miRTarBase - #MIRT465190


—
pre-miRNA Information
pre-miRNA hsa-mir-4742   
Genomic Coordinates chr1: 224398227 - 224398311
Description Homo sapiens miR-4742 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4742-5p
Sequence 1| UCAGGCAAAGGGAUAUUUACAGA |23
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1234293681 4 dbSNP
rs778464201 9 dbSNP
rs758952505 12 dbSNP
rs753463665 16 dbSNP
rs765920862 18 dbSNP
rs1205603801 20 dbSNP
rs756994761 21 dbSNP
Putative Targets

Gene Information
Gene Symbol TRPS1   
Synonyms GC79, LGCR
Description transcriptional repressor GATA binding 1
Transcript NM_014112   
Expression
Putative miRNA Targets on TRPS1
3'UTR of TRPS1
(miRNA target sites are highlighted)		 
>TRPS1|NM_014112|3'UTR
   1 AACCTTAGCACTTAGCACAATTAAATAGAAATAGGTTTTCTTGATGGGAATTCAATAGCTTGTAATGTCTTATGAAGACC
  81 TATTAAAAAAATACTTCATAGAGCCTGCCTTATCCAACATGAAATTCCCTTCTTTTGTTATTCTTTCTTTTGATGAGTAG
 161 GTTACCAAGATTAAAAAGTGAGATAAATGGTCAATGAGAAAGAATGGAAGATGGTAAACAATCACTTTTTAAAACCTGTT
 241 AAGTCAAAACCATCTTGGCTAATATGTACTGGGGAAATAATCCATAAGAGATATCACCAGACTAGAATTAATATATTTAT
 321 AAAGAAAGAGACCAAAACTGTCTAGAATTTGAAAGGGTTTACATATTATTATACTAAAGCAGTACTGGACTGGCCATTGG
 401 ACCATTTGTTCCAAAACCCATAAATTGTTGCCTAAATTTATAATGATCATGAAACCCTAGGCAGAGGAGGAGAAATTGAA
 481 GGTCCAGGGCAATGAAAGAAAAATGGCGCCCTCTCAATTTAGTCTTCTCTCATTGGCCATGTTTCAGATTTTGACCTAGA
 561 AATGCGAGCTGTGGTTAGGCTTGGTTAGAGTGCAGCAAGCAACATGACAGATGGTGGCACGCTGTTTTTACCCAGCCCTG
 641 CCTGTACATACACATGCACACCCTCTCTGATATTTTTGTCCTTTAGATGTTCAAATACTCAGTAGTCCTTTTGTTTGCGG
 721 TTTAGATTCATTTTGTCCACACATGTACCCATTTTAAAAAACAATGTCCTCGATGCTTCTGTAGTGATTTCATTTTAGCC
 801 AGGTATTTCTTTCTTGTGTGTGATGAACCAGTATGGATTTGCTTTTCTAAGCCTCCTGTTGGTTACTAATCTCACTTGGC
 881 ACATTATAACTAAAGGAATCCCCTCAATTCAAAAGCATAGATGGATACAAATGTCAGACCGTGGGTTTAATTTGTTTAGA
 961 ACACATGGCATTTCTTCACAAGGTAACCTGCTGTATTTATTTATTTTCTTTTGGTTAAATATAATTTCCAAACTTTGTGG
1041 TCAGGCAGCGTCTAAGGTTACGTTACCACAGACTGACAGTTGGTATATGTACCAGCCAATCCCTTCATTAAATGTATACA
1121 GATTTAGTTAAGTAGCATTAAATAGGATTCTTAGAAGTATGTCCTCATAGAACTTTTAATACTTAAGGCTTTGTAAAAAC
1201 TATCCATGAAGGGAAAGCTCCTCAGCATAACTGCTCAGGGAAATAGGGCTAAATAACTGAACATTAAATAATTGGTTAAA
1281 GGTGCTGTTAGTCGAGCCTCAATGCTTGCTACAAGGATGTATGTACAAGGACTGACTTTAATAATTTGCATTATATTGTC
1361 CCAACCAGTAGTTTATTTTTTGCCACGGAGATGTAGAAGATATTACAAGCTACTGGATGCACTGTCAGATTAACTTATTT
1441 CATTAAAGAAGTTGGGAGAACAAATAGGAAAAAAAAAACTTATTTTTCTAGTAAATATTAATGTATTACATTTCAAATAA
1521 TGGTGCCTGACATATTGAATAATTATTTTCTACAGTGTACGTATGCAACAAAGATATTCCATCATGCATTAGAGTCAGTT
1601 CTGGCTCTGCCTAGCTGTTTACATTTGCAAATGTAGCAAACAAGGTAATGAAGCAACTATTTCTATTGCAGTAGATATCC
1681 TTTTGTGTGTGTGTGTGTGCATTAAAGTTGTAAACGGTAACATGAAACAAATGAAAGTTCTTGCTATAATGGTATGGAAA
1761 ACAAGAAGGAAATGAAAATATTTTTATGCCTACTTAGGAAAAAAAGGGTAGCACTTATTCATTCCAAGTACTTTTTTTTT
1841 TTTAATTTTTAAGCTCTTAACTCACATTGTTATGCTTAAGATGATAAACATATATCCTCTTTTTATTGCTTTGTCTATGT
1921 TTCATATGAAACATTTCAGAAATTATTTTGATAAGTGTTGCTGGAATCTGCAACGCTGATTTTTTTTTGCATTCTGTAGT
2001 CGCATTTGCACTCCATTTTTACATTAATTCGCAGTTGCTTTGTATCATTGTTTTGTTTGGGTTTTGTTTCTTTTTCACAG
2081 TGCCGGGTCTTCGTTTCTTAAAGTTGGATGGCAGGTAGAGTTCAACCAGTTCGTGACTGTTGTAGCGAATGAAGTTAAAA
2161 AAATGTCTTTCTGATGTTGTGTTGTCATTTTCATTTTTGCATTTTTTTGTTTGCATATTAAAAAAAGAGAAAAGAGAAAG
2241 CAAGAGACAGAAATCAGGACTAAGTCCTCTGCTTCAGTTTCATTGTTAACGGGCCTTATTCTGATCTCACCTGTCGCGTA
2321 GCTCTAATATTCACATAAACTGAAATAAAGAAGTGGAATGAGGAGCTTTGACATTCAAATTATGTGATGTAATTTATCTT
2401 CCTTAGGAATTTTGATGGATGCATCTCAAAATGTATAGCCAGACTTGAGAGGTGACAATTAAAGATCTAAAAAAGAGAGG
2481 AGATTCCCCCAAACAACAATATTTAATTTTCTTAGTAAAAAGAATAACAGAATGCATCGTGGCAATCCTTAAGCAACATT
2561 ATCTATGTGGACTGCTTAAATCAGCAAAACACCAGAAGTTTGGTTAACTTGGGCAATATGACAAGTATTACTTTTTGGGC
2641 AAAACTACTCATTAAGCAATTTCTCTAGTGTGTCGGACACAAATAGGTTCTTTATTTTTGGCATGTATGCCTTTTTATTT
2721 TCATTCAATTTTTTTTTTTTCTCAGACAGACATAGTAGTAACGACTAGCATTGGAAAATACATATCACTATTCTTGGAAT
2801 ATTTATGGTCAGTCTACTTTTTAGTAGAATATTTTTGGATAGCGTTGACACGATAGATCTTATTCCATACTTCTTTATTA
2881 TTGATAATTTTATTTTCATTTTTTGCTTTCATTATTATACATATTTTGGTGGAGAAGAGGTTGGGCTTTTTTGAAAGAGA
2961 CAAAAATTTATTATAACACTAAACACTCCTTTTTTGACATATTAAAGCCTTTATTCCATCTCTCAAGATATATTATAAAA
3041 TTTATTTTTTTAATTTAAGATTTCTGAATTATTTTATCTTAAATTGTGATTTTAAACGAGCTATTATGGTACGGAACTTT
3121 TTTTAATGAGGAATTTCATGATGATTTAGGAATTTTCTCTCTTGGAAAAGGCTTCCCCTGTGATGAAAATGATGTGCCAG
3201 CTAAAATTGTGTGCCATTTAAAAACTGAAAATATTTTAAAATTATTTGTCTATATTCTAAATTGAGCTTTGGATCAAACT
3281 TTAGGCCAGGACCAGCTCATGCGTTCTCATTCTTCCTTTTCTCACTCTTTCTCTCATCACTCACCTCTGTATTCATTCTG
3361 TTGTTTGGGATAGAAAAATCATAAAGAGCCAACCCATCTCAGAACGTTGTGGATTGAGAGAGACACTACATGACTCCAAG
3441 TATATGAGAAAAGGACAGAGCTCTAATTGATAACTCTGTAGTTCAAAAGGAAAAGAGTATGCCCAATTCTCTCTACATGA
3521 CATATTGAGATTTTTTTTAATCAACTTTTAAGATAGTGATGTTCTGTTCTAAACTGTTCTGTTTTAGTGAAGGTAGATTT
3601 TTATAAAACAAGCATGGGGATTCTTTTCTAAGGTAATATTAATGAGAAGGGAAAAAAGTATCTTTAACAGCTCTTTGTTG
3681 AAGCCTGTGGTAGCACATTATGTTTATAATTGCACATGTGCACATAATCTATTATGATCCAATGCAAATACAGCTCCAAA
3761 AATATTAAATGTATATATATTTTAAAATGCCTGAGGAAATACATTTTTCTTAATAAACTGAAGAGTCTCAGTATGGCTAT
3841 TAAAATAATTATTAGCCTCCTGTTGTGTGGCTGCAAAACATCACAAAGTGACCGGTCTTGAGACCTGTGAACTGCTGCCC
3921 TGTTTAGTAAATAAAATTAATGCATTTCTAGAGGGGGAATATCTGCCATCCAGTGGTGGAAATGTGGAGTAAAGAAGCTG
4001 GTGGTCTGCTTCTGTGCTGTATGCCAGCCTTTTGCCTTAAGTTGAGAGGAGGTCAACTTTAGCTACTGTCTTTGGTTTGA
4081 GAGCCATGGCAAAAAAAAAAAAAGAAAAAAAGATCAAGTCGTCTTTGGTGAGCCAGTAAGGTGAAAGCTTGCTGACTGTC
4161 CAAGGCACAAGAGAAAATTGAGGAATTGAAATGCAACCTGAGTATCAAACTAAATATTCTAATCAAAGGTAGGTACTGTT
4241 AGGTGGAATTCTATCAGCAGGCAACTGCAAATGAGAAGAAGATAGAAGGACGCCCGTCGGGACTTTGGAGGGCATTGTTA
4321 TTTTCCCAAAGAAAGACGGCCAAGGGCAGAGGCATGGATTCTTTGCAGAGCACTTCCTTTTGGTTTTTCAGTACTGTTTC
4401 ATAGACAGTGGGCTCACATGTTCCTGATAGTGCTGCAGTTGCTTAGAAAGCATCCCAGTTAATTGCAGTAATTAGAACTT
4481 CTGGAATATGCTAGGGCAGAAGTATGTCAAGTATGTCACATGAAGAAAATGTGAAATTCAAGAGTAATCCACACGTGAGA
4561 AACTAGACAATGTACATTCATGTGTTCTCTTGAAAGGAAAGGGAGAGCTGTAAGCTTCACTCTGTCCTACACCGGAGAAA
4641 AGCAGGAATAACTTTACCGTGGAAATAATGTTTAGCTTTTATCAGAGAAAATTGTCCTTCTAGAGCATAGAGTCCCAAAA
4721 CTCAATTCTGGTTTTCCCCTGTTTTTTTTTTTTTTTTTTTTCCCAACATATAAACTGCAGCATATCACTTTTTCTTTTTG
4801 TGCCTCAGGTTCCTCAGCTGTAAAATTGAAAAATATATGTATTAATAATATTATTAATAATAATAATGGTAATGTAGTAC
4881 TTGTTTGTAAAGCACTTTGAGATCCTTGGTTGAAAGGCACCATAGGAGTGCCAAGTATTATTATGTGGCCAAGGGGGTTA
4961 TTTAAACTGTCAGTTCCCAAAGGCCAGGAAAGGTTGGGGTCATTTTTCTTAAAGACGAGCTGTAAATATCAACTAGGCAG
5041 CCAATAGTGTTGACTATGAAGATGCAAAACTATTACTAGGCTGATAAAATCATAGTTTCTTAATGGCTACCAATAAGGCA
5121 AATATCACAATAATAAACGCCAAATTCCTTAGGGCGGACTATTTGACAACCACATGGAAAACTTTGGGGGAGGCATGAGG
5201 GGGGAACATCTCAAAATGCCAATGTAAAATTTAACTTACAGCAATATTCACCAGCAGAAAATGTCTTTCATATGGAATGA
5281 TTTCATGTTGCTAAGAAAAAGAATTCAATTTGTAGTCCTGATTTGAATACTAGAATGTTGGCTATAATAGTTCTGTTCTT
5361 ACAACACATGAAATTTTTTCGTTTTATTTTATTTTGTTTTCATAGTGCATGTTCATTTCTACTCACAAACATGTTCTTGG
5441 TGTATTTCTTATGCAAACAATCTTCAGGCAGCAAAGATGTCTGTTACATCTAAACTTGAATAATAAAGTTTTACCACCAG
5521 TTACACA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' agACAU-UUAUAGGGAAACGGAcu 5'
            |||| :  | ||:|||||||  
Target 5' gcTGTATGCCAGCCTTTTGCCTta 3'
 4016 - 4039 145.00 -19.50
2 
miRNA  3' agaCAUUUAUAGGGAAACGGACu 5'
             |||:||||||:||||: || 
Target 5' gcaGTAGATATCCTTTTGTGTGt 3'
 1668 - 1690 144.00 -22.20
3 
miRNA  3' agacAUUUAU-AGGGAAACGGACu 5'
              | |:|| |||:||||::|| 
Target 5' atacTCAGTAGTCCTTTTGTTTGc 3'
 695 - 718 139.00 -14.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
361603 339 ClinVar
361584 1844 ClinVar
361581 1984 ClinVar
361567 2538 ClinVar
361563 2741 ClinVar
361562 2755 ClinVar
369687 3539 ClinVar
361534 4603 ClinVar
361524 4742 ClinVar
361520 4762 ClinVar
361517 4851 ClinVar
361510 5304 ClinVar
COSN18733205 15 COSMIC
COSN30150293 22 COSMIC
COSN31604729 23 COSMIC
COSN30130587 28 COSMIC
COSN16298124 37 COSMIC
COSN28857736 45 COSMIC
COSN30141074 49 COSMIC
COSN1358251 55 COSMIC
COSN26506168 59 COSMIC
COSN31613446 64 COSMIC
COSN19749358 72 COSMIC
COSN30118475 80 COSMIC
COSN30122973 82 COSMIC
COSN30504372 84 COSMIC
COSN28869959 85 COSMIC
COSN31506997 85 COSMIC
COSN31574850 89 COSMIC
COSN31606288 147 COSMIC
COSN8518198 252 COSMIC
COSN26585293 283 COSMIC
COSN31547887 385 COSMIC
COSN9592170 411 COSMIC
COSN31556821 565 COSMIC
COSN31540470 718 COSMIC
COSN32062654 813 COSMIC
COSN21677306 816 COSMIC
COSN29262046 1062 COSMIC
COSN19658582 1071 COSMIC
COSN28789410 1071 COSMIC
COSN31606894 1132 COSMIC
COSN24007505 1172 COSMIC
COSN7663903 1233 COSMIC
COSN23077734 1302 COSMIC
COSN31778666 1324 COSMIC
COSN31518569 1387 COSMIC
COSN29531536 1468 COSMIC
COSN17534996 1474 COSMIC
COSN8518197 1525 COSMIC
COSN19657019 1570 COSMIC
COSN19657018 1572 COSMIC
COSN31593849 1576 COSMIC
COSN23105535 1586 COSMIC
COSN31520165 1599 COSMIC
COSN31520710 1663 COSMIC
COSN22898415 1684 COSMIC
COSN29089942 1685 COSMIC
COSN8060414 1715 COSMIC
COSN30545370 1762 COSMIC
COSN15705840 1785 COSMIC
COSN19664667 1844 COSMIC
COSN7663902 1892 COSMIC
COSN30174899 1937 COSMIC
COSN26023216 1960 COSMIC
COSN31536489 1977 COSMIC
COSN20105825 1980 COSMIC
COSN26584581 1981 COSMIC
COSN6908243 2030 COSMIC
COSN31543058 2055 COSMIC
COSN8060413 2202 COSMIC
COSN30542091 2318 COSMIC
COSN26465777 2421 COSMIC
COSN14547575 2422 COSMIC
COSN26678840 2456 COSMIC
COSN5107776 2460 COSMIC
COSN17182170 2476 COSMIC
COSN28834954 2486 COSMIC
COSN20568647 2563 COSMIC
COSN32062532 2637 COSMIC
COSN32064594 2638 COSMIC
COSN30173917 2666 COSMIC
COSN16550594 2728 COSMIC
COSN28935564 2728 COSMIC
COSN19656024 2729 COSMIC
COSN29044505 2729 COSMIC
COSN26639424 2786 COSMIC
COSN31548687 2851 COSMIC
COSN22804628 2871 COSMIC
COSN16844974 2880 COSMIC
COSN32057827 2951 COSMIC
COSN8060412 2985 COSMIC
COSN30360095 3078 COSMIC
COSN30210418 3097 COSMIC
COSN22183835 3191 COSMIC
COSN27261092 3261 COSMIC
COSN22893842 3263 COSMIC
COSN31485700 3286 COSMIC
COSN17686606 3303 COSMIC
COSN6908242 3426 COSMIC
COSN31603054 3454 COSMIC
COSN25237521 3484 COSMIC
COSN8574392 3496 COSMIC
COSN4937342 3534 COSMIC
COSN30538227 3543 COSMIC
COSN31523549 3660 COSMIC
COSN2256354 3663 COSMIC
COSN8574391 3693 COSMIC
COSN6908241 3732 COSMIC
COSN6908240 3787 COSMIC
COSN22723230 3793 COSMIC
COSN31547876 3801 COSMIC
COSN31778665 3873 COSMIC
COSN21773604 3876 COSMIC
COSN20105821 4090 COSMIC
COSN26646386 4104 COSMIC
COSN32209923 4130 COSMIC
COSN9592169 4177 COSMIC
COSN31487230 4182 COSMIC
COSN26584420 4188 COSMIC
COSN6908239 4212 COSMIC
COSN31539637 4216 COSMIC
COSN17288606 4291 COSMIC
COSN31603488 4292 COSMIC
COSN7663901 4337 COSMIC
COSN22839759 4353 COSMIC
COSN6908238 4619 COSMIC
COSN20506795 4740 COSMIC
COSN19330563 4741 COSMIC
COSN27287246 4741 COSMIC
COSN20105820 4742 COSMIC
COSN6908237 4849 COSMIC
COSN20613871 4941 COSMIC
COSN26602973 5049 COSMIC
COSN31568772 5143 COSMIC
COSN31481340 5202 COSMIC
COSN31563316 5290 COSMIC
COSN31482812 5301 COSMIC
COSN5672439 5307 COSMIC
COSN4937341 5386 COSMIC
COSN26567778 5442 COSMIC
COSN32058772 5479 COSMIC
COSN28829665 5498 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs760711774 5 dbSNP
rs772865087 8 dbSNP
rs771915126 16 dbSNP
rs938424254 25 dbSNP
rs761454305 33 dbSNP
rs1038074368 34 dbSNP
rs1314417783 35 dbSNP
rs1356016083 37 dbSNP
rs773932940 43 dbSNP
rs768316812 47 dbSNP
rs1441494554 48 dbSNP
rs748702539 50 dbSNP
rs1440817974 59 dbSNP
rs1351019518 62 dbSNP
rs114484567 73 dbSNP
rs1310026696 77 dbSNP
rs112318934 84 dbSNP
rs559480464 85 dbSNP
rs541561817 89 dbSNP
rs1258582241 92 dbSNP
rs1488167672 92 dbSNP
rs1407757803 93 dbSNP
rs576903339 104 dbSNP
rs147795592 115 dbSNP
rs1441177601 132 dbSNP
rs1023926532 136 dbSNP
rs1392710759 141 dbSNP
rs543179170 143 dbSNP
rs963393981 150 dbSNP
rs923529602 157 dbSNP
rs1014901455 159 dbSNP
rs988301492 167 dbSNP
rs957071764 169 dbSNP
rs925469892 178 dbSNP
rs1399140684 183 dbSNP
rs1296307456 189 dbSNP
rs890510899 193 dbSNP
rs575951848 194 dbSNP
rs1030580400 196 dbSNP
rs190536283 210 dbSNP
rs969499789 214 dbSNP
rs1488753425 216 dbSNP
rs1248336683 220 dbSNP
rs753630575 239 dbSNP
rs763444403 243 dbSNP
rs1286979743 258 dbSNP
rs1023600934 268 dbSNP
rs900336688 269 dbSNP
rs1198248724 274 dbSNP
rs1042983192 276 dbSNP
rs1446141208 278 dbSNP
rs1455632894 284 dbSNP
rs1014018287 286 dbSNP
rs1194555416 290 dbSNP
rs960633494 292 dbSNP
rs1025964769 299 dbSNP
rs1241128187 304 dbSNP
rs1356201014 312 dbSNP
rs1156544374 314 dbSNP
rs1387065467 315 dbSNP
rs1011429697 316 dbSNP
rs1422309602 322 dbSNP
rs1301302263 326 dbSNP
rs1218775038 329 dbSNP
rs891483066 331 dbSNP
rs1303748941 332 dbSNP
rs994127090 335 dbSNP
rs1238445590 338 dbSNP
rs530055629 339 dbSNP
rs898327830 339 dbSNP
rs1038207447 342 dbSNP
rs753344086 351 dbSNP
rs765858879 356 dbSNP
rs1429243853 357 dbSNP
rs928365990 361 dbSNP
rs1006557259 363 dbSNP
rs1044529425 365 dbSNP
rs1179400657 370 dbSNP
rs144236681 375 dbSNP
rs1344918902 378 dbSNP
rs1470384807 380 dbSNP
rs565707766 381 dbSNP
rs746903182 382 dbSNP
rs948228684 387 dbSNP
rs800899 391 dbSNP
rs973666796 392 dbSNP
rs7841238 401 dbSNP
rs1389380600 420 dbSNP
rs907874519 421 dbSNP
rs933667942 430 dbSNP
rs571331846 431 dbSNP
rs1053103686 440 dbSNP
rs935630086 446 dbSNP
rs1184293863 448 dbSNP
rs925438614 458 dbSNP
rs552829695 464 dbSNP
rs1030451258 467 dbSNP
rs1233995414 468 dbSNP
rs969432869 469 dbSNP
rs531083143 472 dbSNP
rs1257429468 476 dbSNP
rs1456498254 478 dbSNP
rs916686314 485 dbSNP
rs56778552 486 dbSNP
rs1251493597 489 dbSNP
rs1438226494 493 dbSNP
rs141938963 498 dbSNP
rs565467764 508 dbSNP
rs559726717 511 dbSNP
rs1165553574 512 dbSNP
rs1422360470 516 dbSNP
rs1011463850 520 dbSNP
rs886062621 522 dbSNP
rs541050310 525 dbSNP
rs768782918 539 dbSNP
rs1209726979 540 dbSNP
rs532483994 551 dbSNP
rs1053202734 565 dbSNP
rs565010164 566 dbSNP
rs1278110853 567 dbSNP
rs1316200346 578 dbSNP
rs1229670092 584 dbSNP
rs1006689902 590 dbSNP
rs1252142490 604 dbSNP
rs1344524154 607 dbSNP
rs906848230 610 dbSNP
rs889507243 611 dbSNP
rs79410197 616 dbSNP
rs997972074 617 dbSNP
rs779999597 620 dbSNP
rs112765763 621 dbSNP
rs942262055 625 dbSNP
rs1402182545 631 dbSNP
rs1373304499 637 dbSNP
rs1465175532 649 dbSNP
rs935542445 651 dbSNP
rs984102361 661 dbSNP
rs554457209 662 dbSNP
rs904111823 668 dbSNP
rs753393164 684 dbSNP
rs1360447850 686 dbSNP
rs923542036 698 dbSNP
rs746096373 704 dbSNP
rs1466239756 707 dbSNP
rs781522441 708 dbSNP
rs964738723 714 dbSNP
rs1409267062 715 dbSNP
rs370751437 718 dbSNP
rs572233963 719 dbSNP
rs757438574 720 dbSNP
rs751987217 726 dbSNP
rs956065914 730 dbSNP
rs779389679 732 dbSNP
rs553747586 737 dbSNP
rs376319733 747 dbSNP
rs1003184174 748 dbSNP
rs1432078794 766 dbSNP
rs906884574 771 dbSNP
rs972768757 772 dbSNP
rs1455008711 780 dbSNP
rs962572249 781 dbSNP
rs1158370267 784 dbSNP
rs1343966765 788 dbSNP
rs1455864751 793 dbSNP
rs538614142 794 dbSNP
rs1483735178 801 dbSNP
rs778096432 803 dbSNP
rs953864666 806 dbSNP
rs758918317 807 dbSNP
rs1390166119 808 dbSNP
rs1029530945 826 dbSNP
rs998340756 831 dbSNP
rs898208587 833 dbSNP
rs1257830035 838 dbSNP
rs1305934903 850 dbSNP
rs1038122490 854 dbSNP
rs1305944694 862 dbSNP
rs1314906477 863 dbSNP
rs942209565 865 dbSNP
rs891545589 870 dbSNP
rs1261219001 872 dbSNP
rs1031719618 873 dbSNP
rs753182835 883 dbSNP
rs933544358 884 dbSNP
rs923310302 899 dbSNP
rs1177618293 904 dbSNP
rs999882298 907 dbSNP
rs1421225013 917 dbSNP
rs943462282 925 dbSNP
rs765839016 940 dbSNP
rs1368358840 945 dbSNP
rs1459960521 959 dbSNP
rs1259220658 960 dbSNP
rs1206131983 962 dbSNP
rs914700225 969 dbSNP
rs36098863 978 dbSNP
rs1395497359 981 dbSNP
rs990188082 982 dbSNP
rs955921197 987 dbSNP
rs774582126 994 dbSNP
rs1225229207 998 dbSNP
rs1307659866 1013 dbSNP
rs1334011541 1034 dbSNP
rs1333067554 1039 dbSNP
rs904214678 1044 dbSNP
rs1312532535 1049 dbSNP
rs185730794 1050 dbSNP
rs1230784212 1052 dbSNP
rs948319249 1056 dbSNP
rs1396244190 1061 dbSNP
rs895303576 1062 dbSNP
rs1256083572 1066 dbSNP
rs1474474427 1067 dbSNP
rs981392991 1077 dbSNP
rs1418740211 1078 dbSNP
rs971685341 1085 dbSNP
rs1168655493 1086 dbSNP
rs1022639612 1087 dbSNP
rs976287703 1091 dbSNP
rs1012627628 1096 dbSNP
rs556254960 1100 dbSNP
rs1016720968 1105 dbSNP
rs1400432862 1106 dbSNP
rs1056640747 1108 dbSNP
rs1172649461 1117 dbSNP
rs886062620 1121 dbSNP
rs1004352716 1131 dbSNP
rs939399435 1132 dbSNP
rs1459826631 1135 dbSNP
rs180847615 1143 dbSNP
rs973119698 1150 dbSNP
rs145622918 1157 dbSNP
rs933597388 1168 dbSNP
rs1258467247 1169 dbSNP
rs1308833805 1174 dbSNP
rs775545322 1178 dbSNP
rs1280151003 1184 dbSNP
rs902067342 1188 dbSNP
rs1190760838 1192 dbSNP
rs555103975 1195 dbSNP
rs909912188 1196 dbSNP
rs767321434 1202 dbSNP
rs1184809735 1203 dbSNP
rs1421936487 1205 dbSNP
rs1410684573 1206 dbSNP
rs985334172 1216 dbSNP
rs1039260707 1220 dbSNP
rs954002209 1224 dbSNP
rs922389757 1227 dbSNP
rs990211046 1240 dbSNP
rs1355955297 1248 dbSNP
rs374518396 1253 dbSNP
rs1267830267 1262 dbSNP
rs1363449246 1263 dbSNP
rs1246046457 1264 dbSNP
rs1323903561 1266 dbSNP
rs201433800 1266 dbSNP
rs934710463 1267 dbSNP
rs530457790 1282 dbSNP
rs768063500 1298 dbSNP
rs1304365235 1310 dbSNP
rs371738229 1314 dbSNP
rs955953508 1315 dbSNP
rs1376921090 1323 dbSNP
rs1332864798 1329 dbSNP
rs1281698959 1337 dbSNP
rs924474649 1347 dbSNP
rs1213745572 1358 dbSNP
rs761556745 1359 dbSNP
rs981642204 1360 dbSNP
rs1031401601 1364 dbSNP
rs1475767948 1365 dbSNP
rs1193283111 1368 dbSNP
rs999976675 1376 dbSNP
rs1393456500 1385 dbSNP
rs971251727 1386 dbSNP
rs566206829 1387 dbSNP
rs139362715 1394 dbSNP
rs1400113745 1405 dbSNP
rs532325847 1411 dbSNP
rs1316115454 1416 dbSNP
rs763927076 1423 dbSNP
rs1012467664 1424 dbSNP
rs1430782226 1442 dbSNP
rs1016588169 1444 dbSNP
rs1236979371 1448 dbSNP
rs1304545459 1453 dbSNP
rs1459212136 1458 dbSNP
rs1350408469 1460 dbSNP
rs1361851757 1461 dbSNP
rs1157017834 1465 dbSNP
rs1439375786 1467 dbSNP
rs1380994876 1468 dbSNP
rs75910015 1469 dbSNP
rs565045046 1475 dbSNP
rs1057007827 1477 dbSNP
rs1003730745 1478 dbSNP
rs1026487895 1479 dbSNP
rs951171035 1479 dbSNP
rs998134737 1479 dbSNP
rs1180630512 1480 dbSNP
rs1469417189 1484 dbSNP
rs763013243 1501 dbSNP
rs902013594 1507 dbSNP
rs549900706 1508 dbSNP
rs1324573050 1510 dbSNP
rs1391848979 1512 dbSNP
rs941480812 1533 dbSNP
rs1442739821 1542 dbSNP
rs1039291958 1549 dbSNP
rs909882849 1553 dbSNP
rs1489633072 1556 dbSNP
rs775447429 1560 dbSNP
rs1259349390 1561 dbSNP
rs1351950747 1563 dbSNP
rs1215430276 1581 dbSNP
rs1271421113 1584 dbSNP
rs1354060290 1585 dbSNP
rs1214606289 1614 dbSNP
rs893151137 1641 dbSNP
rs932526391 1647 dbSNP
rs1179338209 1648 dbSNP
rs1231508299 1654 dbSNP
rs367557060 1664 dbSNP
rs922557196 1665 dbSNP
rs977099244 1670 dbSNP
rs531688586 1672 dbSNP
rs955887104 1675 dbSNP
rs1462542364 1678 dbSNP
rs934762340 1683 dbSNP
rs1301809643 1685 dbSNP
rs924474235 1691 dbSNP
rs978506165 1693 dbSNP
rs1045807509 1696 dbSNP
rs140046364 1700 dbSNP
rs767728148 1700 dbSNP
rs949950953 1700 dbSNP
rs1388457889 1715 dbSNP
rs968460685 1722 dbSNP
rs1297425046 1728 dbSNP
rs1022606650 1733 dbSNP
rs1361466433 1746 dbSNP
rs1233932893 1749 dbSNP
rs1250993839 1752 dbSNP
rs1012603071 1754 dbSNP
rs1160703555 1759 dbSNP
rs959868362 1765 dbSNP
rs1035258416 1767 dbSNP
rs1337631947 1769 dbSNP
rs1477060150 1775 dbSNP
rs1377146625 1779 dbSNP
rs561162451 1786 dbSNP
rs1200129308 1789 dbSNP
rs962592011 1790 dbSNP
rs1435483200 1791 dbSNP
rs1260087436 1793 dbSNP
rs1216398931 1794 dbSNP
rs1488402483 1795 dbSNP
rs1287662281 1797 dbSNP
rs1208280890 1798 dbSNP
rs909556477 1799 dbSNP
rs1483254980 1800 dbSNP
rs1187201622 1806 dbSNP
rs1255264687 1806 dbSNP
rs543374043 1806 dbSNP
rs982818066 1808 dbSNP
rs576980342 1809 dbSNP
rs1029861696 1818 dbSNP
rs1460209350 1825 dbSNP
rs1169271009 1828 dbSNP
rs572328715 1828 dbSNP
rs560144757 1842 dbSNP
rs77662114 1843 dbSNP
rs1229969482 1844 dbSNP
rs1324760536 1844 dbSNP
rs1357861747 1844 dbSNP
rs886062619 1844 dbSNP
rs1277307018 1845 dbSNP
rs1017697176 1846 dbSNP
rs1278113053 1854 dbSNP
rs1486571813 1855 dbSNP
rs1200957177 1856 dbSNP
rs1260500542 1861 dbSNP
rs897310612 1865 dbSNP
rs577754704 1866 dbSNP
rs1390361372 1868 dbSNP
rs1342179015 1869 dbSNP
rs1300202383 1889 dbSNP
rs1005553072 1890 dbSNP
rs1467064315 1892 dbSNP
rs1288785998 1896 dbSNP
rs888537991 1897 dbSNP
rs1321489174 1900 dbSNP
rs1049686808 1905 dbSNP
rs1173305980 1905 dbSNP
rs932686868 1913 dbSNP
rs1422171766 1923 dbSNP
rs1313725690 1925 dbSNP
rs1193604975 1932 dbSNP
rs1260040735 1934 dbSNP
rs556192328 1935 dbSNP
rs1478313647 1937 dbSNP
rs1265808461 1939 dbSNP
rs903170133 1940 dbSNP
rs1184938351 1944 dbSNP
rs1441552647 1956 dbSNP
rs574359276 1969 dbSNP
rs1046257007 1971 dbSNP
rs1256204443 1974 dbSNP
rs1467701704 1975 dbSNP
rs922624504 1979 dbSNP
rs33974756 1980 dbSNP
rs11401905 1981 dbSNP
rs79548923 1981 dbSNP
rs886062618 1984 dbSNP
rs934613213 1986 dbSNP
rs1257300496 1988 dbSNP
rs1393816748 1989 dbSNP
rs1439069414 1989 dbSNP
rs374198740 1989 dbSNP
rs1369527308 1993 dbSNP
rs1055603726 1998 dbSNP
rs150864640 2001 dbSNP
rs199916540 2011 dbSNP
rs978601389 2011 dbSNP
rs909831491 2016 dbSNP
rs1319667467 2023 dbSNP
rs947093575 2031 dbSNP
rs1254463413 2032 dbSNP
rs915683293 2039 dbSNP
rs1291272087 2047 dbSNP
rs951152723 2066 dbSNP
rs1446088754 2074 dbSNP
rs1489021885 2081 dbSNP
rs991259243 2084 dbSNP
rs922276005 2085 dbSNP
rs117785482 2086 dbSNP
rs76370352 2092 dbSNP
rs547643442 2093 dbSNP
rs1398243635 2104 dbSNP
rs982380828 2105 dbSNP
rs188119330 2109 dbSNP
rs571351801 2110 dbSNP
rs1005687252 2117 dbSNP
rs1466654267 2120 dbSNP
rs888507071 2132 dbSNP
rs752483401 2133 dbSNP
rs1297336117 2135 dbSNP
rs957526615 2140 dbSNP
rs1411656395 2143 dbSNP
rs1033707164 2146 dbSNP
rs1354322737 2149 dbSNP
rs572049851 2159 dbSNP
rs1230868377 2164 dbSNP
rs1161865090 2165 dbSNP
rs1291613700 2171 dbSNP
rs1456525431 2176 dbSNP
rs549740803 2191 dbSNP
rs1203363771 2192 dbSNP
rs531850270 2199 dbSNP
rs1189225833 2200 dbSNP
rs1484224778 2201 dbSNP
rs1183600122 2217 dbSNP
rs1456022484 2218 dbSNP
rs1041445925 2225 dbSNP
rs1257374248 2227 dbSNP
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rs1237048677 2228 dbSNP
rs1190075423 2229 dbSNP
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rs1199178974 2232 dbSNP
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rs1024281568 2240 dbSNP
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rs1227585288 2243 dbSNP
rs558307702 2248 dbSNP
rs1426622379 2249 dbSNP
rs1014355729 2250 dbSNP
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rs543751321 2285 dbSNP
rs371611414 2290 dbSNP
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rs1206264723 2299 dbSNP
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rs922267117 2350 dbSNP
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rs79338232 2417 dbSNP
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rs1220787027 2444 dbSNP
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rs1250134872 2471 dbSNP
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rs1156243717 2500 dbSNP
rs1399622356 2500 dbSNP
rs1033157710 2502 dbSNP
rs573700273 2522 dbSNP
rs199769413 2538 dbSNP
rs570702506 2538 dbSNP
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rs1350499202 2560 dbSNP
rs1222151458 2579 dbSNP
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rs999283103 2611 dbSNP
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rs1014304800 2618 dbSNP
rs1251323829 2619 dbSNP
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rs1200651330 2644 dbSNP
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rs1240903353 2652 dbSNP
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rs1042984220 2668 dbSNP
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rs553939430 2675 dbSNP
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rs888297438 2679 dbSNP
rs779524402 2687 dbSNP
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rs901127651 2694 dbSNP
rs1417448475 2700 dbSNP
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rs1661222 2763 dbSNP
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rs1447998052 3874 dbSNP
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rs1404435257 3909 dbSNP
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rs951876018 4023 dbSNP
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rs1283391844 4060 dbSNP
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rs1262040865 4085 dbSNP
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rs1208598297 4091 dbSNP
rs1049006128 4095 dbSNP
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rs1043803064 4520 dbSNP
rs930531761 4543 dbSNP
rs550727005 4555 dbSNP
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rs1341248558 4624 dbSNP
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rs71530807 4700 dbSNP
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rs1193508236 4748 dbSNP
rs1274476911 4748 dbSNP
rs1237453311 4749 dbSNP
rs1438111786 4749 dbSNP
rs1205141868 4750 dbSNP
rs1446771900 4750 dbSNP
rs1334914415 4751 dbSNP
rs73705184 4751 dbSNP
rs1267976798 4752 dbSNP
rs891340789 4752 dbSNP
rs1199631166 4754 dbSNP
rs1315658122 4754 dbSNP
rs1028532639 4755 dbSNP
rs1287542318 4755 dbSNP
rs1208285299 4756 dbSNP
rs1359047325 4757 dbSNP
rs1292566428 4758 dbSNP
rs1248208175 4759 dbSNP
rs796434771 4759 dbSNP
rs1374764908 4760 dbSNP
rs1491537204 4761 dbSNP
rs201540065 4761 dbSNP
rs1174554697 4762 dbSNP
rs1195930397 4762 dbSNP
rs1373744900 4762 dbSNP
rs1408494291 4762 dbSNP
rs1470416533 4762 dbSNP
rs1477718252 4762 dbSNP
rs1490746861 4762 dbSNP
rs755990611 4762 dbSNP
rs775333731 4762 dbSNP
rs776420320 4762 dbSNP
rs886062602 4762 dbSNP
rs1443630499 4765 dbSNP
rs1346824179 4766 dbSNP
rs1405208100 4768 dbSNP
rs1305806074 4771 dbSNP
rs150360796 4772 dbSNP
rs997281630 4776 dbSNP
rs1359435895 4782 dbSNP
rs1220861116 4788 dbSNP
rs1404370929 4794 dbSNP
rs865823402 4800 dbSNP
rs1002228851 4806 dbSNP
rs906031101 4813 dbSNP
rs231153 4817 dbSNP
rs540639554 4835 dbSNP
rs1421095216 4836 dbSNP
rs573314428 4837 dbSNP
rs903832687 4847 dbSNP
rs1044215201 4851 dbSNP
rs775143556 4851 dbSNP
rs945450341 4853 dbSNP
rs558180445 4856 dbSNP
rs1417247591 4857 dbSNP
rs1424674173 4857 dbSNP
rs1379171606 4858 dbSNP
rs1177700555 4861 dbSNP
rs892311520 4870 dbSNP
rs1024898501 4876 dbSNP
rs1014261247 4883 dbSNP
rs1244448730 4891 dbSNP
rs886536837 4909 dbSNP
rs939164568 4913 dbSNP
rs1047695472 4917 dbSNP
rs1203834904 4920 dbSNP
rs539963681 4925 dbSNP
rs980671562 4928 dbSNP
rs1177977100 4933 dbSNP
rs1251003480 4935 dbSNP
rs575791015 4935 dbSNP
rs141250165 4937 dbSNP
rs1181683807 4945 dbSNP
rs1386956997 4946 dbSNP
rs1445158123 4947 dbSNP
rs1038942149 4955 dbSNP
rs1352225375 4960 dbSNP
rs972238499 4965 dbSNP
rs943319465 4967 dbSNP
rs750190616 4971 dbSNP
rs74858332 4973 dbSNP
rs987724274 4977 dbSNP
rs1450823994 4984 dbSNP
rs986971404 4985 dbSNP
rs1384270483 4993 dbSNP
rs568275420 4994 dbSNP
rs546916145 5016 dbSNP
rs570667835 5017 dbSNP
rs1205533142 5026 dbSNP
rs1436157647 5032 dbSNP
rs989259314 5047 dbSNP
rs1323253773 5049 dbSNP
rs957685477 5057 dbSNP
rs1460719001 5058 dbSNP
rs1201602430 5061 dbSNP
rs1244737307 5076 dbSNP
rs534603174 5096 dbSNP
rs1473105993 5099 dbSNP
rs1185834491 5105 dbSNP
rs570144734 5117 dbSNP
rs1416795285 5125 dbSNP
rs757772628 5127 dbSNP
rs1170712188 5138 dbSNP
rs551741265 5139 dbSNP
rs530536093 5142 dbSNP
rs563369741 5148 dbSNP
rs1339151845 5149 dbSNP
rs970725997 5150 dbSNP
rs138753298 5155 dbSNP
rs1024445418 5156 dbSNP
rs145841391 5162 dbSNP
rs1014392029 5166 dbSNP
rs1215182515 5167 dbSNP
rs1282716272 5175 dbSNP
rs1321761395 5180 dbSNP
rs1359347305 5182 dbSNP
rs1159249231 5186 dbSNP
rs903863914 5187 dbSNP
rs1264822108 5195 dbSNP
rs562132571 5199 dbSNP
rs1240215670 5201 dbSNP
rs1486568358 5205 dbSNP
rs1010075659 5206 dbSNP
rs1026342461 5212 dbSNP
rs994914569 5217 dbSNP
rs1178087385 5218 dbSNP
rs1430469019 5219 dbSNP
rs1201850527 5222 dbSNP
rs899161357 5223 dbSNP
rs540973740 5234 dbSNP
rs117166324 5238 dbSNP
rs564503364 5249 dbSNP
rs1343691098 5250 dbSNP
rs1407015485 5251 dbSNP
rs546182400 5264 dbSNP
rs890386943 5273 dbSNP
rs905013630 5291 dbSNP
rs1281868871 5303 dbSNP
rs564851438 5304 dbSNP
rs1217221057 5310 dbSNP
rs1223455492 5313 dbSNP
rs575669844 5319 dbSNP
rs1489616807 5322 dbSNP
rs749593830 5323 dbSNP
rs1285661795 5337 dbSNP
rs1246873544 5340 dbSNP
rs1216382508 5341 dbSNP
rs945180054 5347 dbSNP
rs557387204 5352 dbSNP
rs1469300142 5362 dbSNP
rs879688990 5371 dbSNP
rs1289114542 5374 dbSNP
rs374819663 5380 dbSNP
rs1410584353 5381 dbSNP
rs186559093 5386 dbSNP
rs1163447603 5391 dbSNP
rs1356941033 5396 dbSNP
rs971721097 5396 dbSNP
rs940351283 5406 dbSNP
rs1335457951 5409 dbSNP
rs936422952 5418 dbSNP
rs987171019 5419 dbSNP
rs1375193854 5421 dbSNP
rs1240829356 5424 dbSNP
rs545147903 5426 dbSNP
rs1356666201 5442 dbSNP
rs1661215 5448 dbSNP
rs1224151831 5460 dbSNP
rs980861147 5466 dbSNP
rs970310280 5471 dbSNP
rs552730781 5479 dbSNP
rs993067291 5480 dbSNP
rs1201973308 5502 dbSNP
rs1419024024 5505 dbSNP
rs1187334897 5513 dbSNP
rs1234982010 5515 dbSNP
rs1440656136 5516 dbSNP
rs1183521252 5517 dbSNP
rs950875992 5525 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' agacaUUUAUAGGGAAACGGACu 5'
               ||||| :    |||||| 
Target 5' auuucAAAUAAUGG--UGCCUG- 3'
 		18 - 37
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_014112 | 3UTR | UAAAAUGCCUGAGGAAAUACAUUUUUCUUAAUAAACUGAAGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_014112 | 3UTR | UAUAUAUUUUAAAAUGCCUGAGGAAAUACAUUUUUCUUAAUAAACUGAAGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_014112 | 3UTR | UGCCUGAGGAAAUACAUUUUUCUUAAUAAACUGAAGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_014112 | 3UTR | UGCCUGAGGAAAUACAUUUUUCUUAAUAAACUGAAGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_014112 | 3UTR | UAUUUUAAAAUGCCUGAGGAAAUACAUUUUUCUUAAUAAACUGAAGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000395715.3 | 3UTR | AAAUAUUAAUGUAUUACAUUUCAAAUAAUGGUGCCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
70 hsa-miR-4742-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT065632 CLIC4 chloride intracellular channel 4 2 4
MIRT068170 TXLNA taxilin alpha 2 2
MIRT119024 TSN translin 2 2
MIRT165212 GRAMD3 GRAM domain containing 2B 2 2
MIRT175254 PSAT1 phosphoserine aminotransferase 1 2 4
MIRT213228 REST RE1 silencing transcription factor 2 6
MIRT296337 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT316776 FOXC1 forkhead box C1 2 2
MIRT453943 XRCC6 X-ray repair cross complementing 6 2 6
MIRT454599 RPL13A ribosomal protein L13a 2 2
MIRT458485 RMI1 RecQ mediated genome instability 1 2 6
MIRT458650 SGPP2 sphingosine-1-phosphate phosphatase 2 2 2
MIRT459240 ADRBK1 G protein-coupled receptor kinase 2 2 2
MIRT461008 SYT7 synaptotagmin 7 2 2
MIRT462026 RIF1 replication timing regulatory factor 1 2 2
MIRT462103 TMEM214 transmembrane protein 214 2 2
MIRT463255 ZIC5 Zic family member 5 2 4
MIRT465190 TRPS1 transcriptional repressor GATA binding 1 2 2
MIRT470507 PPP1R11 protein phosphatase 1 regulatory inhibitor subunit 11 2 2
MIRT472356 TSPAN1 tetraspanin 1 2 2
MIRT473260 MIDN midnolin 2 2
MIRT477527 EIF4G2 eukaryotic translation initiation factor 4 gamma 2 2 4
MIRT485182 PTP4A1 protein tyrosine phosphatase type IVA, member 1 2 4
MIRT486461 MDM2 MDM2 proto-oncogene 2 2
MIRT492760 PER1 period circadian clock 1 2 8
MIRT496703 TRIM39 tripartite motif containing 39 2 2
MIRT497227 MORC2 MORC family CW-type zinc finger 2 2 2
MIRT499582 INTU inturned planar cell polarity protein 2 4
MIRT504081 C9orf40 chromosome 9 open reading frame 40 2 6
MIRT505484 SRSF2 serine and arginine rich splicing factor 2 2 2
MIRT513255 FBXO17 F-box protein 17 2 2
MIRT525061 FRK fyn related Src family tyrosine kinase 2 2
MIRT528798 RAB32 RAB32, member RAS oncogene family 2 2
MIRT534357 SFT2D2 SFT2 domain containing 2 2 2
MIRT538731 CAPN1 calpain 1 2 2
MIRT550792 WARS2 tryptophanyl tRNA synthetase 2, mitochondrial 2 2
MIRT553994 SRPR SRP receptor alpha subunit 2 4
MIRT568102 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT570107 SLC18B1 solute carrier family 18 member B1 2 2
MIRT570823 RPL7L1 ribosomal protein L7 like 1 2 2
MIRT572004 HMGB1 high mobility group box 1 2 2
MIRT572352 PCYT2 phosphate cytidylyltransferase 2, ethanolamine 2 2
MIRT609716 TMEM132C transmembrane protein 132C 2 2
MIRT613982 LRRC40 leucine rich repeat containing 40 2 2
MIRT620740 CCL16 C-C motif chemokine ligand 16 2 2
MIRT625074 C15orf41 chromosome 15 open reading frame 41 2 4
MIRT627941 NNT nicotinamide nucleotide transhydrogenase 2 2
MIRT629941 IGSF6 immunoglobulin superfamily member 6 2 2
MIRT633396 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT635846 ZNF264 zinc finger protein 264 2 2
MIRT638086 ZNF652 zinc finger protein 652 2 2
MIRT643996 TCHP trichoplein keratin filament binding 2 2
MIRT660020 C1GALT1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 2 2
MIRT660161 BRCC3 BRCA1/BRCA2-containing complex subunit 3 2 2
MIRT668887 CSRP1 cysteine and glycine rich protein 1 2 2
MIRT676729 METTL14 methyltransferase like 14 2 2
MIRT677210 MURC caveolae associated protein 4 2 2
MIRT685949 PTGIS prostaglandin I2 synthase 2 2
MIRT687816 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT689900 SOD2 superoxide dismutase 2 2 2
MIRT698214 TMEM248 transmembrane protein 248 2 2
MIRT698279 TMEM2 transmembrane protein 2 2 2
MIRT698758 STK4 serine/threonine kinase 4 2 2
MIRT698789 STK38 serine/threonine kinase 38 2 2
MIRT703152 GPR137C G protein-coupled receptor 137C 2 2
MIRT704408 CTPS1 CTP synthase 1 2 2
MIRT705067 C4orf32 family with sequence similarity 241 member A 2 2
MIRT710201 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 2 2
MIRT714495 HSPA4 heat shock protein family A (Hsp70) member 4 2 2
MIRT720082 TNRC6B trinucleotide repeat containing 6B 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4742-5p Imatinib 5291 NSC743414 approved sensitive High Chronic Myelogenous Leukemia tissue
hsa-miR-4742-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-4742-5p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-4742-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-4742-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-4742-5p Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-miR-4742-5p Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-miR-4742-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-4742-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

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