pre-miRNA Information
pre-miRNA hsa-mir-1273h   
Genomic Coordinates chr16: 24203116 - 24203231
Description Homo sapiens miR-1273h stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-1273h-5p
Sequence 33| CUGGGAGGUCAAGGCUGCAGU |53
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1028034199 14 dbSNP
rs542383563 18 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TMEM184C   
Synonyms TMEM34
Description transmembrane protein 184C
Transcript NM_018241   
Expression
Putative miRNA Targets on TMEM184C
3'UTR of TMEM184C
(miRNA target sites are highlighted)
>TMEM184C|NM_018241|3'UTR
   1 ACAGTATGGAAAAGCAAACTGTGCAACTACTACATTATATCATTACCTGGTATCCCATGGATTTTGTGCTTGGGACAGAC
  81 CATAAATGATGGAAAATGTCAACACAAAAATAGCTGAAAGCCAGGTACAACTACTGCATTTATATATGTAAGTTTTGTAT
 161 ATCAAAAATAATTGGTCTAAATTTCCTAGACTTAGACTTGATTTCTTAACATTAGGGTATCGCATACTCAAATGGTAGAC
 241 AATGACCCCAACTAAATCTTCCTGATGTTACACTGCTTTATCAAGAGGATGGACTTTTTTTTTTTTGAGACAGACAGAGT
 321 CTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGCAATCTCGGGTCACTGCAAGCTCTGCCTCCCAAGTTCATGCCATTC
 401 TCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACCTGCCACCATGCCCAGCTAATTTTTTTTTTTTCAGTAGAGA
 481 CAGGGTCTCACCATGTTAGCCAGGATGGTCTTGATCTGACCTCGTGATCCGCCGACCTCGGCCTCCCAAAGTGCTGGAAT
 561 TACAGGCGTGAGCCACTGCGCCTGGCCAAGAATGGACATTTTTTAAAAAAACATCAGTACTTCCTACCACTGCTGCATGA
 641 GTATAATGCTCCGGAATTATCAGAAAGCATAATGCAGAAATACGAATTAGTGGAACTTAATCATGTGCCATATAAGCTTA
 721 CCTAACAAACAGTTATATCCCTATTCCTCAACTGAATGTCTTTCAATAAATAAGAATTTATCATTTATTTTCTGCAACTT
 801 TTTTATGTCTCATTCTTTAAACATTAAAAACCCTTAATATTTTAACAAAAATTTCTTGATTAGAGGCACAGTGAAAAAGA
 881 AGTCAAAAAAAAAAGTTCTACTTTTCATCAGTGCTATTAAAGGTGGCAGCAAATGTAAATCTTGGCTGAATGGTCTTAAT
 961 TACTCATTAAACCACAGTCAGAAAGACATATAGGTGCTATTTGGGAAAACTTTTTATTACCTAGGATGGGGTTTCTCTAA
1041 TTGCTAATCACAACCCCACTGGGTCATGTTTGACATTTTATAATGAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ugACG-UCGGAACUGGAGGGUc 5'
            ||| |||: || ||||||| 
Target 5' acTGCAAGCTCTG-CCTCCCAa 3'
367 - 387 162.00 -24.20
2
miRNA  3' ugaCGUC-GGAACUGGAGGGUc 5'
             || | ||| |:||||||| 
Target 5' tccGCCGACCTCGGCCTCCCAa 3'
528 - 549 162.00 -21.00
3
miRNA  3' ugACGUCGGAACUGGAGGGUc 5'
            | | ||||  :||||||| 
Target 5' tcTCCTGCCTCAGCCTCCCAa 3'
399 - 419 159.00 -20.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30103873 43 COSMIC
COSN8490205 47 COSMIC
COSN30132485 60 COSMIC
COSN21414431 131 COSMIC
COSN30694439 157 COSMIC
COSN1289144 243 COSMIC
COSN27269298 307 COSMIC
COSN1997907 358 COSMIC
COSN29108022 895 COSMIC
COSN1997909 958 COSMIC
COSN5054179 1097 COSMIC
COSN16522644 1201 COSMIC
COSN5152678 1203 COSMIC
COSN19468400 1325 COSMIC
COSN28043863 1927 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs199963604 3 dbSNP
rs767942054 3 dbSNP
rs750893340 4 dbSNP
rs919454111 4 dbSNP
rs1361356547 8 dbSNP
rs776788811 14 dbSNP
rs1223427806 20 dbSNP
rs748130288 21 dbSNP
rs1487467373 22 dbSNP
rs770089016 24 dbSNP
rs773349724 27 dbSNP
rs1423709052 28 dbSNP
rs763135584 29 dbSNP
rs767353637 38 dbSNP
rs573717384 58 dbSNP
rs1221330600 64 dbSNP
rs1265163595 73 dbSNP
rs142411350 76 dbSNP
rs951665464 77 dbSNP
rs888030127 82 dbSNP
rs111405235 84 dbSNP
rs777828673 90 dbSNP
rs948693393 91 dbSNP
rs1390307779 93 dbSNP
rs1298528531 96 dbSNP
rs1044434852 114 dbSNP
rs1358508611 121 dbSNP
rs556035175 129 dbSNP
rs1158023060 133 dbSNP
rs576178097 136 dbSNP
rs1242028304 139 dbSNP
rs1485204625 148 dbSNP
rs1196258312 149 dbSNP
rs544887206 158 dbSNP
rs749323989 159 dbSNP
rs1031454385 160 dbSNP
rs1194794602 161 dbSNP
rs1480203447 173 dbSNP
rs183379807 189 dbSNP
rs981246904 199 dbSNP
rs1427611027 208 dbSNP
rs527602931 209 dbSNP
rs934535802 214 dbSNP
rs1021457936 217 dbSNP
rs1343331864 222 dbSNP
rs574380456 223 dbSNP
rs1298533934 229 dbSNP
rs1006960600 238 dbSNP
rs560098819 243 dbSNP
rs932615813 255 dbSNP
rs1297496780 259 dbSNP
rs17023581 276 dbSNP
rs1404289260 277 dbSNP
rs1170247914 280 dbSNP
rs1465138209 286 dbSNP
rs1423859942 295 dbSNP
rs1479000727 295 dbSNP
rs33965102 295 dbSNP
rs397827284 295 dbSNP
rs1261564808 301 dbSNP
rs79915975 306 dbSNP
rs891160693 306 dbSNP
rs1443448316 307 dbSNP
rs1284797814 308 dbSNP
rs772354639 312 dbSNP
rs1222681881 316 dbSNP
rs972447767 318 dbSNP
rs541754789 326 dbSNP
rs1219459684 329 dbSNP
rs1316297520 335 dbSNP
rs1287114824 338 dbSNP
rs1490287692 350 dbSNP
rs1448515925 352 dbSNP
rs568698457 354 dbSNP
rs561001317 355 dbSNP
rs909454815 360 dbSNP
rs28676674 363 dbSNP
rs1463674908 364 dbSNP
rs1422499220 365 dbSNP
rs959612918 369 dbSNP
rs1044774617 379 dbSNP
rs1370680340 379 dbSNP
rs1186117692 386 dbSNP
rs1460922837 388 dbSNP
rs1238794944 394 dbSNP
rs928683623 398 dbSNP
rs938697194 406 dbSNP
rs1405919201 418 dbSNP
rs1053111308 420 dbSNP
rs1257706090 429 dbSNP
rs1228646490 444 dbSNP
rs891883624 446 dbSNP
rs1358267142 454 dbSNP
rs1282346377 458 dbSNP
rs1244063374 460 dbSNP
rs1377560723 460 dbSNP
rs147874653 470 dbSNP
rs1443975419 472 dbSNP
rs1399050832 474 dbSNP
rs1022628003 476 dbSNP
rs1323860519 476 dbSNP
rs552911200 478 dbSNP
rs1161828573 482 dbSNP
rs1444497306 485 dbSNP
rs1381504149 486 dbSNP
rs141450214 495 dbSNP
rs763554826 513 dbSNP
rs889699880 514 dbSNP
rs1232500602 517 dbSNP
rs554536520 519 dbSNP
rs1019962435 524 dbSNP
rs866023066 525 dbSNP
rs1287390412 531 dbSNP
rs1277215698 532 dbSNP
rs1354278045 533 dbSNP
rs754183257 535 dbSNP
rs993835879 536 dbSNP
rs1025361534 540 dbSNP
rs952473324 541 dbSNP
rs984952677 548 dbSNP
rs374669898 550 dbSNP
rs1359423279 552 dbSNP
rs932563138 557 dbSNP
rs1361701579 558 dbSNP
rs909405237 558 dbSNP
rs970704546 559 dbSNP
rs1161030216 561 dbSNP
rs1129239 563 dbSNP
rs551652377 564 dbSNP
rs1417926578 567 dbSNP
rs980353412 568 dbSNP
rs143579472 569 dbSNP
rs938659302 580 dbSNP
rs762343126 581 dbSNP
rs1488522216 587 dbSNP
rs1231184986 591 dbSNP
rs1214441130 597 dbSNP
rs913312026 606 dbSNP
rs765934672 608 dbSNP
rs1042854008 610 dbSNP
rs186661068 611 dbSNP
rs996041789 612 dbSNP
rs1273923714 618 dbSNP
rs1048589586 619 dbSNP
rs1442744727 628 dbSNP
rs1300582952 630 dbSNP
rs879163681 637 dbSNP
rs895348659 653 dbSNP
rs556185435 654 dbSNP
rs576059654 671 dbSNP
rs901093615 675 dbSNP
rs1002555319 684 dbSNP
rs971027507 684 dbSNP
rs993824106 685 dbSNP
rs1264974625 687 dbSNP
rs1191248368 690 dbSNP
rs1031803062 691 dbSNP
rs1238012109 692 dbSNP
rs1408949390 695 dbSNP
rs955817527 707 dbSNP
rs1440249123 708 dbSNP
rs773832043 718 dbSNP
rs1262111926 719 dbSNP
rs1361825300 724 dbSNP
rs190919721 724 dbSNP
rs572453421 724 dbSNP
rs1326449904 727 dbSNP
rs1005336302 728 dbSNP
rs914393264 731 dbSNP
rs1357566281 733 dbSNP
rs1446857365 741 dbSNP
rs1336163561 745 dbSNP
rs545160408 751 dbSNP
rs1466282142 758 dbSNP
rs779135243 759 dbSNP
rs1168218296 765 dbSNP
rs1426074787 765 dbSNP
rs953904887 779 dbSNP
rs1414419766 795 dbSNP
rs1183591825 797 dbSNP
rs1481988794 799 dbSNP
rs1241914729 800 dbSNP
rs1198743172 807 dbSNP
rs1335547333 808 dbSNP
rs1255794877 813 dbSNP
rs748177274 816 dbSNP
rs912495697 819 dbSNP
rs1286263652 832 dbSNP
rs758460923 838 dbSNP
rs1357507028 841 dbSNP
rs1214420344 847 dbSNP
rs944004007 849 dbSNP
rs1401928565 854 dbSNP
rs1271126564 856 dbSNP
rs1459295134 859 dbSNP
rs1314405321 863 dbSNP
rs1199313093 880 dbSNP
rs1242640323 883 dbSNP
rs1459886622 884 dbSNP
rs1402683919 885 dbSNP
rs1447648209 885 dbSNP
rs972763902 885 dbSNP
rs1189548920 886 dbSNP
rs970230187 891 dbSNP
rs918620866 892 dbSNP
rs1350326356 893 dbSNP
rs1474956941 895 dbSNP
rs980682554 901 dbSNP
rs1384558883 902 dbSNP
rs931405573 902 dbSNP
rs1178675528 906 dbSNP
rs1048537209 910 dbSNP
rs1235962828 912 dbSNP
rs533739804 915 dbSNP
rs1425289020 916 dbSNP
rs1488605595 917 dbSNP
rs1266341249 920 dbSNP
rs1224262912 936 dbSNP
rs895296191 941 dbSNP
rs1291738772 943 dbSNP
rs759270283 947 dbSNP
rs1465847733 952 dbSNP
rs1046654521 956 dbSNP
rs948220235 956 dbSNP
rs558489523 958 dbSNP
rs1035912088 961 dbSNP
rs1394735339 964 dbSNP
rs1295021387 965 dbSNP
rs1002913003 967 dbSNP
rs1422548676 967 dbSNP
rs1336717901 973 dbSNP
rs960314823 976 dbSNP
rs1430429574 977 dbSNP
rs1031328100 984 dbSNP
rs1420979776 984 dbSNP
rs988769968 989 dbSNP
rs913259827 992 dbSNP
rs1180485897 997 dbSNP
rs1433356567 1009 dbSNP
rs183181161 1011 dbSNP
rs774034717 1011 dbSNP
rs767366065 1022 dbSNP
rs527502856 1030 dbSNP
rs978844574 1031 dbSNP
rs953854558 1043 dbSNP
rs1356476483 1053 dbSNP
rs985270459 1055 dbSNP
rs1019452836 1060 dbSNP
rs1312954100 1063 dbSNP
rs1342967032 1085 dbSNP
rs1202317275 1086 dbSNP
rs552213251 1086 dbSNP
rs1256748139 1087 dbSNP
rs1344711181 1088 dbSNP
rs965323076 1088 dbSNP
rs540903909 1096 dbSNP
rs781009493 1096 dbSNP
rs918581260 1102 dbSNP
rs911297976 1106 dbSNP
rs2718447 1108 dbSNP
rs984179524 1111 dbSNP
rs528561076 1112 dbSNP
rs1428952874 1114 dbSNP
rs1194869624 1115 dbSNP
rs1041308551 1118 dbSNP
rs1477912486 1128 dbSNP
rs1483649275 1129 dbSNP
rs916679821 1132 dbSNP
rs901086847 1137 dbSNP
rs929900165 1143 dbSNP
rs1278550325 1151 dbSNP
rs769616202 1154 dbSNP
rs935585706 1161 dbSNP
rs1046750185 1171 dbSNP
rs1317611049 1174 dbSNP
rs1396091268 1175 dbSNP
rs888085757 1180 dbSNP
rs1334131648 1184 dbSNP
rs1403810126 1184 dbSNP
rs1403490710 1188 dbSNP
rs1423929927 1196 dbSNP
rs1171784669 1197 dbSNP
rs74673419 1201 dbSNP
rs891437649 1201 dbSNP
rs188156530 1203 dbSNP
rs1461007494 1205 dbSNP
rs1258988091 1206 dbSNP
rs1200277142 1207 dbSNP
rs748996239 1207 dbSNP
rs904948694 1209 dbSNP
rs1001705919 1211 dbSNP
rs1006635843 1212 dbSNP
rs1312226760 1213 dbSNP
rs1400535181 1227 dbSNP
rs1451319318 1227 dbSNP
rs1400768061 1229 dbSNP
rs1333011504 1231 dbSNP
rs1411990038 1233 dbSNP
rs1019434448 1250 dbSNP
rs1329625798 1252 dbSNP
rs1235476593 1253 dbSNP
rs542663140 1255 dbSNP
rs1036309995 1257 dbSNP
rs1181793106 1258 dbSNP
rs1444134596 1261 dbSNP
rs1239004568 1262 dbSNP
rs148040019 1266 dbSNP
rs1436298688 1283 dbSNP
rs1271955647 1287 dbSNP
rs1210239069 1289 dbSNP
rs1358335816 1289 dbSNP
rs972655853 1291 dbSNP
rs1349809866 1292 dbSNP
rs1025998917 1296 dbSNP
rs952661018 1305 dbSNP
rs1439495741 1307 dbSNP
rs989052524 1311 dbSNP
rs531732181 1315 dbSNP
rs568099165 1317 dbSNP
rs984129004 1317 dbSNP
rs551914221 1319 dbSNP
rs536135295 1324 dbSNP
rs1488493433 1327 dbSNP
rs1424091725 1328 dbSNP
rs536354734 1338 dbSNP
rs1266303693 1339 dbSNP
rs968649177 1359 dbSNP
rs1468754103 1360 dbSNP
rs1434582392 1363 dbSNP
rs979176403 1371 dbSNP
rs1199272155 1379 dbSNP
rs1490794658 1379 dbSNP
rs911300188 1401 dbSNP
rs942818911 1406 dbSNP
rs565459811 1409 dbSNP
rs1221749081 1411 dbSNP
rs976593913 1415 dbSNP
rs1354339660 1425 dbSNP
rs1198899136 1437 dbSNP
rs527937792 1446 dbSNP
rs1221604715 1450 dbSNP
rs1362729535 1451 dbSNP
rs1349460656 1453 dbSNP
rs1275122926 1454 dbSNP
rs969457320 1463 dbSNP
rs748726787 1471 dbSNP
rs755798601 1471 dbSNP
rs1301679680 1486 dbSNP
rs548102622 1496 dbSNP
rs1361762437 1515 dbSNP
rs922457679 1519 dbSNP
rs1363080710 1525 dbSNP
rs1407509645 1532 dbSNP
rs193086766 1534 dbSNP
rs929809861 1535 dbSNP
rs1426863561 1537 dbSNP
rs375813154 1541 dbSNP
rs1246895809 1546 dbSNP
rs536198480 1560 dbSNP
rs1213003422 1566 dbSNP
rs537915071 1572 dbSNP
rs548131344 1573 dbSNP
rs1278885386 1580 dbSNP
rs1045165744 1581 dbSNP
rs915489592 1583 dbSNP
rs947017100 1585 dbSNP
rs1223314629 1603 dbSNP
rs1341648573 1607 dbSNP
rs904940799 1613 dbSNP
rs1272483845 1624 dbSNP
rs1042703070 1631 dbSNP
rs879078259 1645 dbSNP
rs1388767488 1656 dbSNP
rs1003729684 1667 dbSNP
rs1335254456 1668 dbSNP
rs1057288085 1669 dbSNP
rs1006580590 1672 dbSNP
rs1175401607 1673 dbSNP
rs1238150569 1684 dbSNP
rs1041214643 1686 dbSNP
rs549534858 1694 dbSNP
rs1010361750 1706 dbSNP
rs1221416494 1713 dbSNP
rs566244104 1714 dbSNP
rs141717815 1721 dbSNP
rs538339482 1723 dbSNP
rs539655428 1727 dbSNP
rs968974484 1735 dbSNP
rs1005510884 1740 dbSNP
rs1249128363 1765 dbSNP
rs1298374891 1766 dbSNP
rs1213260362 1776 dbSNP
rs1456065853 1777 dbSNP
rs1023632203 1782 dbSNP
rs1382677633 1789 dbSNP
rs761253368 1800 dbSNP
rs79106867 1803 dbSNP
rs1018715111 1804 dbSNP
rs1367102980 1810 dbSNP
rs964146972 1820 dbSNP
rs977212197 1822 dbSNP
rs1465942135 1837 dbSNP
rs111342507 1841 dbSNP
rs1168075978 1844 dbSNP
rs1409249407 1859 dbSNP
rs1294338907 1860 dbSNP
rs371977887 1872 dbSNP
rs1184872383 1878 dbSNP
rs1442294027 1889 dbSNP
rs951155622 1892 dbSNP
rs982620775 1894 dbSNP
rs1242135353 1902 dbSNP
rs915453189 1904 dbSNP
rs988719969 1904 dbSNP
rs909793377 1912 dbSNP
rs1253389676 1913 dbSNP
rs1202897930 1915 dbSNP
rs946964510 1926 dbSNP
rs1293198762 1932 dbSNP
rs1248241070 1934 dbSNP
rs868226096 1935 dbSNP
rs1333495245 1936 dbSNP
rs1377494155 1938 dbSNP
rs1314469115 1941 dbSNP
rs1392120033 1944 dbSNP
rs746029956 1946 dbSNP
rs941316808 1948 dbSNP
rs1245174354 1953 dbSNP
rs2718448 1969 dbSNP
rs1441260396 1980 dbSNP
rs926312869 1985 dbSNP
rs1350376665 1993 dbSNP
rs1165457692 1994 dbSNP
rs939044928 1996 dbSNP
rs558382779 1998 dbSNP
rs1384011455 1999 dbSNP
rs1056100260 2020 dbSNP
rs554400683 2032 dbSNP
rs1420455651 2034 dbSNP
rs892222334 2036 dbSNP
rs1175822686 2037 dbSNP
rs1315731803 2046 dbSNP
rs114821776 2049 dbSNP
rs184191217 2063 dbSNP
rs1238277158 2065 dbSNP
rs1357941977 2070 dbSNP
rs1041904722 2080 dbSNP
rs1239897573 2093 dbSNP
rs904766073 2095 dbSNP
rs187365044 2100 dbSNP
rs1000883621 2110 dbSNP
rs1018540639 2113 dbSNP
rs1222984163 2114 dbSNP
rs993975346 2116 dbSNP
rs192396319 2117 dbSNP
rs1402965753 2118 dbSNP
rs1364912952 2119 dbSNP
rs1288909090 2127 dbSNP
rs1254774535 2128 dbSNP
rs1361688373 2135 dbSNP
rs998200875 2142 dbSNP
rs1433414579 2144 dbSNP
rs1005455218 2146 dbSNP
rs1029718572 2149 dbSNP
rs1202068366 2161 dbSNP
rs1023575072 2167 dbSNP
rs1268851650 2167 dbSNP
rs951476856 2167 dbSNP
rs1205769811 2172 dbSNP
rs1165995137 2173 dbSNP
rs184767815 2185 dbSNP
rs1464288262 2189 dbSNP
rs189403023 2194 dbSNP
rs1401138932 2210 dbSNP
rs957004486 2218 dbSNP
rs1301006480 2220 dbSNP
rs1221497582 2221 dbSNP
rs1344775747 2228 dbSNP
rs988280170 2229 dbSNP
rs1383405037 2230 dbSNP
rs1382054417 2241 dbSNP
rs527848827 2244 dbSNP
rs1022409141 2246 dbSNP
rs79714615 2248 dbSNP
rs1407881165 2260 dbSNP
rs561537980 2261 dbSNP
rs981068828 2269 dbSNP
rs576455746 2270 dbSNP
rs926561076 2274 dbSNP
rs1178992600 2276 dbSNP
rs1294631505 2277 dbSNP
rs938979404 2286 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ugACG-UCGGAACUGGAGGGUc 5'
            ||| |||: || ||||||| 
Target 5' acUGCAAGCUCUG-CCUCCCAa 3'
3 - 23
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000296582.3 | 3UTR | UCACUGCAAGCUCUGCCUCCCAAGUUCAUGCCAUUCUCCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
494 hsa-miR-1273h-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT074355 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT100721 TJAP1 tight junction associated protein 1 2 2
MIRT115545 MAZ MYC associated zinc finger protein 2 2
MIRT124982 XIAP X-linked inhibitor of apoptosis 2 4
MIRT139911 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT177183 ARL5B ADP ribosylation factor like GTPase 5B 2 4
MIRT187994 MBD6 methyl-CpG binding domain protein 6 2 2
MIRT207410 MAT2A methionine adenosyltransferase 2A 2 6
MIRT241928 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT260110 KLHL21 kelch like family member 21 2 2
MIRT260358 XRCC6 X-ray repair cross complementing 6 2 6
MIRT266428 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT294663 ZNF548 zinc finger protein 548 2 2
MIRT351039 PLEKHB2 pleckstrin homology domain containing B2 2 2
MIRT379943 PRRG4 proline rich and Gla domain 4 2 2
MIRT398983 KAT7 lysine acetyltransferase 7 2 2
MIRT441465 BEST3 bestrophin 3 2 2
MIRT446750 ZNF491 zinc finger protein 491 2 2
MIRT449224 RAD51B RAD51 paralog B 2 2
MIRT450623 AQR aquarius intron-binding spliceosomal factor 2 2
MIRT451090 ZNF584 zinc finger protein 584 2 2
MIRT451558 CIAPIN1 cytokine induced apoptosis inhibitor 1 2 2
MIRT451736 CES3 carboxylesterase 3 2 2
MIRT452411 QDPR quinoid dihydropteridine reductase 2 2
MIRT452559 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT452851 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT452922 DISC1 disrupted in schizophrenia 1 2 2
MIRT453043 TANGO2 transport and golgi organization 2 homolog 2 4
MIRT453097 HOXC4 homeobox C4 2 2
MIRT453297 ZNF394 zinc finger protein 394 2 2
MIRT453593 ZNF557 zinc finger protein 557 2 2
MIRT453787 KBTBD12 kelch repeat and BTB domain containing 12 2 2
MIRT453987 CECR1 adenosine deaminase 2 2 2
MIRT454083 TMEM209 transmembrane protein 209 2 2
MIRT454652 FBXL18 F-box and leucine rich repeat protein 18 2 2
MIRT454753 PFKFB3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 2 2
MIRT455311 TTLL9 tubulin tyrosine ligase like 9 2 2
MIRT456468 SERAC1 serine active site containing 1 2 2
MIRT456554 TOMM20 translocase of outer mitochondrial membrane 20 2 2
MIRT456716 TMEM239 transmembrane protein 239 2 4
MIRT456796 SIGLEC14 sialic acid binding Ig like lectin 14 2 2
MIRT457487 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457999 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT458130 TLCD2 TLC domain containing 2 2 2
MIRT459027 ZNF490 zinc finger protein 490 2 4
MIRT459119 FADS6 fatty acid desaturase 6 2 2
MIRT459315 HAVCR2 hepatitis A virus cellular receptor 2 2 2
MIRT459385 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT459412 FAM83B family with sequence similarity 83 member B 2 2
MIRT459974 RFT1 RFT1 homolog 2 2
MIRT460480 FAM105A family with sequence similarity 105 member A 2 6
MIRT460586 FEM1A fem-1 homolog A 2 2
MIRT460920 NOA1 nitric oxide associated 1 2 4
MIRT461072 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT461590 DPH2 DPH2 homolog 2 2
MIRT461854 ZNF317 zinc finger protein 317 2 2
MIRT462176 ACADL acyl-CoA dehydrogenase, long chain 2 2
MIRT462446 GCDH glutaryl-CoA dehydrogenase 2 2
MIRT463854 WNT7B Wnt family member 7B 2 2
MIRT464310 UST uronyl 2-sulfotransferase 2 2
MIRT464815 UBE2B ubiquitin conjugating enzyme E2 B 2 2
MIRT465453 TOR2A torsin family 2 member A 2 2
MIRT466073 TMEM184C transmembrane protein 184C 2 2
MIRT466514 TBXA2R thromboxane A2 receptor 2 2
MIRT467072 SRRD SRR1 domain containing 2 2
MIRT469551 RARA retinoic acid receptor alpha 2 2
MIRT469741 RAB2B RAB2B, member RAS oncogene family 2 2
MIRT470759 PNPLA6 patatin like phospholipase domain containing 6 2 2
MIRT470875 PLXND1 plexin D1 2 2
MIRT470976 PITPNA phosphatidylinositol transfer protein alpha 2 2
MIRT471048 PIM3 Pim-3 proto-oncogene, serine/threonine kinase 2 2
MIRT471215 PHAX phosphorylated adaptor for RNA export 2 2
MIRT471246 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT471286 PGAM4 phosphoglycerate mutase family member 4 2 2
MIRT471467 PDE7B phosphodiesterase 7B 2 2
MIRT473069 MORN4 MORN repeat containing 4 2 4
MIRT473989 LRRC20 leucine rich repeat containing 20 2 2
MIRT474518 KLHDC8A kelch domain containing 8A 2 2
MIRT474990 KANSL1 KAT8 regulatory NSL complex subunit 1 2 2
MIRT475547 HNRNPUL1 heterogeneous nuclear ribonucleoprotein U like 1 2 2
MIRT476350 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT477298 EPHB2 EPH receptor B2 2 2
MIRT477933 DPM2 dolichyl-phosphate mannosyltransferase subunit 2, regulatory 2 2
MIRT478282 DDX19A DEAD-box helicase 19A 2 4
MIRT478472 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT478559 CTNND1 catenin delta 1 2 2
MIRT478618 CTDNEP1 CTD nuclear envelope phosphatase 1 2 2
MIRT478834 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT479007 COL5A1 collagen type V alpha 1 chain 2 2
MIRT479166 CLSPN claspin 2 2
MIRT482454 ADAR adenosine deaminase, RNA specific 2 4
MIRT483019 KHSRP KH-type splicing regulatory protein 2 4
MIRT483798 CYP2W1 cytochrome P450 family 2 subfamily W member 1 2 6
MIRT486087 SLC7A5 solute carrier family 7 member 5 2 4
MIRT486304 SIPA1 signal-induced proliferation-associated 1 2 2
MIRT486490 MYH11 myosin heavy chain 11 2 2
MIRT486881 TSPYL4 TSPY like 4 2 2
MIRT487125 NCOR2 nuclear receptor corepressor 2 2 2
MIRT487542 TM6SF2 transmembrane 6 superfamily member 2 2 4
MIRT487676 B3GALT5 beta-1,3-galactosyltransferase 5 2 4
MIRT489251 TTLL1 tubulin tyrosine ligase like 1 2 4
MIRT489276 RBM8A RNA binding motif protein 8A 2 8
MIRT489496 CRLF3 cytokine receptor like factor 3 2 4
MIRT489571 SSBP2 single stranded DNA binding protein 2 2 2
MIRT489694 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT490166 TMEM63C transmembrane protein 63C 2 2
MIRT491199 MLLT1 MLLT1, super elongation complex subunit 2 4
MIRT491260 DHX40 DEAH-box helicase 40 2 2
MIRT491385 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT491548 YAE1D1 Yae1 domain containing 1 2 2
MIRT492722 PHF12 PHD finger protein 12 2 2
MIRT493866 FAM73B mitoguardin 2 2 4
MIRT494549 BAK1 BCL2 antagonist/killer 1 2 2
MIRT498586 KRT8 keratin 8 2 2
MIRT498722 SNTN sentan, cilia apical structure protein 2 6
MIRT499982 HIST1H2BD histone cluster 1 H2B family member d 2 4
MIRT503414 SLC25A45 solute carrier family 25 member 45 2 6
MIRT508491 FTO FTO, alpha-ketoglutarate dependent dioxygenase 2 2
MIRT508877 METTL14 methyltransferase like 14 2 2
MIRT509622 RRP7A ribosomal RNA processing 7 homolog A 2 4
MIRT510104 IRAK3 interleukin 1 receptor associated kinase 3 2 8
MIRT510139 PDGFRA platelet derived growth factor receptor alpha 2 4
MIRT510353 ZNF703 zinc finger protein 703 2 6
MIRT510620 TMEM167A transmembrane protein 167A 2 4
MIRT510786 SF3B3 splicing factor 3b subunit 3 2 6
MIRT511021 NRF1 nuclear respiratory factor 1 2 2
MIRT513925 GHITM growth hormone inducible transmembrane protein 2 2
MIRT514342 DNAH17 dynein axonemal heavy chain 17 2 4
MIRT515015 SUMF2 sulfatase modifying factor 2 2 2
MIRT515246 DUSP28 dual specificity phosphatase 28 2 2
MIRT516202 RPP30 ribonuclease P/MRP subunit p30 2 2
MIRT516435 ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 motif 4 2 4
MIRT516666 ZNF860 zinc finger protein 860 2 4
MIRT518373 ZNF250 zinc finger protein 250 2 2
MIRT518930 LSG1 large 60S subunit nuclear export GTPase 1 2 2
MIRT519676 ZNF70 zinc finger protein 70 2 2
MIRT519902 ZFAND4 zinc finger AN1-type containing 4 2 4
MIRT519945 ZCCHC8 zinc finger CCHC-type containing 8 2 2
MIRT520321 UBXN2A UBX domain protein 2A 2 2
MIRT520606 TMEM41B transmembrane protein 41B 2 2
MIRT520663 TMEM11 transmembrane protein 11 2 2
MIRT520852 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT521443 RAD51 RAD51 recombinase 2 2
MIRT521671 PRKAR2A protein kinase cAMP-dependent type II regulatory subunit alpha 2 2
MIRT522281 NKAP NFKB activating protein 2 2
MIRT522333 NCKIPSD NCK interacting protein with SH3 domain 2 8
MIRT522535 MED28 mediator complex subunit 28 2 6
MIRT523478 GNG4 G protein subunit gamma 4 2 2
MIRT523672 FOPNL FGFR1OP N-terminal like 2 2
MIRT523715 FBXW2 F-box and WD repeat domain containing 2 2 4
MIRT523867 ESCO2 establishment of sister chromatid cohesion N-acetyltransferase 2 2 4
MIRT524043 DNAJC8 DnaJ heat shock protein family (Hsp40) member C8 2 2
MIRT524167 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT524928 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT526825 PHC1 polyhomeotic homolog 1 2 2
MIRT531017 TDGF1P3 teratocarcinoma-derived growth factor 1 pseudogene 3 2 2
MIRT536085 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT540681 BMP3 bone morphogenetic protein 3 2 2
MIRT541708 TMEM33 transmembrane protein 33 2 2
MIRT541755 KLF8 Kruppel like factor 8 2 2
MIRT541888 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT545714 SPTLC2 serine palmitoyltransferase long chain base subunit 2 2 2
MIRT559054 C19orf47 chromosome 19 open reading frame 47 2 4
MIRT561748 PLAGL2 PLAG1 like zinc finger 2 2 2
MIRT562365 ETV3 ETS variant 3 2 2
MIRT562821 GCFC2 GC-rich sequence DNA-binding factor 2 2 2
MIRT562900 DNAH10OS dynein axonemal heavy chain 10 opposite strand 2 2
MIRT564452 SLC35E2 solute carrier family 35 member E2 2 5
MIRT569111 ONECUT3 one cut homeobox 3 2 2
MIRT569224 SUSD1 sushi domain containing 1 2 2
MIRT570271 ARPC3 actin related protein 2/3 complex subunit 3 2 2
MIRT570498 TFIP11 tuftelin interacting protein 11 2 2
MIRT570844 GPRC5C G protein-coupled receptor class C group 5 member C 2 2
MIRT571311 TPCN2 two pore segment channel 2 2 2
MIRT572077 EXOC8 exocyst complex component 8 2 2
MIRT572116 DNAJC24 DnaJ heat shock protein family (Hsp40) member C24 2 2
MIRT573054 TRIB1 tribbles pseudokinase 1 2 2
MIRT573483 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT573656 HES6 hes family bHLH transcription factor 6 2 2
MIRT574343 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT576494 Slc35e2 solute carrier family 35, member E2 2 4
MIRT608033 UBLCP1 ubiquitin like domain containing CTD phosphatase 1 2 2
MIRT611326 NANOS1 nanos C2HC-type zinc finger 1 2 2
MIRT613660 KIAA1210 KIAA1210 2 2
MIRT615638 ATF6 activating transcription factor 6 2 2
MIRT618573 RRAD RRAD, Ras related glycolysis inhibitor and calcium channel regulator 2 2
MIRT618865 MBL2 mannose binding lectin 2 2 2
MIRT618962 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT619172 SLC16A4 solute carrier family 16 member 4 2 2
MIRT620298 AQP6 aquaporin 6 2 2
MIRT620683 RFTN2 raftlin family member 2 2 2
MIRT621637 UBXN2B UBX domain protein 2B 2 2
MIRT621993 STK4 serine/threonine kinase 4 2 2
MIRT622421 NUDT19 nudix hydrolase 19 2 2
MIRT622804 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 4
MIRT624786 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 2
MIRT624968 ZNF665 zinc finger protein 665 2 4
MIRT625479 SMAD9 SMAD family member 9 2 2
MIRT626594 ACAA2 acetyl-CoA acyltransferase 2 2 4
MIRT626708 TRIM65 tripartite motif containing 65 2 2
MIRT626975 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT627489 STRIP2 striatin interacting protein 2 2 2
MIRT628505 ZNF878 zinc finger protein 878 2 2
MIRT628533 ZNF701 zinc finger protein 701 2 2
MIRT628591 TMEM251 transmembrane protein 251 2 2
MIRT628818 SLC25A34 solute carrier family 25 member 34 2 2
MIRT628896 IGSF6 immunoglobulin superfamily member 6 2 2
MIRT628958 UBE2D4 ubiquitin conjugating enzyme E2 D4 (putative) 2 2
MIRT629005 OSBPL10 oxysterol binding protein like 10 2 2
MIRT629059 KIF1C kinesin family member 1C 2 2
MIRT629192 PAPOLA poly(A) polymerase alpha 2 2
MIRT629346 TMPRSS11BNL TMPRSS11B N-terminal like, pseudogene 2 2
MIRT629447 WIZ widely interspaced zinc finger motifs 2 2
MIRT629696 XKR4 XK related 4 2 2
MIRT629737 SCD5 stearoyl-CoA desaturase 5 2 2
MIRT629896 SPATA5 spermatogenesis associated 5 2 2
MIRT629953 GLP2R glucagon like peptide 2 receptor 2 2
MIRT630023 MTL5 testis expressed metallothionein like protein 2 2
MIRT630181 TLN1 talin 1 2 2
MIRT630325 PAQR5 progestin and adipoQ receptor family member 5 2 2
MIRT630389 MYH9 myosin heavy chain 9 2 4
MIRT630695 EXTL3 exostosin like glycosyltransferase 3 2 2
MIRT631054 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT631130 SYNJ2 synaptojanin 2 2 2
MIRT631374 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT631557 TRAF3IP2 TRAF3 interacting protein 2 2 2
MIRT631615 PCDHB11 protocadherin beta 11 2 2
MIRT631935 CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 2 4
MIRT632109 SSR1 signal sequence receptor subunit 1 2 2
MIRT632168 CCL22 C-C motif chemokine ligand 22 2 2
MIRT632445 SGTB small glutamine rich tetratricopeptide repeat containing beta 2 2
MIRT632652 NAV1 neuron navigator 1 2 2
MIRT632688 MTMR10 myotubularin related protein 10 2 2
MIRT632828 IGF1 insulin like growth factor 1 2 2
MIRT632905 FRRS1 ferric chelate reductase 1 2 2
MIRT633027 DNAL1 dynein axonemal light chain 1 2 2
MIRT633379 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT633440 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT633726 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 2 2
MIRT633832 WHAMM WAS protein homolog associated with actin, golgi membranes and microtubules 2 2
MIRT633862 ATP6V1A ATPase H+ transporting V1 subunit A 2 2
MIRT634042 NUP155 nucleoporin 155 2 2
MIRT634266 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT634374 RAP2B RAP2B, member of RAS oncogene family 2 2
MIRT634439 PDE7A phosphodiesterase 7A 2 2
MIRT634573 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT634620 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT634693 DSEL dermatan sulfate epimerase-like 2 2
MIRT634768 CD3D CD3d molecule 2 2
MIRT635024 WWTR1 WW domain containing transcription regulator 1 2 2
MIRT635384 NHLRC2 NHL repeat containing 2 2 2
MIRT635577 TTC9C tetratricopeptide repeat domain 9C 2 2
MIRT635793 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT635837 ZNF264 zinc finger protein 264 2 2
MIRT636043 ZSCAN29 zinc finger and SCAN domain containing 29 2 4
MIRT636070 ZNF280C zinc finger protein 280C 2 2
MIRT636697 ARSK arylsulfatase family member K 2 2
MIRT637438 ZNF324B zinc finger protein 324B 2 2
MIRT637582 PLD6 phospholipase D family member 6 2 2
MIRT637672 PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D 2 2
MIRT637887 SLC19A3 solute carrier family 19 member 3 2 4
MIRT638353 RBMS2 RNA binding motif single stranded interacting protein 2 2 4
MIRT638597 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT638821 CRTAP cartilage associated protein 2 2
MIRT638871 CEP97 centrosomal protein 97 2 4
MIRT639660 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT640200 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT641592 TNS4 tensin 4 2 2
MIRT644993 POLR2J3 RNA polymerase II subunit J3 2 2
MIRT645059 UQCRQ ubiquinol-cytochrome c reductase complex III subunit VII 2 2
MIRT646948 UPK3BL uroplakin 3B like 1 2 2
MIRT647306 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT648300 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT649043 SLC1A2 solute carrier family 1 member 2 2 2
MIRT649884 SLFN12L schlafen family member 12 like 2 2
MIRT650196 DOCK7 dedicator of cytokinesis 7 2 2
MIRT654789 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655667 NUP43 nucleoporin 43 2 2
MIRT655925 NDUFA4P1 NDUFA4, mitochondrial complex associated pseudogene 1 2 2
MIRT656433 MARCH6 membrane associated ring-CH-type finger 6 2 2
MIRT657713 GPC4 glypican 4 2 2
MIRT659302 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT659844 CAPZB capping actin protein of muscle Z-line beta subunit 2 2
MIRT660660 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT661308 CPM carboxypeptidase M 2 2
MIRT661473 CHMP1B charged multivesicular body protein 1B 2 2
MIRT661906 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT662064 ZNF284 zinc finger protein 284 2 2
MIRT662491 ANGPT4 angiopoietin 4 2 2
MIRT662657 LRRC47 leucine rich repeat containing 47 2 2
MIRT662804 MSRB2 methionine sulfoxide reductase B2 2 2
MIRT663164 FGFR1OP FGFR1 oncogene partner 2 2
MIRT663376 ZNF770 zinc finger protein 770 2 4
MIRT663418 ZNF607 zinc finger protein 607 2 2
MIRT663990 WDR75 WD repeat domain 75 2 2
MIRT664157 APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F 2 4
MIRT664489 POLR3K RNA polymerase III subunit K 2 2
MIRT665058 CCDC77 coiled-coil domain containing 77 2 2
MIRT665080 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT665420 WDR55 WD repeat domain 55 2 2
MIRT665716 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT665923 TBC1D19 TBC1 domain family member 19 2 4
MIRT666239 SLC38A7 solute carrier family 38 member 7 2 4
MIRT666840 PPTC7 PTC7 protein phosphatase homolog 2 2
MIRT667378 MOB1B MOB kinase activator 1B 2 2
MIRT667573 LONRF2 LON peptidase N-terminal domain and ring finger 2 2 2
MIRT667894 ING1 inhibitor of growth family member 1 2 2
MIRT667977 HECTD3 HECT domain E3 ubiquitin protein ligase 3 2 2
MIRT668197 GCNT4 glucosaminyl (N-acetyl) transferase 4, core 2 2 2
MIRT668279 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT668386 FAT3 FAT atypical cadherin 3 2 2
MIRT668444 FAM208A family with sequence similarity 208 member A 2 2
MIRT668998 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT669180 CCNF cyclin F 2 2
MIRT669444 ATL3 atlastin GTPase 3 2 2
MIRT669661 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT669890 KIAA0754 KIAA0754 2 4
MIRT669973 SSR3 signal sequence receptor subunit 3 2 2
MIRT670153 SLC29A4 solute carrier family 29 member 4 2 2
MIRT670240 TRIM13 tripartite motif containing 13 2 2
MIRT670274 CBY3 chibby family member 3 2 2
MIRT670358 ULBP3 UL16 binding protein 3 2 4
MIRT670627 BVES blood vessel epicardial substance 2 2
MIRT670731 HOOK3 hook microtubule tethering protein 3 2 2
MIRT670770 TRIM66 tripartite motif containing 66 2 2
MIRT670913 DESI1 desumoylating isopeptidase 1 2 2
MIRT671216 CLSTN1 calsyntenin 1 2 2
MIRT671398 ERCC6L2 ERCC excision repair 6 like 2 2 2
MIRT671427 TOX4 TOX high mobility group box family member 4 2 2
MIRT671654 TRUB2 TruB pseudouridine synthase family member 2 2 4
MIRT671702 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT672136 PLEKHH1 pleckstrin homology, MyTH4 and FERM domain containing H1 2 2
MIRT672395 SLC10A6 solute carrier family 10 member 6 2 2
MIRT672508 GGCX gamma-glutamyl carboxylase 2 2
MIRT672572 RNF24 ring finger protein 24 2 2
MIRT672789 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT673019 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT673190 C10orf76 chromosome 10 open reading frame 76 2 2
MIRT673372 ZNF124 zinc finger protein 124 2 2
MIRT673495 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 6
MIRT673852 CAPN7 calpain 7 2 2
MIRT673929 ZNF500 zinc finger protein 500 2 2
MIRT673986 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT674076 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT674123 RPL7L1 ribosomal protein L7 like 1 2 2
MIRT674297 THAP5 THAP domain containing 5 2 2
MIRT674370 POLR3D RNA polymerase III subunit D 2 2
MIRT674641 NKRF NFKB repressing factor 2 2
MIRT674665 PLCE1 phospholipase C epsilon 1 2 2
MIRT674725 ZNF451 zinc finger protein 451 2 4
MIRT674779 NPR1 natriuretic peptide receptor 1 2 2
MIRT674889 RASSF9 Ras association domain family member 9 2 2
MIRT675017 SNX1 sorting nexin 1 2 2
MIRT675341 KLHL26 kelch like family member 26 2 2
MIRT675416 CLEC7A C-type lectin domain containing 7A 2 2
MIRT675497 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT675615 EHD2 EH domain containing 2 2 2
MIRT675735 AHR aryl hydrocarbon receptor 2 2
MIRT675857 ATP1B4 ATPase Na+/K+ transporting family member beta 4 2 2
MIRT675990 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676213 TMEM91 transmembrane protein 91 2 2
MIRT676406 MRO maestro 2 2
MIRT677299 CPSF2 cleavage and polyadenylation specific factor 2 2 2
MIRT677387 PCNP PEST proteolytic signal containing nuclear protein 2 2
MIRT677859 ABI2 abl interactor 2 2 2
MIRT677965 ITGB3 integrin subunit beta 3 2 2
MIRT678175 CRCP CGRP receptor component 2 2
MIRT678273 PTRH2 peptidyl-tRNA hydrolase 2 2 2
MIRT678665 SCUBE3 signal peptide, CUB domain and EGF like domain containing 3 2 2
MIRT679003 TTC39B tetratricopeptide repeat domain 39B 2 2
MIRT679053 RMDN1 regulator of microtubule dynamics 1 2 2
MIRT679461 RHOF ras homolog family member F, filopodia associated 2 2
MIRT679513 RAB36 RAB36, member RAS oncogene family 2 2
MIRT679914 ZKSCAN3 zinc finger with KRAB and SCAN domains 3 2 2
MIRT680029 OSBPL2 oxysterol binding protein like 2 2 4
MIRT680245 NDUFA7 NADH:ubiquinone oxidoreductase subunit A7 2 2
MIRT680279 AKIP1 A-kinase interacting protein 1 2 2
MIRT680499 PRIM2 DNA primase subunit 2 2 2
MIRT680586 ZNF573 zinc finger protein 573 2 2
MIRT680629 KIAA1456 KIAA1456 2 2
MIRT680819 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT680998 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 2 2
MIRT681122 INTS7 integrator complex subunit 7 2 2
MIRT681161 IBA57 IBA57 homolog, iron-sulfur cluster assembly 2 2
MIRT681221 DUSP19 dual specificity phosphatase 19 2 2
MIRT681304 IKZF3 IKAROS family zinc finger 3 2 2
MIRT681341 BRI3BP BRI3 binding protein 2 2
MIRT681608 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT681779 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT681892 SLC11A2 solute carrier family 11 member 2 2 2
MIRT682084 ITGA3 integrin subunit alpha 3 2 4
MIRT682139 SMS spermine synthase 2 2
MIRT682217 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT682367 PHACTR4 phosphatase and actin regulator 4 2 2
MIRT682535 EXOSC2 exosome component 2 2 2
MIRT682618 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT683643 ZNF695 zinc finger protein 695 2 2
MIRT684008 FOLR1 folate receptor 1 2 2
MIRT684442 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT684855 ZNF749 zinc finger protein 749 2 2
MIRT684956 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT685044 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685095 DTD2 D-tyrosyl-tRNA deacylase 2 (putative) 2 2
MIRT685382 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT685456 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT685810 SLC27A1 solute carrier family 27 member 1 2 2
MIRT685913 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT686665 TMEM120B transmembrane protein 120B 2 2
MIRT686955 SFT2D2 SFT2 domain containing 2 2 2
MIRT687118 QPCTL glutaminyl-peptide cyclotransferase like 2 2
MIRT687739 KIAA1328 KIAA1328 2 2
MIRT688063 GLUL glutamate-ammonia ligase 2 2
MIRT688191 FNIP1 folliculin interacting protein 1 2 2
MIRT688769 CDH7 cadherin 7 2 2
MIRT688979 ATP6AP1 ATPase H+ transporting accessory protein 1 2 2
MIRT689572 NUDT7 nudix hydrolase 7 2 2
MIRT689683 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT689930 MANSC1 MANSC domain containing 1 2 2
MIRT690089 PNMA2 paraneoplastic Ma antigen 2 2 2
MIRT690190 C5orf45 MRN complex interacting protein 2 2
MIRT690246 CAMLG calcium modulating ligand 2 2
MIRT690411 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT690840 DSN1 DSN1 homolog, MIS12 kinetochore complex component 2 2
MIRT690889 FUT2 fucosyltransferase 2 2 2
MIRT691107 ADIPOQ adiponectin, C1Q and collagen domain containing 2 2
MIRT691229 DFNB59 pejvakin 2 2
MIRT691300 ZNF681 zinc finger protein 681 2 2
MIRT691366 GP5 glycoprotein V platelet 2 2
MIRT691797 WARS tryptophanyl-tRNA synthetase 2 2
MIRT692142 CEP104 centrosomal protein 104 2 2
MIRT692572 NCMAP non-compact myelin associated protein 2 2
MIRT692649 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT692744 NDUFS5 NADH:ubiquinone oxidoreductase subunit S5 2 2
MIRT693092 SCNM1 sodium channel modifier 1 2 2
MIRT693296 SYTL3 synaptotagmin like 3 2 2
MIRT693392 ZNF460 zinc finger protein 460 2 2
MIRT693530 ZNF708 zinc finger protein 708 2 2
MIRT693562 PIGR polymeric immunoglobulin receptor 2 2
MIRT694492 AGBL5 ATP/GTP binding protein like 5 2 2
MIRT694722 LLGL1 LLGL1, scribble cell polarity complex component 2 2
MIRT694866 ZNF417 zinc finger protein 417 2 2
MIRT695070 ZNF17 zinc finger protein 17 2 2
MIRT695451 COX18 COX18, cytochrome c oxidase assembly factor 2 2
MIRT695724 ZNF117 zinc finger protein 117 2 2
MIRT695898 MED16 mediator complex subunit 16 2 2
MIRT696244 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT696259 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT696512 C3 complement C3 2 2
MIRT696560 TTC21B tetratricopeptide repeat domain 21B 2 2
MIRT696643 AGXT2 alanine--glyoxylate aminotransferase 2 2 2
MIRT696791 DHODH dihydroorotate dehydrogenase (quinone) 2 2
MIRT696819 PLLP plasmolipin 2 2
MIRT697088 GPKOW G-patch domain and KOW motifs 2 2
MIRT697153 INMT indolethylamine N-methyltransferase 2 2
MIRT697202 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697322 ZNF641 zinc finger protein 641 2 2
MIRT697578 YME1L1 YME1 like 1 ATPase 2 2
MIRT697619 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT698619 TES testin LIM domain protein 2 2
MIRT698804 STK38 serine/threonine kinase 38 2 2
MIRT698949 SPAST spastin 2 2
MIRT699083 SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 2 2
MIRT699430 SLC1A5 solute carrier family 1 member 5 2 2
MIRT699550 SIT1 signaling threshold regulating transmembrane adaptor 1 2 2
MIRT700324 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT700360 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT700462 PURB purine rich element binding protein B 2 2
MIRT701677 MYADM myeloid associated differentiation marker 2 2
MIRT701757 MSL2 MSL complex subunit 2 2 2
MIRT701977 MIER3 MIER family member 3 2 2
MIRT703178 GPBP1 GC-rich promoter binding protein 1 2 2
MIRT703203 GOLGA3 golgin A3 2 2
MIRT703359 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT703425 FYTTD1 forty-two-three domain containing 1 2 2
MIRT703484 FNDC3B fibronectin type III domain containing 3B 2 2
MIRT703590 FBXO45 F-box protein 45 2 2
MIRT703806 EVI5 ecotropic viral integration site 5 2 2
MIRT703915 EPG5 ectopic P-granules autophagy protein 5 homolog 2 2
MIRT704234 DHDDS dehydrodolichyl diphosphate synthase subunit 2 2
MIRT704646 CLCC1 chloride channel CLIC like 1 2 2
MIRT705151 C11orf58 chromosome 11 open reading frame 58 2 2
MIRT705480 ASXL2 additional sex combs like 2, transcriptional regulator 2 2
MIRT705530 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT705661 ANKRD40 ankyrin repeat domain 40 2 2
MIRT706144 ZNF674 zinc finger protein 674 2 2
MIRT706473 SNX27 sorting nexin family member 27 2 2
MIRT708254 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT708838 SCAND3 zinc finger BED-type containing 9 1 1
MIRT710437 BTNL3 butyrophilin like 3 2 2
MIRT711325 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT716151 RBM48 RNA binding motif protein 48 2 2
MIRT717402 ZCCHC24 zinc finger CCHC-type containing 24 2 2
MIRT720866 ADCY5 adenylate cyclase 5 2 2
MIRT722226 ZNF503 zinc finger protein 503 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-1273h-5p Paclitaxel 36314 NSC125973 approved sensitive High Ovarian Cancer cell line (SKOV3)
hsa-miR-1273h-5p Tripterygium wilfordii Hook F resistant tissue
hsa-miR-1273h-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (MGC-803)

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