miRTarBase - #MIRT465200


—
pre-miRNA Information
pre-miRNA hsa-mir-4282   
Genomic Coordinates chr6: 72967687 - 72967753
Description Homo sapiens miR-4282 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4282
Sequence 40| UAAAAUUUGCAUCCAGGA |57
Evidence Experimental
Experiments SOLiD
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN32074657 13 COSMIC
COSN6331413 18 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1195771339 5 dbSNP
rs755058572 6 dbSNP
rs1245753664 11 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TROVE2   
Synonyms RO60, RORNP, SSA2
Description TROVE domain family member 2
Transcript NM_001173524   
Other Transcripts NM_001042369 , NM_001042370 , NM_001173525 , NM_004600   
Expression
Putative miRNA Targets on TROVE2
3'UTR of TROVE2
(miRNA target sites are highlighted)		 
>TROVE2|NM_001173524|3'UTR
   1 CCATAAGCAGCAGCACGATCCAGAGATCCATTGCCATCAGTGATCTCACTAAAAATATACAGCTACTTCCCAGCTAATCT
  81 CCACCCAATGAATGATGATGGTATAGTATGTGCATAATGGAAAGTTACCTTACTGAAAAAAAAAAAAGAAGGAAAAATAA
 161 GATGGGCCCAAAGGTCTATCTACTAAACTAGCTCTTGGGGAAATAGCTTCAGGATACTGTAGTTTCCTCTATCTAATAGA
 241 GAACTTTTTGTTAACAGACACTGTAAAATAGTTTTGCTTTGTTGAATAATACGTGTGTACCTAAAAGAGGTAAGAGCAAA
 321 AAGTGTAATTCCACATCATGTTACTTGAGAAGTGCTTAACGTTTTCTTAAATGTTTTCATTGGGAAAGGACAGCTTTGAT
 401 AATGTCCAAATACTCTGAAATGCACTAGACCATATAACTGTGATGAAATATGAAACTCATCTGTAAACTTTTATACCAAG
 481 GGGGTAAAAAAAAAAACTAAGGCATTTGATTAAATTATGAATGAGTTTTACAAATTCCTTTCAGAGTTTTACTAAGATCA
 561 CACAAATAACAGCTTTCTTATTCAGTGAAAAAGATATTTTATTTCTGATGTTTTATTTGCACTTGTGGAATATGTTACCA
 641 TTAATCAGAAACATCATGGCAACCCCTAAGAATAGACTAAGTTTGTGTTGGCTGAGGGATTCTATTTGGTTTGCTTTTTT
 721 TTTTTTGCTTTGTTATATTTTATTGCTACAAGGGGTGTGACTTGATAATGATTTCCTCTGAATTATAATAACATAGCCAG
 801 ATGTAGTCTCACACTGTTTTTCATACTCTTAAGTGTAAATAATATAAAATGTTTCAAGCGCTTAACTCCCCCTCATTCAC
 881 AAAGTATAACAATTAAAATCTCAACTATAACCAGTTTAGCTTTTTCCTTACTTTTAAAATAAAATTTTTTACTTTTAACT
 961 ATTTTTTTAGTTAATATTTTTAAAAGTATACATGTCAATGGCCTCTTTGTCCATTATTCATTTTGTGGCAAAATATTCTT
1041 CTTTGATAGTGTAAACAAATAATAAAGCAATCTAGGTCCTTTAGGTTTGAAAGGCAATTTTTGAGTAGCATATTACCAGC
1121 TAGCCAGTCACTAGGAATTTTTTTCAGTATTATTTGTATGTATTAAACTTTTCATTACACTAAAGTGCATTATTTTATTG
1201 AGCAAGTATCCTTCATTGTGAGGTTTAACATTAAAGCAATCTGTTGAAATGCCAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' aggaccuacgUUUAAAAu 5'
                    :|:|||| 
Target 5' attcctttcaGAGTTTTa 3'
 534 - 551 108.00 -5.10
2 
miRNA  3' agGAC-CUACGUUUAAAau 5'
            ||| |||| |||| |  
Target 5' aaCTGTGATG-AAATATga 3'
 436 - 453 107.00 -6.16
3 
miRNA  3' aggaccuacguuUAAAAu 5'
                      ||||| 
Target 5' ctaaagtgcattATTTTa 3'
 1180 - 1197 100.00 -5.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN5735811 12 COSMIC
COSN30451798 21 COSMIC
COSN31561681 29 COSMIC
COSN4892408 33 COSMIC
COSN30648020 35 COSMIC
COSN5735812 39 COSMIC
COSN30184171 41 COSMIC
COSN9054982 42 COSMIC
COSN31566763 70 COSMIC
COSN30159194 98 COSMIC
COSN30178205 106 COSMIC
COSN20045865 146 COSMIC
COSN1095094 148 COSMIC
COSN26632739 153 COSMIC
COSN31488688 162 COSMIC
COSN30111959 242 COSMIC
COSN31521047 246 COSMIC
COSN20090424 273 COSMIC
COSN31523189 293 COSMIC
COSN17153288 294 COSMIC
COSN16130510 325 COSMIC
COSN31585734 373 COSMIC
COSN30687975 421 COSMIC
COSN1095095 497 COSMIC
COSN7194059 520 COSMIC
COSN23419833 607 COSMIC
COSN28756727 625 COSMIC
COSN20095692 727 COSMIC
COSN17182248 1188 COSMIC
COSN14906751 1824 COSMIC
COSN29418614 1882 COSMIC
COSN7194060 2379 COSMIC
COSN23095571 2622 COSMIC
COSN6434555 2800 COSMIC
COSN6016269 2879 COSMIC
COSN17061364 2917 COSMIC
COSN6016270 2932 COSMIC
COSN8414850 2966 COSMIC
COSN27256346 3029 COSMIC
COSN15259012 3189 COSMIC
COSN27503034 3300 COSMIC
COSN8325672 3536 COSMIC
COSN20810683 3892 COSMIC
COSN25271357 4040 COSMIC
COSN7194061 4616 COSMIC
COSN30443307 4627 COSMIC
COSN1423172 4672 COSMIC
COSN19573770 4690 COSMIC
COSN24728585 4911 COSMIC
COSN21165619 5332 COSMIC
COSN16382738 5457 COSMIC
COSN6016271 5857 COSMIC
COSN7194062 5861 COSMIC
COSN19308628 5978 COSMIC
COSN6523374 6106 COSMIC
rs10737620 4111 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1339738202 2 dbSNP
rs1216791062 3 dbSNP
rs747598959 4 dbSNP
rs367696749 14 dbSNP
rs773043987 17 dbSNP
rs1276812710 18 dbSNP
rs371826009 21 dbSNP
rs776843853 25 dbSNP
rs1250316527 27 dbSNP
rs771505068 28 dbSNP
rs777832621 28 dbSNP
rs760100306 29 dbSNP
rs765665365 30 dbSNP
rs752805130 32 dbSNP
rs762971571 40 dbSNP
rs1430397156 41 dbSNP
rs764137144 43 dbSNP
rs376801545 45 dbSNP
rs757417193 48 dbSNP
rs1402140636 50 dbSNP
rs532079502 59 dbSNP
rs146182630 61 dbSNP
rs571828908 66 dbSNP
rs796070915 70 dbSNP
rs1426569943 77 dbSNP
rs1366438911 87 dbSNP
rs749701330 89 dbSNP
rs1422970947 96 dbSNP
rs920971036 100 dbSNP
rs1183692133 105 dbSNP
rs937423966 111 dbSNP
rs953686330 114 dbSNP
rs577625933 122 dbSNP
rs1249674748 126 dbSNP
rs549404223 136 dbSNP
rs78476132 136 dbSNP
rs879076362 136 dbSNP
rs201693727 137 dbSNP
rs1221359499 138 dbSNP
rs1419497205 144 dbSNP
rs1160992096 145 dbSNP
rs1042235 149 dbSNP
rs1383099463 159 dbSNP
rs1240153752 169 dbSNP
rs990212236 174 dbSNP
rs1423966302 175 dbSNP
rs914436246 180 dbSNP
rs1406846128 183 dbSNP
rs1346304203 190 dbSNP
rs940244447 193 dbSNP
rs945858502 195 dbSNP
rs1278513957 209 dbSNP
rs1041668920 219 dbSNP
rs139138569 220 dbSNP
rs551291843 226 dbSNP
rs72740218 228 dbSNP
rs1363162622 232 dbSNP
rs899479783 238 dbSNP
rs760061823 240 dbSNP
rs995235572 242 dbSNP
rs1486182919 245 dbSNP
rs1361763679 248 dbSNP
rs1269040936 250 dbSNP
rs774674935 260 dbSNP
rs1449544489 261 dbSNP
rs777643790 262 dbSNP
rs1224610995 263 dbSNP
rs1285360847 264 dbSNP
rs895178975 271 dbSNP
rs1487378019 275 dbSNP
rs1013520406 278 dbSNP
rs1225311570 285 dbSNP
rs748071559 287 dbSNP
rs1270279578 291 dbSNP
rs149881404 293 dbSNP
rs10921309 294 dbSNP
rs746730937 298 dbSNP
rs770429796 300 dbSNP
rs777057226 302 dbSNP
rs1379706533 303 dbSNP
rs1328441634 307 dbSNP
rs1158921662 310 dbSNP
rs1379098189 311 dbSNP
rs1417354575 312 dbSNP
rs1165319502 315 dbSNP
rs1391377748 317 dbSNP
rs1386195876 318 dbSNP
rs1005459654 326 dbSNP
rs1202492076 332 dbSNP
rs1232573460 334 dbSNP
rs1384052287 335 dbSNP
rs1318274099 349 dbSNP
rs1481095393 350 dbSNP
rs1015055284 354 dbSNP
rs566977698 355 dbSNP
rs1180701812 361 dbSNP
rs1031506154 362 dbSNP
rs1429864737 363 dbSNP
rs1175113226 367 dbSNP
rs1476720809 371 dbSNP
rs760269138 373 dbSNP
rs957190429 374 dbSNP
rs1011366066 379 dbSNP
rs971648179 381 dbSNP
rs953717355 386 dbSNP
rs1003098239 418 dbSNP
rs1205934804 425 dbSNP
rs1034370978 427 dbSNP
rs961660461 432 dbSNP
rs538702798 433 dbSNP
rs1198807925 434 dbSNP
rs763857407 435 dbSNP
rs1270833964 446 dbSNP
rs1387007530 450 dbSNP
rs1407750170 452 dbSNP
rs914635524 460 dbSNP
rs1363255670 464 dbSNP
rs1354561572 480 dbSNP
rs1463207720 482 dbSNP
rs567626813 486 dbSNP
rs920139090 486 dbSNP
rs56152513 487 dbSNP
rs1334226002 492 dbSNP
rs1381118615 495 dbSNP
rs397940332 497 dbSNP
rs77690322 497 dbSNP
rs967274594 498 dbSNP
rs78296320 499 dbSNP
rs1381943127 501 dbSNP
rs977659006 502 dbSNP
rs1167965397 503 dbSNP
rs916681017 513 dbSNP
rs1272416929 514 dbSNP
rs1308084134 518 dbSNP
rs1042243 532 dbSNP
rs1387892625 535 dbSNP
rs1185828433 539 dbSNP
rs558342645 540 dbSNP
rs575087669 542 dbSNP
rs544149865 544 dbSNP
rs1440041606 553 dbSNP
rs554830626 558 dbSNP
rs943968402 560 dbSNP
rs574608512 564 dbSNP
rs1195267035 572 dbSNP
rs1340335936 573 dbSNP
rs145381922 582 dbSNP
rs1383337640 583 dbSNP
rs920952705 598 dbSNP
rs1183935226 616 dbSNP
rs930966664 617 dbSNP
rs1337430286 618 dbSNP
rs1328981558 621 dbSNP
rs893004970 623 dbSNP
rs10801173 625 dbSNP
rs1185795276 626 dbSNP
rs1161797201 630 dbSNP
rs886862140 641 dbSNP
rs1233918677 644 dbSNP
rs1419633692 654 dbSNP
rs1482075126 667 dbSNP
rs1271131044 668 dbSNP
rs1478510857 673 dbSNP
rs953790675 675 dbSNP
rs781407284 676 dbSNP
rs1036951916 678 dbSNP
rs907348316 696 dbSNP
rs1352775926 698 dbSNP
rs1409131054 699 dbSNP
rs1003152289 704 dbSNP
rs1404864848 705 dbSNP
rs1304408522 709 dbSNP
rs1405225378 713 dbSNP
rs1348902967 714 dbSNP
rs1158561849 715 dbSNP
rs1322016118 715 dbSNP
rs1402746933 715 dbSNP
rs1471886734 715 dbSNP
rs534821329 715 dbSNP
rs1469657143 727 dbSNP
rs1337828412 728 dbSNP
rs1361221648 733 dbSNP
rs1429241805 736 dbSNP
rs1270067955 738 dbSNP
rs1362817396 743 dbSNP
rs1220536931 749 dbSNP
rs1490256614 750 dbSNP
rs1281658289 751 dbSNP
rs1245150767 756 dbSNP
rs1019282414 757 dbSNP
rs190514992 764 dbSNP
rs1284681046 780 dbSNP
rs1204490113 785 dbSNP
rs1326958138 788 dbSNP
rs1034589622 790 dbSNP
rs958730149 794 dbSNP
rs1366489007 799 dbSNP
rs1280506011 802 dbSNP
rs927105647 813 dbSNP
rs1445013247 814 dbSNP
rs775602698 814 dbSNP
rs1320277491 815 dbSNP
rs758289126 815 dbSNP
rs545903472 816 dbSNP
rs529292413 827 dbSNP
rs1432605551 829 dbSNP
rs550950160 829 dbSNP
rs967872346 831 dbSNP
rs1489009905 836 dbSNP
rs952940615 837 dbSNP
rs1207839034 852 dbSNP
rs565524393 852 dbSNP
rs916712365 857 dbSNP
rs531105809 860 dbSNP
rs912413627 861 dbSNP
rs982602387 862 dbSNP
rs756114257 863 dbSNP
rs1298540885 867 dbSNP
rs965164514 869 dbSNP
rs1362181600 870 dbSNP
rs1297363027 872 dbSNP
rs1427928606 873 dbSNP
rs149224598 875 dbSNP
rs1053067411 876 dbSNP
rs1173898523 886 dbSNP
rs142385358 894 dbSNP
rs1465969359 895 dbSNP
rs1399307364 900 dbSNP
rs533240224 901 dbSNP
rs1048544604 907 dbSNP
rs12136893 909 dbSNP
rs939784317 913 dbSNP
rs1389734079 915 dbSNP
rs1187718300 919 dbSNP
rs1046132379 921 dbSNP
rs907400612 926 dbSNP
rs1447368894 927 dbSNP
rs1217947662 945 dbSNP
rs1244744258 947 dbSNP
rs1184192485 953 dbSNP
rs1482872368 956 dbSNP
rs1253775971 962 dbSNP
rs889586552 962 dbSNP
rs116164283 983 dbSNP
rs1344916527 989 dbSNP
rs181647269 993 dbSNP
rs1316146544 994 dbSNP
rs73054120 999 dbSNP
rs746409330 1004 dbSNP
rs775806496 1010 dbSNP
rs903158658 1012 dbSNP
rs1442953282 1013 dbSNP
rs999368389 1013 dbSNP
rs1019643968 1028 dbSNP
rs1167023391 1036 dbSNP
rs34832679 1041 dbSNP
rs555232762 1042 dbSNP
rs1284932184 1043 dbSNP
rs965216928 1052 dbSNP
rs1386911770 1054 dbSNP
rs558624865 1063 dbSNP
rs114472181 1066 dbSNP
rs1267563591 1069 dbSNP
rs1253932453 1075 dbSNP
rs1178443337 1076 dbSNP
rs1490353799 1083 dbSNP
rs952752118 1110 dbSNP
rs1200625190 1120 dbSNP
rs1230813686 1125 dbSNP
rs1250417543 1143 dbSNP
rs1202648818 1152 dbSNP
rs1468960941 1159 dbSNP
rs1361112963 1166 dbSNP
rs924003918 1174 dbSNP
rs1244459480 1179 dbSNP
rs1158328230 1183 dbSNP
rs1381252662 1199 dbSNP
rs1309705518 1207 dbSNP
rs1224827405 1240 dbSNP
rs1350017635 1242 dbSNP
rs984031330 1245 dbSNP
rs1422089629 1267 dbSNP
rs908230985 1267 dbSNP
rs1407032831 1276 dbSNP
rs1366381017 1279 dbSNP
rs746571732 1281 dbSNP
rs368067826 1283 dbSNP
rs537664229 1284 dbSNP
rs186843252 1285 dbSNP
rs41520747 1289 dbSNP
rs937703563 1302 dbSNP
rs1410637585 1303 dbSNP
rs1334185454 1312 dbSNP
rs567659623 1315 dbSNP
rs1279955510 1317 dbSNP
rs563287091 1318 dbSNP
rs894617427 1320 dbSNP
rs947643941 1321 dbSNP
rs1040859468 1322 dbSNP
rs1290928580 1330 dbSNP
rs1229596678 1332 dbSNP
rs896908979 1334 dbSNP
rs1043295521 1336 dbSNP
rs1225373564 1338 dbSNP
rs1048051234 1355 dbSNP
rs111594687 1356 dbSNP
rs1012486276 1359 dbSNP
rs540113411 1364 dbSNP
rs1023828980 1367 dbSNP
rs1359614425 1369 dbSNP
rs1388379203 1371 dbSNP
rs998858530 1376 dbSNP
rs553770326 1377 dbSNP
rs1457733641 1378 dbSNP
rs1019696198 1379 dbSNP
rs75425660 1385 dbSNP
rs1156337181 1388 dbSNP
rs1182029348 1390 dbSNP
rs1004138903 1400 dbSNP
rs1239173582 1413 dbSNP
rs1441920181 1417 dbSNP
rs762370894 1428 dbSNP
rs957016134 1432 dbSNP
rs1264341707 1436 dbSNP
rs1182365119 1438 dbSNP
rs1209702872 1443 dbSNP
rs1266715179 1446 dbSNP
rs1345886713 1447 dbSNP
rs1255474481 1453 dbSNP
rs545942058 1463 dbSNP
rs1385127729 1467 dbSNP
rs1028131822 1477 dbSNP
rs952558892 1487 dbSNP
rs953353462 1488 dbSNP
rs1364383308 1514 dbSNP
rs1318540943 1520 dbSNP
rs984475339 1521 dbSNP
rs1402362265 1535 dbSNP
rs1171446981 1536 dbSNP
rs1015505390 1537 dbSNP
rs1374384894 1540 dbSNP
rs985396628 1541 dbSNP
rs961374609 1555 dbSNP
rs1246568715 1558 dbSNP
rs1186028282 1563 dbSNP
rs1394375928 1565 dbSNP
rs911146022 1566 dbSNP
rs1255597783 1568 dbSNP
rs1409613037 1571 dbSNP
rs1341755499 1580 dbSNP
rs562556643 1581 dbSNP
rs1227942158 1586 dbSNP
rs1341273546 1587 dbSNP
rs927578076 1599 dbSNP
rs1450180799 1602 dbSNP
rs937755928 1611 dbSNP
rs1332952208 1615 dbSNP
rs1393731140 1620 dbSNP
rs1450178735 1631 dbSNP
rs990542847 1636 dbSNP
rs538158667 1644 dbSNP
rs1168910085 1645 dbSNP
rs1428690359 1647 dbSNP
rs147074420 1656 dbSNP
rs947566549 1660 dbSNP
rs1473425106 1665 dbSNP
rs888141894 1667 dbSNP
rs1185517026 1668 dbSNP
rs1246834773 1671 dbSNP
rs1043736674 1672 dbSNP
rs776742987 1678 dbSNP
rs1204772564 1681 dbSNP
rs1482181049 1682 dbSNP
rs1272242327 1683 dbSNP
rs924884871 1684 dbSNP
rs1229766433 1687 dbSNP
rs934867881 1693 dbSNP
rs74321815 1696 dbSNP
rs113200467 1702 dbSNP
rs766341057 1703 dbSNP
rs1368265405 1705 dbSNP
rs996910614 1712 dbSNP
rs1202149066 1719 dbSNP
rs1413523240 1727 dbSNP
rs547041786 1727 dbSNP
rs1162038906 1738 dbSNP
rs189911619 1742 dbSNP
rs1031591970 1753 dbSNP
rs553868418 1758 dbSNP
rs751445975 1758 dbSNP
rs768026277 1758 dbSNP
rs756273418 1764 dbSNP
rs1022367863 1781 dbSNP
rs1475117545 1782 dbSNP
rs1171738654 1786 dbSNP
rs546971781 1788 dbSNP
rs764021805 1791 dbSNP
rs1288861782 1793 dbSNP
rs1402688033 1800 dbSNP
rs181176216 1805 dbSNP
rs1015805318 1813 dbSNP
rs1402589673 1814 dbSNP
rs961324055 1816 dbSNP
rs532353406 1823 dbSNP
rs377296859 1824 dbSNP
rs1325416391 1828 dbSNP
rs1218679153 1832 dbSNP
rs779442313 1834 dbSNP
rs764745821 1838 dbSNP
rs959006158 1838 dbSNP
rs976693607 1857 dbSNP
rs569030907 1858 dbSNP
rs537899530 1860 dbSNP
rs1222479384 1866 dbSNP
rs1431534125 1866 dbSNP
rs1262914490 1867 dbSNP
rs1483751387 1891 dbSNP
rs140913021 1894 dbSNP
rs929797513 1899 dbSNP
rs1245952332 1902 dbSNP
rs1196431902 1903 dbSNP
rs200751536 1904 dbSNP
rs909653830 1905 dbSNP
rs1208027484 1906 dbSNP
rs947778953 1910 dbSNP
rs1280101860 1913 dbSNP
rs758806360 1916 dbSNP
rs1446538824 1920 dbSNP
rs763945029 1931 dbSNP
rs1194449371 1946 dbSNP
rs1273470785 1953 dbSNP
rs969330579 1960 dbSNP
rs1366558529 1963 dbSNP
rs1320547938 1971 dbSNP
rs978954414 1974 dbSNP
rs1456098368 1978 dbSNP
rs1052696223 1979 dbSNP
rs150193543 1979 dbSNP
rs138070438 1985 dbSNP
rs1423256814 1990 dbSNP
rs934933613 2004 dbSNP
rs1187908332 2005 dbSNP
rs1011095739 2013 dbSNP
rs754456786 2020 dbSNP
rs1378000065 2023 dbSNP
rs1377439964 2042 dbSNP
rs1467374414 2047 dbSNP
rs1022441121 2049 dbSNP
rs1287088800 2062 dbSNP
rs1311260374 2068 dbSNP
rs1384137860 2068 dbSNP
rs1225373016 2097 dbSNP
rs1041263682 2106 dbSNP
rs1400487059 2108 dbSNP
rs1230151331 2118 dbSNP
rs553760703 2131 dbSNP
rs576948733 2133 dbSNP
rs539456977 2135 dbSNP
rs1343020907 2139 dbSNP
rs556167723 2143 dbSNP
rs1433575269 2151 dbSNP
rs1381921623 2152 dbSNP
rs1303520663 2157 dbSNP
rs932648857 2161 dbSNP
rs149539989 2182 dbSNP
rs966063416 2192 dbSNP
rs888543132 2197 dbSNP
rs1430623231 2198 dbSNP
rs1390604431 2199 dbSNP
rs752319738 2199 dbSNP
rs1025542079 2204 dbSNP
rs1415807095 2206 dbSNP
rs1006017468 2208 dbSNP
rs1482679475 2229 dbSNP
rs561069411 2234 dbSNP
rs541522110 2246 dbSNP
rs909678393 2249 dbSNP
rs947813416 2249 dbSNP
rs896956131 2250 dbSNP
rs1324042348 2251 dbSNP
rs1314149848 2258 dbSNP
rs145994077 2263 dbSNP
rs751368154 2265 dbSNP
rs1199041290 2275 dbSNP
rs1377134441 2276 dbSNP
rs1309902891 2284 dbSNP
rs1410705516 2288 dbSNP
rs939010054 2291 dbSNP
rs1268279635 2294 dbSNP
rs1052505003 2302 dbSNP
rs1351397655 2312 dbSNP
rs796825750 2322 dbSNP
rs1165471145 2325 dbSNP
rs1423154721 2331 dbSNP
rs576355033 2337 dbSNP
rs946913774 2337 dbSNP
rs1043927144 2341 dbSNP
rs1250539362 2347 dbSNP
rs1434741227 2352 dbSNP
rs959061533 2356 dbSNP
rs1011916715 2372 dbSNP
rs1022338130 2380 dbSNP
rs1489704789 2381 dbSNP
rs1156699384 2386 dbSNP
rs1266380335 2398 dbSNP
rs1007688747 2405 dbSNP
rs1320401865 2408 dbSNP
rs1290313340 2411 dbSNP
rs1362973389 2415 dbSNP
rs1229016934 2419 dbSNP
rs147162176 2429 dbSNP
rs1160325456 2435 dbSNP
rs1363237188 2442 dbSNP
rs967831113 2445 dbSNP
rs1403795627 2446 dbSNP
rs1392682883 2451 dbSNP
rs138723880 2463 dbSNP
rs1457374976 2467 dbSNP
rs1316370214 2471 dbSNP
rs924829106 2473 dbSNP
rs956195707 2479 dbSNP
rs1160762596 2481 dbSNP
rs1293791421 2492 dbSNP
rs1457248139 2493 dbSNP
rs1410566517 2506 dbSNP
rs1019010545 2508 dbSNP
rs1434510944 2509 dbSNP
rs1268532418 2512 dbSNP
rs1190923541 2516 dbSNP
rs1467535333 2524 dbSNP
rs1369256855 2526 dbSNP
rs1328654290 2531 dbSNP
rs543721835 2536 dbSNP
rs993525420 2541 dbSNP
rs922857016 2543 dbSNP
rs1331861003 2546 dbSNP
rs560426963 2548 dbSNP
rs1301748139 2568 dbSNP
rs932866618 2573 dbSNP
rs985487334 2587 dbSNP
rs951302126 2592 dbSNP
rs1322535901 2606 dbSNP
rs1435695080 2614 dbSNP
rs1387326199 2616 dbSNP
rs1156261978 2618 dbSNP
rs1376534765 2634 dbSNP
rs1467277566 2639 dbSNP
rs983967758 2660 dbSNP
rs185666931 2665 dbSNP
rs1016756219 2678 dbSNP
rs532637607 2683 dbSNP
rs909843189 2688 dbSNP
rs969189041 2690 dbSNP
rs552153354 2703 dbSNP
rs1189837579 2705 dbSNP
rs562499216 2709 dbSNP
rs980951008 2710 dbSNP
rs1345995418 2718 dbSNP
rs865959807 2722 dbSNP
rs1255564691 2726 dbSNP
rs1232365864 2746 dbSNP
rs1345528516 2747 dbSNP
rs897017542 2748 dbSNP
rs927719287 2756 dbSNP
rs1364305765 2759 dbSNP
rs1435761608 2759 dbSNP
rs1315624777 2760 dbSNP
rs1397195480 2768 dbSNP
rs1402284547 2776 dbSNP
rs757237082 2787 dbSNP
rs1357456395 2789 dbSNP
rs1460156630 2790 dbSNP
rs1203353729 2791 dbSNP
rs370818382 2798 dbSNP
rs374583516 2799 dbSNP
rs1220905465 2808 dbSNP
rs1432459701 2808 dbSNP
rs1392465628 2811 dbSNP
rs939077157 2817 dbSNP
rs1489609246 2831 dbSNP
rs531730884 2831 dbSNP
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rs1255236666 6205 dbSNP
rs1382157193 6206 dbSNP
rs759872604 6206 dbSNP
rs995126858 6211 dbSNP
rs907684970 6226 dbSNP
rs767863723 6230 dbSNP
rs753917970 6232 dbSNP
rs1200577035 6240 dbSNP
rs1046046528 6242 dbSNP
rs376114487 6243 dbSNP
rs1471196347 6248 dbSNP
rs1289624387 6254 dbSNP
rs1161719311 6259 dbSNP
rs1413374763 6266 dbSNP
rs190513203 6270 dbSNP
rs905560940 6276 dbSNP
rs1208499387 6277 dbSNP
rs1356282777 6290 dbSNP
rs894296379 6296 dbSNP
rs1166834355 6305 dbSNP
rs1240020505 6305 dbSNP
rs1001605408 6307 dbSNP
rs138765552 6316 dbSNP
rs1446026012 6318 dbSNP
rs1437457096 6320 dbSNP
rs892890190 6322 dbSNP
rs1402921475 6337 dbSNP
rs1024489767 6340 dbSNP
rs1337061150 6345 dbSNP
rs971115948 6350 dbSNP
rs1377964149 6356 dbSNP
rs1009918554 6368 dbSNP
rs977090320 6377 dbSNP
rs1021103065 6378 dbSNP
rs1031308032 6381 dbSNP
rs966839042 6389 dbSNP
rs1009139993 6391 dbSNP
rs1264304254 6404 dbSNP
rs1216532525 6405 dbSNP
rs1019614152 6407 dbSNP
rs1275452411 6421 dbSNP
rs1316432721 6424 dbSNP
rs921467502 6428 dbSNP
rs990806546 6428 dbSNP
rs1198644602 6436 dbSNP
rs964954064 6442 dbSNP
rs1273336048 6469 dbSNP
rs986957747 6474 dbSNP
rs756572780 6478 dbSNP
rs1298521601 6479 dbSNP
rs755198831 6481 dbSNP
rs1399328505 6489 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000432079.1 | 3UTR | CUCAUAAUUUUAUUAUGGCCGUCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000432079.1 | 3UTR | CUCAUAAUUUUAUUAUGGCCGUCUAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
280 hsa-miR-4282 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057628 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT060732 RPS3 ribosomal protein S3 2 2
MIRT063371 ETNK1 ethanolamine kinase 1 2 2
MIRT066257 LRIG3 leucine rich repeats and immunoglobulin like domains 3 2 4
MIRT070774 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT070871 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 4
MIRT078056 PCTP phosphatidylcholine transfer protein 2 2
MIRT078408 DCAF7 DDB1 and CUL4 associated factor 7 2 4
MIRT084059 PPP1R3D protein phosphatase 1 regulatory subunit 3D 2 2
MIRT093537 GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 2 6
MIRT096072 SFXN1 sideroflexin 1 2 2
MIRT098316 REV3L REV3 like, DNA directed polymerase zeta catalytic subunit 2 2
MIRT100493 UHRF1BP1 UHRF1 binding protein 1 2 2
MIRT102254 HBP1 HMG-box transcription factor 1 2 4
MIRT105318 VPS37A VPS37A, ESCRT-I subunit 2 2
MIRT114143 MZT1 mitotic spindle organizing protein 1 2 4
MIRT114873 DICER1 dicer 1, ribonuclease III 2 2
MIRT134683 PNRC2 proline rich nuclear receptor coactivator 2 2 2
MIRT137640 RCOR1 REST corepressor 1 2 2
MIRT155449 CCNT2 cyclin T2 2 4
MIRT165656 DCTN4 dynactin subunit 4 2 2
MIRT177570 CSTF2T cleavage stimulation factor subunit 2 tau variant 2 4
MIRT188514 E2F7 E2F transcription factor 7 2 10
MIRT193019 TMOD3 tropomodulin 3 2 4
MIRT195823 GADD45A growth arrest and DNA damage inducible alpha 2 2
MIRT195885 DEPDC1 DEP domain containing 1 2 6
MIRT206029 NUP50 nucleoporin 50 2 6
MIRT212148 CLCN3 chloride voltage-gated channel 3 2 2
MIRT213999 DCP2 decapping mRNA 2 2 2
MIRT214650 HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 2 2
MIRT221568 CBX3 chromobox 3 2 2
MIRT224544 ZNF623 zinc finger protein 623 2 2
MIRT227654 SET SET nuclear proto-oncogene 2 2
MIRT229992 CHIC1 cysteine rich hydrophobic domain 1 2 2
MIRT238968 QKI QKI, KH domain containing RNA binding 2 2
MIRT239825 ACTB actin beta 2 2
MIRT241084 ZXDA zinc finger, X-linked, duplicated A 2 4
MIRT244852 ZBTB5 zinc finger and BTB domain containing 5 2 2
MIRT264534 TARDBP TAR DNA binding protein 2 2
MIRT271438 SKI SKI proto-oncogene 2 2
MIRT271597 ENAH ENAH, actin regulator 2 2
MIRT294332 ZNF264 zinc finger protein 264 2 2
MIRT296341 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT301715 TEF TEF, PAR bZIP transcription factor 2 2
MIRT308549 ZNF654 zinc finger protein 654 2 2
MIRT313866 DEPDC1B DEP domain containing 1B 2 2
MIRT315529 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT321066 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT343777 NUTF2 nuclear transport factor 2 2 2
MIRT359109 MAP1B microtubule associated protein 1B 2 2
MIRT397393 GOLGA3 golgin A3 2 4
MIRT400822 CPEB2 cytoplasmic polyadenylation element binding protein 2 2 2
MIRT442171 DSEL dermatan sulfate epimerase-like 2 2
MIRT442777 JAG1 jagged 1 2 2
MIRT442862 SCARF1 scavenger receptor class F member 1 2 4
MIRT442919 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 2 2
MIRT444567 TRA2B transformer 2 beta homolog 2 2
MIRT444718 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT445018 RBMS3 RNA binding motif single stranded interacting protein 3 2 2
MIRT445853 LRRC1 leucine rich repeat containing 1 2 2
MIRT446242 HELZ helicase with zinc finger 2 2
MIRT446542 GOLGA8B golgin A8 family member B 2 2
MIRT446643 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT446948 ZMAT3 zinc finger matrin-type 3 2 4
MIRT447061 KCNAB1 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 2 2
MIRT447327 ZSCAN21 zinc finger and SCAN domain containing 21 2 2
MIRT447995 CDX1 caudal type homeobox 1 2 2
MIRT448543 RHEBP1 RHEB pseudogene 1 2 6
MIRT448752 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT448772 GOLGA8A golgin A8 family member A 2 2
MIRT449342 WDR26 WD repeat domain 26 2 2
MIRT450011 SLC16A6 solute carrier family 16 member 6 2 4
MIRT450229 PCNX pecanex homolog 1 2 2
MIRT450340 MRPL17 mitochondrial ribosomal protein L17 2 4
MIRT450381 MSI2 musashi RNA binding protein 2 2 2
MIRT450759 PGGT1B protein geranylgeranyltransferase type I subunit beta 2 2
MIRT450809 NRCAM neuronal cell adhesion molecule 2 2
MIRT450947 ATAD2 ATPase family, AAA domain containing 2 2 2
MIRT459095 CCPG1 cell cycle progression 1 2 2
MIRT462428 TWISTNB TWIST neighbor 2 2
MIRT465200 TROVE2 TROVE domain family member 2 2 4
MIRT467382 SON SON DNA binding protein 2 4
MIRT468546 SERP1 stress associated endoplasmic reticulum protein 1 2 2
MIRT471506 PDE4D phosphodiesterase 4D 2 2
MIRT471981 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT474478 KLHL11 kelch like family member 11 2 8
MIRT475011 KANSL1 KAT8 regulatory NSL complex subunit 1 2 8
MIRT480341 C5orf51 chromosome 5 open reading frame 51 2 2
MIRT482696 TEX9 testis expressed 9 2 6
MIRT483462 YTHDF1 YTH N6-methyladenosine RNA binding protein 1 2 6
MIRT485623 FAM217B family with sequence similarity 217 member B 2 2
MIRT485714 CASP16 caspase 16, pseudogene 2 8
MIRT486279 SEC23A Sec23 homolog A, coat complex II component 2 2
MIRT491000 PEBP1 phosphatidylethanolamine binding protein 1 2 4
MIRT492594 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT493365 KIF5B kinesin family member 5B 2 2
MIRT494316 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT495208 EDN3 endothelin 3 2 2
MIRT497011 TCF15 transcription factor 15 2 2
MIRT498512 FRK fyn related Src family tyrosine kinase 2 2
MIRT498778 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT501045 SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase 2 6
MIRT502939 CDC37L1 cell division cycle 37 like 1 2 8
MIRT504806 VHL von Hippel-Lindau tumor suppressor 2 6
MIRT505656 SHMT1 serine hydroxymethyltransferase 1 2 6
MIRT505964 RAB5C RAB5C, member RAS oncogene family 2 6
MIRT506322 OTUD4 OTU deubiquitinase 4 2 4
MIRT506803 KLHL15 kelch like family member 15 2 6
MIRT506917 KBTBD8 kelch repeat and BTB domain containing 8 2 4
MIRT507400 EMC7 ER membrane protein complex subunit 7 2 8
MIRT507471 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 6
MIRT508058 ATP13A3 ATPase 13A3 2 4
MIRT508135 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT509895 RPS23 ribosomal protein S23 2 4
MIRT510881 RAN RAN, member RAS oncogene family 2 8
MIRT513766 PEX5L peroxisomal biogenesis factor 5 like 2 4
MIRT516898 COPS8 COP9 signalosome subunit 8 2 2
MIRT518703 TIMD4 T-cell immunoglobulin and mucin domain containing 4 2 4
MIRT520429 TTPAL alpha tocopherol transfer protein like 2 6
MIRT521843 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT522116 NUDT3 nudix hydrolase 3 2 4
MIRT525467 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT525583 MTRNR2L7 MT-RNR2-like 7 2 2
MIRT525906 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT526072 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT526232 MTRNR2L5 MT-RNR2-like 5 2 4
MIRT526455 FAM71F2 family with sequence similarity 71 member F2 2 4
MIRT526515 POU5F1B POU class 5 homeobox 1B 2 2
MIRT528032 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT528422 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT528995 ISLR2 immunoglobulin superfamily containing leucine rich repeat 2 2 4
MIRT529311 ATRNL1 attractin like 1 2 2
MIRT529376 SKP1 S-phase kinase associated protein 1 2 4
MIRT530015 SRRM1 serine and arginine repetitive matrix 1 2 2
MIRT530089 FMN2 formin 2 2 2
MIRT530942 ENPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 2 2
MIRT531229 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT533088 YTHDF3 YTH N6-methyladenosine RNA binding protein 3 2 2
MIRT533299 USP46 ubiquitin specific peptidase 46 2 2
MIRT533318 UNKL unkempt family like zinc finger 2 2
MIRT533721 TMEM30A transmembrane protein 30A 2 2
MIRT534096 AZF1 azoospermia factor 1 2 2
MIRT534188 SLC7A11 solute carrier family 7 member 11 2 2
MIRT534493 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT536077 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT536242 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT537524 FAM104A family with sequence similarity 104 member A 2 2
MIRT538088 DGKH diacylglycerol kinase eta 2 2
MIRT538475 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT538853 BTG1 BTG anti-proliferation factor 1 2 4
MIRT539075 GDNF glial cell derived neurotrophic factor 2 2
MIRT539480 ACVR2B activin A receptor type 2B 2 4
MIRT540210 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT541940 TSPAN2 tetraspanin 2 2 2
MIRT543812 COCH cochlin 2 2
MIRT545120 PDZRN4 PDZ domain containing ring finger 4 2 2
MIRT545571 GIMAP4 GTPase, IMAP family member 4 2 2
MIRT545989 XKR4 XK related 4 2 2
MIRT547213 PANK3 pantothenate kinase 3 2 4
MIRT547740 KIAA1468 KIAA1468 2 2
MIRT548022 GRB2 growth factor receptor bound protein 2 2 4
MIRT548032 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548102 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 4
MIRT548217 FKBP1A FK506 binding protein 1A 2 2
MIRT548588 DDX3X DEAD-box helicase 3, X-linked 2 4
MIRT548953 CDC27 cell division cycle 27 2 2
MIRT549072 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT550368 INCENP inner centromere protein 2 6
MIRT550546 MYZAP myocardial zonula adherens protein 2 2
MIRT551491 TMEM192 transmembrane protein 192 2 4
MIRT553078 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT554104 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT555127 PTPRG protein tyrosine phosphatase, receptor type G 2 2
MIRT555477 POC1B-GALNT4 POC1B-GALNT4 readthrough 2 2
MIRT555978 NPTN neuroplastin 2 2
MIRT557011 HPRT1 hypoxanthine phosphoribosyltransferase 1 2 2
MIRT557706 GALNT4 polypeptide N-acetylgalactosaminyltransferase 4 2 2
MIRT558333 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT558488 DBN1 drebrin 1 2 2
MIRT559942 ZNF567 zinc finger protein 567 2 2
MIRT561127 ATP2B1 ATPase plasma membrane Ca2+ transporting 1 2 2
MIRT561791 PAWR pro-apoptotic WT1 regulator 2 2
MIRT562438 EEF2 eukaryotic translation elongation factor 2 2 2
MIRT563102 PABPC4L poly(A) binding protein cytoplasmic 4 like 2 2
MIRT563212 ZNF813 zinc finger protein 813 2 2
MIRT563426 KIF3A kinesin family member 3A 2 2
MIRT563473 SPIN4 spindlin family member 4 2 2
MIRT564015 HSPA4 heat shock protein family A (Hsp70) member 4 2 4
MIRT564117 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT564223 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT564503 CACNG1 calcium voltage-gated channel auxiliary subunit gamma 1 2 2
MIRT564515 DUSP3 dual specificity phosphatase 3 2 2
MIRT564811 ZBTB21 zinc finger and BTB domain containing 21 2 2
MIRT565265 TPD52 tumor protein D52 2 2
MIRT566012 RHOB ras homolog family member B 2 2
MIRT566216 PTMA prothymosin, alpha 2 2
MIRT566638 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT566821 MAPK8 mitogen-activated protein kinase 8 2 2
MIRT566948 LEPROT leptin receptor overlapping transcript 2 2
MIRT567290 HNRNPAB heterogeneous nuclear ribonucleoprotein A/B 2 2
MIRT567895 CSTF2 cleavage stimulation factor subunit 2 2 2
MIRT568731 MTRNR2L3 MT-RNR2-like 3 2 2
MIRT571263 ZNF239 zinc finger protein 239 2 2
MIRT572593 EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 2 2
MIRT573827 TGOLN2 trans-golgi network protein 2 2 2
MIRT576391 Fhl2 four and a half LIM domains 2 2 2
MIRT609901 SMS spermine synthase 2 2
MIRT613710 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 2
MIRT614406 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT615042 DCX doublecortin 2 2
MIRT617514 C5orf45 MRN complex interacting protein 2 2
MIRT619476 PRDM10 PR/SET domain 10 2 2
MIRT620349 TLN1 talin 1 2 2
MIRT620910 PLA2G7 phospholipase A2 group VII 2 2
MIRT622131 SP4 Sp4 transcription factor 2 2
MIRT622955 OTUD7B OTU deubiquitinase 7B 2 2
MIRT623351 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT623619 INTU inturned planar cell polarity protein 2 2
MIRT624409 CCDC171 coiled-coil domain containing 171 2 2
MIRT625171 CCS copper chaperone for superoxide dismutase 2 2
MIRT625685 RPP40 ribonuclease P/MRP subunit p40 2 2
MIRT625875 ALDH18A1 aldehyde dehydrogenase 18 family member A1 2 2
MIRT626002 FAM107A family with sequence similarity 107 member A 2 2
MIRT626872 HRH4 histamine receptor H4 2 4
MIRT628220 FKBP9 FK506 binding protein 9 2 2
MIRT628265 DIO2 iodothyronine deiodinase 2 2 2
MIRT628402 C8orf37 chromosome 8 open reading frame 37 2 2
MIRT630564 C3orf36 chromosome 3 open reading frame 36 2 4
MIRT631577 RASSF9 Ras association domain family member 9 2 2
MIRT635730 CCDC58 coiled-coil domain containing 58 2 2
MIRT636224 SLC8A1 solute carrier family 8 member A1 2 2
MIRT636613 CLIC5 chloride intracellular channel 5 2 2
MIRT638899 CDK9 cyclin dependent kinase 9 2 2
MIRT640167 ATXN7L1 ataxin 7 like 1 2 2
MIRT642070 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT643034 CHCHD7 coiled-coil-helix-coiled-coil-helix domain containing 7 2 2
MIRT644572 SPOP speckle type BTB/POZ protein 2 2
MIRT644954 IFNB1 interferon beta 1 2 2
MIRT645948 TTF2 transcription termination factor 2 2 2
MIRT646440 XRCC2 X-ray repair cross complementing 2 2 2
MIRT647896 EPN2 epsin 2 2 2
MIRT648276 ZNF582 zinc finger protein 582 2 2
MIRT649381 NEDD1 neural precursor cell expressed, developmentally down-regulated 1 2 2
MIRT650254 CD68 CD68 molecule 2 2
MIRT650333 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT651707 VMP1 vacuole membrane protein 1 2 2
MIRT651774 VASP vasodilator stimulated phosphoprotein 2 2
MIRT653144 SRPK2 SRSF protein kinase 2 2 2
MIRT654112 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT654161 RORB RAR related orphan receptor B 2 2
MIRT655716 MLF2 myeloid leukemia factor 2 2 2
MIRT657476 HDAC4 histone deacetylase 4 2 2
MIRT658095 FOXO1 forkhead box O1 2 2
MIRT658860 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT658988 DNAJA1 DnaJ heat shock protein family (Hsp40) member A1 2 2
MIRT660767 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT661622 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT661694 TFDP2 transcription factor Dp-2 2 2
MIRT662208 PLA2G4E phospholipase A2 group IVE 2 2
MIRT662443 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT664422 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT687505 NECAB1 N-terminal EF-hand calcium binding protein 1 2 2
MIRT689910 SOD2 superoxide dismutase 2 2 2
MIRT690781 PLA2G2C phospholipase A2 group IIC 2 2
MIRT698488 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT699685 SFMBT2 Scm like with four mbt domains 2 2 2
MIRT700926 PDS5A PDS5 cohesin associated factor A 2 2
MIRT702258 LMNB1 lamin B1 2 2
MIRT703166 GPR137C G protein-coupled receptor 137C 2 2
MIRT703242 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT704737 CENPQ centromere protein Q 2 2
MIRT707310 GLRX2 glutaredoxin 2 2 2
MIRT710021 KCNQ5 potassium voltage-gated channel subfamily Q member 5 2 2
MIRT712212 SCOC short coiled-coil protein 2 2
MIRT714742 SETBP1 SET binding protein 1 2 2
MIRT718268 ZNF749 zinc finger protein 749 2 2
MIRT720553 DYRK4 dual specificity tyrosine phosphorylation regulated kinase 4 2 2
MIRT722248 RBM41 RNA binding motif protein 41 2 2
MIRT723767 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT723977 KIAA0146 scaffolding protein involved in DNA repair 1 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4282 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)

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