miRTarBase - #MIRT466013


—
pre-miRNA Information
pre-miRNA hsa-mir-4665   
Genomic Coordinates chr9: 6007826 - 6007904
Description Homo sapiens miR-4665 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4665-5p
Sequence 10| CUGGGGGACGCGUGAGCGCGAGC |32
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs901542342 1 dbSNP
rs1170299887 2 dbSNP
rs747546692 3 dbSNP
rs1260840238 4 dbSNP
rs1377576716 5 dbSNP
rs1349863083 6 dbSNP
rs933050749 7 dbSNP
rs1236802314 11 dbSNP
rs1050148325 12 dbSNP
rs1198393802 14 dbSNP
rs771241090 19 dbSNP
rs1258201615 20 dbSNP
rs1485839367 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TMEM189   
Synonyms KUA
Description transmembrane protein 189
Transcript NM_001162505   
Other Transcripts NM_199129   
Expression
Putative miRNA Targets on TMEM189
3'UTR of TMEM189
(miRNA target sites are highlighted)		 
>TMEM189|NM_001162505|3'UTR
   1 CTTCTCCGAGCCTGCTACCTGGTTGCCAACCTTCCCTAGCCCCCAAACCGAAGCCATCTGCCAAATTCCAGCCTCTTTGA
  81 GCTGGCCCCTCCAGATGGAGAGGACATCTCCTGGGCTGGGCCCAGGTACCCCAGCCCACCCCTCATGACACAGAATACTT
 161 GAGCCACTGATTTTTCATTTCTTTTTTTTTTTTTTCCTCGGCCCCTCCTCAGCCACCTGAGTTGCTCTATCTGCAAGCCT
 241 GACTCTGCCAGCCTCCCCTGGTAGAGAGGAGGTTTACCCACTCCCTGCACGCCTGCCGTCCCTGCCCCGCTGGGCAGCCC
 321 TTCAGTGTGGCTGGCGTTGGGGCCAGTGAGTTGCCTCTTTCCCTCCTTGTCTGGCCCCAGTGGTCTGGGGAGCCCCCAGG
 401 CACACCTAAGCGTCGTGGAGCATTGTTCTGCCACAGCCCTGCATACTGACCCCGGGAGGCTGGGCAGGTGGACAGCCCCA
 481 GCCACCACCTTCAGCCTAGCCTGTCCCCCAAGGATGGTGAAGCTCAGCAGGGGTCTGAGGGTAGCCGGCCAGAAGAGGCT
 561 GGAACCTCCTGCTCAAGTCTAGACCCCTACTTCTCTGCTGCCCCCACCCTGCCAGAGCTGATGTTTCCAATACCAAGATG
 641 TCTTCACAGGGCACAGCCCCTGCAGAGCATCTTGGTCATTTGGAAGAGGACACGGTATCCCCTCTGGCCAGAGTATGTCA
 721 GAGAAGGAAGAGTAGGGCTTTTTTGTTTTGTTTTTTTTTAAAGGTGCTTGCTTGTTTAATGTAAATAATAGAAAGCCTTA
 801 ATATCTTTTCTGTAACACGGAGTAATATTTTAATGTCATGTTTTGGATGTACATAATATATTTATAACAAAGCAGCAAGA
 881 GTCTACTTAACCTTGGCTGCCTCGTGGTGTTTCCTGGCTGGGTGGGGTGGGGGGTATCAAGGAGCCTGGGACGTGAGGCC
 961 CCACTCTCGCCCCATTCCCAGCTCCCCCCAACCCTGGCCTCAGGATGAGAGCTGTCACCTGAGACAGTGAATTAATGTTG
1041 ACATCTGCTCCAAAGCCTTTTGGAGGGGATTGGGTGAGGACAGTGGTCTTTCCTGTTGATCATGATGATAAAGTAATGAT
1121 GGCTGATCCCTATTTGTGACTTCCTTCAGCAAATATTCACTGGCACCTGGTGTGTGCCAGGCTCTGTCCTGTACACAGGT
1201 ACAGCGGTGAAAGAACCAACAAAGACCTATCCTGGTGGAGCTGACCTCCTGGGAAAAGAGTCAATAAACAAATAAATGCA
1281 CATGGAAATTCAGGTGGTGATTTGTGAAGAAAATCAAACAG
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cgAG-CGCGAGUGCGCAGGGGGUc 5'
            || || || :| :|||||||| 
Target 5' ctTCAGC-CTAGCCTGTCCCCCAa 3'
 489 - 511 160.00 -21.70
2 
miRNA  3' cgAGCGCG---AGUG-CGCAGGGGGuc 5'
            |||| |   || | || ||||||  
Target 5' tcTCGCCCCATTCCCAGC-TCCCCCca 3'
 965 - 990 136.00 -22.60
3 
miRNA  3' cgagcgcGAGUGCGCAGGGGGUc 5'
                 ||| :||  |||||| 
Target 5' cctacttCTC-TGCTGCCCCCAc 3'
 586 - 607 123.00 -17.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31509828 7 COSMIC
COSN30183613 35 COSMIC
COSN30491650 41 COSMIC
COSN30508076 43 COSMIC
COSN30511146 50 COSMIC
COSN30456444 55 COSMIC
COSN30620891 57 COSMIC
COSN30148949 58 COSMIC
COSN30463798 91 COSMIC
COSN31605593 111 COSMIC
COSN26574664 114 COSMIC
COSN19321535 138 COSMIC
COSN31589009 148 COSMIC
COSN30146895 165 COSMIC
COSN27264034 181 COSMIC
COSN31599301 181 COSMIC
COSN18742974 182 COSMIC
COSN20047758 182 COSMIC
COSN21480204 330 COSMIC
COSN7095533 415 COSMIC
COSN9141747 507 COSMIC
COSN9141746 623 COSMIC
COSN31564526 707 COSMIC
COSN20116542 750 COSMIC
COSN26506798 760 COSMIC
COSN25669758 801 COSMIC
COSN31535053 805 COSMIC
COSN26583634 819 COSMIC
COSN26564448 837 COSMIC
COSN29160578 1513 COSMIC
COSN22558046 1556 COSMIC
COSN29410492 1591 COSMIC
COSN10017291 1756 COSMIC
COSN1875016 1775 COSMIC
COSN18766404 1790 COSMIC
COSN20892610 1853 COSMIC
COSN29342557 1925 COSMIC
COSN20889666 2595 COSMIC
COSN22189436 3395 COSMIC
COSN4970419 3920 COSMIC
COSN7095532 4037 COSMIC
COSN20985664 4105 COSMIC
COSN25447551 4266 COSMIC
COSN24155668 4360 COSMIC
COSN27703811 4902 COSMIC
COSN21031935 4971 COSMIC
COSN7095531 4975 COSMIC
COSN16807796 5055 COSMIC
COSN16555584 5233 COSMIC
COSN9141744 5370 COSMIC
COSN30055748 5854 COSMIC
COSN9141743 6408 COSMIC
COSN29119822 6430 COSMIC
COSN18918180 6471 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs147320578 1 dbSNP
rs781258735 4 dbSNP
rs1329636863 6 dbSNP
rs200935124 7 dbSNP
rs746792344 8 dbSNP
rs757456130 11 dbSNP
rs1275587019 16 dbSNP
rs1438714879 17 dbSNP
rs1329506982 21 dbSNP
rs754039658 29 dbSNP
rs375681783 34 dbSNP
rs765855555 40 dbSNP
rs756201026 41 dbSNP
rs752833813 43 dbSNP
rs767979413 46 dbSNP
rs751901988 49 dbSNP
rs117150702 50 dbSNP
rs878934642 62 dbSNP
rs935573885 63 dbSNP
rs775439033 72 dbSNP
rs372971405 78 dbSNP
rs1378235523 79 dbSNP
rs200095641 83 dbSNP
rs1321306892 89 dbSNP
rs1021687087 95 dbSNP
rs764846288 96 dbSNP
rs1225736491 97 dbSNP
rs139346170 102 dbSNP
rs1287882074 108 dbSNP
rs1406015517 112 dbSNP
rs576928224 130 dbSNP
rs1347952013 133 dbSNP
rs1270892491 136 dbSNP
rs1444198797 139 dbSNP
rs1188906528 140 dbSNP
rs910922138 142 dbSNP
rs1443196935 145 dbSNP
rs957926757 163 dbSNP
rs1457744234 181 dbSNP
rs983883563 182 dbSNP
rs952686506 183 dbSNP
rs1025461873 184 dbSNP
rs1393763651 186 dbSNP
rs972666739 190 dbSNP
rs376759377 195 dbSNP
rs1345015471 196 dbSNP
rs1366212377 196 dbSNP
rs1405213245 196 dbSNP
rs764210921 196 dbSNP
rs80063255 197 dbSNP
rs112331719 198 dbSNP
rs1003514171 199 dbSNP
rs1201065306 199 dbSNP
rs905281084 200 dbSNP
rs1460327204 204 dbSNP
rs1249018660 211 dbSNP
rs11698092 217 dbSNP
rs879072355 228 dbSNP
rs1210976734 229 dbSNP
rs1249105115 236 dbSNP
rs1031233963 237 dbSNP
rs1024180690 241 dbSNP
rs777046985 248 dbSNP
rs1192089636 251 dbSNP
rs1370956250 255 dbSNP
rs999482090 265 dbSNP
rs1478742999 267 dbSNP
rs1010985698 273 dbSNP
rs1172606921 273 dbSNP
rs764563832 276 dbSNP
rs893995568 277 dbSNP
rs1189444197 278 dbSNP
rs11555105 280 dbSNP
rs1381407372 281 dbSNP
rs761253337 282 dbSNP
rs1052535262 287 dbSNP
rs573185641 290 dbSNP
rs890373250 291 dbSNP
rs1051438182 298 dbSNP
rs188930736 308 dbSNP
rs995805314 309 dbSNP
rs1464762708 311 dbSNP
rs1203717180 320 dbSNP
rs1259260597 323 dbSNP
rs900269513 325 dbSNP
rs1198961895 327 dbSNP
rs1037483338 336 dbSNP
rs34417961 351 dbSNP
rs910880336 361 dbSNP
rs984305257 365 dbSNP
rs1299775852 369 dbSNP
rs554945105 374 dbSNP
rs1393151218 377 dbSNP
rs1387629007 378 dbSNP
rs1302764676 379 dbSNP
rs1343770737 385 dbSNP
rs1386752565 391 dbSNP
rs1411708380 407 dbSNP
rs931057547 408 dbSNP
rs1363074590 411 dbSNP
rs941755015 412 dbSNP
rs1267539420 414 dbSNP
rs759263359 415 dbSNP
rs6125909 423 dbSNP
rs1267709962 428 dbSNP
rs150797656 439 dbSNP
rs1157726498 444 dbSNP
rs980014838 453 dbSNP
rs772313211 454 dbSNP
rs928851654 459 dbSNP
rs1179568430 460 dbSNP
rs1023623657 469 dbSNP
rs1458198937 470 dbSNP
rs770601125 475 dbSNP
rs10268 478 dbSNP
rs970053707 501 dbSNP
rs1431732221 502 dbSNP
rs1011432490 512 dbSNP
rs1373255694 515 dbSNP
rs914545687 532 dbSNP
rs1315426371 533 dbSNP
rs745897509 545 dbSNP
rs1262084211 546 dbSNP
rs557802428 547 dbSNP
rs956316981 552 dbSNP
rs1247672791 559 dbSNP
rs1206683849 576 dbSNP
rs1251451160 584 dbSNP
rs901347506 585 dbSNP
rs1175457891 587 dbSNP
rs774765520 591 dbSNP
rs538744942 592 dbSNP
rs184947393 604 dbSNP
rs1383631818 606 dbSNP
rs1308616923 607 dbSNP
rs1030231408 617 dbSNP
rs1298125147 629 dbSNP
rs996080255 629 dbSNP
rs1460512064 634 dbSNP
rs771155674 647 dbSNP
rs1226693280 650 dbSNP
rs1048033615 652 dbSNP
rs931066655 656 dbSNP
rs1367785305 657 dbSNP
rs536779787 659 dbSNP
rs918303697 660 dbSNP
rs1452992088 665 dbSNP
rs1306455086 676 dbSNP
rs1016338851 688 dbSNP
rs1006002092 689 dbSNP
rs142195337 690 dbSNP
rs1461667960 693 dbSNP
rs938537195 694 dbSNP
rs886153866 703 dbSNP
rs1466079553 708 dbSNP
rs1189510981 713 dbSNP
rs980045544 715 dbSNP
rs1426850920 728 dbSNP
rs1300570797 732 dbSNP
rs969983363 739 dbSNP
rs1465432330 743 dbSNP
rs575709905 745 dbSNP
rs1373595371 755 dbSNP
rs916587591 755 dbSNP
rs1436238549 756 dbSNP
rs1212308423 760 dbSNP
rs140191444 760 dbSNP
rs989467999 760 dbSNP
rs775575190 763 dbSNP
rs1047888238 777 dbSNP
rs958371988 778 dbSNP
rs1323623296 785 dbSNP
rs1389375992 789 dbSNP
rs148693779 790 dbSNP
rs750943317 796 dbSNP
rs999557497 804 dbSNP
rs907477622 805 dbSNP
rs1254105837 810 dbSNP
rs1044658651 818 dbSNP
rs747962281 819 dbSNP
rs781028304 820 dbSNP
rs1481225191 827 dbSNP
rs1480137148 830 dbSNP
rs948967355 836 dbSNP
rs1174954337 847 dbSNP
rs965546106 877 dbSNP
rs1458115062 878 dbSNP
rs1019722322 879 dbSNP
rs1344243715 885 dbSNP
rs1341882028 892 dbSNP
rs1007570659 893 dbSNP
rs1345651789 897 dbSNP
rs754671534 903 dbSNP
rs74440508 904 dbSNP
rs554365738 909 dbSNP
rs1331075765 915 dbSNP
rs530798464 921 dbSNP
rs374411362 929 dbSNP
rs1224115719 930 dbSNP
rs896823906 931 dbSNP
rs1036817954 933 dbSNP
rs1254612721 935 dbSNP
rs1394977186 935 dbSNP
rs924653556 936 dbSNP
rs1406316047 938 dbSNP
rs1396637206 939 dbSNP
rs977940141 946 dbSNP
rs536005539 952 dbSNP
rs1030151006 953 dbSNP
rs1423481370 959 dbSNP
rs1300668049 964 dbSNP
rs928477767 967 dbSNP
rs1044214802 968 dbSNP
rs551556945 969 dbSNP
rs1473872102 971 dbSNP
rs1358921763 975 dbSNP
rs193205326 985 dbSNP
rs779916476 986 dbSNP
rs1366974023 987 dbSNP
rs990469716 988 dbSNP
rs757950225 989 dbSNP
rs1419725229 991 dbSNP
rs1006261187 994 dbSNP
rs1385492680 996 dbSNP
rs6063474 1003 dbSNP
rs1443698883 1016 dbSNP
rs1161265247 1024 dbSNP
rs1398068819 1025 dbSNP
rs370082606 1027 dbSNP
rs1328133709 1032 dbSNP
rs1483019229 1038 dbSNP
rs2664558 1050 dbSNP
rs1225213405 1056 dbSNP
rs1357976031 1057 dbSNP
rs1263283361 1061 dbSNP
rs1243670689 1062 dbSNP
rs1002563804 1066 dbSNP
rs1381762456 1070 dbSNP
rs907405806 1071 dbSNP
rs1335815770 1073 dbSNP
rs778601438 1074 dbSNP
rs949032600 1079 dbSNP
rs1289748870 1083 dbSNP
rs1214024180 1086 dbSNP
rs547240951 1095 dbSNP
rs1019752127 1098 dbSNP
rs1054466002 1099 dbSNP
rs753370407 1102 dbSNP
rs1242979341 1107 dbSNP
rs954442665 1108 dbSNP
rs1181410577 1117 dbSNP
rs868561456 1117 dbSNP
rs1162876908 1155 dbSNP
rs1454565479 1162 dbSNP
rs188754867 1166 dbSNP
rs232748 1167 dbSNP
rs1417302308 1168 dbSNP
rs6063473 1180 dbSNP
rs1337298805 1181 dbSNP
rs1405147405 1182 dbSNP
rs1450149104 1184 dbSNP
rs758998529 1185 dbSNP
rs1327199013 1196 dbSNP
rs373766200 1199 dbSNP
rs964660637 1205 dbSNP
rs143855797 1206 dbSNP
rs984486038 1208 dbSNP
rs370697841 1219 dbSNP
rs1347194892 1220 dbSNP
rs556917753 1221 dbSNP
rs368080839 1229 dbSNP
rs1450214849 1242 dbSNP
rs948541978 1251 dbSNP
rs1263424580 1258 dbSNP
rs1025919292 1259 dbSNP
rs150683247 1261 dbSNP
rs796952709 1261 dbSNP
rs1192020409 1269 dbSNP
rs1368311097 1269 dbSNP
rs1239921233 1278 dbSNP
rs1350948381 1282 dbSNP
rs374143589 1291 dbSNP
rs774923315 1300 dbSNP
rs1269428982 1306 dbSNP
rs1481120372 1320 dbSNP
rs892951475 1321 dbSNP
rs1226074916 1322 dbSNP
rs544737575 1326 dbSNP
rs184633516 1335 dbSNP
rs537930125 1336 dbSNP
rs774569392 1346 dbSNP
rs534866321 1349 dbSNP
rs771118218 1350 dbSNP
rs1013465149 1351 dbSNP
rs893409284 1354 dbSNP
rs567555199 1365 dbSNP
rs978032744 1368 dbSNP
rs1382936713 1371 dbSNP
rs1405586767 1376 dbSNP
rs555608517 1398 dbSNP
rs1344110127 1402 dbSNP
rs200358143 1408 dbSNP
rs1156979514 1414 dbSNP
rs1456743150 1416 dbSNP
rs1350393655 1417 dbSNP
rs1204234883 1419 dbSNP
rs1281661159 1421 dbSNP
rs999105650 1422 dbSNP
rs903222837 1441 dbSNP
rs954274256 1458 dbSNP
rs1268116669 1461 dbSNP
rs76645558 1465 dbSNP
rs934070009 1466 dbSNP
rs192245223 1470 dbSNP
rs1364211487 1476 dbSNP
rs961598654 1477 dbSNP
rs773265842 1491 dbSNP
rs1038885166 1497 dbSNP
rs551764216 1498 dbSNP
rs1002505841 1499 dbSNP
rs906955372 1504 dbSNP
rs373894142 1512 dbSNP
rs1393707028 1513 dbSNP
rs909032386 1515 dbSNP
rs1335589015 1516 dbSNP
rs1237287453 1518 dbSNP
rs1022746773 1525 dbSNP
rs1361084841 1528 dbSNP
rs1013068402 1532 dbSNP
rs1290492972 1537 dbSNP
rs533215109 1538 dbSNP
rs780004419 1540 dbSNP
rs550135809 1546 dbSNP
rs1251099904 1547 dbSNP
rs1418304955 1551 dbSNP
rs867085209 1555 dbSNP
rs1179324149 1556 dbSNP
rs1387316053 1558 dbSNP
rs1445537440 1559 dbSNP
rs918957757 1562 dbSNP
rs1463563797 1564 dbSNP
rs1299274710 1573 dbSNP
rs372009948 1580 dbSNP
rs981039919 1587 dbSNP
rs971123491 1588 dbSNP
rs771990633 1592 dbSNP
rs1342805879 1593 dbSNP
rs1383988445 1604 dbSNP
rs1273980457 1606 dbSNP
rs1013100759 1608 dbSNP
rs566177389 1610 dbSNP
rs1228907440 1621 dbSNP
rs188386215 1627 dbSNP
rs112558817 1633 dbSNP
rs999140543 1636 dbSNP
rs6512610 1637 dbSNP
rs764261968 1640 dbSNP
rs1051096881 1643 dbSNP
rs998163532 1646 dbSNP
rs912547529 1648 dbSNP
rs899927606 1649 dbSNP
rs1336250259 1655 dbSNP
rs1463973022 1657 dbSNP
rs149463450 1659 dbSNP
rs941434972 1664 dbSNP
rs909079414 1665 dbSNP
rs1373020825 1669 dbSNP
rs1169039718 1674 dbSNP
rs111808574 1678 dbSNP
rs530841820 1680 dbSNP
rs1407366583 1681 dbSNP
rs563474465 1699 dbSNP
rs756192712 1700 dbSNP
rs929233055 1705 dbSNP
rs1295746160 1708 dbSNP
rs752764101 1719 dbSNP
rs1237498437 1720 dbSNP
rs919137413 1723 dbSNP
rs1391366845 1729 dbSNP
rs372648112 1731 dbSNP
rs544985706 1732 dbSNP
rs1324027528 1740 dbSNP
rs1202753045 1747 dbSNP
rs7263257 1752 dbSNP
rs915567881 1759 dbSNP
rs1187314673 1763 dbSNP
rs182442472 1770 dbSNP
rs13043106 1771 dbSNP
rs1344018383 1774 dbSNP
rs1295215208 1775 dbSNP
rs922433199 1776 dbSNP
rs1469618585 1777 dbSNP
rs1383816290 1778 dbSNP
rs1174661378 1780 dbSNP
rs1285979365 1781 dbSNP
rs1347306982 1782 dbSNP
rs1015815321 1787 dbSNP
rs74479463 1788 dbSNP
rs1289055456 1790 dbSNP
rs1397533259 1790 dbSNP
rs35699141 1790 dbSNP
rs540416166 1790 dbSNP
rs796422245 1790 dbSNP
rs1222684788 1793 dbSNP
rs1276311291 1798 dbSNP
rs991673161 1801 dbSNP
rs1255321104 1814 dbSNP
rs957134190 1816 dbSNP
rs1289895883 1821 dbSNP
rs1216818870 1824 dbSNP
rs1260317579 1825 dbSNP
rs573869318 1837 dbSNP
rs1358707106 1841 dbSNP
rs1040851605 1845 dbSNP
rs1033602161 1858 dbSNP
rs1270255592 1859 dbSNP
rs971115678 1870 dbSNP
rs117573130 1871 dbSNP
rs1410673267 1884 dbSNP
rs537308190 1890 dbSNP
rs1420027818 1892 dbSNP
rs1029889995 1902 dbSNP
rs1199768647 1905 dbSNP
rs1159408268 1907 dbSNP
rs1344196153 1932 dbSNP
rs1432243788 1932 dbSNP
rs1417324200 1949 dbSNP
rs35497359 1951 dbSNP
rs1023035641 1961 dbSNP
rs1365642008 1973 dbSNP
rs1012685926 1985 dbSNP
rs1428655454 1988 dbSNP
rs1404327034 1994 dbSNP
rs998425428 1997 dbSNP
rs1414111455 2000 dbSNP
rs1183275467 2003 dbSNP
rs1224095920 2004 dbSNP
rs957318226 2016 dbSNP
rs1351714015 2018 dbSNP
rs1032851434 2022 dbSNP
rs1292682745 2024 dbSNP
rs1490198610 2030 dbSNP
rs998604712 2035 dbSNP
rs899853980 2043 dbSNP
rs1040304606 2056 dbSNP
rs1176916133 2056 dbSNP
rs569047308 2057 dbSNP
rs1437495181 2059 dbSNP
rs1165077026 2069 dbSNP
rs1385355903 2077 dbSNP
rs1423427036 2082 dbSNP
rs1182805879 2086 dbSNP
rs1321544936 2088 dbSNP
rs6122876 2089 dbSNP
rs1006084523 2090 dbSNP
rs1272140624 2095 dbSNP
rs1297452201 2097 dbSNP
rs1374381095 2100 dbSNP
rs888504847 2101 dbSNP
rs910616803 2108 dbSNP
rs932765636 2109 dbSNP
rs1275727387 2112 dbSNP
rs1438839514 2115 dbSNP
rs1204423270 2116 dbSNP
rs1236802266 2123 dbSNP
rs11416444 2124 dbSNP
rs1185099539 2124 dbSNP
rs1248493709 2124 dbSNP
rs1280982175 2124 dbSNP
rs397798905 2124 dbSNP
rs1410530982 2126 dbSNP
rs986604977 2127 dbSNP
rs1397910012 2131 dbSNP
rs1226878508 2135 dbSNP
rs1048884582 2141 dbSNP
rs919972730 2148 dbSNP
rs1337674944 2150 dbSNP
rs929118462 2160 dbSNP
rs1038550559 2163 dbSNP
rs558216435 2166 dbSNP
rs940211022 2174 dbSNP
rs1045656088 2178 dbSNP
rs1378527231 2181 dbSNP
rs539801937 2185 dbSNP
rs756553490 2186 dbSNP
rs1349207328 2187 dbSNP
rs991136102 2191 dbSNP
rs1307768305 2196 dbSNP
rs1405897407 2197 dbSNP
rs981713462 2204 dbSNP
rs1326127134 2209 dbSNP
rs972032200 2214 dbSNP
rs566091597 2218 dbSNP
rs935750227 2223 dbSNP
rs1403309654 2224 dbSNP
rs1441549569 2230 dbSNP
rs549558794 2233 dbSNP
rs535954298 2234 dbSNP
rs1159274997 2243 dbSNP
rs1192885435 2253 dbSNP
rs1473503460 2259 dbSNP
rs1249565723 2277 dbSNP
rs774132153 2279 dbSNP
rs1176814865 2280 dbSNP
rs1181430776 2289 dbSNP
rs1413046398 2299 dbSNP
rs1320495235 2303 dbSNP
rs568070829 2309 dbSNP
rs957145036 2318 dbSNP
rs1488678301 2319 dbSNP
rs1276887639 2325 dbSNP
rs1248311525 2333 dbSNP
rs1032760530 2334 dbSNP
rs967567024 2342 dbSNP
rs1029816764 2357 dbSNP
rs998552157 2359 dbSNP
rs567426480 2380 dbSNP
rs977039795 2383 dbSNP
rs768208577 2388 dbSNP
rs967215138 2397 dbSNP
rs1268803720 2399 dbSNP
rs1230342758 2402 dbSNP
rs964320977 2402 dbSNP
rs1018718000 2406 dbSNP
rs1215179836 2408 dbSNP
rs1288242307 2426 dbSNP
rs760108927 2428 dbSNP
rs527848409 2437 dbSNP
rs137990978 2440 dbSNP
rs560772200 2449 dbSNP
rs1385887965 2450 dbSNP
rs1419191760 2460 dbSNP
rs898494019 2470 dbSNP
rs1367529562 2478 dbSNP
rs1348963508 2482 dbSNP
rs1320591513 2483 dbSNP
rs1038498723 2486 dbSNP
rs1280932427 2496 dbSNP
rs372214740 2498 dbSNP
rs111496658 2499 dbSNP
rs1045541285 2509 dbSNP
rs55677905 2510 dbSNP
rs894351804 2517 dbSNP
rs1055883623 2522 dbSNP
rs1449681979 2524 dbSNP
rs1183628385 2525 dbSNP
rs1426941812 2526 dbSNP
rs540680215 2538 dbSNP
rs935649769 2546 dbSNP
rs925595819 2552 dbSNP
rs1157052226 2561 dbSNP
rs1041511975 2562 dbSNP
rs945775976 2563 dbSNP
rs1293494092 2564 dbSNP
rs925606082 2566 dbSNP
rs1393516067 2597 dbSNP
rs922799271 2599 dbSNP
rs976884840 2601 dbSNP
rs1488257506 2604 dbSNP
rs769874727 2613 dbSNP
rs1239026760 2614 dbSNP
rs190568294 2620 dbSNP
rs1360999817 2624 dbSNP
rs139195963 2630 dbSNP
rs1210872901 2632 dbSNP
rs984542330 2643 dbSNP
rs1197484241 2646 dbSNP
rs1251026942 2655 dbSNP
rs775250297 2658 dbSNP
rs543995594 2659 dbSNP
rs1457139927 2673 dbSNP
rs1233509492 2677 dbSNP
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rs982328044 6192 dbSNP
rs139499090 6198 dbSNP
rs147352782 6199 dbSNP
rs538162805 6220 dbSNP
rs1226194828 6233 dbSNP
rs984024054 6239 dbSNP
rs576860772 6243 dbSNP
rs369526278 6244 dbSNP
rs1027630740 6251 dbSNP
rs1023584838 6257 dbSNP
rs1010809689 6258 dbSNP
rs376576986 6259 dbSNP
rs1471451720 6260 dbSNP
rs6012845 6265 dbSNP
rs1418924426 6269 dbSNP
rs1461117320 6269 dbSNP
rs1030664973 6276 dbSNP
rs1162820330 6280 dbSNP
rs1356333579 6289 dbSNP
rs142729247 6290 dbSNP
rs1003753413 6324 dbSNP
rs186547846 6327 dbSNP
rs1192501626 6331 dbSNP
rs1051950385 6350 dbSNP
rs1355738607 6352 dbSNP
rs374642807 6353 dbSNP
rs1045320198 6364 dbSNP
rs1286234162 6375 dbSNP
rs900659238 6376 dbSNP
rs1349599305 6377 dbSNP
rs536430589 6378 dbSNP
rs184028131 6379 dbSNP
rs1236708017 6386 dbSNP
rs942276513 6391 dbSNP
rs1482026612 6393 dbSNP
rs550967272 6395 dbSNP
rs907885723 6399 dbSNP
rs1048160626 6400 dbSNP
rs1472620844 6401 dbSNP
rs938794264 6407 dbSNP
rs1421746211 6408 dbSNP
rs1429138141 6415 dbSNP
rs1168021015 6416 dbSNP
rs1369315641 6417 dbSNP
rs1435872306 6418 dbSNP
rs1328340458 6420 dbSNP
rs78852220 6420 dbSNP
rs893491674 6421 dbSNP
rs1375165928 6422 dbSNP
rs1052078896 6428 dbSNP
rs1282003349 6431 dbSNP
rs551928495 6431 dbSNP
rs935086390 6431 dbSNP
rs1316845411 6434 dbSNP
rs1382164377 6435 dbSNP
rs1041191383 6441 dbSNP
rs1340022272 6441 dbSNP
rs1491178609 6441 dbSNP
rs922339633 6441 dbSNP
rs942576521 6442 dbSNP
rs928688321 6448 dbSNP
rs1208298962 6449 dbSNP
rs35509157 6450 dbSNP
rs1244112106 6463 dbSNP
rs980193827 6473 dbSNP
rs969239792 6475 dbSNP
rs1475861243 6483 dbSNP
rs778039347 6485 dbSNP
rs1188047458 6490 dbSNP
rs1329491854 6516 dbSNP
rs12624795 6518 dbSNP
rs752908752 6526 dbSNP
rs1392845085 6538 dbSNP
rs1174766974 6541 dbSNP
rs1424915701 6545 dbSNP
rs1413069929 6555 dbSNP
rs1320683000 6560 dbSNP
rs6012844 6567 dbSNP
rs1346669417 6581 dbSNP
rs1172680708 6582 dbSNP
rs1319363058 6587 dbSNP
rs952575901 6591 dbSNP
rs1236446509 6595 dbSNP
rs1243349197 6596 dbSNP
rs920602812 6605 dbSNP
rs1190862797 6608 dbSNP
rs1344200462 6608 dbSNP
rs989437511 6632 dbSNP
rs972049995 6635 dbSNP
rs1286048706 6638 dbSNP
rs565276099 6640 dbSNP
rs1208290487 6642 dbSNP
rs112058256 6643 dbSNP
rs1030679749 6651 dbSNP
rs999567788 6653 dbSNP
rs982592724 6661 dbSNP
rs954502225 6674 dbSNP
rs1279859597 6678 dbSNP
rs546584413 6679 dbSNP
rs1409149109 6686 dbSNP
rs1341483808 6687 dbSNP
rs191494850 6689 dbSNP
rs1268508708 6698 dbSNP
rs766094289 6710 dbSNP
rs995924229 6719 dbSNP
rs1442542590 6733 dbSNP
rs762769219 6735 dbSNP
rs750351241 6741 dbSNP
rs900711608 6742 dbSNP
rs1341626400 6743 dbSNP
rs1315413747 6752 dbSNP
rs1323638447 6756 dbSNP
rs1413299726 6760 dbSNP
rs1375285402 6772 dbSNP
rs537592490 6782 dbSNP
rs1281090863 6801 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' cgagcgcgAGUGCGCAGGGGGUc 5'
                  || : : ||||||| 
Target 5' uccccauaUCUUCUCUCCCCCAc 3'
 		4 - 26
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM4903825
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / PID14_NS
Location of target site NM_199129 | 3UTR | ACCACCUUCAGCCUAGCCUGUCCCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161237
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000557021.1 | 3UTR | CUUUCCCCAUAUCUUCUCUCCCCCACCUUUAUCG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
123 hsa-miR-4665-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT115350 IGF1R insulin like growth factor 1 receptor 2 8
MIRT144387 SF3B3 splicing factor 3b subunit 3 2 2
MIRT145421 ANKRD13B ankyrin repeat domain 13B 2 4
MIRT146684 MINK1 misshapen like kinase 1 2 2
MIRT178944 C11ORF57 chromosome 11 open reading frame 57 2 2
MIRT189772 CDADC1 cytidine and dCMP deaminase domain containing 1 2 2
MIRT238514 HNRNPAB heterogeneous nuclear ribonucleoprotein A/B 2 2
MIRT366308 GDI1 GDP dissociation inhibitor 1 2 4
MIRT375173 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 2
MIRT442321 WNT9B Wnt family member 9B 2 2
MIRT442581 HOXD9 homeobox D9 2 2
MIRT451170 PIN1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 2 2
MIRT451894 ILK integrin linked kinase 2 2
MIRT453620 SLC4A2 solute carrier family 4 member 2 2 2
MIRT454769 STOML3 stomatin like 3 2 2
MIRT455038 MEN1 menin 1 2 2
MIRT455151 SUV39H1 suppressor of variegation 3-9 homolog 1 2 2
MIRT456891 DDA1 DET1 and DDB1 associated 1 2 2
MIRT457201 THSD4 thrombospondin type 1 domain containing 4 2 2
MIRT457373 CAMK2A calcium/calmodulin dependent protein kinase II alpha 2 2
MIRT459190 RCE1 Ras converting CAAX endopeptidase 1 2 2
MIRT462580 MYL12A myosin light chain 12A 2 2
MIRT464669 UBE2V1 ubiquitin conjugating enzyme E2 V1 2 2
MIRT464753 UBE2N ubiquitin conjugating enzyme E2 N 2 2
MIRT464881 UBALD1 UBA like domain containing 1 2 2
MIRT465932 TMEM189-UBE2V1 TMEM189-UBE2V1 readthrough 2 2
MIRT466013 TMEM189 transmembrane protein 189 2 2
MIRT466905 STK38 serine/threonine kinase 38 2 10
MIRT468421 SETD1B SET domain containing 1B 2 2
MIRT468592 SERBP1 SERPINE1 mRNA binding protein 1 2 2
MIRT468853 RREB1 ras responsive element binding protein 1 2 2
MIRT468900 RPS6KA4 ribosomal protein S6 kinase A4 2 2
MIRT469189 RICTOR RPTOR independent companion of MTOR complex 2 2 2
MIRT469305 RGP1 RGP1 homolog, RAB6A GEF complex partner 1 2 2
MIRT469771 RAB15 RAB15, member RAS oncogene family 2 2
MIRT469934 PTPRF protein tyrosine phosphatase, receptor type F 2 2
MIRT470000 PTPLB 3-hydroxyacyl-CoA dehydratase 2 1 1
MIRT470585 POTEM POTE ankyrin domain family member M 2 2
MIRT470615 POTEG POTE ankyrin domain family member G 2 2
MIRT470932 PKM pyruvate kinase, muscle 2 2
MIRT472511 NACC1 nucleus accumbens associated 1 2 2
MIRT472843 MTHFR methylenetetrahydrofolate reductase 2 2
MIRT473298 MEX3A mex-3 RNA binding family member A 2 2
MIRT473951 LRRC58 leucine rich repeat containing 58 2 2
MIRT474336 KMT2D lysine methyltransferase 2D 2 2
MIRT474399 KLHL28 kelch like family member 28 2 8
MIRT476487 GATAD2A GATA zinc finger domain containing 2A 2 2
MIRT477597 EFNA3 ephrin A3 2 2
MIRT477857 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT479858 CCDC6 coiled-coil domain containing 6 2 2
MIRT480123 CALR calreticulin 2 2
MIRT480391 C19orf47 chromosome 19 open reading frame 47 2 2
MIRT480685 BRPF1 bromodomain and PHD finger containing 1 2 2
MIRT482326 AGO2 argonaute 2, RISC catalytic component 2 2
MIRT482513 ACTB actin beta 2 2
MIRT483244 CITED4 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4 2 4
MIRT483282 SLC35C2 solute carrier family 35 member C2 2 4
MIRT483381 SPATA6 spermatogenesis associated 6 2 4
MIRT483416 RHOXF2B Rhox homeobox family member 2B 2 2
MIRT483468 STMN3 stathmin 3 2 4
MIRT484178 SUMO1 small ubiquitin-like modifier 1 2 2
MIRT484460 DDX6 DEAD-box helicase 6 2 2
MIRT484515 POLD3 DNA polymerase delta 3, accessory subunit 2 2
MIRT484595 SIX3 SIX homeobox 3 2 6
MIRT484738 ABCC6 ATP binding cassette subfamily C member 6 2 4
MIRT485248 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT485592 FOSL1 FOS like 1, AP-1 transcription factor subunit 2 4
MIRT485912 PGPEP1 pyroglutamyl-peptidase I 2 4
MIRT485954 RTBDN retbindin 2 2
MIRT486597 METTL6 methyltransferase like 6 2 2
MIRT486807 NDOR1 NADPH dependent diflavin oxidoreductase 1 2 2
MIRT486972 STEAP3 STEAP3 metalloreductase 2 4
MIRT487364 C10orf54 V-set immunoregulatory receptor 2 2
MIRT488072 DLGAP3 DLG associated protein 3 2 4
MIRT488150 PRRC2B proline rich coiled-coil 2B 2 4
MIRT488454 B3GALNT2 beta-1,3-N-acetylgalactosaminyltransferase 2 2 2
MIRT489027 PRPF4B pre-mRNA processing factor 4B 2 2
MIRT489704 CALML3 calmodulin like 3 2 2
MIRT489757 GRINA glutamate ionotropic receptor NMDA type subunit associated protein 1 2 2
MIRT490015 PIEZO1 piezo type mechanosensitive ion channel component 1 2 2
MIRT490120 FN3K fructosamine 3 kinase 2 2
MIRT490187 PKNOX2 PBX/knotted 1 homeobox 2 2 2
MIRT490313 ANK1 ankyrin 1 2 4
MIRT490595 SLC47A1 solute carrier family 47 member 1 2 4
MIRT491133 GRWD1 glutamate rich WD repeat containing 1 2 2
MIRT493027 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 2
MIRT494199 CLIP2 CAP-Gly domain containing linker protein 2 2 2
MIRT495699 PADI1 peptidyl arginine deiminase 1 2 2
MIRT501149 SLC10A7 solute carrier family 10 member 7 2 6
MIRT501413 RAB11FIP4 RAB11 family interacting protein 4 2 2
MIRT501638 PHLDA3 pleckstrin homology like domain family A member 3 2 2
MIRT512047 DIRAS2 DIRAS family GTPase 2 2 4
MIRT519877 ZFP30 ZFP30 zinc finger protein 2 4
MIRT522598 MAP7D1 MAP7 domain containing 1 2 4
MIRT524787 BAG5 BCL2 associated athanogene 5 2 2
MIRT539158 AR androgen receptor 2 2
MIRT555901 ORMDL3 ORMDL sphingolipid biosynthesis regulator 3 2 2
MIRT562543 CCDC71L coiled-coil domain containing 71 like 2 4
MIRT568791 VPS37D VPS37D, ESCRT-I subunit 2 2
MIRT569568 PRELP proline and arginine rich end leucine rich repeat protein 2 2
MIRT570000 COL1A2 collagen type I alpha 2 chain 2 2
MIRT570183 RAP1GAP2 RAP1 GTPase activating protein 2 2 2
MIRT572990 RPP25 ribonuclease P and MRP subunit p25 2 2
MIRT574618 LPCAT3 lysophosphatidylcholine acyltransferase 3 2 2
MIRT615354 CCNF cyclin F 2 2
MIRT616091 HOXB5 homeobox B5 2 2
MIRT617658 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT619107 CD40LG CD40 ligand 2 2
MIRT621198 ARPC1B actin related protein 2/3 complex subunit 1B 2 2
MIRT628839 FAM151B family with sequence similarity 151 member B 2 2
MIRT635552 LEPREL1 prolyl 3-hydroxylase 2 2 2
MIRT635703 NMNAT2 nicotinamide nucleotide adenylyltransferase 2 2 2
MIRT646646 FNBP1 formin binding protein 1 2 2
MIRT654905 POMGNT1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) 2 2
MIRT655121 PHF7 PHD finger protein 7 2 2
MIRT659457 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 4
MIRT668952 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT684242 TBXA2R thromboxane A2 receptor 2 2
MIRT692701 MEAF6 MYST/Esa1 associated factor 6 2 2
MIRT694328 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT712137 TAOK1 TAO kinase 1 2 2
MIRT713672 SH3PXD2A SH3 and PX domains 2A 2 2
MIRT715741 HSD11B1L hydroxysteroid 11-beta dehydrogenase 1 like 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4665 Fluorouracil 3385 NSC19893 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-mir-4665 Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-mir-4665 Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-4665 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-4665-5p Platinum 23939 sensitive High Ovarian Cancer tissue
hsa-miR-4665-5p Dabrafenib 44462760 NSC764134 approved resistant High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-4665-5p Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-4665-5p Paclitaxel 36314 NSC125973 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-4665-5p Tamoxifen 2733525 NSC180973 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-4665-5p Fulvestrant 17756771 NSC719276 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-miR-4665-5p Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-4665-5p Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-4665-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-4665-5p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-4665-5p Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-4665-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-4665-5p Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-4665-5p Doxorubicin 31703 NSC123127 approved resistant cell line (HS578T)
hsa-miR-4665-5p Gemcitabine 60750 NSC613327 approved resistant cell line (Panc1-GR4)

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