pre-miRNA Information
pre-miRNA hsa-mir-605   
Genomic Coordinates chr10: 51299573 - 51299655
Synonyms MIRN605, hsa-mir-605, MIR605
Description Homo sapiens miR-605 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-605-3p
Sequence 51| AGAAGGCACUAUGAGAUUUAGA |72
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 4 10 + 51299626 27587585, 28550310, 26028588, 26449202, 26487287, 29165639 MiREDiBase
A-to-I 14 10 + 51299636 29233923 MiREDiBase
A-to-I 20 10 + 51299642 18684997, 26449202, 27587585, 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs759219082 5 dbSNP
rs1491224174 9 dbSNP
rs746611214 10 dbSNP
rs367648737 11 dbSNP
rs1359467239 14 dbSNP
rs1442565019 16 dbSNP
Putative Targets

Gene Information
Gene Symbol TIMM22   
Synonyms TEX4, TIM22
Description translocase of inner mitochondrial membrane 22
Transcript NM_013337   
Expression
Putative miRNA Targets on TIMM22
3'UTR of TIMM22
(miRNA target sites are highlighted)
>TIMM22|NM_013337|3'UTR
   1 GAGTAATTGCCTGCAGGGAAGGATGATGCCAGCCCCGGATCCGGGCTGCTCTCTGGAGGACAGTTTCTGTACCACACCAG
  81 GGCCTTGCTTCAGGGCCTGAAGACATTCATTTTCCCTCATGTCGTTGGTATTCTGAGGGAGCTGCCTGGCTTCTCTGCCT
 161 CCAGCCTTTGGGGTAGCCACACTTTGCTGCTCCTGGACTCCAGCCAGCCTTCACAGAGGACGTCCCGTGCCAGATTCTCT
 241 CACAGCAGATCGGGAGACAGGATGTTGACATATAGGAATTCAGCTCCACAAAGCTTCAGGCCTGACCACAGCTGGCCCTC
 321 TAGGTTGTTTGGTGTTGTGGGCACAGAGGTGACAGTGTCTCTGCAGGCACTCAGGAAGCTGTTCTACCTTGGAACTCCAT
 401 GCAACTATCCGTCTCGAATACCAGGGCAGGGCAAGGCGGACTGATGCCGTCCAACCAATTATCTCACTTGTTTTGTGTTC
 481 TGTCATCCTTGTTTTTTTTTTAAAAATACACTCCCCTCCCCCACCGCCACACACCTTACAGTTCAAAAGGTTGGTTTATT
 561 TGTATTTTATTTTCAAATTCCCTATTCCAAAAATAGTGCCGGGTGGCCCAAAGATAACATCTGAAGGGAAAGAATGAGAA
 641 AGCTCCCAGGGAAGCGGGGGATGGGGCGCTGAGGCAGGGTTGTTAGAGGACTGTGTCATCCTCACCAAGCTCATTACATC
 721 TGCCAGGGCCTGCCTCAAGAAGCCCAGCCCAGCCTTTTCCTGGGATGCAGTGAAATCCCATCCATGAACTCGATGGGCCC
 801 CTCCTGTGCCGGCCGAGAGGCACACACTGCCTTCACGACGTGACTGCTGGACCTGGCCGAGCTTGAGGCCACATGTGAAG
 881 GGTCCTGCTGTGGTCATCTTGGTGACTCGGTCACAGCAGCTACTGGCCAAGATCAGACGTCGCTGAGGGGCTGTTCACCA
 961 CCATCCTCGTTCTCCAGGGTCAAGGAAGTGTTTTAACATGTCGTGTTTTCGACTTGACCTTGTGGTATTTTTCTTGGCCT
1041 AGTTGTGTGCCATGGATATTAAAAAAAAAAAAAAAAAAATCCGTCTACAGTTGGG
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' agaUUUAGAGUAUCACGGAAGa 5'
             :|: | || | ||||||| 
Target 5' cgaGAGGCACACACTGCCTTCa 3'
814 - 835 155.00 -8.70
2
miRNA  3' agAUU-UAGAGUAUCACGGAAGa 5'
            ||| || ||   |||::||| 
Target 5' ttTAACATGTC---GTGTTTTCg 3'
992 - 1011 125.00 -8.90
3
miRNA  3' agAUUUAGA--GUAUC--ACGGAaga 5'
            || ||||  || :|  |||||   
Target 5' atTACATCTGCCAGGGCCTGCCTcaa 3'
713 - 738 120.00 -8.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26998603 15 COSMIC
COSN31500898 35 COSMIC
COSN31534558 39 COSMIC
COSN30494572 71 COSMIC
COSN26998604 77 COSMIC
COSN31597882 96 COSMIC
COSN1730551 121 COSMIC
COSN30132382 124 COSMIC
COSN31511556 134 COSMIC
COSN23172482 604 COSMIC
COSN9324766 1065 COSMIC
COSN25176143 2069 COSMIC
COSN6549579 2127 COSMIC
COSN31596438 2525 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs749976361 2 dbSNP
rs1016386714 3 dbSNP
rs758373361 5 dbSNP
rs1463875758 6 dbSNP
rs780146376 8 dbSNP
rs1271380336 9 dbSNP
rs746744924 12 dbSNP
rs1480876568 15 dbSNP
rs1312129004 16 dbSNP
rs754791215 18 dbSNP
rs1371340376 19 dbSNP
rs954959409 27 dbSNP
rs780919473 36 dbSNP
rs551172891 37 dbSNP
rs193292443 38 dbSNP
rs773289409 42 dbSNP
rs749397566 43 dbSNP
rs74971146 44 dbSNP
rs369271117 47 dbSNP
rs143573501 49 dbSNP
rs151010010 50 dbSNP
rs1170356497 55 dbSNP
rs1429889201 57 dbSNP
rs925751143 58 dbSNP
rs934479027 59 dbSNP
rs1052972314 63 dbSNP
rs1256343995 70 dbSNP
rs544493456 72 dbSNP
rs1342622243 73 dbSNP
rs949978032 80 dbSNP
rs1204246689 84 dbSNP
rs184257817 96 dbSNP
rs1207887047 98 dbSNP
rs531010426 103 dbSNP
rs1273989084 109 dbSNP
rs1183628632 116 dbSNP
rs1323733737 119 dbSNP
rs545186233 124 dbSNP
rs188180262 125 dbSNP
rs1376671671 129 dbSNP
rs907773131 130 dbSNP
rs140885589 131 dbSNP
rs191495764 134 dbSNP
rs1423396801 140 dbSNP
rs1161919606 148 dbSNP
rs973091010 150 dbSNP
rs552029953 151 dbSNP
rs564093563 154 dbSNP
rs1368710864 156 dbSNP
rs1163610173 157 dbSNP
rs150077642 165 dbSNP
rs184008004 166 dbSNP
rs931740179 169 dbSNP
rs1185041894 170 dbSNP
rs333646 175 dbSNP
rs912747797 181 dbSNP
rs1251639021 191 dbSNP
rs1194178638 194 dbSNP
rs994047668 195 dbSNP
rs775132437 196 dbSNP
rs1026488855 199 dbSNP
rs1244293359 200 dbSNP
rs1332495005 205 dbSNP
rs1289998828 207 dbSNP
rs1450841675 208 dbSNP
rs954908849 209 dbSNP
rs1302877064 210 dbSNP
rs1009146100 213 dbSNP
rs1388063664 215 dbSNP
rs1390792182 224 dbSNP
rs1292659007 227 dbSNP
rs536550023 228 dbSNP
rs944179534 252 dbSNP
rs188692979 253 dbSNP
rs925666905 258 dbSNP
rs1180255767 260 dbSNP
rs1435019430 272 dbSNP
rs1268140733 273 dbSNP
rs35016834 275 dbSNP
rs902743353 275 dbSNP
rs34996885 279 dbSNP
rs35128921 282 dbSNP
rs879373795 289 dbSNP
rs1209255372 290 dbSNP
rs566993699 309 dbSNP
rs1467315209 313 dbSNP
rs138680008 319 dbSNP
rs1209148494 330 dbSNP
rs1227372032 336 dbSNP
rs1053801886 337 dbSNP
rs1277747156 338 dbSNP
rs1235326543 341 dbSNP
rs895111125 344 dbSNP
rs763598511 356 dbSNP
rs1025035993 357 dbSNP
rs927242178 359 dbSNP
rs937980959 360 dbSNP
rs1388321721 369 dbSNP
rs1210740053 382 dbSNP
rs1037724658 385 dbSNP
rs776149390 386 dbSNP
rs114553150 396 dbSNP
rs993605421 401 dbSNP
rs1047877424 402 dbSNP
rs1015296167 405 dbSNP
rs890626395 408 dbSNP
rs765748037 411 dbSNP
rs963317594 412 dbSNP
rs973694372 414 dbSNP
rs1255296067 416 dbSNP
rs1231466045 417 dbSNP
rs1297931746 426 dbSNP
rs921604674 438 dbSNP
rs1188269325 439 dbSNP
rs1316687736 440 dbSNP
rs1417851300 442 dbSNP
rs1258013736 444 dbSNP
rs1032683110 449 dbSNP
rs114640667 450 dbSNP
rs761643423 455 dbSNP
rs1172483879 456 dbSNP
rs146952600 458 dbSNP
rs1392099836 459 dbSNP
rs911627529 459 dbSNP
rs1449110748 462 dbSNP
rs1240512230 464 dbSNP
rs944231711 471 dbSNP
rs917017832 475 dbSNP
rs1042556230 476 dbSNP
rs1359151791 478 dbSNP
rs759044594 479 dbSNP
rs1467767400 482 dbSNP
rs1322032236 487 dbSNP
rs1388858316 490 dbSNP
rs199909189 492 dbSNP
rs556607964 492 dbSNP
rs979918295 492 dbSNP
rs1433948700 493 dbSNP
rs1450691021 502 dbSNP
rs72812079 502 dbSNP
rs542195351 503 dbSNP
rs1054424905 509 dbSNP
rs201100645 513 dbSNP
rs1413456326 514 dbSNP
rs895163634 516 dbSNP
rs73978317 518 dbSNP
rs1300499409 520 dbSNP
rs1012241988 523 dbSNP
rs146153275 524 dbSNP
rs560287949 526 dbSNP
rs543300366 527 dbSNP
rs2884904 528 dbSNP
rs138050930 529 dbSNP
rs1473028204 536 dbSNP
rs3191897 537 dbSNP
rs3191899 538 dbSNP
rs777075672 545 dbSNP
rs773161316 553 dbSNP
rs1047825301 557 dbSNP
rs1005158356 559 dbSNP
rs1270116210 560 dbSNP
rs1252398790 563 dbSNP
rs1465480733 566 dbSNP
rs1208349129 573 dbSNP
rs1014767774 582 dbSNP
rs1435543329 585 dbSNP
rs890575790 592 dbSNP
rs1228528702 595 dbSNP
rs1357560125 599 dbSNP
rs898954544 600 dbSNP
rs994781841 601 dbSNP
rs1028837165 602 dbSNP
rs563999283 603 dbSNP
rs1479199315 604 dbSNP
rs1309119734 610 dbSNP
rs1192202037 619 dbSNP
rs1425040889 623 dbSNP
rs1352809818 627 dbSNP
rs1479757110 633 dbSNP
rs1039239049 645 dbSNP
rs1388741010 646 dbSNP
rs1162534038 655 dbSNP
rs9737 656 dbSNP
rs987077732 657 dbSNP
rs1018686903 658 dbSNP
rs1468213558 661 dbSNP
rs1247930952 662 dbSNP
rs1221582990 664 dbSNP
rs1251699997 668 dbSNP
rs752886197 669 dbSNP
rs1212238046 680 dbSNP
rs333645 681 dbSNP
rs528826456 685 dbSNP
rs1223711956 693 dbSNP
rs1365343656 697 dbSNP
rs1276705449 701 dbSNP
rs1009884222 704 dbSNP
rs1370559470 709 dbSNP
rs1023979437 713 dbSNP
rs1290218802 713 dbSNP
rs370619509 713 dbSNP
rs538613429 719 dbSNP
rs971138387 720 dbSNP
rs1158367288 722 dbSNP
rs1329947712 729 dbSNP
rs1227922562 735 dbSNP
rs149402951 739 dbSNP
rs1427092282 740 dbSNP
rs1191294711 742 dbSNP
rs1250809787 752 dbSNP
rs745657009 752 dbSNP
rs187149469 753 dbSNP
rs989778530 769 dbSNP
rs867022924 771 dbSNP
rs916817553 785 dbSNP
rs1215446792 790 dbSNP
rs974016017 793 dbSNP
rs948076046 797 dbSNP
rs1246525679 798 dbSNP
rs1281299119 799 dbSNP
rs1489984926 801 dbSNP
rs1219938875 802 dbSNP
rs1370297769 807 dbSNP
rs772054319 811 dbSNP
rs3867592 812 dbSNP
rs867456347 813 dbSNP
rs906498609 815 dbSNP
rs1471976648 816 dbSNP
rs190330955 820 dbSNP
rs1176680093 825 dbSNP
rs1433607647 826 dbSNP
rs1170156447 827 dbSNP
rs1036829964 828 dbSNP
rs1039188192 831 dbSNP
rs1186331191 837 dbSNP
rs1485084430 840 dbSNP
rs899010651 841 dbSNP
rs936187694 848 dbSNP
rs144787394 853 dbSNP
rs1028889297 856 dbSNP
rs558570420 858 dbSNP
rs1009833084 859 dbSNP
rs527851118 860 dbSNP
rs1018570261 867 dbSNP
rs1295059750 873 dbSNP
rs552293213 885 dbSNP
rs1381035092 888 dbSNP
rs906926484 891 dbSNP
rs1001232458 895 dbSNP
rs1349864190 897 dbSNP
rs1034554045 898 dbSNP
rs962557567 900 dbSNP
rs776155007 905 dbSNP
rs546605561 910 dbSNP
rs1229109361 916 dbSNP
rs1427178782 924 dbSNP
rs538348454 929 dbSNP
rs1033164603 934 dbSNP
rs763193585 939 dbSNP
rs951296178 940 dbSNP
rs148575084 942 dbSNP
rs958255537 943 dbSNP
rs1207823357 944 dbSNP
rs989645547 947 dbSNP
rs911906031 949 dbSNP
rs1207406420 951 dbSNP
rs1480989939 952 dbSNP
rs1251014544 953 dbSNP
rs916868533 955 dbSNP
rs944726624 962 dbSNP
rs568511260 964 dbSNP
rs982321744 969 dbSNP
rs1313177791 970 dbSNP
rs769568340 973 dbSNP
rs1353519109 974 dbSNP
rs940658204 978 dbSNP
rs1395138364 989 dbSNP
rs1409947127 989 dbSNP
rs1472883463 990 dbSNP
rs1296149872 992 dbSNP
rs974834658 999 dbSNP
rs751039530 1000 dbSNP
rs1036475770 1003 dbSNP
rs899225788 1004 dbSNP
rs1369847629 1006 dbSNP
rs1249896942 1010 dbSNP
rs930531236 1011 dbSNP
rs564745850 1012 dbSNP
rs1212861525 1015 dbSNP
rs1332385321 1018 dbSNP
rs913446547 1019 dbSNP
rs1239662483 1021 dbSNP
rs1335035711 1025 dbSNP
rs1304233906 1026 dbSNP
rs1387964549 1036 dbSNP
rs1326862557 1038 dbSNP
rs1342361269 1039 dbSNP
rs1324773836 1041 dbSNP
rs1448928971 1048 dbSNP
rs1461290642 1058 dbSNP
rs201562447 1059 dbSNP
rs1162073103 1060 dbSNP
rs1193237672 1061 dbSNP
rs1253922500 1061 dbSNP
rs1434931879 1061 dbSNP
rs1454778588 1061 dbSNP
rs1467015091 1061 dbSNP
rs368956121 1061 dbSNP
rs535066980 1061 dbSNP
rs58985331 1061 dbSNP
rs751531884 1061 dbSNP
rs879559913 1061 dbSNP
rs1051540 1062 dbSNP
rs116120219 1063 dbSNP
rs143003304 1064 dbSNP
rs1275828867 1065 dbSNP
rs1339257927 1066 dbSNP
rs1194589095 1067 dbSNP
rs77706863 1078 dbSNP
rs888912242 1080 dbSNP
rs1442483909 1083 dbSNP
rs1045996666 1084 dbSNP
rs1008790286 1085 dbSNP
rs1040241432 1088 dbSNP
rs1186303973 1089 dbSNP
rs1240844935 1090 dbSNP
rs1450993328 1092 dbSNP
rs1188908669 1104 dbSNP
rs553810119 1107 dbSNP
rs1383090129 1114 dbSNP
rs998910225 1119 dbSNP
rs1384903609 1124 dbSNP
rs182488829 1129 dbSNP
rs1389329020 1132 dbSNP
rs1395752348 1132 dbSNP
rs1467684967 1132 dbSNP
rs957341616 1133 dbSNP
rs1193656747 1135 dbSNP
rs1446189015 1137 dbSNP
rs1001180088 1138 dbSNP
rs1202107238 1138 dbSNP
rs1012638953 1159 dbSNP
rs1023812219 1161 dbSNP
rs1055536399 1173 dbSNP
rs969521219 1177 dbSNP
rs982372342 1178 dbSNP
rs1228674847 1186 dbSNP
rs186347782 1189 dbSNP
rs1316912679 1196 dbSNP
rs76131008 1199 dbSNP
rs1312384153 1201 dbSNP
rs1025902681 1204 dbSNP
rs189567791 1210 dbSNP
rs74343380 1214 dbSNP
rs1474997613 1220 dbSNP
rs564013627 1228 dbSNP
rs142016250 1230 dbSNP
rs1298707432 1237 dbSNP
rs1475499599 1240 dbSNP
rs1019564620 1244 dbSNP
rs1208130807 1245 dbSNP
rs1483737846 1250 dbSNP
rs966019808 1251 dbSNP
rs541039741 1253 dbSNP
rs1336977505 1256 dbSNP
rs150608020 1259 dbSNP
rs944531736 1260 dbSNP
rs1277116759 1261 dbSNP
rs957687395 1263 dbSNP
rs1040318360 1273 dbSNP
rs1346370652 1274 dbSNP
rs903096977 1275 dbSNP
rs990300274 1278 dbSNP
rs1356349035 1280 dbSNP
rs1260730120 1287 dbSNP
rs1465941268 1288 dbSNP
rs527994495 1289 dbSNP
rs1054538290 1290 dbSNP
rs1475385641 1291 dbSNP
rs1426516813 1292 dbSNP
rs199937460 1293 dbSNP
rs1378111983 1295 dbSNP
rs1477670590 1296 dbSNP
rs1175754061 1298 dbSNP
rs1045943251 1318 dbSNP
rs1180378623 1325 dbSNP
rs760040971 1336 dbSNP
rs1291519601 1337 dbSNP
rs1458962820 1341 dbSNP
rs892764295 1349 dbSNP
rs1273181313 1352 dbSNP
rs1012689000 1354 dbSNP
rs1384608646 1355 dbSNP
rs936994630 1360 dbSNP
rs1055888402 1361 dbSNP
rs898206321 1367 dbSNP
rs333644 1368 dbSNP
rs1393455471 1371 dbSNP
rs538611371 1371 dbSNP
rs1408572016 1372 dbSNP
rs1223471293 1377 dbSNP
rs752741764 1379 dbSNP
rs756394860 1389 dbSNP
rs1248132147 1390 dbSNP
rs1330588975 1394 dbSNP
rs1003694354 1401 dbSNP
rs1252776254 1407 dbSNP
rs1259749527 1417 dbSNP
rs1212142174 1422 dbSNP
rs1046883683 1425 dbSNP
rs1285520532 1426 dbSNP
rs1223340654 1428 dbSNP
rs1348590392 1435 dbSNP
rs78286208 1441 dbSNP
rs1441900795 1443 dbSNP
rs1267836372 1451 dbSNP
rs1008090935 1456 dbSNP
rs1197203107 1470 dbSNP
rs962598216 1475 dbSNP
rs1345765160 1476 dbSNP
rs1019512406 1477 dbSNP
rs1253958952 1488 dbSNP
rs1398513653 1490 dbSNP
rs1396346278 1494 dbSNP
rs1173648694 1495 dbSNP
rs753997889 1496 dbSNP
rs920592803 1501 dbSNP
rs531835111 1502 dbSNP
rs952021007 1503 dbSNP
rs1243241387 1507 dbSNP
rs1487043241 1507 dbSNP
rs1363416053 1510 dbSNP
rs1445410902 1511 dbSNP
rs957427942 1514 dbSNP
rs1451925211 1526 dbSNP
rs1282582050 1530 dbSNP
rs986209110 1530 dbSNP
rs750878624 1539 dbSNP
rs1165321219 1548 dbSNP
rs1235060653 1554 dbSNP
rs990636511 1555 dbSNP
rs910620559 1556 dbSNP
rs1216151047 1558 dbSNP
rs1362391299 1565 dbSNP
rs967506366 1576 dbSNP
rs550334370 1578 dbSNP
rs1428565312 1580 dbSNP
rs143627389 1580 dbSNP
rs182225574 1594 dbSNP
rs1409884307 1596 dbSNP
rs1433510026 1604 dbSNP
rs928868261 1611 dbSNP
rs1172049083 1613 dbSNP
rs1305704688 1622 dbSNP
rs1314725237 1625 dbSNP
rs1430734190 1633 dbSNP
rs1420655236 1634 dbSNP
rs937594729 1637 dbSNP
rs554153925 1640 dbSNP
rs1040602924 1647 dbSNP
rs991138056 1652 dbSNP
rs756630109 1656 dbSNP
rs1278534075 1658 dbSNP
rs565796153 1658 dbSNP
rs1358443573 1662 dbSNP
rs1220059510 1670 dbSNP
rs924435284 1671 dbSNP
rs1294588907 1673 dbSNP
rs931036036 1675 dbSNP
rs1357316013 1679 dbSNP
rs934577278 1680 dbSNP
rs1413683074 1684 dbSNP
rs1483369804 1686 dbSNP
rs1177804378 1688 dbSNP
rs372833565 1691 dbSNP
rs1170214792 1694 dbSNP
rs886867884 1700 dbSNP
rs758128910 1702 dbSNP
rs1040901990 1703 dbSNP
rs1386173212 1711 dbSNP
rs899713989 1717 dbSNP
rs1178954032 1726 dbSNP
rs185278396 1727 dbSNP
rs948355288 1730 dbSNP
rs376279128 1733 dbSNP
rs1044191819 1734 dbSNP
rs777385616 1739 dbSNP
rs1336641096 1744 dbSNP
rs1273807644 1749 dbSNP
rs1011606569 1753 dbSNP
rs906947251 1756 dbSNP
rs779856005 1757 dbSNP
rs1391414502 1760 dbSNP
rs1430989256 1761 dbSNP
rs1296060703 1768 dbSNP
rs575866726 1774 dbSNP
rs1445115185 1776 dbSNP
rs543091394 1778 dbSNP
rs897952534 1779 dbSNP
rs746940389 1786 dbSNP
rs1301502205 1790 dbSNP
rs1370560208 1790 dbSNP
rs768609944 1791 dbSNP
rs1419727733 1795 dbSNP
rs1250132934 1804 dbSNP
rs555013486 1805 dbSNP
rs1381634255 1808 dbSNP
rs1469696150 1809 dbSNP
rs573414998 1812 dbSNP
rs1212769464 1813 dbSNP
rs1017677701 1819 dbSNP
rs139651881 1820 dbSNP
rs1315807930 1822 dbSNP
rs1342735449 1822 dbSNP
rs1236054461 1823 dbSNP
rs1306702807 1823 dbSNP
rs1371186478 1825 dbSNP
rs1327027371 1828 dbSNP
rs992150680 1833 dbSNP
rs920216105 1835 dbSNP
rs757062502 1837 dbSNP
rs1454436093 1839 dbSNP
rs1250772209 1844 dbSNP
rs1479697155 1845 dbSNP
rs1202290655 1846 dbSNP
rs930942688 1855 dbSNP
rs1243953552 1857 dbSNP
rs559303049 1864 dbSNP
rs1192825711 1865 dbSNP
rs1182092940 1876 dbSNP
rs1263849215 1876 dbSNP
rs1205633216 1886 dbSNP
rs769375393 1886 dbSNP
rs1283263263 1896 dbSNP
rs796203180 1903 dbSNP
rs1429569878 1905 dbSNP
rs572647751 1907 dbSNP
rs1040848703 1909 dbSNP
rs1302213973 1909 dbSNP
rs899661154 1910 dbSNP
rs1298456179 1911 dbSNP
rs546518540 1919 dbSNP
rs1384793172 1922 dbSNP
rs1467100601 1927 dbSNP
rs1436610743 1932 dbSNP
rs934482001 1937 dbSNP
rs7219458 1941 dbSNP
rs1374598029 1949 dbSNP
rs1193546147 1951 dbSNP
rs1427877255 1955 dbSNP
rs1260870164 1957 dbSNP
rs566406871 1960 dbSNP
rs948406763 1961 dbSNP
rs1020245645 1964 dbSNP
rs550419782 1965 dbSNP
rs1253453620 1972 dbSNP
rs1228563691 1973 dbSNP
rs1340475977 1977 dbSNP
rs1276821086 1985 dbSNP
rs1416770588 1988 dbSNP
rs903243572 1990 dbSNP
rs1333519318 1991 dbSNP
rs1293315801 1996 dbSNP
rs1044075415 1998 dbSNP
rs959111799 1999 dbSNP
rs1013096004 2000 dbSNP
rs1189978824 2001 dbSNP
rs906831219 2010 dbSNP
rs938432009 2016 dbSNP
rs1027624681 2017 dbSNP
rs1256212638 2023 dbSNP
rs1036758052 2024 dbSNP
rs1460990732 2030 dbSNP
rs771222875 2031 dbSNP
rs993664341 2038 dbSNP
rs1273212891 2043 dbSNP
rs190289968 2043 dbSNP
rs1202026845 2048 dbSNP
rs1196796164 2053 dbSNP
rs1027904413 2054 dbSNP
rs557335550 2054 dbSNP
rs562130140 2061 dbSNP
rs1007732054 2063 dbSNP
rs1017561524 2065 dbSNP
rs908198768 2066 dbSNP
rs1283705449 2068 dbSNP
rs183389220 2071 dbSNP
rs976586700 2072 dbSNP
rs1445861867 2073 dbSNP
rs547429506 2081 dbSNP
rs1053646020 2082 dbSNP
rs1461899236 2083 dbSNP
rs1417031155 2087 dbSNP
rs1160978170 2088 dbSNP
rs569935421 2091 dbSNP
rs1233165220 2093 dbSNP
rs768200030 2096 dbSNP
rs1042322131 2102 dbSNP
rs149919406 2114 dbSNP
rs989996042 2115 dbSNP
rs1215898982 2116 dbSNP
rs774758096 2123 dbSNP
rs1289763317 2125 dbSNP
rs948623572 2128 dbSNP
rs1226720262 2134 dbSNP
rs759999237 2144 dbSNP
rs1280419269 2154 dbSNP
rs1239713025 2155 dbSNP
rs1374865067 2157 dbSNP
rs979975765 2159 dbSNP
rs1327711054 2161 dbSNP
rs1441305783 2164 dbSNP
rs1349279906 2169 dbSNP
rs928301553 2171 dbSNP
rs1401995054 2174 dbSNP
rs1408085041 2182 dbSNP
rs903191155 2183 dbSNP
rs1002855395 2191 dbSNP
rs539336096 2193 dbSNP
rs1057454951 2205 dbSNP
rs1195947235 2208 dbSNP
rs1345462899 2211 dbSNP
rs938349217 2216 dbSNP
rs537367219 2220 dbSNP
rs1037213471 2222 dbSNP
rs918342618 2223 dbSNP
rs188793375 2228 dbSNP
rs1049227681 2239 dbSNP
rs1215935134 2242 dbSNP
rs192948016 2247 dbSNP
rs1305876974 2250 dbSNP
rs1234807553 2253 dbSNP
rs1007784375 2258 dbSNP
rs1432810568 2264 dbSNP
rs1039232761 2268 dbSNP
rs768063970 2269 dbSNP
rs747786457 2271 dbSNP
rs771500353 2273 dbSNP
rs1270210483 2278 dbSNP
rs965028768 2279 dbSNP
rs997507535 2288 dbSNP
rs1032211792 2289 dbSNP
rs569635735 2298 dbSNP
rs953824667 2304 dbSNP
rs1215451555 2314 dbSNP
rs752831815 2315 dbSNP
rs1012039028 2326 dbSNP
rs1240749678 2328 dbSNP
rs1193107806 2331 dbSNP
rs1487333279 2333 dbSNP
rs1282822548 2342 dbSNP
rs1211881418 2347 dbSNP
rs1311754496 2349 dbSNP
rs1021468556 2354 dbSNP
rs1276278477 2360 dbSNP
rs1216053689 2362 dbSNP
rs915073582 2363 dbSNP
rs969854059 2364 dbSNP
rs1489715483 2366 dbSNP
rs1356800443 2367 dbSNP
rs1200794636 2369 dbSNP
rs1465239794 2383 dbSNP
rs1357033121 2384 dbSNP
rs1411982940 2389 dbSNP
rs980027266 2389 dbSNP
rs34511912 2391 dbSNP
rs533869208 2403 dbSNP
rs145006740 2404 dbSNP
rs972420910 2406 dbSNP
rs918215731 2414 dbSNP
rs1057132565 2416 dbSNP
rs754087702 2428 dbSNP
rs1408201202 2441 dbSNP
rs1399785643 2444 dbSNP
rs1307854902 2446 dbSNP
rs1012994302 2447 dbSNP
rs1216738465 2448 dbSNP
rs1156590182 2450 dbSNP
rs1336776475 2454 dbSNP
rs931080386 2467 dbSNP
rs1054211 2468 dbSNP
rs1048109520 2480 dbSNP
rs35591000 2483 dbSNP
rs909399999 2483 dbSNP
rs943528022 2486 dbSNP
rs757448405 2487 dbSNP
rs1401469427 2490 dbSNP
rs1170325261 2496 dbSNP
rs1464546095 2501 dbSNP
rs1302468953 2507 dbSNP
rs1039283919 2509 dbSNP
rs902089698 2510 dbSNP
rs1165630520 2514 dbSNP
rs1423285566 2516 dbSNP
rs555149551 2519 dbSNP
rs1015825315 2521 dbSNP
rs1179153899 2527 dbSNP
rs1458338350 2527 dbSNP
rs1053131528 2537 dbSNP
rs1403155379 2538 dbSNP
rs1469784225 2541 dbSNP
rs1243487478 2543 dbSNP
rs1265938184 2543 dbSNP
rs1319404202 2548 dbSNP
rs573352401 2551 dbSNP
rs1308774764 2554 dbSNP
rs1224008635 2560 dbSNP
rs1290312206 2560 dbSNP
rs1375641085 2560 dbSNP
rs891750011 2566 dbSNP
rs1397371825 2571 dbSNP
rs1011684547 2580 dbSNP
rs766134963 2581 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' agauuuaGAGUAUCACGGAAga 5'
                 |||||  |||| |  
Target 5' cuucuucCUCAU-CUGCCCUg- 3'
2 - 21
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000327158.4 | 3UTR | CCUUCUUCCUCAUCUGCCCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
100 hsa-miR-605-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT061339 WEE1 WEE1 G2 checkpoint kinase 2 4
MIRT061584 BTG2 BTG anti-proliferation factor 2 2 6
MIRT076140 WDR81 WD repeat domain 81 2 2
MIRT079361 CCDC137 coiled-coil domain containing 137 2 2
MIRT079547 VAMP3 vesicle associated membrane protein 3 2 2
MIRT096242 CANX calnexin 2 2
MIRT243877 G3BP1 G3BP stress granule assembly factor 1 2 4
MIRT249186 AKIRIN1 akirin 1 2 8
MIRT273604 SP1 Sp1 transcription factor 2 2
MIRT316766 FOXC1 forkhead box C1 2 4
MIRT322410 PPP2R2A protein phosphatase 2 regulatory subunit Balpha 2 2
MIRT370117 TRIB3 tribbles pseudokinase 3 2 2
MIRT392725 UBN2 ubinuclein 2 2 2
MIRT406910 PTBP1 polypyrimidine tract binding protein 1 2 2
MIRT407440 CTDSP1 CTD small phosphatase 1 2 2
MIRT441887 RD3 retinal degeneration 3 2 4
MIRT444979 C15orf52 chromosome 15 open reading frame 52 2 2
MIRT445241 FOXD4 forkhead box D4 2 2
MIRT445500 FOXD4L5 forkhead box D4 like 5 2 2
MIRT445503 FOXD4L4 forkhead box D4 like 4 2 2
MIRT447025 FOXD4L1 forkhead box D4 like 1 2 2
MIRT447743 TMCC3 transmembrane and coiled-coil domain family 3 2 2
MIRT448761 HDX highly divergent homeobox 2 2
MIRT450003 HAX1 HCLS1 associated protein X-1 2 2
MIRT452830 FAM131B family with sequence similarity 131 member B 2 2
MIRT452872 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT453506 ARRB1 arrestin beta 1 2 2
MIRT454169 HIST1H2BK histone cluster 1 H2B family member k 2 2
MIRT458742 CES2 carboxylesterase 2 2 2
MIRT459166 HSPA6 heat shock protein family A (Hsp70) member 6 2 21
MIRT460246 IL17RB interleukin 17 receptor B 2 4
MIRT460514 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT460698 RNF157 ring finger protein 157 2 2
MIRT461481 METTL1 methyltransferase like 1 2 2
MIRT462617 C20orf27 chromosome 20 open reading frame 27 2 4
MIRT463233 ZNF131 zinc finger protein 131 2 2
MIRT465699 TNPO2 transportin 2 2 8
MIRT466304 TIMM22 translocase of inner mitochondrial membrane 22 2 2
MIRT468957 RPS14 ribosomal protein S14 2 6
MIRT469571 RARA retinoic acid receptor alpha 2 2
MIRT469685 RAB5B RAB5B, member RAS oncogene family 2 2
MIRT470800 PMP22 peripheral myelin protein 22 2 2
MIRT471649 PANK2 pantothenate kinase 2 2 4
MIRT471722 OTUB1 OTU deubiquitinase, ubiquitin aldehyde binding 1 2 2
MIRT472281 NFIB nuclear factor I B 2 4
MIRT473680 MAPKBP1 mitogen-activated protein kinase binding protein 1 2 2
MIRT475859 H6PD hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase 2 2
MIRT477326 EPHA2 EPH receptor A2 2 2
MIRT477831 DYRK3 dual specificity tyrosine phosphorylation regulated kinase 3 2 2
MIRT478572 CTNND1 catenin delta 1 2 4
MIRT479634 CD81 CD81 molecule 2 2
MIRT481950 ANKRD11 ankyrin repeat domain 11 2 2
MIRT483696 ZNF74 zinc finger protein 74 2 6
MIRT488798 MALT1 MALT1 paracaspase 2 2
MIRT489066 STARD3 StAR related lipid transfer domain containing 3 2 2
MIRT492533 PSMD11 proteasome 26S subunit, non-ATPase 11 2 2
MIRT492857 NRARP NOTCH regulated ankyrin repeat protein 2 2
MIRT496793 BTRC beta-transducin repeat containing E3 ubiquitin protein ligase 2 2
MIRT500122 ZNF106 zinc finger protein 106 2 4
MIRT505359 TMEM167A transmembrane protein 167A 2 2
MIRT506786 KLHL15 kelch like family member 15 2 6
MIRT510692 SRM spermidine synthase 2 6
MIRT515841 CEP104 centrosomal protein 104 2 4
MIRT516448 ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 motif 4 2 4
MIRT528855 PKP1 plakophilin 1 2 2
MIRT533848 TET3 tet methylcytosine dioxygenase 3 2 2
MIRT539025 ATXN7L1 ataxin 7 like 1 2 4
MIRT542872 NR6A1 nuclear receptor subfamily 6 group A member 1 2 2
MIRT546543 SATB2 SATB homeobox 2 2 2
MIRT554114 SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 2 2
MIRT560569 ZNF460 zinc finger protein 460 2 2
MIRT560796 EPM2AIP1 EPM2A interacting protein 1 2 2
MIRT562836 GCFC2 GC-rich sequence DNA-binding factor 2 2 2
MIRT563109 IFRD2 interferon related developmental regulator 2 2 2
MIRT564177 MRPL49 mitochondrial ribosomal protein L49 2 2
MIRT564283 ASB1 ankyrin repeat and SOCS box containing 1 2 2
MIRT564350 USP22 ubiquitin specific peptidase 22 2 2
MIRT565279 TNFRSF21 TNF receptor superfamily member 21 2 2
MIRT565338 TMEM104 transmembrane protein 104 2 2
MIRT565905 SCAMP2 secretory carrier membrane protein 2 2 2
MIRT567108 ITGB1 integrin subunit beta 1 2 2
MIRT567601 FANCF Fanconi anemia complementation group F 2 2
MIRT567779 DGAT2 diacylglycerol O-acyltransferase 2 2 2
MIRT568075 CENPQ centromere protein Q 2 2
MIRT624304 COL12A1 collagen type XII alpha 1 chain 2 2
MIRT644395 CDKL1 cyclin dependent kinase like 1 2 2
MIRT661547 ZNF674 zinc finger protein 674 2 4
MIRT670949 IRAK3 interleukin 1 receptor associated kinase 3 2 2
MIRT672951 AKAP5 A-kinase anchoring protein 5 2 2
MIRT697426 ZFP36 ZFP36 ring finger protein 2 2
MIRT700793 PIAS2 protein inhibitor of activated STAT 2 2 2
MIRT702657 ITGA3 integrin subunit alpha 3 2 2
MIRT708945 FZR1 fizzy and cell division cycle 20 related 1 2 2
MIRT713657 PLCE1 phospholipase C epsilon 1 2 2
MIRT719239 CYSLTR2 cysteinyl leukotriene receptor 2 2 2
MIRT719951 BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 2 2
MIRT722048 HLA-E major histocompatibility complex, class I, E 2 2
MIRT722201 URM1 ubiquitin related modifier 1 2 2
MIRT724790 C1D C1D nuclear receptor corepressor 2 2
MIRT734347 CYP2B6 cytochrome P450 family 2 subfamily B member 6 3 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-605 Anthranilamide-pyrazolo[1,5-a]pyrimidine NULL NULL Quantitative real-time PCR neuroblastoma cells 23992861 2013 up-regualted
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-605 Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-mir-605 Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-mir-605 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-mir-605 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-605-3p Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)

Error report submission