miRTarBase - #MIRT464371


—
pre-miRNA Information
pre-miRNA hsa-mir-4747   
Genomic Coordinates chr19: 4932687 - 4932740
Description Homo sapiens miR-4747 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4747-5p
Sequence 1| AGGGAAGGAGGCUUGGUCUUAG |22
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs560927363 4 dbSNP
rs1471226927 10 dbSNP
rs763137545 12 dbSNP
rs767337154 15 dbSNP
rs775298039 16 dbSNP
rs760472311 19 dbSNP
rs1207950315 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol URM1   
Synonyms C9orf74
Description ubiquitin related modifier 1
Transcript NM_001135947   
Other Transcripts NM_030914   
Expression
Putative miRNA Targets on URM1
3'UTR of URM1
(miRNA target sites are highlighted)		 
>URM1|NM_001135947|3'UTR
   1 AGATTTGCAGGTTGAGGTATAGGATACCCATTTTTCTGGTAGAGTCTGTCTCTTCCAGAGCAGCCAGTCCTCAGCCCCTG
  81 TTCTCCCAACTCCTGGGGTGGACCTGGGAAGGTGGCCCTGAGGGTCTCCCGCTCCCCTCTCTCCCGCACCAGGGTGAGCT
 161 GGACTACCAGCTTCAGGACCAGGACAGCGTCCTCTTCATCTCCACTCTGCACGGCGGCTGAGGGCCCTTCTCTGGGCCTG
 241 GGCACCCTTAGAGGGGAGAACGAAGCAATCAGACATCCCCTTGGGCCCTGCTTCCAGGTCTCCCTGTCCCCCTTGCCTGC
 321 CTTCTTCCCTGCTCTGTCCCCTAAGCTCCCTCCAGGCAGGGAAAAGAGGCCAGGTGCTAAAAATGAGCCTTTCTCAAGCA
 401 CGTGAGCAGCGGAAGGCAGACAGGCGCCAGAGCCCAGCACTCCCTTTTCCAGCAGCTGTGGTGGGGGAGGGTTCCCCTCC
 481 AGTTTGTCAAGAGTTGAAGGAGGCTCTGTGGCCAGGTGACCTGGCTGCCTTCCACTCCTTGTACCTCAGTCTAAACATGG
 561 AGTGGCCGCTGACAAGGCGCTCCAGCCCCAGAGCCAGCGTCTTCATGGGGAAGATGAATGGACCTGAGTAGCTGAAGGAA
 641 GGCCCCTCCCTACCCAAAGACTGGAGGCTTCTCAGCCTCAATTTCCCTGTCTGTACAGCTGAGGGCTCTGCCTGTCCCCC
 721 ACTGCTATCAGTATGGAACCCCAGCTGGGGTCCCCTATTGAGTGCCGACTCCCCCCACCGCCAGCAGCTGCTCCTCCAGC
 801 CACACCCCTCCTGCTCCCCCCACCCCTAGCCCTTGACCCTGGCTGGCCTGCCCCGCTCCACAGGCCACCAGATGGGCTCC
 881 TGAGACCCTCCCCAGGCTGCTTACAGCTCATTCTGCTGGGGGTAGAGATGAGGGGAGGGAGTAAGTTAAACCTTGGACTA
 961 GCAAGTAGAAGCCTGGGGGGATGCGTGTGCCTCAGTTTCCTCCTCCACAACTGAATATAGTGGCTGAAAACTGGGGAGAT
1041 ACTTGATGGCGCGAATGTCCGTTTTCTCTCCCTTCCCACCTCCTGCAGGAAGCAGGACGGGGCAGGCAGCACCTGGTAGG
1121 CACAGTGCTTTGCCCCTCCTCCCCTTCCCTTCTGGAAGTCTTGGGGCCTCAGTGCTTGCAACAGCCGGCCTTGGGCAAAT
1201 AAAAGACTAGGTTGTTTACTAGCCTTGCTTGGAGCTTCATCCTTGGAAACGGGTGGCACCTCATATCCCCCCAGCCGTGG
1281 TCTGTGATACAACCTCTCCATCCTCAGCCTAGGGCCTCAGAGCTACCCTTCACCCAAAAGAGGGGTGGGGGTGAACACTC
1361 AGACAATCTGAGAGGGGGTAGTCTAATAGAGCCATCTGGAGAAGGGAGTGGCAGAGCCAGTCTGTGCTGACCAGTCTGTG
1441 TCCCGGGACGCATCCCCACCCGTCTGTCCAAGGCTTTGTCCCACCAGCTGCAGCCAGCAGCCTCAGAACCCAAAATGAGG
1521 GTAGCATAGATAAGACTGCTGAGCCCCCTTTCTGTGGTCTTTCCTTTCCATGACCTAGAGAAAAGAGCTTTGCTGGAGGG
1601 AGACCCCCAAAAAGAATTAGGGTGCTAACATCCCACCAAAAGCATCATCCCACCCAAAATGTTGCTTTTCATTCTATGTC
1681 AATAATTTAAGGTGGAATTTCTCTCACCCTGTGGAGATGAAAGTGGCAAAAGGTTGTCCCAGCAGTGTTGGGGGATGGGG
1761 TGTGCACATCATTCTTTTGGGGGTAGATGACCTGCTGGCTGGTGGGCTTTTCTCCAGGACTACTGCAGGTAGAGACCCTC
1841 TGGGCTTGTGTGGAGTGGGAGCAGCCGTGTTGGGACTATGGGGAGGAGCTGGTCTGGGTGCAAATTAAGGCCAGTGTTGG
1921 GGTCTGAGTGCTGTCCAGAAAGGCTGTGTGACCAACCCTCACTAGTTCCTGAGGTCAGGGTCTCCATGTTAGGGAACAGA
2001 GCAAGAGACTTGGAACAGCTCCCTACAGCTGCACTTCTAGAAGGTCAGCCTGTCCGATTCTTGTAACCTGGAGGTCCCTC
2081 CCCATCTGCAGCCCCCTGAGCTGCAGGAGCGGCCCCATCAGTGCACCTGATTGGAACACACTAGATTTCAGGTCCTGGAA
2161 ACTGGGCGCTAGGATCCGTTTCCCTGGCTGCAGAGAGTGGGAGGTGTGATGTGGAATATCCCTTCTCCCAGCACACCCCA
2241 ATTAATACTGAAGAGTAGGGCAGGAGGAGGTGCTGGGAAAACCGGGTTTCTTGGCACATGGGGGTGCAAGCACTGTGGTT
2321 GAAATTGGCCATGTCCAAGGCACACCAGACGATTTCAGGTCATTTTTAGCCCTAGACTGGAAAGGGGTCAGGGGACAGGT
2401 GACCTGGGCTCAGCCCCCAGCAGCTCCCAACTGCCCCTCTCCCAAGCAACTCCTGATCCCTGCTTTTGAGGAAATAAACA
2481 AATAAAACCCCGCTATCTCCGAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' gauucUGGUUCGGA--GGAAGGGa 5'
               :||   |||  ||||||| 
Target 5' gctttGCCCCTCCTCCCCTTCCCt 3'
 1127 - 1150 147.00 -19.10
2 
miRNA  3' gauuCUGGUUCGGAGGAAGGga 5'
              |||| :||: ||||||  
Target 5' aggtGACCTGGCTGCCTTCCac 3'
 514 - 535 146.00 -20.20
3 
miRNA  3' gauucugguuCGGAGGAAGGGa 5'
                    ||||:|||||| 
Target 5' ccccttgcctGCCTTCTTCCCt 3'
 309 - 330 144.00 -23.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31592236 29 COSMIC
COSN28881228 57 COSMIC
COSN16128667 108 COSMIC
COSN16128480 121 COSMIC
COSN30702656 132 COSMIC
COSN31552436 137 COSMIC
COSM8254442 151 COSMIC
COSM4936038 180 COSMIC
COSM8533847 189 COSMIC
COSM9342110 203 COSMIC
COSM4921095 216 COSMIC
COSN24303216 233 COSMIC
COSN30469206 247 COSMIC
COSN30471702 247 COSMIC
COSN30492753 259 COSMIC
COSN14373717 263 COSMIC
COSN30465570 280 COSMIC
COSN7557265 298 COSMIC
COSN30539677 332 COSMIC
COSN24311744 349 COSMIC
COSN30513730 389 COSMIC
COSN30543541 408 COSMIC
COSN7557266 411 COSMIC
COSN32063473 543 COSMIC
COSN20106645 1019 COSMIC
COSN8520003 1149 COSMIC
COSN26562595 1223 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1171299719 3 dbSNP
rs970062146 6 dbSNP
rs767515211 7 dbSNP
rs750569263 8 dbSNP
rs756256510 12 dbSNP
rs780198034 16 dbSNP
rs1411887987 23 dbSNP
rs78533174 27 dbSNP
rs41313335 38 dbSNP
rs1365979127 42 dbSNP
rs1231042171 43 dbSNP
rs762339326 46 dbSNP
rs1447430328 49 dbSNP
rs906389051 53 dbSNP
rs1194145869 55 dbSNP
rs143774094 71 dbSNP
rs1033616634 73 dbSNP
rs1188760043 76 dbSNP
rs920895329 77 dbSNP
rs1490671842 79 dbSNP
rs536714521 82 dbSNP
rs1165819183 95 dbSNP
rs1344728720 96 dbSNP
rs556671154 100 dbSNP
rs375067234 101 dbSNP
rs1050821088 102 dbSNP
rs372824048 107 dbSNP
rs772613378 109 dbSNP
rs778225263 111 dbSNP
rs539223531 112 dbSNP
rs745452451 117 dbSNP
rs1298488320 124 dbSNP
rs768237190 125 dbSNP
rs769337598 129 dbSNP
rs201991488 131 dbSNP
rs768154723 132 dbSNP
rs200421694 133 dbSNP
rs774219751 134 dbSNP
rs1372127877 135 dbSNP
rs767627771 138 dbSNP
rs750370980 142 dbSNP
rs1168107640 144 dbSNP
rs760631983 146 dbSNP
rs370747877 147 dbSNP
rs753817796 150 dbSNP
rs375604007 154 dbSNP
rs1251790061 155 dbSNP
rs1037252644 157 dbSNP
rs1180589664 159 dbSNP
rs1384893970 160 dbSNP
rs898347641 161 dbSNP
rs778977986 162 dbSNP
rs1331623594 165 dbSNP
rs753097631 166 dbSNP
rs1347081220 168 dbSNP
rs1200774973 174 dbSNP
rs922753956 179 dbSNP
rs932863980 188 dbSNP
rs1343639496 189 dbSNP
rs150966477 190 dbSNP
rs1482160463 191 dbSNP
rs749134712 193 dbSNP
rs1252607116 196 dbSNP
rs757642428 199 dbSNP
rs368570056 207 dbSNP
rs1407881001 209 dbSNP
rs370348671 210 dbSNP
rs1269900772 212 dbSNP
rs1379838312 212 dbSNP
rs748698395 213 dbSNP
rs768405680 214 dbSNP
rs374697837 216 dbSNP
rs748012287 217 dbSNP
rs772006352 223 dbSNP
rs140821387 224 dbSNP
rs1368121770 227 dbSNP
rs1478654731 230 dbSNP
rs773737651 231 dbSNP
rs773074614 234 dbSNP
rs760688992 236 dbSNP
rs1434332588 237 dbSNP
rs368000179 240 dbSNP
rs776817804 242 dbSNP
rs759500572 243 dbSNP
rs765565694 244 dbSNP
rs752905550 246 dbSNP
rs1427411205 248 dbSNP
rs1010345098 250 dbSNP
rs758561778 254 dbSNP
rs764451819 255 dbSNP
rs1335888241 257 dbSNP
rs751882648 262 dbSNP
rs1246761256 263 dbSNP
rs372210741 269 dbSNP
rs1189313018 274 dbSNP
rs373253256 275 dbSNP
rs1461404525 277 dbSNP
rs574075510 280 dbSNP
rs1438103068 288 dbSNP
rs1266868590 290 dbSNP
rs1226022410 291 dbSNP
rs1033978449 292 dbSNP
rs543148115 293 dbSNP
rs563036884 295 dbSNP
rs1161286599 296 dbSNP
rs1338979363 297 dbSNP
rs774510032 301 dbSNP
rs1453565522 303 dbSNP
rs974927091 311 dbSNP
rs748398460 312 dbSNP
rs114245612 319 dbSNP
rs1409405275 321 dbSNP
rs1368023436 328 dbSNP
rs1384673443 330 dbSNP
rs955017380 332 dbSNP
rs41276664 335 dbSNP
rs866165607 338 dbSNP
rs376181985 339 dbSNP
rs1350831675 342 dbSNP
rs939740048 344 dbSNP
rs1444808327 351 dbSNP
rs1275827326 356 dbSNP
rs1312149441 362 dbSNP
rs966704562 364 dbSNP
rs1245403291 365 dbSNP
rs972488657 366 dbSNP
rs773271761 370 dbSNP
rs1456702740 373 dbSNP
rs761148696 384 dbSNP
rs1209122552 388 dbSNP
rs976791341 389 dbSNP
rs1316821141 395 dbSNP
rs919726838 402 dbSNP
rs1178321623 403 dbSNP
rs931140340 409 dbSNP
rs1029714669 411 dbSNP
rs766601555 412 dbSNP
rs985649114 416 dbSNP
rs1323520871 417 dbSNP
rs559396719 426 dbSNP
rs962990930 427 dbSNP
rs1389216778 430 dbSNP
rs1186223290 433 dbSNP
rs777224994 444 dbSNP
rs140759094 456 dbSNP
rs1242119089 457 dbSNP
rs1198093396 464 dbSNP
rs547494584 466 dbSNP
rs1293852608 470 dbSNP
rs1223001934 471 dbSNP
rs1341170664 472 dbSNP
rs948101545 473 dbSNP
rs928970464 479 dbSNP
rs1362757385 489 dbSNP
rs1010708976 490 dbSNP
rs1046158456 502 dbSNP
rs1177030440 507 dbSNP
rs1021666796 521 dbSNP
rs1408085401 525 dbSNP
rs1409621371 531 dbSNP
rs1463850937 540 dbSNP
rs1369054007 548 dbSNP
rs768110617 561 dbSNP
rs369312970 563 dbSNP
rs927740464 565 dbSNP
rs937811045 568 dbSNP
rs904654606 569 dbSNP
rs1272606536 573 dbSNP
rs1476738108 578 dbSNP
rs996292400 579 dbSNP
rs1200001168 580 dbSNP
rs1482626085 582 dbSNP
rs1029144803 583 dbSNP
rs955108822 593 dbSNP
rs1224719592 594 dbSNP
rs1308364907 595 dbSNP
rs1010804190 599 dbSNP
rs1265528762 608 dbSNP
rs1325695151 611 dbSNP
rs1316516729 623 dbSNP
rs987758187 624 dbSNP
rs1409680588 628 dbSNP
rs1198417008 639 dbSNP
rs902494532 642 dbSNP
rs1439797953 643 dbSNP
rs1443380544 666 dbSNP
rs1196974545 679 dbSNP
rs1019666622 686 dbSNP
rs150093187 687 dbSNP
rs1029663886 688 dbSNP
rs1467796568 699 dbSNP
rs1480790033 700 dbSNP
rs1200127213 702 dbSNP
rs1177078154 717 dbSNP
rs1472192532 720 dbSNP
rs972439753 721 dbSNP
rs372900918 728 dbSNP
rs763607380 730 dbSNP
rs868185071 732 dbSNP
rs1007425054 748 dbSNP
rs1237137038 753 dbSNP
rs1431344267 755 dbSNP
rs1017083332 758 dbSNP
rs530099424 767 dbSNP
rs550336370 768 dbSNP
rs1046557713 771 dbSNP
rs979920463 777 dbSNP
rs927943489 778 dbSNP
rs375868791 780 dbSNP
rs1411347516 781 dbSNP
rs1283270121 787 dbSNP
rs1321155713 795 dbSNP
rs539235826 798 dbSNP
rs972949387 799 dbSNP
rs1407680030 800 dbSNP
rs570719469 806 dbSNP
rs918858807 807 dbSNP
rs114639179 817 dbSNP
rs1405025016 820 dbSNP
rs1057062096 822 dbSNP
rs1412714790 823 dbSNP
rs1181991215 825 dbSNP
rs913183917 826 dbSNP
rs946065502 829 dbSNP
rs1243971577 830 dbSNP
rs927656264 831 dbSNP
rs1463582993 832 dbSNP
rs1217082925 837 dbSNP
rs937774655 837 dbSNP
rs751127951 839 dbSNP
rs1310958573 840 dbSNP
rs1248612235 848 dbSNP
rs2240945 854 dbSNP
rs915068631 855 dbSNP
rs371423026 856 dbSNP
rs1208336588 862 dbSNP
rs1289409120 873 dbSNP
rs1042263248 875 dbSNP
rs1490552094 877 dbSNP
rs1224818673 885 dbSNP
rs1349214492 886 dbSNP
rs902442420 889 dbSNP
rs996238190 896 dbSNP
rs1261045043 897 dbSNP
rs554949609 899 dbSNP
rs1386148108 909 dbSNP
rs1476820104 922 dbSNP
rs998108151 923 dbSNP
rs780030329 925 dbSNP
rs1187631062 928 dbSNP
rs1488475114 932 dbSNP
rs1051099870 933 dbSNP
rs890640426 936 dbSNP
rs1476265238 942 dbSNP
rs1227124850 943 dbSNP
rs1009528051 957 dbSNP
rs1006961815 962 dbSNP
rs1382292473 965 dbSNP
rs1017446535 973 dbSNP
rs1384231036 978 dbSNP
rs1301192902 980 dbSNP
rs1424840504 981 dbSNP
rs1168205649 984 dbSNP
rs962885851 984 dbSNP
rs574137546 985 dbSNP
rs141115931 986 dbSNP
rs962649552 988 dbSNP
rs1267445103 991 dbSNP
rs1202170141 993 dbSNP
rs754026881 996 dbSNP
rs1251469784 1007 dbSNP
rs1194421608 1013 dbSNP
rs993827512 1014 dbSNP
rs1243059552 1015 dbSNP
rs201525896 1015 dbSNP
rs200432145 1016 dbSNP
rs3217091 1016 dbSNP
rs199707278 1018 dbSNP
rs1360450594 1021 dbSNP
rs1311052769 1032 dbSNP
rs556641571 1035 dbSNP
rs1281336471 1038 dbSNP
rs1026682019 1043 dbSNP
rs1225197502 1043 dbSNP
rs1345928495 1044 dbSNP
rs1034675808 1051 dbSNP
rs1389460270 1052 dbSNP
rs1248401502 1053 dbSNP
rs576489571 1054 dbSNP
rs952422073 1058 dbSNP
rs750022870 1061 dbSNP
rs147022760 1062 dbSNP
rs779676534 1069 dbSNP
rs959908622 1074 dbSNP
rs1439896708 1077 dbSNP
rs1252258062 1078 dbSNP
rs1195980832 1085 dbSNP
rs753276978 1088 dbSNP
rs993109268 1098 dbSNP
rs913140019 1099 dbSNP
rs879231322 1100 dbSNP
rs1236681430 1102 dbSNP
rs1185161933 1104 dbSNP
rs749257705 1114 dbSNP
rs1395608170 1128 dbSNP
rs1404162112 1135 dbSNP
rs559469457 1139 dbSNP
rs754908990 1140 dbSNP
rs933891076 1149 dbSNP
rs572929921 1151 dbSNP
rs1048340 1153 dbSNP
rs1388610585 1154 dbSNP
rs1157290338 1155 dbSNP
rs1471379232 1159 dbSNP
rs1048354 1161 dbSNP
rs1043019971 1162 dbSNP
rs1182099022 1167 dbSNP
rs1051482039 1174 dbSNP
rs1240882910 1178 dbSNP
rs542139776 1179 dbSNP
rs1205063811 1182 dbSNP
rs561952372 1187 dbSNP
rs185888387 1188 dbSNP
rs1038415436 1203 dbSNP
rs1452413224 1205 dbSNP
rs35885713 1208 dbSNP
rs1050539275 1210 dbSNP
rs890578341 1218 dbSNP
rs1159716707 1230 dbSNP
rs1261149797 1236 dbSNP
rs746774559 1237 dbSNP
rs1380904702 1238 dbSNP
rs1394739364 1240 dbSNP
rs1453499750 1243 dbSNP
rs994285528 1251 dbSNP
rs772253835 1256 dbSNP
rs1025818189 1260 dbSNP
rs907395668 1261 dbSNP
rs898065533 1269 dbSNP
rs1386299679 1270 dbSNP
rs1003115895 1272 dbSNP
rs1423122537 1273 dbSNP
rs550150553 1275 dbSNP
rs1184985958 1276 dbSNP
rs1444716541 1277 dbSNP
rs773503308 1278 dbSNP
rs1307336261 1285 dbSNP
rs1026628212 1288 dbSNP
rs952372120 1294 dbSNP
rs1190374029 1300 dbSNP
rs758639973 1303 dbSNP
rs555753579 1307 dbSNP
rs1221545179 1314 dbSNP
rs771329624 1323 dbSNP
rs1262510501 1328 dbSNP
rs1294223531 1336 dbSNP
rs1352777806 1336 dbSNP
rs1198619492 1338 dbSNP
rs1338849865 1343 dbSNP
rs776802294 1355 dbSNP
rs1262318942 1360 dbSNP
rs1432936021 1360 dbSNP
rs960092965 1361 dbSNP
rs1303058496 1363 dbSNP
rs1403501895 1365 dbSNP
rs868527368 1367 dbSNP
rs977835055 1372 dbSNP
rs913079133 1373 dbSNP
rs1235970313 1374 dbSNP
rs1418316487 1375 dbSNP
rs1165721845 1377 dbSNP
rs377012109 1378 dbSNP
rs986710956 1386 dbSNP
rs565067958 1389 dbSNP
rs1198519053 1395 dbSNP
rs978660513 1409 dbSNP
rs1489807539 1411 dbSNP
rs1364974157 1417 dbSNP
rs911131261 1443 dbSNP
rs925918899 1445 dbSNP
rs532612779 1446 dbSNP
rs931985282 1450 dbSNP
rs986577971 1451 dbSNP
rs1283205027 1453 dbSNP
rs138184459 1462 dbSNP
rs930029178 1463 dbSNP
rs370371883 1467 dbSNP
rs1353622355 1468 dbSNP
rs1326381671 1485 dbSNP
rs1372890247 1487 dbSNP
rs1411162181 1496 dbSNP
rs1423673778 1502 dbSNP
rs143664445 1521 dbSNP
rs1431309886 1527 dbSNP
rs190168332 1533 dbSNP
rs145917322 1540 dbSNP
rs1231407277 1546 dbSNP
rs930853754 1562 dbSNP
rs1034569862 1563 dbSNP
rs368192853 1574 dbSNP
rs761363025 1579 dbSNP
rs1326366480 1581 dbSNP
rs1284471618 1588 dbSNP
rs1420967727 1589 dbSNP
rs1001192432 1598 dbSNP
rs570467171 1601 dbSNP
rs895548756 1611 dbSNP
rs1255850985 1612 dbSNP
rs967716083 1620 dbSNP
rs1443863470 1622 dbSNP
rs1195978313 1630 dbSNP
rs1272286534 1643 dbSNP
rs1252112137 1644 dbSNP
rs1430939833 1660 dbSNP
rs1014438364 1662 dbSNP
rs182426410 1663 dbSNP
rs967190386 1673 dbSNP
rs1399897832 1675 dbSNP
rs978608305 1677 dbSNP
rs1481672413 1683 dbSNP
rs1470660589 1695 dbSNP
rs1242760069 1697 dbSNP
rs1181889372 1702 dbSNP
rs1169015011 1709 dbSNP
rs148331426 1712 dbSNP
rs1264312195 1719 dbSNP
rs1315531409 1720 dbSNP
rs1286842495 1724 dbSNP
rs570233262 1728 dbSNP
rs141444537 1729 dbSNP
rs1462721951 1747 dbSNP
rs953331289 1752 dbSNP
rs374155409 1754 dbSNP
rs1449848103 1761 dbSNP
rs986137434 1763 dbSNP
rs911906603 1767 dbSNP
rs750123992 1768 dbSNP
rs755659465 1771 dbSNP
rs1303386267 1773 dbSNP
rs944787870 1775 dbSNP
rs546948330 1780 dbSNP
rs972571495 1782 dbSNP
rs1404406687 1792 dbSNP
rs1452901665 1794 dbSNP
rs919391417 1798 dbSNP
rs1343335618 1801 dbSNP
rs2240944 1815 dbSNP
rs1346082034 1816 dbSNP
rs150827739 1819 dbSNP
rs905430986 1821 dbSNP
rs938286555 1830 dbSNP
rs1256895289 1835 dbSNP
rs919914540 1836 dbSNP
rs1306685536 1857 dbSNP
rs1055440269 1860 dbSNP
rs1244331483 1861 dbSNP
rs75629323 1867 dbSNP
rs1359096045 1868 dbSNP
rs1047156882 1870 dbSNP
rs1290580881 1881 dbSNP
rs1243268370 1883 dbSNP
rs928708535 1886 dbSNP
rs1360998084 1888 dbSNP
rs1013968649 1892 dbSNP
rs1312865032 1898 dbSNP
rs1359858221 1899 dbSNP
rs1290502229 1905 dbSNP
rs1400392135 1914 dbSNP
rs1364691574 1915 dbSNP
rs1252700684 1922 dbSNP
rs938830218 1923 dbSNP
rs1426846088 1924 dbSNP
rs113086733 1939 dbSNP
rs1169912459 1947 dbSNP
rs762578971 1956 dbSNP
rs1426797925 1958 dbSNP
rs894682291 1959 dbSNP
rs1221111744 1981 dbSNP
rs1490296976 1985 dbSNP
rs1267146620 1987 dbSNP
rs1225153048 1993 dbSNP
rs1019992584 1997 dbSNP
rs902978323 2002 dbSNP
rs1226078889 2008 dbSNP
rs1305193768 2010 dbSNP
rs1268919334 2018 dbSNP
rs999147978 2021 dbSNP
rs866180391 2024 dbSNP
rs999979341 2040 dbSNP
rs955290719 2049 dbSNP
rs1301106769 2054 dbSNP
rs1406536998 2055 dbSNP
rs1032837513 2056 dbSNP
rs953280882 2057 dbSNP
rs1297763767 2064 dbSNP
rs1460531997 2092 dbSNP
rs1356311476 2093 dbSNP
rs116967727 2095 dbSNP
rs1427773465 2097 dbSNP
rs774190847 2097 dbSNP
rs1434070421 2103 dbSNP
rs201130942 2108 dbSNP
rs1194839221 2111 dbSNP
rs151141817 2111 dbSNP
rs187942668 2120 dbSNP
rs192221871 2124 dbSNP
rs2240943 2126 dbSNP
rs532388503 2136 dbSNP
rs966449033 2145 dbSNP
rs1198690345 2163 dbSNP
rs1322820332 2166 dbSNP
rs10124503 2168 dbSNP
rs1225130058 2172 dbSNP
rs559591272 2173 dbSNP
rs116246421 2174 dbSNP
rs928654563 2176 dbSNP
rs1367482997 2177 dbSNP
rs548335525 2178 dbSNP
rs1469346491 2179 dbSNP
rs184074843 2185 dbSNP
rs926796479 2187 dbSNP
rs1363535614 2189 dbSNP
rs371545217 2190 dbSNP
rs538789986 2197 dbSNP
rs1180081623 2199 dbSNP
rs1361099051 2200 dbSNP
rs1178775186 2209 dbSNP
rs1214951039 2210 dbSNP
rs531082096 2221 dbSNP
rs1057123183 2235 dbSNP
rs34688153 2236 dbSNP
rs1261181225 2242 dbSNP
rs1345477273 2247 dbSNP
rs537956542 2247 dbSNP
rs1356853084 2262 dbSNP
rs1244739459 2267 dbSNP
rs1236570780 2274 dbSNP
rs1379476144 2278 dbSNP
rs916880957 2281 dbSNP
rs747267090 2284 dbSNP
rs546978601 2287 dbSNP
rs1055912152 2295 dbSNP
rs1291921837 2295 dbSNP
rs1339299025 2302 dbSNP
rs1360950349 2307 dbSNP
rs949747241 2316 dbSNP
rs1214349803 2318 dbSNP
rs1242040313 2326 dbSNP
rs1157261788 2328 dbSNP
rs1455661447 2332 dbSNP
rs1486441357 2341 dbSNP
rs916035999 2345 dbSNP
rs1158804157 2351 dbSNP
rs1188668075 2363 dbSNP
rs947597657 2364 dbSNP
rs771116198 2374 dbSNP
rs550839131 2378 dbSNP
rs1203181993 2384 dbSNP
rs1444267434 2390 dbSNP
rs999927007 2390 dbSNP
rs1164413931 2407 dbSNP
rs761093937 2414 dbSNP
rs766426224 2418 dbSNP
rs1043248766 2427 dbSNP
rs570854585 2428 dbSNP
rs999095545 2438 dbSNP
rs1158398939 2448 dbSNP
rs539051351 2451 dbSNP
rs1326418244 2459 dbSNP
rs1344553050 2460 dbSNP
rs1316782748 2461 dbSNP
rs1384277974 2476 dbSNP
rs1052046055 2480 dbSNP
rs1431326755 2480 dbSNP
rs1423657077 2489 dbSNP
rs755153726 2490 dbSNP
rs138173359 2493 dbSNP
rs1290445356 2501 dbSNP
rs888962138 2503 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' gauucUGGUUCGGA--GGAAGGGa 5'
               :||   |||  ||||||| 
Target 5' -cuuuGCCCCUCCUCCCCUUCCCu 3'
 		1 - 23
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_030914 | 3UTR | UUUGCCCCUCCUCCCCUUCCCUUCUGGAAGUCUUGGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_030914 | 3UTR | ACAGUGCUUUGCCCCUCCUCCCCUUCCCUUCUGGAAGUCUUGGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_030914 | 3UTR | CUGGUAGGCACAGUGCUUUGCCCCUCCUCCCCUUCCCUUCUGGAAGUCUUGGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_030914 | 3UTR | CACAGUGCUUUGCCCCUCCUCCCCUUCCCUUCUGGAAGUCUUGGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_030914 | 3UTR | CCUGGUAGGCACAGUGCUUUGCCCCUCCUCCCCUUCCCUUCUGGAAGUCUUGGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_030914 | 3UTR | UCCCUUCCCACCUCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000372850.1 | 3UTR | CUUUGCCCCUCCUCCCCUUCCCUUCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
215 hsa-miR-4747-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT061689 BTG2 BTG anti-proliferation factor 2 2 2
MIRT062834 BCL7A BCL tumor suppressor 7A 2 2
MIRT079371 CCDC137 coiled-coil domain containing 137 2 2
MIRT081190 MIDN midnolin 2 4
MIRT081724 ZNF507 zinc finger protein 507 2 2
MIRT110565 ZMYND11 zinc finger MYND-type containing 11 2 2
MIRT133724 SKI SKI proto-oncogene 2 4
MIRT146689 MINK1 misshapen like kinase 1 2 2
MIRT150676 SLC27A1 solute carrier family 27 member 1 2 2
MIRT159196 NRBP1 nuclear receptor binding protein 1 2 2
MIRT180865 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT190659 PABPN1 poly(A) binding protein nuclear 1 2 2
MIRT196111 MPRIP myosin phosphatase Rho interacting protein 2 2
MIRT232390 SP1 Sp1 transcription factor 2 2
MIRT331070 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 4
MIRT338632 SHMT2 serine hydroxymethyltransferase 2 2 2
MIRT407441 CTDSP1 CTD small phosphatase 1 2 2
MIRT444276 NKX6-1 NK6 homeobox 1 2 2
MIRT444834 PDE6D phosphodiesterase 6D 2 2
MIRT445452 EXT1 exostosin glycosyltransferase 1 2 2
MIRT445644 NPY4R neuropeptide Y receptor Y4 2 2
MIRT446157 RPL12 ribosomal protein L12 2 2
MIRT446608 HIP1 huntingtin interacting protein 1 2 2
MIRT447108 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT449314 MRO maestro 2 2
MIRT450305 DRAXIN dorsal inhibitory axon guidance protein 2 2
MIRT451245 ZNF444 zinc finger protein 444 2 2
MIRT451714 OLR1 oxidized low density lipoprotein receptor 1 2 2
MIRT451908 ILK integrin linked kinase 2 2
MIRT452183 KIAA1456 KIAA1456 2 2
MIRT452610 REPIN1 replication initiator 1 2 2
MIRT453422 GLG1 golgi glycoprotein 1 2 2
MIRT454006 ALKBH5 alkB homolog 5, RNA demethylase 2 2
MIRT455072 ARHGAP39 Rho GTPase activating protein 39 2 2
MIRT455319 TTLL9 tubulin tyrosine ligase like 9 2 2
MIRT455357 KDM5C lysine demethylase 5C 2 2
MIRT455589 TAF12 TATA-box binding protein associated factor 12 2 2
MIRT455711 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT455860 TMEM254 transmembrane protein 254 2 2
MIRT455919 RAPGEF1 Rap guanine nucleotide exchange factor 1 2 2
MIRT455946 CYP4A22 cytochrome P450 family 4 subfamily A member 22 2 2
MIRT456935 LRP10 LDL receptor related protein 10 2 2
MIRT457223 AP3D1 adaptor related protein complex 3 delta 1 subunit 2 2
MIRT457431 NOL10 nucleolar protein 10 2 2
MIRT457470 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457907 ZNF212 zinc finger protein 212 2 2
MIRT458046 TSEN54 tRNA splicing endonuclease subunit 54 2 2
MIRT458073 RNLS renalase, FAD dependent amine oxidase 2 2
MIRT458234 NXPH3 neurexophilin 3 2 2
MIRT458307 TNFAIP8L3 TNF alpha induced protein 8 like 3 2 2
MIRT458378 ITM2C integral membrane protein 2C 2 2
MIRT458967 ZNF436 zinc finger protein 436 2 2
MIRT459099 CYP4A11 cytochrome P450 family 4 subfamily A member 11 2 2
MIRT459446 TMEM37 transmembrane protein 37 2 2
MIRT459671 VPS37C VPS37C, ESCRT-I subunit 2 2
MIRT460727 ASXL3 additional sex combs like 3, transcriptional regulator 2 2
MIRT460744 SRP14 signal recognition particle 14 2 2
MIRT461531 C14orf1 ergosterol biosynthesis 28 homolog 2 2
MIRT461752 DDX11 DEAD/H-box helicase 11 2 2
MIRT461837 F2RL3 F2R like thrombin or trypsin receptor 3 2 2
MIRT462019 RIF1 replication timing regulatory factor 1 2 2
MIRT462631 PHF5A PHD finger protein 5A 2 2
MIRT462772 ZNF8 zinc finger protein 8 2 2
MIRT463032 ZNF689 zinc finger protein 689 2 2
MIRT463886 WNT7B Wnt family member 7B 2 2
MIRT463995 WDTC1 WD and tetratricopeptide repeats 1 2 2
MIRT464371 URM1 ubiquitin related modifier 1 2 2
MIRT465342 TPM3 tropomyosin 3 2 4
MIRT465515 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT465602 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT465697 TNPO2 transportin 2 2 10
MIRT466988 SSRP1 structure specific recognition protein 1 2 4
MIRT467630 SLC7A5 solute carrier family 7 member 5 2 2
MIRT468132 SH3PXD2A SH3 and PX domains 2A 2 2
MIRT468322 SF3B3 splicing factor 3b subunit 3 2 2
MIRT468502 SESN2 sestrin 2 2 2
MIRT468881 RREB1 ras responsive element binding protein 1 2 2
MIRT469322 RGP1 RGP1 homolog, RAB6A GEF complex partner 1 2 2
MIRT469562 RARA retinoic acid receptor alpha 2 2
MIRT469898 PTRF caveolae associated protein 1 2 2
MIRT470045 PTGFRN prostaglandin F2 receptor inhibitor 2 2
MIRT470068 PTGES2 prostaglandin E synthase 2 2 2
MIRT470238 PRRC2A proline rich coiled-coil 2A 2 2
MIRT470390 PPP1R16B protein phosphatase 1 regulatory subunit 16B 2 2
MIRT470500 PPP1R11 protein phosphatase 1 regulatory inhibitor subunit 11 2 2
MIRT470689 POLR2D RNA polymerase II subunit D 2 2
MIRT470704 POGK pogo transposable element derived with KRAB domain 2 2
MIRT471083 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT472482 NACC2 NACC family member 2 2 2
MIRT473583 MAT2A methionine adenosyltransferase 2A 2 2
MIRT474554 KLHDC3 kelch domain containing 3 2 2
MIRT474651 KLF13 Kruppel like factor 13 2 2
MIRT474843 KHSRP KH-type splicing regulatory protein 2 2
MIRT474934 KCTD15 potassium channel tetramerization domain containing 15 2 2
MIRT475573 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 2 2
MIRT476045 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT476080 GRB2 growth factor receptor bound protein 2 2 2
MIRT476440 GBA2 glucosylceramidase beta 2 2 2
MIRT476764 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT478785 CRTC2 CREB regulated transcription coactivator 2 2 2
MIRT479287 CHAC1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 2 2
MIRT479505 CDH6 cadherin 6 2 2
MIRT479732 CCND1 cyclin D1 2 6
MIRT480352 C5orf24 chromosome 5 open reading frame 24 2 2
MIRT480407 C19orf47 chromosome 19 open reading frame 47 2 2
MIRT480859 BHLHB9 basic helix-loop-helix family member b9 2 2
MIRT481445 ARRB2 arrestin beta 2 2 2
MIRT481732 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT481824 AP2M1 adaptor related protein complex 2 mu 1 subunit 2 2
MIRT482566 ABHD2 abhydrolase domain containing 2 2 2
MIRT482607 ABHD14B abhydrolase domain containing 14B 2 2
MIRT483144 SYCE1L synaptonemal complex central element protein 1 like 2 2
MIRT483214 APOA1 apolipoprotein A1 2 6
MIRT483878 TGIF1 TGFB induced factor homeobox 1 2 2
MIRT483917 SPSB1 splA/ryanodine receptor domain and SOCS box containing 1 2 2
MIRT483939 LENG8 leukocyte receptor cluster member 8 2 4
MIRT484420 SNX19 sorting nexin 19 2 2
MIRT484489 SLC9A1 solute carrier family 9 member A1 2 2
MIRT484612 SIX3 SIX homeobox 3 2 6
MIRT484705 RNF11 ring finger protein 11 2 2
MIRT485107 SHISA6 shisa family member 6 2 2
MIRT485354 MYO1C myosin IC 2 4
MIRT485609 FOSL1 FOS like 1, AP-1 transcription factor subunit 2 4
MIRT487311 GLTSCR1 BRD4 interacting chromatin remodeling complex associated protein 2 2
MIRT487417 CACNB1 calcium voltage-gated channel auxiliary subunit beta 1 2 2
MIRT487695 CDK14 cyclin dependent kinase 14 2 2
MIRT487791 GPR20 G protein-coupled receptor 20 2 4
MIRT488042 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT488058 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT488237 DNLZ DNL-type zinc finger 2 4
MIRT488764 FXYD1 FXYD domain containing ion transport regulator 1 2 2
MIRT489401 TUBB2A tubulin beta 2A class IIa 2 2
MIRT489777 GRINA glutamate ionotropic receptor NMDA type subunit associated protein 1 2 2
MIRT490099 FN3K fructosamine 3 kinase 2 2
MIRT490290 ISL2 ISL LIM homeobox 2 2 2
MIRT490378 LHFPL3 LHFPL tetraspan subfamily member 3 2 2
MIRT491329 GFER growth factor, augmenter of liver regeneration 2 2
MIRT491435 MSX2 msh homeobox 2 2 2
MIRT491769 ZNF385A zinc finger protein 385A 2 2
MIRT491922 WNK2 WNK lysine deficient protein kinase 2 2 2
MIRT491983 UNK unkempt family zinc finger 2 2
MIRT492228 SLC48A1 solute carrier family 48 member 1 2 2
MIRT492404 SDK1 sidekick cell adhesion molecule 1 2 2
MIRT492767 PDGFB platelet derived growth factor subunit B 2 2
MIRT492966 NCS1 neuronal calcium sensor 1 2 2
MIRT493295 LLGL2 LLGL2, scribble cell polarity complex component 2 2
MIRT493650 HDLBP high density lipoprotein binding protein 2 2
MIRT493913 FAM127B retrotransposon Gag like 8A 2 4
MIRT495601 NKX2-5 NK2 homeobox 5 2 2
MIRT496875 AHCYL2 adenosylhomocysteinase like 2 2 2
MIRT498514 MYH14 myosin heavy chain 14 2 2
MIRT499178 RBPJL recombination signal binding protein for immunoglobulin kappa J region like 2 2
MIRT502143 KIF5B kinesin family member 5B 2 8
MIRT502692 CSNK1G1 casein kinase 1 gamma 1 2 4
MIRT508460 HOXB6 homeobox B6 2 4
MIRT510430 ZNF207 zinc finger protein 207 2 6
MIRT511837 GPATCH8 G-patch domain containing 8 2 4
MIRT512368 CPM carboxypeptidase M 2 2
MIRT512506 BTBD19 BTB domain containing 19 2 2
MIRT513065 ANKRD45 ankyrin repeat domain 45 2 2
MIRT513267 SCUBE1 signal peptide, CUB domain and EGF like domain containing 1 2 4
MIRT513575 EVX1 even-skipped homeobox 1 2 2
MIRT515051 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT515790 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT521657 PRKD3 protein kinase D3 2 2
MIRT522679 LUZP1 leucine zipper protein 1 2 6
MIRT528845 RAB32 RAB32, member RAS oncogene family 2 2
MIRT533569 TOR1AIP1 torsin 1A interacting protein 1 2 2
MIRT543738 DHCR7 7-dehydrocholesterol reductase 2 2
MIRT544295 TSPYL1 TSPY like 1 2 2
MIRT544857 MYH2 myosin heavy chain 2 2 4
MIRT557323 HIATL1 major facilitator superfamily domain containing 14B 2 4
MIRT560522 TMEM98 transmembrane protein 98 2 2
MIRT561565 SLC6A9 solute carrier family 6 member 9 2 2
MIRT562374 ERI2 ERI1 exoribonuclease family member 2 2 2
MIRT565780 SEMA6D semaphorin 6D 2 2
MIRT569548 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT569944 PRRT2 proline rich transmembrane protein 2 2 2
MIRT570016 COL1A2 collagen type I alpha 2 chain 2 2
MIRT572163 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT572322 HSPB6 heat shock protein family B (small) member 6 2 2
MIRT573495 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT574139 MARVELD1 MARVEL domain containing 1 2 2
MIRT609449 CCDC149 coiled-coil domain containing 149 2 2
MIRT610619 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT623355 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT629854 ACOX1 acyl-CoA oxidase 1 2 2
MIRT630516 CDC73 cell division cycle 73 2 2
MIRT632535 PSMB2 proteasome subunit beta 2 2 2
MIRT633975 SLC35E2 solute carrier family 35 member E2 2 2
MIRT636408 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT641722 LTBR lymphotoxin beta receptor 2 2
MIRT642661 RGS6 regulator of G protein signaling 6 2 2
MIRT649649 MAST3 microtubule associated serine/threonine kinase 3 2 2
MIRT650367 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT651355 ZBTB40 zinc finger and BTB domain containing 40 2 2
MIRT664840 HUS1 HUS1 checkpoint clamp component 2 2
MIRT667322 MYH9 myosin heavy chain 9 2 2
MIRT670680 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT674922 TRPM6 transient receptor potential cation channel subfamily M member 6 2 2
MIRT675919 CYP51A1 cytochrome P450 family 51 subfamily A member 1 2 2
MIRT676493 GJD3 gap junction protein delta 3 2 2
MIRT680162 ZDHHC20 zinc finger DHHC-type containing 20 2 2
MIRT688008 GSN gelsolin 2 2
MIRT688997 ATP6AP1 ATPase H+ transporting accessory protein 1 2 2
MIRT700337 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT701344 NR4A3 nuclear receptor subfamily 4 group A member 3 2 2
MIRT703519 FKBP15 FK506 binding protein 15 2 2
MIRT703901 EPT1 selenoprotein I 2 2
MIRT705565 ARHGEF18 Rho/Rac guanine nucleotide exchange factor 18 2 2
MIRT709709 DNAJC11 DnaJ heat shock protein family (Hsp40) member C11 2 2
MIRT713108 TMBIM4 transmembrane BAX inhibitor motif containing 4 2 2
MIRT718426 ZNF85 zinc finger protein 85 2 2
MIRT719236 CYSLTR2 cysteinyl leukotriene receptor 2 2 2
MIRT719326 STAC SH3 and cysteine rich domain 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4747 Paclitaxel 36314 NSC125973 approved resistant cell line (A2780)
hsa-miR-4747-5p Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-4747-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4747-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

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