miRTarBase - #MIRT464405


—
pre-miRNA Information
pre-miRNA hsa-mir-4419b   
Genomic Coordinates chr12: 128244506 - 128244573
Description Homo sapiens miR-4419b stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4419b
Sequence 42| GAGGCUGAAGGAAGAUGG |59
Evidence Experimental
Experiments Illumina
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol URM1   
Synonyms C9orf74
Description ubiquitin related modifier 1
Transcript NM_001135947   
Other Transcripts NM_030914   
Expression
Putative miRNA Targets on URM1
3'UTR of URM1
(miRNA target sites are highlighted)		 
>URM1|NM_001135947|3'UTR
   1 AGATTTGCAGGTTGAGGTATAGGATACCCATTTTTCTGGTAGAGTCTGTCTCTTCCAGAGCAGCCAGTCCTCAGCCCCTG
  81 TTCTCCCAACTCCTGGGGTGGACCTGGGAAGGTGGCCCTGAGGGTCTCCCGCTCCCCTCTCTCCCGCACCAGGGTGAGCT
 161 GGACTACCAGCTTCAGGACCAGGACAGCGTCCTCTTCATCTCCACTCTGCACGGCGGCTGAGGGCCCTTCTCTGGGCCTG
 241 GGCACCCTTAGAGGGGAGAACGAAGCAATCAGACATCCCCTTGGGCCCTGCTTCCAGGTCTCCCTGTCCCCCTTGCCTGC
 321 CTTCTTCCCTGCTCTGTCCCCTAAGCTCCCTCCAGGCAGGGAAAAGAGGCCAGGTGCTAAAAATGAGCCTTTCTCAAGCA
 401 CGTGAGCAGCGGAAGGCAGACAGGCGCCAGAGCCCAGCACTCCCTTTTCCAGCAGCTGTGGTGGGGGAGGGTTCCCCTCC
 481 AGTTTGTCAAGAGTTGAAGGAGGCTCTGTGGCCAGGTGACCTGGCTGCCTTCCACTCCTTGTACCTCAGTCTAAACATGG
 561 AGTGGCCGCTGACAAGGCGCTCCAGCCCCAGAGCCAGCGTCTTCATGGGGAAGATGAATGGACCTGAGTAGCTGAAGGAA
 641 GGCCCCTCCCTACCCAAAGACTGGAGGCTTCTCAGCCTCAATTTCCCTGTCTGTACAGCTGAGGGCTCTGCCTGTCCCCC
 721 ACTGCTATCAGTATGGAACCCCAGCTGGGGTCCCCTATTGAGTGCCGACTCCCCCCACCGCCAGCAGCTGCTCCTCCAGC
 801 CACACCCCTCCTGCTCCCCCCACCCCTAGCCCTTGACCCTGGCTGGCCTGCCCCGCTCCACAGGCCACCAGATGGGCTCC
 881 TGAGACCCTCCCCAGGCTGCTTACAGCTCATTCTGCTGGGGGTAGAGATGAGGGGAGGGAGTAAGTTAAACCTTGGACTA
 961 GCAAGTAGAAGCCTGGGGGGATGCGTGTGCCTCAGTTTCCTCCTCCACAACTGAATATAGTGGCTGAAAACTGGGGAGAT
1041 ACTTGATGGCGCGAATGTCCGTTTTCTCTCCCTTCCCACCTCCTGCAGGAAGCAGGACGGGGCAGGCAGCACCTGGTAGG
1121 CACAGTGCTTTGCCCCTCCTCCCCTTCCCTTCTGGAAGTCTTGGGGCCTCAGTGCTTGCAACAGCCGGCCTTGGGCAAAT
1201 AAAAGACTAGGTTGTTTACTAGCCTTGCTTGGAGCTTCATCCTTGGAAACGGGTGGCACCTCATATCCCCCCAGCCGTGG
1281 TCTGTGATACAACCTCTCCATCCTCAGCCTAGGGCCTCAGAGCTACCCTTCACCCAAAAGAGGGGTGGGGGTGAACACTC
1361 AGACAATCTGAGAGGGGGTAGTCTAATAGAGCCATCTGGAGAAGGGAGTGGCAGAGCCAGTCTGTGCTGACCAGTCTGTG
1441 TCCCGGGACGCATCCCCACCCGTCTGTCCAAGGCTTTGTCCCACCAGCTGCAGCCAGCAGCCTCAGAACCCAAAATGAGG
1521 GTAGCATAGATAAGACTGCTGAGCCCCCTTTCTGTGGTCTTTCCTTTCCATGACCTAGAGAAAAGAGCTTTGCTGGAGGG
1601 AGACCCCCAAAAAGAATTAGGGTGCTAACATCCCACCAAAAGCATCATCCCACCCAAAATGTTGCTTTTCATTCTATGTC
1681 AATAATTTAAGGTGGAATTTCTCTCACCCTGTGGAGATGAAAGTGGCAAAAGGTTGTCCCAGCAGTGTTGGGGGATGGGG
1761 TGTGCACATCATTCTTTTGGGGGTAGATGACCTGCTGGCTGGTGGGCTTTTCTCCAGGACTACTGCAGGTAGAGACCCTC
1841 TGGGCTTGTGTGGAGTGGGAGCAGCCGTGTTGGGACTATGGGGAGGAGCTGGTCTGGGTGCAAATTAAGGCCAGTGTTGG
1921 GGTCTGAGTGCTGTCCAGAAAGGCTGTGTGACCAACCCTCACTAGTTCCTGAGGTCAGGGTCTCCATGTTAGGGAACAGA
2001 GCAAGAGACTTGGAACAGCTCCCTACAGCTGCACTTCTAGAAGGTCAGCCTGTCCGATTCTTGTAACCTGGAGGTCCCTC
2081 CCCATCTGCAGCCCCCTGAGCTGCAGGAGCGGCCCCATCAGTGCACCTGATTGGAACACACTAGATTTCAGGTCCTGGAA
2161 ACTGGGCGCTAGGATCCGTTTCCCTGGCTGCAGAGAGTGGGAGGTGTGATGTGGAATATCCCTTCTCCCAGCACACCCCA
2241 ATTAATACTGAAGAGTAGGGCAGGAGGAGGTGCTGGGAAAACCGGGTTTCTTGGCACATGGGGGTGCAAGCACTGTGGTT
2321 GAAATTGGCCATGTCCAAGGCACACCAGACGATTTCAGGTCATTTTTAGCCCTAGACTGGAAAGGGGTCAGGGGACAGGT
2401 GACCTGGGCTCAGCCCCCAGCAGCTCCCAACTGCCCCTCTCCCAAGCAACTCCTGATCCCTGCTTTTGAGGAAATAAACA
2481 AATAAAACCCCGCTATCTCCGAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' gguaGAAGGAAGUCGGAg 5'
              ||||  ||||||| 
Target 5' gaggCTTC--TCAGCCTc 3'
 664 - 679 150.00 -16.40
2 
miRNA  3' gguAGA---AGGAAGUCGGAg 5'
             |||   ||| ||||||| 
Target 5' accTCTCCATCC-TCAGCCTa 3'
 1292 - 1311 150.00 -17.40
3 
miRNA  3' gguaGAAGG-----AAGUCGGAg 5'
              ||||:      ||||||| 
Target 5' tgcaCTTCTAGAAGGTCAGCCTg 3'
 2030 - 2052 142.00 -12.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31592236 29 COSMIC
COSN28881228 57 COSMIC
COSN16128667 108 COSMIC
COSN16128480 121 COSMIC
COSN30702656 132 COSMIC
COSN31552436 137 COSMIC
COSM8254442 151 COSMIC
COSM4936038 180 COSMIC
COSM8533847 189 COSMIC
COSM9342110 203 COSMIC
COSM4921095 216 COSMIC
COSN24303216 233 COSMIC
COSN30469206 247 COSMIC
COSN30471702 247 COSMIC
COSN30492753 259 COSMIC
COSN14373717 263 COSMIC
COSN30465570 280 COSMIC
COSN7557265 298 COSMIC
COSN30539677 332 COSMIC
COSN24311744 349 COSMIC
COSN30513730 389 COSMIC
COSN30543541 408 COSMIC
COSN7557266 411 COSMIC
COSN32063473 543 COSMIC
COSN20106645 1019 COSMIC
COSN8520003 1149 COSMIC
COSN26562595 1223 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1171299719 3 dbSNP
rs970062146 6 dbSNP
rs767515211 7 dbSNP
rs750569263 8 dbSNP
rs756256510 12 dbSNP
rs780198034 16 dbSNP
rs1411887987 23 dbSNP
rs78533174 27 dbSNP
rs41313335 38 dbSNP
rs1365979127 42 dbSNP
rs1231042171 43 dbSNP
rs762339326 46 dbSNP
rs1447430328 49 dbSNP
rs906389051 53 dbSNP
rs1194145869 55 dbSNP
rs143774094 71 dbSNP
rs1033616634 73 dbSNP
rs1188760043 76 dbSNP
rs920895329 77 dbSNP
rs1490671842 79 dbSNP
rs536714521 82 dbSNP
rs1165819183 95 dbSNP
rs1344728720 96 dbSNP
rs556671154 100 dbSNP
rs375067234 101 dbSNP
rs1050821088 102 dbSNP
rs372824048 107 dbSNP
rs772613378 109 dbSNP
rs778225263 111 dbSNP
rs539223531 112 dbSNP
rs745452451 117 dbSNP
rs1298488320 124 dbSNP
rs768237190 125 dbSNP
rs769337598 129 dbSNP
rs201991488 131 dbSNP
rs768154723 132 dbSNP
rs200421694 133 dbSNP
rs774219751 134 dbSNP
rs1372127877 135 dbSNP
rs767627771 138 dbSNP
rs750370980 142 dbSNP
rs1168107640 144 dbSNP
rs760631983 146 dbSNP
rs370747877 147 dbSNP
rs753817796 150 dbSNP
rs375604007 154 dbSNP
rs1251790061 155 dbSNP
rs1037252644 157 dbSNP
rs1180589664 159 dbSNP
rs1384893970 160 dbSNP
rs898347641 161 dbSNP
rs778977986 162 dbSNP
rs1331623594 165 dbSNP
rs753097631 166 dbSNP
rs1347081220 168 dbSNP
rs1200774973 174 dbSNP
rs922753956 179 dbSNP
rs932863980 188 dbSNP
rs1343639496 189 dbSNP
rs150966477 190 dbSNP
rs1482160463 191 dbSNP
rs749134712 193 dbSNP
rs1252607116 196 dbSNP
rs757642428 199 dbSNP
rs368570056 207 dbSNP
rs1407881001 209 dbSNP
rs370348671 210 dbSNP
rs1269900772 212 dbSNP
rs1379838312 212 dbSNP
rs748698395 213 dbSNP
rs768405680 214 dbSNP
rs374697837 216 dbSNP
rs748012287 217 dbSNP
rs772006352 223 dbSNP
rs140821387 224 dbSNP
rs1368121770 227 dbSNP
rs1478654731 230 dbSNP
rs773737651 231 dbSNP
rs773074614 234 dbSNP
rs760688992 236 dbSNP
rs1434332588 237 dbSNP
rs368000179 240 dbSNP
rs776817804 242 dbSNP
rs759500572 243 dbSNP
rs765565694 244 dbSNP
rs752905550 246 dbSNP
rs1427411205 248 dbSNP
rs1010345098 250 dbSNP
rs758561778 254 dbSNP
rs764451819 255 dbSNP
rs1335888241 257 dbSNP
rs751882648 262 dbSNP
rs1246761256 263 dbSNP
rs372210741 269 dbSNP
rs1189313018 274 dbSNP
rs373253256 275 dbSNP
rs1461404525 277 dbSNP
rs574075510 280 dbSNP
rs1438103068 288 dbSNP
rs1266868590 290 dbSNP
rs1226022410 291 dbSNP
rs1033978449 292 dbSNP
rs543148115 293 dbSNP
rs563036884 295 dbSNP
rs1161286599 296 dbSNP
rs1338979363 297 dbSNP
rs774510032 301 dbSNP
rs1453565522 303 dbSNP
rs974927091 311 dbSNP
rs748398460 312 dbSNP
rs114245612 319 dbSNP
rs1409405275 321 dbSNP
rs1368023436 328 dbSNP
rs1384673443 330 dbSNP
rs955017380 332 dbSNP
rs41276664 335 dbSNP
rs866165607 338 dbSNP
rs376181985 339 dbSNP
rs1350831675 342 dbSNP
rs939740048 344 dbSNP
rs1444808327 351 dbSNP
rs1275827326 356 dbSNP
rs1312149441 362 dbSNP
rs966704562 364 dbSNP
rs1245403291 365 dbSNP
rs972488657 366 dbSNP
rs773271761 370 dbSNP
rs1456702740 373 dbSNP
rs761148696 384 dbSNP
rs1209122552 388 dbSNP
rs976791341 389 dbSNP
rs1316821141 395 dbSNP
rs919726838 402 dbSNP
rs1178321623 403 dbSNP
rs931140340 409 dbSNP
rs1029714669 411 dbSNP
rs766601555 412 dbSNP
rs985649114 416 dbSNP
rs1323520871 417 dbSNP
rs559396719 426 dbSNP
rs962990930 427 dbSNP
rs1389216778 430 dbSNP
rs1186223290 433 dbSNP
rs777224994 444 dbSNP
rs140759094 456 dbSNP
rs1242119089 457 dbSNP
rs1198093396 464 dbSNP
rs547494584 466 dbSNP
rs1293852608 470 dbSNP
rs1223001934 471 dbSNP
rs1341170664 472 dbSNP
rs948101545 473 dbSNP
rs928970464 479 dbSNP
rs1362757385 489 dbSNP
rs1010708976 490 dbSNP
rs1046158456 502 dbSNP
rs1177030440 507 dbSNP
rs1021666796 521 dbSNP
rs1408085401 525 dbSNP
rs1409621371 531 dbSNP
rs1463850937 540 dbSNP
rs1369054007 548 dbSNP
rs768110617 561 dbSNP
rs369312970 563 dbSNP
rs927740464 565 dbSNP
rs937811045 568 dbSNP
rs904654606 569 dbSNP
rs1272606536 573 dbSNP
rs1476738108 578 dbSNP
rs996292400 579 dbSNP
rs1200001168 580 dbSNP
rs1482626085 582 dbSNP
rs1029144803 583 dbSNP
rs955108822 593 dbSNP
rs1224719592 594 dbSNP
rs1308364907 595 dbSNP
rs1010804190 599 dbSNP
rs1265528762 608 dbSNP
rs1325695151 611 dbSNP
rs1316516729 623 dbSNP
rs987758187 624 dbSNP
rs1409680588 628 dbSNP
rs1198417008 639 dbSNP
rs902494532 642 dbSNP
rs1439797953 643 dbSNP
rs1443380544 666 dbSNP
rs1196974545 679 dbSNP
rs1019666622 686 dbSNP
rs150093187 687 dbSNP
rs1029663886 688 dbSNP
rs1467796568 699 dbSNP
rs1480790033 700 dbSNP
rs1200127213 702 dbSNP
rs1177078154 717 dbSNP
rs1472192532 720 dbSNP
rs972439753 721 dbSNP
rs372900918 728 dbSNP
rs763607380 730 dbSNP
rs868185071 732 dbSNP
rs1007425054 748 dbSNP
rs1237137038 753 dbSNP
rs1431344267 755 dbSNP
rs1017083332 758 dbSNP
rs530099424 767 dbSNP
rs550336370 768 dbSNP
rs1046557713 771 dbSNP
rs979920463 777 dbSNP
rs927943489 778 dbSNP
rs375868791 780 dbSNP
rs1411347516 781 dbSNP
rs1283270121 787 dbSNP
rs1321155713 795 dbSNP
rs539235826 798 dbSNP
rs972949387 799 dbSNP
rs1407680030 800 dbSNP
rs570719469 806 dbSNP
rs918858807 807 dbSNP
rs114639179 817 dbSNP
rs1405025016 820 dbSNP
rs1057062096 822 dbSNP
rs1412714790 823 dbSNP
rs1181991215 825 dbSNP
rs913183917 826 dbSNP
rs946065502 829 dbSNP
rs1243971577 830 dbSNP
rs927656264 831 dbSNP
rs1463582993 832 dbSNP
rs1217082925 837 dbSNP
rs937774655 837 dbSNP
rs751127951 839 dbSNP
rs1310958573 840 dbSNP
rs1248612235 848 dbSNP
rs2240945 854 dbSNP
rs915068631 855 dbSNP
rs371423026 856 dbSNP
rs1208336588 862 dbSNP
rs1289409120 873 dbSNP
rs1042263248 875 dbSNP
rs1490552094 877 dbSNP
rs1224818673 885 dbSNP
rs1349214492 886 dbSNP
rs902442420 889 dbSNP
rs996238190 896 dbSNP
rs1261045043 897 dbSNP
rs554949609 899 dbSNP
rs1386148108 909 dbSNP
rs1476820104 922 dbSNP
rs998108151 923 dbSNP
rs780030329 925 dbSNP
rs1187631062 928 dbSNP
rs1488475114 932 dbSNP
rs1051099870 933 dbSNP
rs890640426 936 dbSNP
rs1476265238 942 dbSNP
rs1227124850 943 dbSNP
rs1009528051 957 dbSNP
rs1006961815 962 dbSNP
rs1382292473 965 dbSNP
rs1017446535 973 dbSNP
rs1384231036 978 dbSNP
rs1301192902 980 dbSNP
rs1424840504 981 dbSNP
rs1168205649 984 dbSNP
rs962885851 984 dbSNP
rs574137546 985 dbSNP
rs141115931 986 dbSNP
rs962649552 988 dbSNP
rs1267445103 991 dbSNP
rs1202170141 993 dbSNP
rs754026881 996 dbSNP
rs1251469784 1007 dbSNP
rs1194421608 1013 dbSNP
rs993827512 1014 dbSNP
rs1243059552 1015 dbSNP
rs201525896 1015 dbSNP
rs200432145 1016 dbSNP
rs3217091 1016 dbSNP
rs199707278 1018 dbSNP
rs1360450594 1021 dbSNP
rs1311052769 1032 dbSNP
rs556641571 1035 dbSNP
rs1281336471 1038 dbSNP
rs1026682019 1043 dbSNP
rs1225197502 1043 dbSNP
rs1345928495 1044 dbSNP
rs1034675808 1051 dbSNP
rs1389460270 1052 dbSNP
rs1248401502 1053 dbSNP
rs576489571 1054 dbSNP
rs952422073 1058 dbSNP
rs750022870 1061 dbSNP
rs147022760 1062 dbSNP
rs779676534 1069 dbSNP
rs959908622 1074 dbSNP
rs1439896708 1077 dbSNP
rs1252258062 1078 dbSNP
rs1195980832 1085 dbSNP
rs753276978 1088 dbSNP
rs993109268 1098 dbSNP
rs913140019 1099 dbSNP
rs879231322 1100 dbSNP
rs1236681430 1102 dbSNP
rs1185161933 1104 dbSNP
rs749257705 1114 dbSNP
rs1395608170 1128 dbSNP
rs1404162112 1135 dbSNP
rs559469457 1139 dbSNP
rs754908990 1140 dbSNP
rs933891076 1149 dbSNP
rs572929921 1151 dbSNP
rs1048340 1153 dbSNP
rs1388610585 1154 dbSNP
rs1157290338 1155 dbSNP
rs1471379232 1159 dbSNP
rs1048354 1161 dbSNP
rs1043019971 1162 dbSNP
rs1182099022 1167 dbSNP
rs1051482039 1174 dbSNP
rs1240882910 1178 dbSNP
rs542139776 1179 dbSNP
rs1205063811 1182 dbSNP
rs561952372 1187 dbSNP
rs185888387 1188 dbSNP
rs1038415436 1203 dbSNP
rs1452413224 1205 dbSNP
rs35885713 1208 dbSNP
rs1050539275 1210 dbSNP
rs890578341 1218 dbSNP
rs1159716707 1230 dbSNP
rs1261149797 1236 dbSNP
rs746774559 1237 dbSNP
rs1380904702 1238 dbSNP
rs1394739364 1240 dbSNP
rs1453499750 1243 dbSNP
rs994285528 1251 dbSNP
rs772253835 1256 dbSNP
rs1025818189 1260 dbSNP
rs907395668 1261 dbSNP
rs898065533 1269 dbSNP
rs1386299679 1270 dbSNP
rs1003115895 1272 dbSNP
rs1423122537 1273 dbSNP
rs550150553 1275 dbSNP
rs1184985958 1276 dbSNP
rs1444716541 1277 dbSNP
rs773503308 1278 dbSNP
rs1307336261 1285 dbSNP
rs1026628212 1288 dbSNP
rs952372120 1294 dbSNP
rs1190374029 1300 dbSNP
rs758639973 1303 dbSNP
rs555753579 1307 dbSNP
rs1221545179 1314 dbSNP
rs771329624 1323 dbSNP
rs1262510501 1328 dbSNP
rs1294223531 1336 dbSNP
rs1352777806 1336 dbSNP
rs1198619492 1338 dbSNP
rs1338849865 1343 dbSNP
rs776802294 1355 dbSNP
rs1262318942 1360 dbSNP
rs1432936021 1360 dbSNP
rs960092965 1361 dbSNP
rs1303058496 1363 dbSNP
rs1403501895 1365 dbSNP
rs868527368 1367 dbSNP
rs977835055 1372 dbSNP
rs913079133 1373 dbSNP
rs1235970313 1374 dbSNP
rs1418316487 1375 dbSNP
rs1165721845 1377 dbSNP
rs377012109 1378 dbSNP
rs986710956 1386 dbSNP
rs565067958 1389 dbSNP
rs1198519053 1395 dbSNP
rs978660513 1409 dbSNP
rs1489807539 1411 dbSNP
rs1364974157 1417 dbSNP
rs911131261 1443 dbSNP
rs925918899 1445 dbSNP
rs532612779 1446 dbSNP
rs931985282 1450 dbSNP
rs986577971 1451 dbSNP
rs1283205027 1453 dbSNP
rs138184459 1462 dbSNP
rs930029178 1463 dbSNP
rs370371883 1467 dbSNP
rs1353622355 1468 dbSNP
rs1326381671 1485 dbSNP
rs1372890247 1487 dbSNP
rs1411162181 1496 dbSNP
rs1423673778 1502 dbSNP
rs143664445 1521 dbSNP
rs1431309886 1527 dbSNP
rs190168332 1533 dbSNP
rs145917322 1540 dbSNP
rs1231407277 1546 dbSNP
rs930853754 1562 dbSNP
rs1034569862 1563 dbSNP
rs368192853 1574 dbSNP
rs761363025 1579 dbSNP
rs1326366480 1581 dbSNP
rs1284471618 1588 dbSNP
rs1420967727 1589 dbSNP
rs1001192432 1598 dbSNP
rs570467171 1601 dbSNP
rs895548756 1611 dbSNP
rs1255850985 1612 dbSNP
rs967716083 1620 dbSNP
rs1443863470 1622 dbSNP
rs1195978313 1630 dbSNP
rs1272286534 1643 dbSNP
rs1252112137 1644 dbSNP
rs1430939833 1660 dbSNP
rs1014438364 1662 dbSNP
rs182426410 1663 dbSNP
rs967190386 1673 dbSNP
rs1399897832 1675 dbSNP
rs978608305 1677 dbSNP
rs1481672413 1683 dbSNP
rs1470660589 1695 dbSNP
rs1242760069 1697 dbSNP
rs1181889372 1702 dbSNP
rs1169015011 1709 dbSNP
rs148331426 1712 dbSNP
rs1264312195 1719 dbSNP
rs1315531409 1720 dbSNP
rs1286842495 1724 dbSNP
rs570233262 1728 dbSNP
rs141444537 1729 dbSNP
rs1462721951 1747 dbSNP
rs953331289 1752 dbSNP
rs374155409 1754 dbSNP
rs1449848103 1761 dbSNP
rs986137434 1763 dbSNP
rs911906603 1767 dbSNP
rs750123992 1768 dbSNP
rs755659465 1771 dbSNP
rs1303386267 1773 dbSNP
rs944787870 1775 dbSNP
rs546948330 1780 dbSNP
rs972571495 1782 dbSNP
rs1404406687 1792 dbSNP
rs1452901665 1794 dbSNP
rs919391417 1798 dbSNP
rs1343335618 1801 dbSNP
rs2240944 1815 dbSNP
rs1346082034 1816 dbSNP
rs150827739 1819 dbSNP
rs905430986 1821 dbSNP
rs938286555 1830 dbSNP
rs1256895289 1835 dbSNP
rs919914540 1836 dbSNP
rs1306685536 1857 dbSNP
rs1055440269 1860 dbSNP
rs1244331483 1861 dbSNP
rs75629323 1867 dbSNP
rs1359096045 1868 dbSNP
rs1047156882 1870 dbSNP
rs1290580881 1881 dbSNP
rs1243268370 1883 dbSNP
rs928708535 1886 dbSNP
rs1360998084 1888 dbSNP
rs1013968649 1892 dbSNP
rs1312865032 1898 dbSNP
rs1359858221 1899 dbSNP
rs1290502229 1905 dbSNP
rs1400392135 1914 dbSNP
rs1364691574 1915 dbSNP
rs1252700684 1922 dbSNP
rs938830218 1923 dbSNP
rs1426846088 1924 dbSNP
rs113086733 1939 dbSNP
rs1169912459 1947 dbSNP
rs762578971 1956 dbSNP
rs1426797925 1958 dbSNP
rs894682291 1959 dbSNP
rs1221111744 1981 dbSNP
rs1490296976 1985 dbSNP
rs1267146620 1987 dbSNP
rs1225153048 1993 dbSNP
rs1019992584 1997 dbSNP
rs902978323 2002 dbSNP
rs1226078889 2008 dbSNP
rs1305193768 2010 dbSNP
rs1268919334 2018 dbSNP
rs999147978 2021 dbSNP
rs866180391 2024 dbSNP
rs999979341 2040 dbSNP
rs955290719 2049 dbSNP
rs1301106769 2054 dbSNP
rs1406536998 2055 dbSNP
rs1032837513 2056 dbSNP
rs953280882 2057 dbSNP
rs1297763767 2064 dbSNP
rs1460531997 2092 dbSNP
rs1356311476 2093 dbSNP
rs116967727 2095 dbSNP
rs1427773465 2097 dbSNP
rs774190847 2097 dbSNP
rs1434070421 2103 dbSNP
rs201130942 2108 dbSNP
rs1194839221 2111 dbSNP
rs151141817 2111 dbSNP
rs187942668 2120 dbSNP
rs192221871 2124 dbSNP
rs2240943 2126 dbSNP
rs532388503 2136 dbSNP
rs966449033 2145 dbSNP
rs1198690345 2163 dbSNP
rs1322820332 2166 dbSNP
rs10124503 2168 dbSNP
rs1225130058 2172 dbSNP
rs559591272 2173 dbSNP
rs116246421 2174 dbSNP
rs928654563 2176 dbSNP
rs1367482997 2177 dbSNP
rs548335525 2178 dbSNP
rs1469346491 2179 dbSNP
rs184074843 2185 dbSNP
rs926796479 2187 dbSNP
rs1363535614 2189 dbSNP
rs371545217 2190 dbSNP
rs538789986 2197 dbSNP
rs1180081623 2199 dbSNP
rs1361099051 2200 dbSNP
rs1178775186 2209 dbSNP
rs1214951039 2210 dbSNP
rs531082096 2221 dbSNP
rs1057123183 2235 dbSNP
rs34688153 2236 dbSNP
rs1261181225 2242 dbSNP
rs1345477273 2247 dbSNP
rs537956542 2247 dbSNP
rs1356853084 2262 dbSNP
rs1244739459 2267 dbSNP
rs1236570780 2274 dbSNP
rs1379476144 2278 dbSNP
rs916880957 2281 dbSNP
rs747267090 2284 dbSNP
rs546978601 2287 dbSNP
rs1055912152 2295 dbSNP
rs1291921837 2295 dbSNP
rs1339299025 2302 dbSNP
rs1360950349 2307 dbSNP
rs949747241 2316 dbSNP
rs1214349803 2318 dbSNP
rs1242040313 2326 dbSNP
rs1157261788 2328 dbSNP
rs1455661447 2332 dbSNP
rs1486441357 2341 dbSNP
rs916035999 2345 dbSNP
rs1158804157 2351 dbSNP
rs1188668075 2363 dbSNP
rs947597657 2364 dbSNP
rs771116198 2374 dbSNP
rs550839131 2378 dbSNP
rs1203181993 2384 dbSNP
rs1444267434 2390 dbSNP
rs999927007 2390 dbSNP
rs1164413931 2407 dbSNP
rs761093937 2414 dbSNP
rs766426224 2418 dbSNP
rs1043248766 2427 dbSNP
rs570854585 2428 dbSNP
rs999095545 2438 dbSNP
rs1158398939 2448 dbSNP
rs539051351 2451 dbSNP
rs1326418244 2459 dbSNP
rs1344553050 2460 dbSNP
rs1316782748 2461 dbSNP
rs1384277974 2476 dbSNP
rs1052046055 2480 dbSNP
rs1431326755 2480 dbSNP
rs1423657077 2489 dbSNP
rs755153726 2490 dbSNP
rs138173359 2493 dbSNP
rs1290445356 2501 dbSNP
rs888962138 2503 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' gguaGAAGGAAGUCGGAg 5'
              ||||  ||||||| 
Target 5' ----CUUC--UCAGCCUc 3'
 		1 - 12
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_030914 | 3UTR | CCAGCCCCAGAGCCAGCGUCUUCAUGGGGAAGAUGAAUGGACCUGAGUAGCUGAAGGAAGGCCCCUCCCUACCCAAAGACUGGAGGCUUCUCAGCCUCAAUUUCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_030914 | 3UTR | GAAGAUGAAUGGACCUGAGUAGCUGAAGGAAGGCCCCUCCCUACCCAAAGACUGGAGGCUUCUCAGCCUCAAUUUCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_030914 | 3UTR | UCUUCAUGGGGAAGAUGAAUGGACCUGAGUAGCUGAAGGAAGGCCCCUCCCUACCCAAAGACUGGAGGCUUCUCAGCCUCAAUUUCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_030914 | 3UTR | CGUCUUCAUGGGGAAGAUGAAUGGACCUGAGUAGCUGAAGGAAGGCCCCUCCCUACCCAAAGACUGGAGGCUUCUCAGCCUCAAUUUCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_030914 | 3UTR | CUUCAUGGGGAAGAUGAAUGGACCUGAGUAGCUGAAGGAAGGCCCCUCCCUACCCAAAGACUGGAGGCUUCUCAGCCUCAAUUUCCCUGUCUGUACAGCUGAGGGCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_030914 | 3UTR | UGGGGAAGAUGAAUGGACCUGAGUAGCUGAAGGAAGGCCCCUCCCUACCCAAAGACUGGAGGCUUCUCAGCCUCAAUUUCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000372850.1 | 3UTR | CUUCUCAGCCUCAAUUUCCCUGUCUGUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
390 hsa-miR-4419b Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT061343 WEE1 WEE1 G2 checkpoint kinase 2 4
MIRT072743 GLCE glucuronic acid epimerase 2 2
MIRT180549 TXNIP thioredoxin interacting protein 2 2
MIRT186147 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT271044 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 4
MIRT334761 PPP1R15B protein phosphatase 1 regulatory subunit 15B 2 6
MIRT443279 TSPAN15 tetraspanin 15 2 2
MIRT447047 ZNF439 zinc finger protein 439 2 2
MIRT447351 KIF6 kinesin family member 6 2 2
MIRT448925 CKS1B CDC28 protein kinase regulatory subunit 1B 2 2
MIRT452899 PSD4 pleckstrin and Sec7 domain containing 4 2 2
MIRT453087 SUMF2 sulfatase modifying factor 2 2 2
MIRT454071 SLC35E3 solute carrier family 35 member E3 2 2
MIRT456216 LIX1L limb and CNS expressed 1 like 2 6
MIRT456951 LRP10 LDL receptor related protein 10 2 2
MIRT458025 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT459999 RFT1 RFT1 homolog 2 2
MIRT460046 CDCP1 CUB domain containing protein 1 2 2
MIRT460982 STK17B serine/threonine kinase 17b 2 2
MIRT464405 URM1 ubiquitin related modifier 1 2 2
MIRT466256 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 2
MIRT466536 TBXA2R thromboxane A2 receptor 2 2
MIRT470922 PLD5 phospholipase D family member 5 2 8
MIRT472835 MTMR10 myotubularin related protein 10 2 6
MIRT473352 MEMO1 mediator of cell motility 1 2 2
MIRT475504 HSP90B1 heat shock protein 90 beta family member 1 2 2
MIRT478862 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT480898 BCL9L B-cell CLL/lymphoma 9 like 2 2
MIRT482686 NXN nucleoredoxin 2 4
MIRT484128 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT486172 TLE3 transducin like enhancer of split 3 2 4
MIRT486539 CLCN7 chloride voltage-gated channel 7 2 2
MIRT486588 ZNF619 zinc finger protein 619 2 2
MIRT495475 ALDOA aldolase, fructose-bisphosphate A 2 2
MIRT495536 TXNRD2 thioredoxin reductase 2 2 2
MIRT495566 UNC5C unc-5 netrin receptor C 2 2
MIRT495719 PADI1 peptidyl arginine deiminase 1 2 2
MIRT495890 CLOCK clock circadian regulator 2 2
MIRT495932 SLC7A5P2 solute carrier family 7 member 5 pseudogene 2 2 2
MIRT496026 ZBED3 zinc finger BED-type containing 3 2 2
MIRT496216 PAX6 paired box 6 2 2
MIRT496349 VAMP1 vesicle associated membrane protein 1 2 2
MIRT496354 PPY pancreatic polypeptide 2 2
MIRT496400 ZSCAN16 zinc finger and SCAN domain containing 16 2 2
MIRT496416 PARVB parvin beta 2 2
MIRT496458 N6AMT1 N-6 adenine-specific DNA methyltransferase 1 2 2
MIRT496519 GINS2 GINS complex subunit 2 2 2
MIRT496562 SLC39A9 solute carrier family 39 member 9 2 2
MIRT498605 KRT8 keratin 8 2 2
MIRT503434 SLC25A45 solute carrier family 25 member 45 2 6
MIRT503573 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 2
MIRT503847 ATP13A4 ATPase 13A4 2 4
MIRT504247 LHPP phospholysine phosphohistidine inorganic pyrophosphate phosphatase 2 4
MIRT505606 SLC35F1 solute carrier family 35 member F1 2 2
MIRT507749 CERS2 ceramide synthase 2 2 4
MIRT508411 C1orf210 chromosome 1 open reading frame 210 2 6
MIRT508508 RSRC1 arginine and serine rich coiled-coil 1 2 6
MIRT508944 AK4 adenylate kinase 4 2 4
MIRT509460 ZNF587 zinc finger protein 587 2 6
MIRT509862 ZNF641 zinc finger protein 641 2 4
MIRT511397 IKZF3 IKAROS family zinc finger 3 2 6
MIRT512517 BTBD19 BTB domain containing 19 2 2
MIRT513507 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 6
MIRT514155 TMEM145 transmembrane protein 145 2 4
MIRT514486 SLPI secretory leukocyte peptidase inhibitor 2 4
MIRT514521 SHISA9 shisa family member 9 2 2
MIRT514970 KLLN killin, p53-regulated DNA replication inhibitor 2 4
MIRT515030 IRAK4 interleukin 1 receptor associated kinase 4 2 6
MIRT515963 C9orf156 tRNA methyltransferase O 2 2
MIRT516092 ZBTB8OS zinc finger and BTB domain containing 8 opposite strand 2 4
MIRT517223 PRIM1 DNA primase subunit 1 2 4
MIRT517459 PEX26 peroxisomal biogenesis factor 26 2 4
MIRT517790 EFCAB11 EF-hand calcium binding domain 11 2 2
MIRT517979 DSCR3 DSCR3 arrestin fold containing 2 2
MIRT519458 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT519599 ZNF805 zinc finger protein 805 2 2
MIRT520339 UBXN2A UBX domain protein 2A 2 2
MIRT521345 RPP14 ribonuclease P/MRP subunit p14 2 2
MIRT521571 PTPLB 3-hydroxyacyl-CoA dehydratase 2 1 1
MIRT523382 GSG2 histone H3 associated protein kinase 2 8
MIRT524106 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT524886 ARHGAP11A Rho GTPase activating protein 11A 2 4
MIRT528772 CD1D CD1d molecule 2 2
MIRT530665 TRIM56 tripartite motif containing 56 2 2
MIRT531107 PEX13 peroxisomal biogenesis factor 13 2 2
MIRT531575 ILDR1 immunoglobulin like domain containing receptor 1 2 2
MIRT535173 PLEKHB2 pleckstrin homology domain containing B2 2 4
MIRT544168 HEYL hes related family bHLH transcription factor with YRPW motif-like 2 2
MIRT550582 SLC2A5 solute carrier family 2 member 5 2 2
MIRT551039 GDE1 glycerophosphodiester phosphodiesterase 1 2 4
MIRT551295 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 6
MIRT551339 MRE11A MRE11 homolog, double strand break repair nuclease 2 2
MIRT552092 SLFN12L schlafen family member 12 like 2 6
MIRT555403 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT557087 HOXB3 homeobox B3 2 2
MIRT559388 ATP11C ATPase phospholipid transporting 11C 2 2
MIRT560305 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT561028 LIN7C lin-7 homolog C, crumbs cell polarity complex component 2 2
MIRT562460 COX6B1 cytochrome c oxidase subunit 6B1 2 4
MIRT562982 PARK7 Parkinsonism associated deglycase 2 2
MIRT563548 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT564412 EMILIN2 elastin microfibril interfacer 2 2 4
MIRT569437 PCGF3 polycomb group ring finger 3 2 2
MIRT572097 EXOC8 exocyst complex component 8 2 2
MIRT575571 Cd99 CD99 antigen 2 2
MIRT575789 Tnfrsf10b tumor necrosis factor receptor superfamily, member 10b 2 2
MIRT576975 Lmtk2 lemur tyrosine kinase 2 2 2
MIRT610864 ARSA arylsulfatase A 2 2
MIRT614061 NTPCR nucleoside-triphosphatase, cancer-related 2 2
MIRT614141 THAP1 THAP domain containing 1 2 6
MIRT615235 BROX BRO1 domain and CAAX motif containing 2 2
MIRT617429 ANP32E acidic nuclear phosphoprotein 32 family member E 2 4
MIRT618882 MBL2 mannose binding lectin 2 2 2
MIRT618984 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT619196 SLC16A4 solute carrier family 16 member 4 2 2
MIRT620323 AQP6 aquaporin 6 2 2
MIRT621960 STX7 syntaxin 7 2 2
MIRT622057 SSBP2 single stranded DNA binding protein 2 2 2
MIRT624930 FBXW2 F-box and WD repeat domain containing 2 2 2
MIRT624986 ZNF665 zinc finger protein 665 2 4
MIRT625463 ZNF681 zinc finger protein 681 2 4
MIRT625497 SMAD9 SMAD family member 9 2 2
MIRT625599 KLHL23 kelch like family member 23 2 2
MIRT625668 C2orf48 chromosome 2 open reading frame 48 2 2
MIRT625888 INADL PATJ, crumbs cell polarity complex component 2 2
MIRT626161 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT626238 ZNF749 zinc finger protein 749 2 2
MIRT626631 SLC30A6 solute carrier family 30 member 6 2 2
MIRT626994 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT627898 OLFML2A olfactomedin like 2A 2 2
MIRT627988 NDRG3 NDRG family member 3 2 2
MIRT628324 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT628549 ZNF701 zinc finger protein 701 2 2
MIRT629464 WIZ widely interspaced zinc finger motifs 2 2
MIRT630527 BAZ2A bromodomain adjacent to zinc finger domain 2A 2 2
MIRT631487 KLHL21 kelch like family member 21 2 2
MIRT631957 CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 2 4
MIRT632178 CCL22 C-C motif chemokine ligand 22 2 2
MIRT632282 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT632321 TMEM185B transmembrane protein 185B 2 2
MIRT632853 IGF1 insulin like growth factor 1 2 2
MIRT632862 HSPA2 heat shock protein family A (Hsp70) member 2 2 2
MIRT633322 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT633398 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT633930 DNAH9 dynein axonemal heavy chain 9 2 2
MIRT634785 CBFA2T2 CBFA2/RUNX1 translocation partner 2 2 2
MIRT634851 ABCF1 ATP binding cassette subfamily F member 1 2 2
MIRT636370 OGFRL1 opioid growth factor receptor like 1 2 2
MIRT637219 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT637690 PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D 2 2
MIRT639196 TRAPPC2 trafficking protein particle complex 2 2 2
MIRT639599 CD3EAP CD3e molecule associated protein 2 2
MIRT639681 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT640669 ARSK arylsulfatase family member K 2 2
MIRT642377 ZNF581 zinc finger protein 581 2 2
MIRT642403 ZNF556 zinc finger protein 556 2 2
MIRT645079 UQCRQ ubiquinol-cytochrome c reductase complex III subunit VII 2 2
MIRT646475 ZNF669 zinc finger protein 669 2 2
MIRT647325 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT647490 ZNF639 zinc finger protein 639 2 2
MIRT647989 PDE12 phosphodiesterase 12 2 2
MIRT648196 CENPN centromere protein N 2 2
MIRT649006 MRPL49 mitochondrial ribosomal protein L49 2 2
MIRT650457 ZNF141 zinc finger protein 141 2 2
MIRT650533 CCDC77 coiled-coil domain containing 77 2 2
MIRT650999 ZNF770 zinc finger protein 770 2 2
MIRT653832 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 4
MIRT655734 NRXN3 neurexin 3 2 2
MIRT657577 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT658610 ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 2 2
MIRT658633 ENAH ENAH, actin regulator 2 2
MIRT659820 CASP16 caspase 16, pseudogene 2 2
MIRT661142 ZNF43 zinc finger protein 43 2 2
MIRT661201 MPPE1 metallophosphoesterase 1 2 2
MIRT661436 MANSC1 MANSC domain containing 1 2 2
MIRT661498 CHMP1B charged multivesicular body protein 1B 2 2
MIRT661682 ZNF623 zinc finger protein 623 2 2
MIRT661796 NLRC3 NLR family CARD domain containing 3 2 2
MIRT661808 NUP85 nucleoporin 85 2 2
MIRT661861 ZNF766 zinc finger protein 766 2 2
MIRT661889 EXOSC6 exosome component 6 2 2
MIRT662291 SLC29A4 solute carrier family 29 member 4 2 2
MIRT662515 ANGPT4 angiopoietin 4 2 2
MIRT662682 LRRC47 leucine rich repeat containing 47 2 2
MIRT662716 C10orf111 chromosome 10 open reading frame 111 2 4
MIRT662834 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT662890 PCDHA6 protocadherin alpha 6 2 2
MIRT663134 ULBP3 UL16 binding protein 3 2 2
MIRT663710 ABHD17B abhydrolase domain containing 17B 2 2
MIRT663869 MUC20 mucin 20, cell surface associated 2 2
MIRT664267 NMUR1 neuromedin U receptor 1 2 2
MIRT664510 POLR3K RNA polymerase III subunit K 2 2
MIRT664659 TRIM65 tripartite motif containing 65 2 2
MIRT664849 HUS1 HUS1 checkpoint clamp component 2 2
MIRT664944 CARD6 caspase recruitment domain family member 6 2 4
MIRT665348 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 2
MIRT665514 UTP15 UTP15, small subunit processome component 2 2
MIRT665648 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT665668 TRAF1 TNF receptor associated factor 1 2 2
MIRT665692 TNPO3 transportin 3 2 2
MIRT665741 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT665850 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT665940 TBC1D19 TBC1 domain family member 19 2 4
MIRT666005 SYNJ2BP synaptojanin 2 binding protein 2 2
MIRT666172 SNX27 sorting nexin family member 27 2 4
MIRT666373 SHOX short stature homeobox 2 2
MIRT667004 PDPN podoplanin 2 4
MIRT667185 NR2F6 nuclear receptor subfamily 2 group F member 6 2 4
MIRT667603 LIPC lipase C, hepatic type 2 2
MIRT667828 IRGQ immunity related GTPase Q 2 2
MIRT667862 IPCEF1 interaction protein for cytohesin exchange factors 1 2 2
MIRT668296 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 4
MIRT668463 FAM208A family with sequence similarity 208 member A 2 2
MIRT668580 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 4
MIRT669012 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT669103 CDK19 cyclin dependent kinase 19 2 2
MIRT670073 ZNF783 zinc finger family member 783 2 2
MIRT670326 CEP57L1 centrosomal protein 57 like 1 2 2
MIRT670756 HOOK3 hook microtubule tethering protein 3 2 2
MIRT670964 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT670985 MED17 mediator complex subunit 17 2 2
MIRT671195 ZNF891 zinc finger protein 891 2 2
MIRT672423 SLC10A6 solute carrier family 10 member 6 2 2
MIRT672495 YIPF4 Yip1 domain family member 4 2 2
MIRT672537 MGAM maltase-glucoamylase 2 2
MIRT672749 ZNF585B zinc finger protein 585B 2 4
MIRT673390 ZNF124 zinc finger protein 124 2 2
MIRT673452 ZNF583 zinc finger protein 583 2 2
MIRT673917 DCTN6 dynactin subunit 6 2 2
MIRT673952 ZNF500 zinc finger protein 500 2 2
MIRT674102 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT674167 BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 2 2
MIRT674206 FUT2 fucosyltransferase 2 2 2
MIRT674452 PURB purine rich element binding protein B 2 4
MIRT674687 PLCE1 phospholipase C epsilon 1 2 2
MIRT674701 TMEM59 transmembrane protein 59 2 2
MIRT674800 NPR1 natriuretic peptide receptor 1 2 4
MIRT675247 MAK male germ cell associated kinase 2 2
MIRT676012 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676374 APTX aprataxin 2 2
MIRT676834 TNFSF15 TNF superfamily member 15 2 2
MIRT678193 CRCP CGRP receptor component 2 2
MIRT678293 PTRH2 peptidyl-tRNA hydrolase 2 2 2
MIRT679532 RAB36 RAB36, member RAS oncogene family 2 2
MIRT679669 RABAC1 Rab acceptor 1 2 2
MIRT679850 GPR75 G protein-coupled receptor 75 2 2
MIRT680533 PRIM2 DNA primase subunit 2 2 2
MIRT680563 ZNF584 zinc finger protein 584 2 2
MIRT680577 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT680849 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT680888 MAPK1IP1L mitogen-activated protein kinase 1 interacting protein 1 like 2 2
MIRT680940 EVC EvC ciliary complex subunit 1 2 2
MIRT680964 SLC15A1 solute carrier family 15 member 1 2 4
MIRT681017 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 2 2
MIRT681065 PAQR7 progestin and adipoQ receptor family member 7 2 2
MIRT681209 ZNF638 zinc finger protein 638 2 2
MIRT681291 RFC2 replication factor C subunit 2 2 2
MIRT681366 BRI3BP BRI3 binding protein 2 2
MIRT681517 STAT2 signal transducer and activator of transcription 2 2 2
MIRT681549 ZNF738 zinc finger protein 738 2 2
MIRT681574 ABHD15 abhydrolase domain containing 15 2 2
MIRT681597 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT681806 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT681912 SLC11A2 solute carrier family 11 member 2 2 2
MIRT681953 SLC19A3 solute carrier family 19 member 3 2 2
MIRT682037 AGXT2 alanine--glyoxylate aminotransferase 2 2 4
MIRT682111 ITGA3 integrin subunit alpha 3 2 4
MIRT682190 SLC38A7 solute carrier family 38 member 7 2 2
MIRT682247 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT682394 PHACTR4 phosphatase and actin regulator 4 2 2
MIRT682554 EXOSC2 exosome component 2 2 2
MIRT682665 CASP8 caspase 8 2 2
MIRT683283 ZNF99 zinc finger protein 99 2 2
MIRT683359 SCARF1 scavenger receptor class F member 1 2 2
MIRT683453 ACOT2 acyl-CoA thioesterase 2 2 2
MIRT683596 GSTCD glutathione S-transferase C-terminal domain containing 2 2
MIRT683661 ZNF695 zinc finger protein 695 2 2
MIRT683770 CPE carboxypeptidase E 2 2
MIRT683807 NOTO notochord homeobox 2 2
MIRT684462 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT684525 C1orf174 chromosome 1 open reading frame 174 2 2
MIRT684985 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT685012 CXorf56 chromosome X open reading frame 56 2 2
MIRT685072 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685115 DTD2 D-tyrosyl-tRNA deacylase 2 (putative) 2 2
MIRT685477 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT685831 SLC27A1 solute carrier family 27 member 1 2 2
MIRT686032 UMPS uridine monophosphate synthetase 2 2
MIRT686559 TPM3 tropomyosin 3 2 2
MIRT687287 PARP2 poly(ADP-ribose) polymerase 2 2 2
MIRT687309 OTUD7B OTU deubiquitinase 7B 2 2
MIRT688085 GLUL glutamate-ammonia ligase 2 2
MIRT688168 GABPB1 GA binding protein transcription factor beta subunit 1 2 2
MIRT688584 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT688601 CYCS cytochrome c, somatic 2 2
MIRT688921 C11orf84 chromosome 11 open reading frame 84 2 2
MIRT689285 C5AR2 complement component 5a receptor 2 2 2
MIRT689622 AKAP6 A-kinase anchoring protein 6 2 2
MIRT690051 C6orf141 chromosome 6 open reading frame 141 2 2
MIRT690224 C5orf45 MRN complex interacting protein 2 2
MIRT690272 CAMLG calcium modulating ligand 2 2
MIRT690331 MRPS30 mitochondrial ribosomal protein S30 2 2
MIRT690480 ZNF33A zinc finger protein 33A 2 2
MIRT690526 ZNF566 zinc finger protein 566 2 2
MIRT690581 MICA MHC class I polypeptide-related sequence A 2 2
MIRT690675 RPF2 ribosome production factor 2 homolog 2 2
MIRT690790 ZNF589 zinc finger protein 589 2 2
MIRT690873 PLEKHG2 pleckstrin homology and RhoGEF domain containing G2 2 2
MIRT691142 HJURP Holliday junction recognition protein 2 2
MIRT691158 APOL6 apolipoprotein L6 2 2
MIRT691288 CENPM centromere protein M 2 2
MIRT691435 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT691749 IKBKG inhibitor of nuclear factor kappa B kinase subunit gamma 2 2
MIRT691833 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT691885 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT691947 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT692047 PAK1IP1 PAK1 interacting protein 1 2 2
MIRT692668 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT692767 NDUFS5 NADH:ubiquinone oxidoreductase subunit S5 2 2
MIRT692859 ZSWIM1 zinc finger SWIM-type containing 1 2 2
MIRT693122 SCNM1 sodium channel modifier 1 2 2
MIRT693514 MOB3A MOB kinase activator 3A 2 2
MIRT693648 ACBD7 acyl-CoA binding domain containing 7 2 2
MIRT693688 MXRA7 matrix remodeling associated 7 2 2
MIRT694078 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT694163 SLC36A2 solute carrier family 36 member 2 2 2
MIRT694262 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT694506 AGBL5 ATP/GTP binding protein like 5 2 2
MIRT694556 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 2 2
MIRT694639 MRI1 methylthioribose-1-phosphate isomerase 1 2 2
MIRT694710 CD300LG CD300 molecule like family member g 2 2
MIRT694753 LLGL1 LLGL1, scribble cell polarity complex component 2 2
MIRT694896 ZNF417 zinc finger protein 417 2 2
MIRT695158 BTD biotinidase 2 2
MIRT695275 CD209 CD209 molecule 2 2
MIRT695434 TCF23 transcription factor 23 2 2
MIRT695817 SRD5A1 steroid 5 alpha-reductase 1 2 2
MIRT696008 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT696345 SLC35D2 solute carrier family 35 member D2 2 2
MIRT696368 EIF2S3 eukaryotic translation initiation factor 2 subunit gamma 2 2
MIRT696533 C3 complement C3 2 2
MIRT696779 DHODH dihydroorotate dehydrogenase (quinone) 2 2
MIRT697075 PSMC4 proteasome 26S subunit, ATPase 4 2 2
MIRT697498 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT697630 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT697931 TXNDC16 thioredoxin domain containing 16 2 2
MIRT697966 TSPYL1 TSPY like 1 2 2
MIRT698237 TMEM216 transmembrane protein 216 2 2
MIRT698643 TES testin LIM domain protein 2 2
MIRT698661 TERF2 telomeric repeat binding factor 2 2 2
MIRT698974 SPAST spastin 2 2
MIRT699047 SOAT1 sterol O-acyltransferase 1 2 2
MIRT699193 SLX4IP SLX4 interacting protein 2 2
MIRT699586 SIKE1 suppressor of IKBKE 1 2 2
MIRT699759 SEPHS1 selenophosphate synthetase 1 2 2
MIRT700350 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT700402 RAB13 RAB13, member RAS oncogene family 2 2
MIRT700418 QDPR quinoid dihydropteridine reductase 2 2
MIRT700546 PTBP2 polypyrimidine tract binding protein 2 2 2
MIRT700774 PLA2G4A phospholipase A2 group IVA 2 2
MIRT700875 PER2 period circadian clock 2 2 2
MIRT700952 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT701077 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT701172 PACS2 phosphofurin acidic cluster sorting protein 2 2 2
MIRT701479 NEK9 NIMA related kinase 9 2 2
MIRT701661 MYH9 myosin heavy chain 9 2 2
MIRT701779 MSL2 MSL complex subunit 2 2 2
MIRT702137 MAPKAPK5 mitogen-activated protein kinase-activated protein kinase 5 2 2
MIRT702494 KIAA1328 KIAA1328 2 2
MIRT703058 GTPBP10 GTP binding protein 10 2 2
MIRT703224 GOLGA3 golgin A3 2 2
MIRT703620 FBXO45 F-box protein 45 2 2
MIRT703657 FAM60A SIN3-HDAC complex associated factor 2 2
MIRT703765 FAM118A family with sequence similarity 118 member A 2 2
MIRT703832 EVI5 ecotropic viral integration site 5 2 2
MIRT703862 ERN1 endoplasmic reticulum to nucleus signaling 1 2 2
MIRT704664 CLCC1 chloride channel CLIC like 1 2 2
MIRT704812 CDC73 cell division cycle 73 2 2
MIRT705608 APAF1 apoptotic peptidase activating factor 1 2 2
MIRT705625 AP1S3 adaptor related protein complex 1 sigma 3 subunit 2 2
MIRT705682 ANKRD40 ankyrin repeat domain 40 2 2
MIRT705813 AKNA AT-hook transcription factor 2 2
MIRT706238 SYT15 synaptotagmin 15 2 2
MIRT706567 EIF2AK2 eukaryotic translation initiation factor 2 alpha kinase 2 2 2
MIRT709657 DFFB DNA fragmentation factor subunit beta 2 2
MIRT710609 ZNF555 zinc finger protein 555 2 2
MIRT711717 IREB2 iron responsive element binding protein 2 2 2
MIRT714122 TMED9 transmembrane p24 trafficking protein 9 2 2
MIRT715204 FKTN fukutin 2 2
MIRT718260 ZDHHC8 zinc finger DHHC-type containing 8 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4419b Fluorouracil 3385 NSC19893 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-4419b Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-4419b Cisplatin + Decitabine resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-mir-4419b Androstenedione+Anastrozole sensitive cell line (MCF-7)

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