975 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT627489 STRIP2 striatin interacting protein 2 2 2
MIRT628505 ZNF878 zinc finger protein 878 2 2
MIRT628533 ZNF701 zinc finger protein 701 2 2
MIRT628591 TMEM251 transmembrane protein 251 2 2
MIRT628818 SLC25A34 solute carrier family 25 member 34 2 2
MIRT628896 IGSF6 immunoglobulin superfamily member 6 2 2
MIRT628958 UBE2D4 ubiquitin conjugating enzyme E2 D4 (putative) 2 2
MIRT629005 OSBPL10 oxysterol binding protein like 10 2 2
MIRT629059 KIF1C kinesin family member 1C 2 2
MIRT629192 PAPOLA poly(A) polymerase alpha 2 2
MIRT629346 TMPRSS11BNL TMPRSS11B N-terminal like, pseudogene 2 2
MIRT629447 WIZ widely interspaced zinc finger motifs 2 2
MIRT629696 XKR4 XK related 4 2 2
MIRT629737 SCD5 stearoyl-CoA desaturase 5 2 2
MIRT629896 SPATA5 spermatogenesis associated 5 2 2
MIRT629953 GLP2R glucagon like peptide 2 receptor 2 2
MIRT630023 MTL5 testis expressed metallothionein like protein 2 2
MIRT630181 TLN1 talin 1 2 2
MIRT630325 PAQR5 progestin and adipoQ receptor family member 5 2 2
MIRT630389 MYH9 myosin heavy chain 9 2 4
MIRT630695 EXTL3 exostosin like glycosyltransferase 3 2 2
MIRT631054 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT631130 SYNJ2 synaptojanin 2 2 2
MIRT631374 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT631557 TRAF3IP2 TRAF3 interacting protein 2 2 2
MIRT631615 PCDHB11 protocadherin beta 11 2 2
MIRT631935 CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 2 4
MIRT632109 SSR1 signal sequence receptor subunit 1 2 2
MIRT632168 CCL22 C-C motif chemokine ligand 22 2 2
MIRT632445 SGTB small glutamine rich tetratricopeptide repeat containing beta 2 2
MIRT632652 NAV1 neuron navigator 1 2 2
MIRT632688 MTMR10 myotubularin related protein 10 2 2
MIRT632828 IGF1 insulin like growth factor 1 2 2
MIRT632905 FRRS1 ferric chelate reductase 1 2 2
MIRT633027 DNAL1 dynein axonemal light chain 1 2 2
MIRT633379 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT633440 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT633726 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 2 2
MIRT633832 WHAMM WAS protein homolog associated with actin, golgi membranes and microtubules 2 2
MIRT633862 ATP6V1A ATPase H+ transporting V1 subunit A 2 2
MIRT634042 NUP155 nucleoporin 155 2 2
MIRT634266 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT634374 RAP2B RAP2B, member of RAS oncogene family 2 2
MIRT634439 PDE7A phosphodiesterase 7A 2 2
MIRT634573 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT634620 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT634693 DSEL dermatan sulfate epimerase-like 2 2
MIRT634768 CD3D CD3d molecule 2 2
MIRT635024 WWTR1 WW domain containing transcription regulator 1 2 2
MIRT635384 NHLRC2 NHL repeat containing 2 2 2
MIRT635577 TTC9C tetratricopeptide repeat domain 9C 2 2
MIRT635793 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT635837 ZNF264 zinc finger protein 264 2 2
MIRT636043 ZSCAN29 zinc finger and SCAN domain containing 29 2 4
MIRT636070 ZNF280C zinc finger protein 280C 2 2
MIRT636697 ARSK arylsulfatase family member K 2 2
MIRT637438 ZNF324B zinc finger protein 324B 2 2
MIRT637582 PLD6 phospholipase D family member 6 2 2
MIRT637672 PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D 2 2
MIRT637887 SLC19A3 solute carrier family 19 member 3 2 4
MIRT638353 RBMS2 RNA binding motif single stranded interacting protein 2 2 4
MIRT638597 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT638821 CRTAP cartilage associated protein 2 2
MIRT638871 CEP97 centrosomal protein 97 2 4
MIRT639660 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT640200 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT641592 TNS4 tensin 4 2 2
MIRT644993 POLR2J3 RNA polymerase II subunit J3 2 2
MIRT645059 UQCRQ ubiquinol-cytochrome c reductase complex III subunit VII 2 2
MIRT646948 UPK3BL uroplakin 3B like 1 2 2
MIRT647306 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT648300 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT649043 SLC1A2 solute carrier family 1 member 2 2 2
MIRT649884 SLFN12L schlafen family member 12 like 2 2
MIRT650196 DOCK7 dedicator of cytokinesis 7 2 2
MIRT654789 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655667 NUP43 nucleoporin 43 2 2
MIRT655925 NDUFA4P1 NDUFA4, mitochondrial complex associated pseudogene 1 2 2
MIRT656433 MARCH6 membrane associated ring-CH-type finger 6 2 2
MIRT657713 GPC4 glypican 4 2 2
MIRT659302 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT659844 CAPZB capping actin protein of muscle Z-line beta subunit 2 2
MIRT660660 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT661308 CPM carboxypeptidase M 2 2
MIRT661473 CHMP1B charged multivesicular body protein 1B 2 2
MIRT661906 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT662064 ZNF284 zinc finger protein 284 2 2
MIRT662491 ANGPT4 angiopoietin 4 2 2
MIRT662657 LRRC47 leucine rich repeat containing 47 2 2
MIRT662804 MSRB2 methionine sulfoxide reductase B2 2 2
MIRT663164 FGFR1OP FGFR1 oncogene partner 2 2
MIRT663376 ZNF770 zinc finger protein 770 2 4
MIRT663418 ZNF607 zinc finger protein 607 2 2
MIRT663990 WDR75 WD repeat domain 75 2 2
MIRT664157 APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F 2 4
MIRT664489 POLR3K RNA polymerase III subunit K 2 2
MIRT665058 CCDC77 coiled-coil domain containing 77 2 2
MIRT665080 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT665420 WDR55 WD repeat domain 55 2 2
MIRT665716 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT665923 TBC1D19 TBC1 domain family member 19 2 4
MIRT666239 SLC38A7 solute carrier family 38 member 7 2 4
MIRT666840 PPTC7 PTC7 protein phosphatase homolog 2 2
MIRT667378 MOB1B MOB kinase activator 1B 2 2
MIRT667573 LONRF2 LON peptidase N-terminal domain and ring finger 2 2 2
MIRT667894 ING1 inhibitor of growth family member 1 2 2
MIRT667977 HECTD3 HECT domain E3 ubiquitin protein ligase 3 2 2
MIRT668197 GCNT4 glucosaminyl (N-acetyl) transferase 4, core 2 2 2
MIRT668279 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT668386 FAT3 FAT atypical cadherin 3 2 2
MIRT668444 FAM208A family with sequence similarity 208 member A 2 2
MIRT668998 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT669180 CCNF cyclin F 2 2
MIRT669444 ATL3 atlastin GTPase 3 2 2
MIRT669661 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT669890 KIAA0754 KIAA0754 2 4
MIRT669973 SSR3 signal sequence receptor subunit 3 2 2
MIRT670153 SLC29A4 solute carrier family 29 member 4 2 2
MIRT670240 TRIM13 tripartite motif containing 13 2 2
MIRT670274 CBY3 chibby family member 3 2 2
MIRT670358 ULBP3 UL16 binding protein 3 2 4
MIRT670627 BVES blood vessel epicardial substance 2 2
MIRT670731 HOOK3 hook microtubule tethering protein 3 2 2
MIRT670770 TRIM66 tripartite motif containing 66 2 2
MIRT670913 DESI1 desumoylating isopeptidase 1 2 2
MIRT671216 CLSTN1 calsyntenin 1 2 2
MIRT671398 ERCC6L2 ERCC excision repair 6 like 2 2 2
MIRT671427 TOX4 TOX high mobility group box family member 4 2 2
MIRT671654 TRUB2 TruB pseudouridine synthase family member 2 2 4
MIRT671702 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT672136 PLEKHH1 pleckstrin homology, MyTH4 and FERM domain containing H1 2 2
MIRT672395 SLC10A6 solute carrier family 10 member 6 2 2
MIRT672508 GGCX gamma-glutamyl carboxylase 2 2
MIRT672572 RNF24 ring finger protein 24 2 2
MIRT672789 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT673019 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT673190 C10orf76 chromosome 10 open reading frame 76 2 2
MIRT673372 ZNF124 zinc finger protein 124 2 2
MIRT673495 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 6
MIRT673852 CAPN7 calpain 7 2 2
MIRT673929 ZNF500 zinc finger protein 500 2 2
MIRT673986 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT674076 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT674123 RPL7L1 ribosomal protein L7 like 1 2 2
MIRT674297 THAP5 THAP domain containing 5 2 2
MIRT674370 POLR3D RNA polymerase III subunit D 2 2
MIRT674641 NKRF NFKB repressing factor 2 2
MIRT674665 PLCE1 phospholipase C epsilon 1 2 2
MIRT674725 ZNF451 zinc finger protein 451 2 4
MIRT674779 NPR1 natriuretic peptide receptor 1 2 2
MIRT674889 RASSF9 Ras association domain family member 9 2 2
MIRT675017 SNX1 sorting nexin 1 2 2
MIRT675341 KLHL26 kelch like family member 26 2 2
MIRT675416 CLEC7A C-type lectin domain containing 7A 2 2
MIRT675497 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT675615 EHD2 EH domain containing 2 2 2
MIRT675735 AHR aryl hydrocarbon receptor 2 2
MIRT675857 ATP1B4 ATPase Na+/K+ transporting family member beta 4 2 2
MIRT675990 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676213 TMEM91 transmembrane protein 91 2 2
MIRT676406 MRO maestro 2 2
MIRT677299 CPSF2 cleavage and polyadenylation specific factor 2 2 2
MIRT677387 PCNP PEST proteolytic signal containing nuclear protein 2 2
MIRT677859 ABI2 abl interactor 2 2 2
MIRT677965 ITGB3 integrin subunit beta 3 2 2
MIRT678175 CRCP CGRP receptor component 2 2
MIRT678273 PTRH2 peptidyl-tRNA hydrolase 2 2 2
MIRT678665 SCUBE3 signal peptide, CUB domain and EGF like domain containing 3 2 2
MIRT679003 TTC39B tetratricopeptide repeat domain 39B 2 2
MIRT679053 RMDN1 regulator of microtubule dynamics 1 2 2
MIRT679461 RHOF ras homolog family member F, filopodia associated 2 2
MIRT679513 RAB36 RAB36, member RAS oncogene family 2 2
MIRT679914 ZKSCAN3 zinc finger with KRAB and SCAN domains 3 2 2
MIRT680029 OSBPL2 oxysterol binding protein like 2 2 4
MIRT680245 NDUFA7 NADH:ubiquinone oxidoreductase subunit A7 2 2
MIRT680279 AKIP1 A-kinase interacting protein 1 2 2
MIRT680499 PRIM2 DNA primase subunit 2 2 2
MIRT680586 ZNF573 zinc finger protein 573 2 2
MIRT680629 KIAA1456 KIAA1456 2 2
MIRT680819 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT680998 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 2 2
MIRT681122 INTS7 integrator complex subunit 7 2 2
MIRT681161 IBA57 IBA57 homolog, iron-sulfur cluster assembly 2 2
MIRT681221 DUSP19 dual specificity phosphatase 19 2 2
MIRT681304 IKZF3 IKAROS family zinc finger 3 2 2
MIRT681341 BRI3BP BRI3 binding protein 2 2
MIRT681608 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT681779 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT681892 SLC11A2 solute carrier family 11 member 2 2 2
MIRT682084 ITGA3 integrin subunit alpha 3 2 4
MIRT682139 SMS spermine synthase 2 2
MIRT682217 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT682367 PHACTR4 phosphatase and actin regulator 4 2 2
MIRT682535 EXOSC2 exosome component 2 2 2
MIRT682618 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT683643 ZNF695 zinc finger protein 695 2 2
MIRT684008 FOLR1 folate receptor 1 2 2
MIRT684442 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT684855 ZNF749 zinc finger protein 749 2 2
MIRT684956 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT685044 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685095 DTD2 D-tyrosyl-tRNA deacylase 2 (putative) 2 2
MIRT685382 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT685456 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT685810 SLC27A1 solute carrier family 27 member 1 2 2
MIRT685913 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT686665 TMEM120B transmembrane protein 120B 2 2
MIRT686955 SFT2D2 SFT2 domain containing 2 2 2
MIRT687118 QPCTL glutaminyl-peptide cyclotransferase like 2 2
MIRT687739 KIAA1328 KIAA1328 2 2
MIRT688063 GLUL glutamate-ammonia ligase 2 2
MIRT688191 FNIP1 folliculin interacting protein 1 2 2
MIRT688769 CDH7 cadherin 7 2 2
MIRT688979 ATP6AP1 ATPase H+ transporting accessory protein 1 2 2
MIRT689572 NUDT7 nudix hydrolase 7 2 2
MIRT689683 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT689930 MANSC1 MANSC domain containing 1 2 2
MIRT690089 PNMA2 paraneoplastic Ma antigen 2 2 2
MIRT690190 C5orf45 MRN complex interacting protein 2 2
MIRT690246 CAMLG calcium modulating ligand 2 2
MIRT690411 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT690840 DSN1 DSN1 homolog, MIS12 kinetochore complex component 2 2
MIRT690889 FUT2 fucosyltransferase 2 2 2
MIRT691107 ADIPOQ adiponectin, C1Q and collagen domain containing 2 2
MIRT691229 DFNB59 pejvakin 2 2
MIRT691300 ZNF681 zinc finger protein 681 2 2
MIRT691366 GP5 glycoprotein V platelet 2 2
MIRT691797 WARS tryptophanyl-tRNA synthetase 2 2
MIRT692142 CEP104 centrosomal protein 104 2 2
MIRT692572 NCMAP non-compact myelin associated protein 2 2
MIRT692649 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT692744 NDUFS5 NADH:ubiquinone oxidoreductase subunit S5 2 2
MIRT693092 SCNM1 sodium channel modifier 1 2 2
MIRT693296 SYTL3 synaptotagmin like 3 2 2
MIRT693392 ZNF460 zinc finger protein 460 2 2
MIRT693530 ZNF708 zinc finger protein 708 2 2
MIRT693562 PIGR polymeric immunoglobulin receptor 2 2
MIRT694492 AGBL5 ATP/GTP binding protein like 5 2 2
MIRT694722 LLGL1 LLGL1, scribble cell polarity complex component 2 2
MIRT694866 ZNF417 zinc finger protein 417 2 2
MIRT695070 ZNF17 zinc finger protein 17 2 2
MIRT695451 COX18 COX18, cytochrome c oxidase assembly factor 2 2
MIRT695724 ZNF117 zinc finger protein 117 2 2
MIRT695898 MED16 mediator complex subunit 16 2 2
MIRT696244 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT696259 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT696512 C3 complement C3 2 2
MIRT696560 TTC21B tetratricopeptide repeat domain 21B 2 2
MIRT696643 AGXT2 alanine--glyoxylate aminotransferase 2 2 2
MIRT696791 DHODH dihydroorotate dehydrogenase (quinone) 2 2
MIRT696819 PLLP plasmolipin 2 2
MIRT697088 GPKOW G-patch domain and KOW motifs 2 2
MIRT697153 INMT indolethylamine N-methyltransferase 2 2
MIRT697202 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697322 ZNF641 zinc finger protein 641 2 2
MIRT697578 YME1L1 YME1 like 1 ATPase 2 2
MIRT697619 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT698619 TES testin LIM domain protein 2 2
MIRT698804 STK38 serine/threonine kinase 38 2 2
MIRT698949 SPAST spastin 2 2
MIRT699083 SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 2 2
MIRT699430 SLC1A5 solute carrier family 1 member 5 2 2
MIRT699550 SIT1 signaling threshold regulating transmembrane adaptor 1 2 2
MIRT700324 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT700360 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT700462 PURB purine rich element binding protein B 2 2
MIRT701677 MYADM myeloid associated differentiation marker 2 2
MIRT701757 MSL2 MSL complex subunit 2 2 2
MIRT701977 MIER3 MIER family member 3 2 2
MIRT703178 GPBP1 GC-rich promoter binding protein 1 2 2
MIRT703203 GOLGA3 golgin A3 2 2
MIRT703359 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT703425 FYTTD1 forty-two-three domain containing 1 2 2
MIRT703484 FNDC3B fibronectin type III domain containing 3B 2 2
MIRT703590 FBXO45 F-box protein 45 2 2
MIRT703806 EVI5 ecotropic viral integration site 5 2 2
MIRT703915 EPG5 ectopic P-granules autophagy protein 5 homolog 2 2
MIRT704234 DHDDS dehydrodolichyl diphosphate synthase subunit 2 2
MIRT704646 CLCC1 chloride channel CLIC like 1 2 2
MIRT705151 C11orf58 chromosome 11 open reading frame 58 2 2
MIRT705480 ASXL2 additional sex combs like 2, transcriptional regulator 2 2
MIRT705530 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT705661 ANKRD40 ankyrin repeat domain 40 2 2
MIRT706144 ZNF674 zinc finger protein 674 2 2
MIRT706473 SNX27 sorting nexin family member 27 2 2
MIRT708254 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT708838 SCAND3 zinc finger BED-type containing 9 1 1
MIRT710437 BTNL3 butyrophilin like 3 2 2
MIRT711325 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT716151 RBM48 RNA binding motif protein 48 2 2
MIRT717402 ZCCHC24 zinc finger CCHC-type containing 24 2 2
MIRT720866 ADCY5 adenylate cyclase 5 2 2
MIRT722226 ZNF503 zinc finger protein 503 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-1273h-5p Paclitaxel 36314 NSC125973 approved sensitive High Ovarian Cancer cell line (SKOV3)
hsa-miR-1273h-5p Tripterygium wilfordii Hook F resistant tissue
hsa-miR-1273h-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (MGC-803)

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