miRTarBase - #MIRT466738


—
pre-miRNA Information
pre-miRNA hsa-mir-3194   
Genomic Coordinates chr20: 51452905 - 51452977
Description Homo sapiens miR-3194 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3194-5p
Sequence 10| GGCCAGCCACCAGGAGGGCUG |30
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1344875175 4 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SYNJ2BP   
Synonyms ARIP2, OMP25
Description synaptojanin 2 binding protein
Transcript NM_018373   
Expression
Putative miRNA Targets on SYNJ2BP
3'UTR of SYNJ2BP
(miRNA target sites are highlighted)		 
>SYNJ2BP|NM_018373|3'UTR
   1 AAAACTTGCTCTCTTTCAATACTCCCAATGAAGATACATTTCACTCACCCTCCACCCCTGCTATTCTGCCATGTCTTTCC
  81 CTCTCTCTGCATAGCCAGATTTGAAGTGACTGATACCCACCCCAAACCTTGCTGTTCACAGTCTCCAATTCTTCATATTC
 161 TAATGGGAAAGTAAAGGTATTGTTTGAAGGAAAACTGAAGAAAAGACTTGGCTTAGAACAAATGAGGAGTTATATATTTT
 241 ACTAGGACTTTTGATAGAAATTCAGCTACAACCCAAAGAGAGAAAGATTGAGTCTTCCTGTCACCATAGGCAATACCTTT
 321 TTTCTTAGCTGGCATGCCATAAAGGCCAGCTATGTGATATTAGAGGAAGAAAGGATTTTTCTTTTTAATGATCTTCCTTG
 401 GGAAATTATTGTGGCCTTTATTTAATTTCTAACTACGTACCTGGGTGCCTATATCGACAAAGAGTGAGAAGAGCATTTTT
 481 ACTTTTTTAAAAAAGCAAATACATATATACACATACGTATGCAAATATTATAGTATAATAGTGATCCCTATGGAGAATTA
 561 AAGGTGAGAAAGCTACTTTGTGGTGTCTAGGTTTCTGATAAAAGGGATGATCTTAACTGAAGAATTTAAAGAGATACTTA
 641 AACAGAGCAAATGTAGTAGGAACAAGGGAGTGAGCCTTATAAGAGGACGTTCAGTCTCATTTATTAAAATAATAACTGAG
 721 ACTGGGAGAGGTGGCTCATGCCTGTAAATCCCAGCACTTTGGTAGCCTGAAGTGGGAGATTGCTTGAGTCCAGGAGACCA
 801 GCCTGGGCAACATAGCAAAACCTCATCTCTATTTAAAAAAAAAATAGAAAAAAATGTAATAACTGAAGCAACTAATTAAA
 881 AATCTTAGAAGAACAATATTTATTCTTATAACAGCCAACTATGGTGAGTTATTATAAGGTAAATTGCCATAATCCAGCGC
 961 TGCTCACATCTAAAAAACTTTGAGGTGTAAAGGTAAATCGTACCAATCTCTGGGCTGCCCTAGTGACTTTTTTGATACCT
1041 CAGAGTCCTATTGAAGAACCAGGTGGAATGATTGTGGTAAGGGCTATAGTGCTGGAGCCAAACACCCCAGCAAGAAAACT
1121 CTAAAAGGACAAAAGATAAGGTAGTGCCTCCAAGGTGGCACCTGAACCCTCTCAGGCTACTTTTTGGTTTCTACTAACAA
1201 ACCTGAGGGAAGGAACTGCCTCCCTGGCAGGATGGGCATCAAATCAACTCTGGCTTCAGATTTAGTTAAAATGAGGCCGG
1281 GTGCAGCGGCTCACACCTGTCATCTCAGCACTTTGGGAGGCCGAGGCAGGCAGATCACAAGGTCAGGAGTTCAAGACCAG
1361 CCTGGCCAACATGGTGAAACCCCATGTCTACTGAAAATACAAAAATTACCTGGACATGGTGGCGCGTTCCTGTAATTCCA
1441 GCTACTCAGGAGGCTGAGGCAGGAGAACTGTTTGAACCAGGACCTGGGAGACGGAGGTTGCAGTGAGCCAAGATCACGCC
1521 ACTGCACTCCAGCCTGGGCTACAGAGCAAGACTCCATCTCAAAAAAAGAAAGGCATGGATTGCTAGTATTTTTGAAAGGC
1601 TTTATACACTACATACGGCTTTTAATAAACCTTTTTGCAGCAAGAGGGAGGAAAAGAGTTTTGTTTGCTTTAGGAGGTAG
1681 GGAAATGTGGTAGGTGTTTCATGCGGCCTAGGAGGAGGATATGAATGAATGGATACTATGGAATGCCAGTGATCTCGATA
1761 AGGTGGGAACCATCCTGTTCATGTTCTTTTAAGGCTGGTTTTAAGCACTATGGGTAGCTGAATTTTCTGGCTTTAAGAAA
1841 ATCATTTCCATTAGCCAAATATATTGGCCATACTATAGGCCTTTTATAATTTTGTTAGCAAGATTATCAGGACTCAGGCA
1921 ATCAACTGTATTTCATTTCTAGCTTGGACAGTCTGGTAATTAAATGTTGATTGGACATCAGCTTTGTCAAGACACTTTTA
2001 CAAAGAAGTACAGTGCATATCCTCCATCCCATAGGGCTTTTGGGTTCCAACTGCGAAGACAACACTCTTATTGGCCACAT
2081 AGGTAGGACAGTGTAAGTAGGGGTCATGTTTATATTACAGACAGCAAAAGAGAAAAGTTACTGAGAACTGGGGCGTTTGA
2161 GAAAGTTACGTGGAGGAAAGGGACAAGTTGAAGACCCTTAAGGGCCTCACAGCCTAGTTAAGAGAATTCATAAACAGGTG
2241 AGAAGTTAAAAGTATATCAGCAGGCTAAGTATTGAAAACAATATTAAAGGGGTACCATGCAAAACACGATGCAGCAACAA
2321 AGAAGATATGCAGGTAATCATCACATTTTCTTTTAGAAATTCAGGGAAAAAAAGATGTCACATAATGGCATCAGGCTCAA
2401 TTGGAAAGGGAAGGCTTTTGAAAATAAGAGGTCCGGTAAGACCTTGCCTCTGGGTCACTACTGGTATAGGGAGAAACTTG
2481 CTTTAAACAGTCCTGACATAAAGTGCCTTTTGACATCAACTATTCAATACCTTTGAGACTCACTTAGACAACTGGACTCA
2561 TTGTAGGTTCCACAGAAAAACACGGACAACATTCTAGTTGTCACTCCAACCAGCCACACTAGGAGGGCACAGCCTCTGGT
2641 ACCCTTTCTGTTCCTGAAGGCATGTACAGCGGCTTCTACAGCAAGCTTGCTTACCTCCCAGGATTCACCTCATGGTTTGG
2721 ACACTGATTCCTGAGAGAGCCTTGAGACACACAAAGTGAAAAAAATGTCAAGCAGGAATGAAAGCTCTAGTTTTTTGCTT
2801 GTTGGTATATGTAAATTTGTTTAAAAAGTATCCATTCTGTCGTTGGTAGAAGTTTTGCTTTGGTTGATAATAGAGATTCT
2881 GATGTACTCTTATAACTTAGGTTTTCTCAGAAATTAAGTAGCATTGAAGATCAATGTAATACAGTTTTAAGCAGGTACAC
2961 TAATTATATTATTGATTCTATAGAAAACTAAAATTATAGATGAGGTATCAGGATCCATTATAGGTTGTAAAAAAATTCAT
3041 GTTCTTCATAGATTGAGTCTAATATTTCTTCTATAGATTGCATCTAATGTTCCTACTACCTAAATTATTACGTTCAAAGT
3121 TTTGAAAATTGAACGAAGGTATTTTTAAGTACTTAAAACATTTCTCTATCATTCTGTATTACATGTATAATTATAAGATA
3201 TTGTTTGCTTCAACTAGCTGTACTTTGTTTTCCTGTGAAGTTTCAACTTATGTGTTATCGATTTAACTTAATTGTTCCAT
3281 CTAGCCATGTATAATGGAAAAAGGAAGTTAATATTTGTTATTGTGTTCTATGCCAGGGACTGTACCAAACTCTGATTGGT
3361 ACATTATTTCATGTCTCATAACTCTGGGATCTAAGTATTGTCACAAAGAGACTAAAAATGAGAGAAAAAATTACTTGACT
3441 AGGATTATGTAGGTGGTAATAATAGAATCAGGATTTAAACTCAGGACTTCAGATGCCAGCATCAATGATATTCTCTCACT
3521 GGAAGTGGTTCTCAAAGCAAGGTCCTGACAAAAGCATCAGCGTTACTGGGGAACTTGTTAGAAAAGCAAGTTCATAGGCT
3601 GGGCATGGTGGCTCATGCCTGTAATCCCAGCACTCTAGGAGGCCTAGGCAGGTGGGTCACTTGAGCTCAGGAGTTTTGAG
3681 ACCAGCCTGCACAATGTGGTGAAACCCTGTCTTTACTAAAAGTCAAACAAATTAGTGGTGCATTCCTGTAGGCCCAGCTA
3761 CACGGGAGGATTGCTTGAGCCCAGGAGACTGAGGTGCAGTGAGCCGTGATTGCTCCACTTCATTCTAGCCTGAGCAACGG
3841 AGTGAGACCTTGTCTCAAAAACAAAAAAACAAACAAACAAAAAACAAAAAGCAAGTTCCCAGAAGAGAAAAAAGAAGTTC
3921 CAGACCTAGTGAATCAAAAACTCTGAGCGTGGCATCTCACAATCTGTGTTTTTGTAATCCTTCCAGGTGACTGATTCATG
4001 CTAAAGTTTGAGACTCATTGCTCTATGCCAGTCATCATTCCCTTTGCTCAGGTTAGAATCATCTGGAGAGCTTATAAACG
4081 TCCCCATGCCCAGGCTGCACACAGATCAATTAAAAGGAACCTCTGAGGGTGGGACTCAAGCAGCAGTAAAATAAAGTTCA
4161 TTGAGTGATTCTGGTGTGCAGCCGCAGTTGAAAATGTTATATAGCATTTAAACAAGACACTATTTAATTAAACACTATTT
4241 AAATTATTAAATTACATACATTGCTTCAGGCAAAACAACAACAACAACAACAACAACAAAAACTTGGGCCTTTAGAGCCC
4321 AGCTTCCTGAGCTTCTGCACGAAGTAAGTGGAACATTCATTTCTTCCTGATTTGCTAAGGATTGATCAACCTCCAGCAAA
4401 ATGTATGATTAGTGAGTGTTTCAGTTGGTGCATCAATTAAATGAGAACCAATCATAGAACATTGAAGCTAAAAAGGACCA
4481 GAGAGCTTCTAGGATGAATCTGTCTTAGAGATGAGAAAAATAAAGGCTCAGAGAGGGAAGCTAACTTAACTCTGATCAGA
4561 CTTAGTTTGTTGCAGAAGTGACCTTTCTGTCTCATATTTATGTCTTGAATATATTCACTACATGAATACACAGACTACCC
4641 ATTTTATCTTAGTCTACTTCTTTCTTCTCTCTTTGGGCCTGAATAAAGACCAGAACTGATAGACAGCTAAAGGATATTGC
4721 AAGCATCATTATTGGAATTGGGAGATTCCACAGAACAATCTGAGAATGATCTCATATCAAATCCAATCAGATGAGTTATT
4801 CTGAGACTAATTCCAATAGTTCTAGAGACTTTTTTTTTTATGGTGGACATTGTTTTTATTGTGTAAATAAGCAATTTTTA
4881 AAGTATATTTAAAGAAATGAAACATAAGGAAGTGTATAGGCTGTCAGGTATGTGGGGAAGTGAAGTTCATGTAGTTTTCA
4961 TGTGGAGCCCATACAGATTTTATTATAGTCAATTTTAGTGAAATTTATCGTTGGTCAGATGAAGGTTTTTTTCCTTCATT
5041 CAGCAAATAACTAATGACTGCCTACTATGTGCTAGGTGCCGAAGATAGAGAGATAAATAACACTTAGTCACTCTAAGCTG
5121 AAATTGCTCAGCATATGAAAGTGGAGGAATATTTGTAGGTGATTTTGATGTTAAAGTATTTTTTTAACATCACCTGGTAG
5201 TAGAAGATTGAGTTATGAAGCTGTCTACCTCTCACCTGTAATAGTTTTAGAGTTGGTTGCTATTTTGGTGTAAGTCTTTT
5281 TTGCTGTTCCTCTTTTAACTGCAAATCTTTTTGAGACCAGCACTCACATCCAAAAGGGCAATTGTGATAAAAAAGAAGAC
5361 AGTATTTTAAGGATTCTGATCAGAACCAGATTCTTTTCTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTC
5441 TTGCTCTGTCGCCTAGGCTGGAGTGCAGTGGCACGATCTCAGCTCACTGCAATCTCTGCCGCCCGGGTTCAAGCGATTCT
5521 CCTGCCTCAGCCTCCCCAGTAGTTGGGATTACAGGTGTGTGCCACAACGCCTGGCTAATTTTTGTATTTTTAGTAGACAC
5601 GGGGTTTCAGCATCTTGGCCAGGCTGGTCTTGAATTCCTGACCTCGTGATCCACCCATCTCGGCCTCCCAAAGTGCAGAA
5681 CCAGATTCTTAACTGCCACAGACTCTTGTATTATGTAATTTATATACAGAACACAAAGCACTTGATTTGCTTAACTGATG
5761 TACTTGATGATACTATAAAACCTATATTATGAGAAAGCATTGCTCCTTCAAAGGAATCAAGTGATAGCAAACACTCGGTC
5841 CTGTTTCCAGGTTTTCCTCACTGTTCATTTTGCCTTTGTTCTTGCAGGGGGAGAATGAAAGGGGCGAGAGCTAAAGTGTG
5921 TTGTCAATGCAAGTCAATCCTTAACCAACAATAATTTACAAAAGAACTTTATATTTGCTGTAATCATTAAATTTAGTTAC
6001 TAATCCCAGGAAAAGGGTTAGTCCTTCCTCCTAGTTTGTAGATTTGCAAATGGAGATGAATAATTGAATCCTATTTTAAT
6081 CTTTTATCTGCAGTAATCTGGGCTTCTTATTACCGGATATATTTGCATTTTACCTCCAGGCCATGTTAGTTCTTAGAAGA
6161 TTATTTTCCTCATGAACCCTGTTTTGTTTTGCTTCCTTTCTGCTTCAATTCTAATGTCACATTGCATACCTGGATGTAAA
6241 CAGCAGTCAGTTTCTCAGATCAAATAGAGCCCTGTAGCAACTTGGAAGACACAGAAGACACACGGACATAAAACTGTATT
6321 TATTATCCAGGGAATGTCACTACGGATTAATTATGTTAATGAGGCCATCAAAATCTATGGTAATCTTTCAGGCTTTGTTG
6401 TTTGATACCAGATACAGCAAATGAGATAATAATGTGTCTAATTGTGCCTAGCCAGTATTGGTATTTAATAAAACTTTGTC
6481 ATTGAATCTTTACAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' gucgGGAGGACC--ACCGACCGg 5'
              | ||:|||   ||||||: 
Target 5' tcagCATCTTGGCCAGGCTGGTc 3'
 5607 - 5629 139.00 -27.30
2 
miRNA  3' guCGGGAGGACCACCGACCGg 5'
            |::||::|   ||||||: 
Target 5' atGTTCTTTT-AAGGCTGGTt 3'
 1781 - 1800 134.00 -16.40
3 
miRNA  3' guCGGGA----GGACCACCGACCgg 5'
            ||:||    |||   ||||||  
Target 5' ttGCTCTGTCGCCT--AGGCTGGag 3'
 5441 - 5463 129.00 -16.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30471309 42 COSMIC
COSN30523828 57 COSMIC
COSN30112657 58 COSMIC
COSN13593865 94 COSMIC
COSN30456690 96 COSMIC
COSN30457273 103 COSMIC
COSN30451815 127 COSMIC
COSN30486047 134 COSMIC
COSN30101943 151 COSMIC
COSN30515639 163 COSMIC
COSN31560520 177 COSMIC
COSN31557763 205 COSMIC
COSN31661425 222 COSMIC
COSN28048732 233 COSMIC
COSN26507566 242 COSMIC
COSN23014676 319 COSMIC
COSN30541869 331 COSMIC
COSN16127917 374 COSMIC
COSN25708284 460 COSMIC
COSN31518454 488 COSMIC
COSN31582444 622 COSMIC
COSN1658306 771 COSMIC
COSN5389570 950 COSMIC
COSN31894083 1060 COSMIC
COSN8849021 1131 COSMIC
COSN27938833 1242 COSMIC
COSN8156541 1278 COSMIC
COSN30312412 1623 COSMIC
COSN1658305 2648 COSMIC
COSN23507703 3112 COSMIC
COSN31959639 3254 COSMIC
COSN2501652 3353 COSMIC
COSN1170612 3607 COSMIC
COSN20111435 4274 COSMIC
COSN2378146 4279 COSMIC
COSN20092856 4416 COSMIC
COSN15238659 4474 COSMIC
COSN17033935 4816 COSMIC
COSN14852157 4827 COSMIC
COSN23388180 4830 COSMIC
COSN20111434 4904 COSMIC
COSN4758749 5204 COSMIC
COSN20272283 5276 COSMIC
COSN20092855 5398 COSMIC
COSN2527459 5568 COSMIC
COSN25056301 6146 COSMIC
COSN22795327 6163 COSMIC
COSN22575132 6171 COSMIC
COSN8387154 6194 COSMIC
COSN6257609 6397 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs776148557 1 dbSNP
rs74324732 5 dbSNP
rs1322115122 6 dbSNP
rs1274876451 8 dbSNP
rs376670851 9 dbSNP
rs774963810 13 dbSNP
rs202186250 19 dbSNP
rs749661485 21 dbSNP
rs780495617 24 dbSNP
rs992967152 25 dbSNP
rs769994749 26 dbSNP
rs1208634609 27 dbSNP
rs765442650 28 dbSNP
rs200172973 29 dbSNP
rs924282007 29 dbSNP
rs1405349533 32 dbSNP
rs1284884334 33 dbSNP
rs376773956 35 dbSNP
rs751538982 37 dbSNP
rs768653306 37 dbSNP
rs1348317687 39 dbSNP
rs777672691 42 dbSNP
rs1238664666 43 dbSNP
rs1356136466 46 dbSNP
rs1314922353 47 dbSNP
rs968310279 49 dbSNP
rs765083835 56 dbSNP
rs3742917 57 dbSNP
rs1224261573 66 dbSNP
rs3742916 73 dbSNP
rs985656786 79 dbSNP
rs1197877114 81 dbSNP
rs1274190989 83 dbSNP
rs1256011300 85 dbSNP
rs1249240343 89 dbSNP
rs1481129776 97 dbSNP
rs1199516100 98 dbSNP
rs1376943333 104 dbSNP
rs1197958668 122 dbSNP
rs370826694 123 dbSNP
rs534722972 123 dbSNP
rs1396902953 125 dbSNP
rs1409206893 155 dbSNP
rs1290726356 162 dbSNP
rs1306387099 187 dbSNP
rs772016807 188 dbSNP
rs1230214789 201 dbSNP
rs949368927 202 dbSNP
rs1314785573 203 dbSNP
rs916583745 205 dbSNP
rs991514778 207 dbSNP
rs1230224872 224 dbSNP
rs374944316 229 dbSNP
rs1339128204 233 dbSNP
rs1329863637 234 dbSNP
rs3832974 242 dbSNP
rs1490742779 261 dbSNP
rs1222519684 279 dbSNP
rs1266089514 280 dbSNP
rs958304468 291 dbSNP
rs925467209 292 dbSNP
rs1166369202 298 dbSNP
rs1403242449 307 dbSNP
rs748003704 310 dbSNP
rs1166484681 312 dbSNP
rs774397758 315 dbSNP
rs1425572362 317 dbSNP
rs11844845 319 dbSNP
rs1441263433 330 dbSNP
rs1008598766 335 dbSNP
rs1012773338 345 dbSNP
rs1326363359 349 dbSNP
rs143254959 352 dbSNP
rs572988633 359 dbSNP
rs1361100427 363 dbSNP
rs149132579 373 dbSNP
rs1177897349 375 dbSNP
rs1264542097 377 dbSNP
rs1056934731 382 dbSNP
rs934410492 387 dbSNP
rs1266092639 406 dbSNP
rs188537412 407 dbSNP
rs866199559 409 dbSNP
rs1291254592 411 dbSNP
rs954410604 414 dbSNP
rs1241195010 416 dbSNP
rs763179097 422 dbSNP
rs1042759404 433 dbSNP
rs1356262532 436 dbSNP
rs1028644465 437 dbSNP
rs1367011404 439 dbSNP
rs947023316 440 dbSNP
rs996518587 445 dbSNP
rs1388489030 447 dbSNP
rs1369003159 449 dbSNP
rs1339310921 451 dbSNP
rs1295806360 453 dbSNP
rs899097508 455 dbSNP
rs1311564672 473 dbSNP
rs1319557342 481 dbSNP
rs145114408 488 dbSNP
rs1260823598 498 dbSNP
rs1327913821 499 dbSNP
rs1206720442 502 dbSNP
rs1004725337 506 dbSNP
rs1461600395 515 dbSNP
rs1181077863 516 dbSNP
rs886235316 517 dbSNP
rs954271201 526 dbSNP
rs1159875673 528 dbSNP
rs1411286964 531 dbSNP
rs1455752771 535 dbSNP
rs1179188069 538 dbSNP
rs1407552905 542 dbSNP
rs1378224197 560 dbSNP
rs116337498 571 dbSNP
rs1301474519 575 dbSNP
rs1376454770 589 dbSNP
rs976906553 598 dbSNP
rs1392802599 599 dbSNP
rs1433695376 600 dbSNP
rs367667124 635 dbSNP
rs916614580 636 dbSNP
rs1226111189 641 dbSNP
rs1005536656 643 dbSNP
rs1324208331 645 dbSNP
rs1209105797 647 dbSNP
rs1254061951 648 dbSNP
rs748793091 664 dbSNP
rs1177972896 678 dbSNP
rs952694147 679 dbSNP
rs1268325800 680 dbSNP
rs1055115391 683 dbSNP
rs936644809 687 dbSNP
rs925572359 688 dbSNP
rs978716517 689 dbSNP
rs1284317748 708 dbSNP
rs1414421958 730 dbSNP
rs1174346941 731 dbSNP
rs1013240126 737 dbSNP
rs552828900 744 dbSNP
rs1313167963 751 dbSNP
rs1303991327 764 dbSNP
rs895697308 765 dbSNP
rs966888272 768 dbSNP
rs375483757 776 dbSNP
rs1369565009 783 dbSNP
rs1057381058 784 dbSNP
rs1287928646 788 dbSNP
rs1218011556 789 dbSNP
rs998672136 790 dbSNP
rs1368168306 792 dbSNP
rs912721481 792 dbSNP
rs866816657 801 dbSNP
rs987210309 802 dbSNP
rs1299162713 805 dbSNP
rs1042809883 810 dbSNP
rs947077061 812 dbSNP
rs954443230 835 dbSNP
rs1050060204 839 dbSNP
rs779439189 843 dbSNP
rs1053494 845 dbSNP
rs1269731871 845 dbSNP
rs201897094 845 dbSNP
rs922854294 846 dbSNP
rs1168367140 848 dbSNP
rs1389121940 855 dbSNP
rs977338100 855 dbSNP
rs995866909 856 dbSNP
rs1349931445 864 dbSNP
rs1435198481 875 dbSNP
rs1291708959 891 dbSNP
rs140303366 893 dbSNP
rs1016183102 894 dbSNP
rs773204373 894 dbSNP
rs554674559 896 dbSNP
rs1004802850 905 dbSNP
rs1466306425 908 dbSNP
rs908655992 909 dbSNP
rs984165625 912 dbSNP
rs886308773 916 dbSNP
rs1173834380 921 dbSNP
rs1024803739 923 dbSNP
rs1486494703 924 dbSNP
rs1188286497 934 dbSNP
rs1012898149 946 dbSNP
rs1446875548 948 dbSNP
rs1013702913 955 dbSNP
rs536037049 958 dbSNP
rs745534822 959 dbSNP
rs781569275 960 dbSNP
rs1204798725 968 dbSNP
rs903016916 973 dbSNP
rs1483759566 974 dbSNP
rs1021419343 977 dbSNP
rs1454439332 978 dbSNP
rs562594991 981 dbSNP
rs1284934842 982 dbSNP
rs184595318 987 dbSNP
rs903815078 999 dbSNP
rs1042679206 1000 dbSNP
rs745445237 1013 dbSNP
rs751991268 1014 dbSNP
rs1050532514 1015 dbSNP
rs921733309 1031 dbSNP
rs550761975 1060 dbSNP
rs1188678730 1065 dbSNP
rs532527803 1084 dbSNP
rs986945451 1086 dbSNP
rs1472273954 1097 dbSNP
rs1179569189 1099 dbSNP
rs1409490754 1100 dbSNP
rs932791053 1103 dbSNP
rs1219859305 1119 dbSNP
rs1386368393 1121 dbSNP
rs1337790241 1123 dbSNP
rs1470800732 1123 dbSNP
rs1334596010 1130 dbSNP
rs1340059029 1141 dbSNP
rs147811371 1144 dbSNP
rs974858715 1146 dbSNP
rs963117643 1147 dbSNP
rs1281541867 1159 dbSNP
rs1016337334 1160 dbSNP
rs1351172655 1168 dbSNP
rs1396293279 1176 dbSNP
rs747944711 1182 dbSNP
rs546056911 1192 dbSNP
rs776148350 1215 dbSNP
rs908705821 1219 dbSNP
rs984217930 1222 dbSNP
rs74065325 1224 dbSNP
rs915969813 1228 dbSNP
rs758920335 1235 dbSNP
rs1024874353 1237 dbSNP
rs1013439330 1242 dbSNP
rs1253600227 1247 dbSNP
rs1469227815 1248 dbSNP
rs1472595826 1261 dbSNP
rs1180845552 1263 dbSNP
rs991929612 1266 dbSNP
rs894939801 1271 dbSNP
rs1033773658 1278 dbSNP
rs1401212330 1279 dbSNP
rs144404105 1287 dbSNP
rs1371402884 1288 dbSNP
rs140439111 1292 dbSNP
rs967253630 1319 dbSNP
rs1021471750 1322 dbSNP
rs1042351521 1323 dbSNP
rs1274824856 1325 dbSNP
rs147161181 1326 dbSNP
rs891388329 1330 dbSNP
rs1276264960 1344 dbSNP
rs1028727998 1346 dbSNP
rs1203763037 1349 dbSNP
rs1051251462 1350 dbSNP
rs997614645 1367 dbSNP
rs1199476978 1371 dbSNP
rs1377070165 1379 dbSNP
rs932822387 1380 dbSNP
rs1182201659 1385 dbSNP
rs921428067 1398 dbSNP
rs1429380186 1400 dbSNP
rs1306447105 1401 dbSNP
rs556255355 1422 dbSNP
rs901505588 1423 dbSNP
rs974554608 1423 dbSNP
rs941764610 1424 dbSNP
rs1041725902 1425 dbSNP
rs571539815 1426 dbSNP
rs112312649 1439 dbSNP
rs1315481562 1444 dbSNP
rs887339692 1448 dbSNP
rs1245056283 1449 dbSNP
rs1227187628 1452 dbSNP
rs950334698 1465 dbSNP
rs1048559945 1468 dbSNP
rs1024905405 1474 dbSNP
rs1489174200 1480 dbSNP
rs1209922008 1481 dbSNP
rs1266511085 1483 dbSNP
rs1449813475 1487 dbSNP
rs992038823 1492 dbSNP
rs1248376306 1493 dbSNP
rs1448697528 1507 dbSNP
rs916006538 1510 dbSNP
rs1370487152 1513 dbSNP
rs959275964 1517 dbSNP
rs576772837 1518 dbSNP
rs559017639 1523 dbSNP
rs534520845 1525 dbSNP
rs1389155310 1533 dbSNP
rs566792938 1546 dbSNP
rs759756936 1547 dbSNP
rs1333242765 1552 dbSNP
rs1000979830 1554 dbSNP
rs968556070 1560 dbSNP
rs1464034125 1561 dbSNP
rs776693856 1562 dbSNP
rs1020965603 1566 dbSNP
rs563809214 1568 dbSNP
rs891085502 1572 dbSNP
rs1051326298 1573 dbSNP
rs1294866042 1585 dbSNP
rs928660753 1604 dbSNP
rs1244816269 1607 dbSNP
rs1264378029 1608 dbSNP
rs1353690201 1609 dbSNP
rs113940572 1611 dbSNP
rs1210488832 1613 dbSNP
rs1268757297 1616 dbSNP
rs997501799 1616 dbSNP
rs61977541 1617 dbSNP
rs1038927927 1623 dbSNP
rs1424649681 1630 dbSNP
rs1187155292 1654 dbSNP
rs1366774825 1661 dbSNP
rs1458941284 1670 dbSNP
rs192255958 1673 dbSNP
rs1388560004 1674 dbSNP
rs774346304 1677 dbSNP
rs1304980717 1679 dbSNP
rs1444336928 1684 dbSNP
rs1047479822 1687 dbSNP
rs1380832192 1696 dbSNP
rs928959007 1704 dbSNP
rs990010081 1705 dbSNP
rs917588174 1707 dbSNP
rs1029197698 1708 dbSNP
rs1209849600 1709 dbSNP
rs1328421281 1711 dbSNP
rs1206545098 1717 dbSNP
rs1357865909 1718 dbSNP
rs1289079159 1721 dbSNP
rs1483484043 1727 dbSNP
rs997266060 1738 dbSNP
rs966149929 1740 dbSNP
rs1473577937 1741 dbSNP
rs1014593473 1742 dbSNP
rs992104308 1756 dbSNP
rs959533064 1757 dbSNP
rs1471912201 1774 dbSNP
rs768653659 1775 dbSNP
rs1311244501 1780 dbSNP
rs887391799 1790 dbSNP
rs1465903642 1795 dbSNP
rs1301890361 1803 dbSNP
rs1373243301 1810 dbSNP
rs1411066946 1814 dbSNP
rs1288463930 1837 dbSNP
rs189115932 1844 dbSNP
rs1444458730 1849 dbSNP
rs1335168906 1854 dbSNP
rs1303396113 1856 dbSNP
rs926536454 1862 dbSNP
rs569049505 1875 dbSNP
rs1254430681 1878 dbSNP
rs371789738 1880 dbSNP
rs1048609979 1887 dbSNP
rs762800513 1894 dbSNP
rs995673587 1896 dbSNP
rs117225615 1898 dbSNP
rs967871757 1899 dbSNP
rs894636409 1904 dbSNP
rs1020995129 1909 dbSNP
rs1009603021 1915 dbSNP
rs955406933 1926 dbSNP
rs1431221113 1928 dbSNP
rs1308311959 1930 dbSNP
rs1381304222 1935 dbSNP
rs1160899372 1939 dbSNP
rs1259670481 1948 dbSNP
rs775022083 1954 dbSNP
rs1439480496 1956 dbSNP
rs938782679 1980 dbSNP
rs997134070 1983 dbSNP
rs1385967169 1987 dbSNP
rs900104391 1988 dbSNP
rs1301014662 1991 dbSNP
rs1344088825 1991 dbSNP
rs769207366 1993 dbSNP
rs1200228532 1995 dbSNP
rs1274259328 2008 dbSNP
rs142523656 2012 dbSNP
rs755361213 2014 dbSNP
rs1190022965 2016 dbSNP
rs183733430 2021 dbSNP
rs990062219 2023 dbSNP
rs745425604 2031 dbSNP
rs929033978 2036 dbSNP
rs921793614 2043 dbSNP
rs1407659225 2050 dbSNP
rs1166324888 2052 dbSNP
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rs527605967 2071 dbSNP
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rs1290644366 2100 dbSNP
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rs903792062 5475 dbSNP
rs1216744188 5477 dbSNP
rs565237495 5478 dbSNP
rs1420864524 5486 dbSNP
rs1044032917 5488 dbSNP
rs533481441 5491 dbSNP
rs1410243592 5493 dbSNP
rs1212222674 5496 dbSNP
rs1175484599 5500 dbSNP
rs181465620 5501 dbSNP
rs1180278256 5504 dbSNP
rs1031688179 5505 dbSNP
rs541684332 5514 dbSNP
rs1158096245 5518 dbSNP
rs1201902064 5528 dbSNP
rs189983865 5534 dbSNP
rs1265276379 5552 dbSNP
rs1358884796 5555 dbSNP
rs933756823 5556 dbSNP
rs1300671330 5559 dbSNP
rs1378616879 5563 dbSNP
rs1240484021 5564 dbSNP
rs966032169 5568 dbSNP
rs1220813120 5571 dbSNP
rs918323869 5578 dbSNP
rs1019654862 5600 dbSNP
rs1239824561 5601 dbSNP
rs1458368101 5604 dbSNP
rs1007803437 5608 dbSNP
rs972396263 5609 dbSNP
rs1378482538 5617 dbSNP
rs1455649203 5621 dbSNP
rs1173617744 5624 dbSNP
rs1425117134 5634 dbSNP
rs562189588 5644 dbSNP
rs142056950 5645 dbSNP
rs184611973 5646 dbSNP
rs1447055214 5654 dbSNP
rs139777210 5661 dbSNP
rs1023826720 5662 dbSNP
rs1438016354 5670 dbSNP
rs1284776540 5675 dbSNP
rs752526319 5678 dbSNP
rs939686612 5682 dbSNP
rs906858582 5687 dbSNP
rs1046088315 5698 dbSNP
rs1455154099 5707 dbSNP
rs1318420020 5708 dbSNP
rs1198181308 5713 dbSNP
rs146386783 5714 dbSNP
rs1453357498 5717 dbSNP
rs142166761 5726 dbSNP
rs1246250578 5732 dbSNP
rs1477317748 5742 dbSNP
rs1456737096 5757 dbSNP
rs1424704580 5763 dbSNP
rs1430120967 5773 dbSNP
rs140111698 5775 dbSNP
rs989954061 5784 dbSNP
rs1397714759 5790 dbSNP
rs1007220703 5797 dbSNP
rs1330063529 5804 dbSNP
rs1434210959 5825 dbSNP
rs889682670 5826 dbSNP
rs532994287 5830 dbSNP
rs1187415500 5836 dbSNP
rs76893222 5837 dbSNP
rs933807368 5838 dbSNP
rs1210724984 5844 dbSNP
rs371429424 5853 dbSNP
rs8014629 5857 dbSNP
rs149575641 5865 dbSNP
rs780229316 5868 dbSNP
rs953674495 5869 dbSNP
rs1191917852 5874 dbSNP
rs970055903 5887 dbSNP
rs1044527 5889 dbSNP
rs995013506 5890 dbSNP
rs1311177496 5892 dbSNP
rs1361050429 5893 dbSNP
rs897958339 5895 dbSNP
rs1350994233 5901 dbSNP
rs551096090 5905 dbSNP
rs1245710221 5906 dbSNP
rs1283835134 5912 dbSNP
rs1003951486 5913 dbSNP
rs1218929067 5917 dbSNP
rs1286881640 5925 dbSNP
rs906884386 5927 dbSNP
rs1258700949 5930 dbSNP
rs1443362201 5932 dbSNP
rs1045417649 5934 dbSNP
rs1367561179 5936 dbSNP
rs6573956 5940 dbSNP
rs894405244 5944 dbSNP
rs1006880036 5964 dbSNP
rs1054259851 5968 dbSNP
rs1404015051 5977 dbSNP
rs543030600 5990 dbSNP
rs1464621092 5993 dbSNP
rs1333706465 6000 dbSNP
rs935875438 6005 dbSNP
rs1171436271 6016 dbSNP
rs924440593 6017 dbSNP
rs1430635308 6024 dbSNP
rs566420032 6033 dbSNP
rs1353165606 6049 dbSNP
rs944791214 6056 dbSNP
rs1238530378 6059 dbSNP
rs1258304491 6060 dbSNP
rs911940923 6071 dbSNP
rs1200202214 6082 dbSNP
rs1254570377 6088 dbSNP
rs543335496 6097 dbSNP
rs1180194031 6105 dbSNP
rs1238182505 6109 dbSNP
rs548085011 6109 dbSNP
rs1044534 6114 dbSNP
rs1036788024 6115 dbSNP
rs752368782 6121 dbSNP
rs953327285 6123 dbSNP
rs1171757641 6132 dbSNP
rs1403714715 6133 dbSNP
rs562280961 6143 dbSNP
rs920850609 6146 dbSNP
rs1482654814 6153 dbSNP
rs1251485450 6159 dbSNP
rs1389773782 6161 dbSNP
rs754572579 6161 dbSNP
rs909603258 6168 dbSNP
rs973650412 6169 dbSNP
rs1044538 6171 dbSNP
rs180987174 6172 dbSNP
rs1305528061 6178 dbSNP
rs760095081 6180 dbSNP
rs754826715 6181 dbSNP
rs1246445169 6182 dbSNP
rs971182640 6190 dbSNP
rs188983076 6192 dbSNP
rs1384833197 6196 dbSNP
rs753757496 6202 dbSNP
rs1334639765 6205 dbSNP
rs1394325561 6213 dbSNP
rs1024440569 6222 dbSNP
rs1306922656 6228 dbSNP
rs1012585498 6263 dbSNP
rs960913342 6276 dbSNP
rs1463778325 6281 dbSNP
rs894143391 6288 dbSNP
rs1399791375 6292 dbSNP
rs545919027 6303 dbSNP
rs544853407 6304 dbSNP
rs1368481089 6318 dbSNP
rs1386637328 6325 dbSNP
rs1281945464 6333 dbSNP
rs1044541 6343 dbSNP
rs111717572 6344 dbSNP
rs1257865630 6355 dbSNP
rs968567733 6359 dbSNP
rs1202078126 6366 dbSNP
rs1266698106 6367 dbSNP
rs1488525838 6373 dbSNP
rs117184865 6377 dbSNP
rs1422696806 6386 dbSNP
rs1022362035 6390 dbSNP
rs1250673628 6400 dbSNP
rs367886059 6413 dbSNP
rs555296664 6417 dbSNP
rs954041104 6426 dbSNP
rs911989895 6432 dbSNP
rs1050904155 6433 dbSNP
rs1481907168 6437 dbSNP
rs192644468 6439 dbSNP
rs1301792581 6442 dbSNP
rs920578656 6447 dbSNP
rs576093837 6455 dbSNP
rs897056299 6461 dbSNP
rs375278723 6471 dbSNP
rs1314452233 6478 dbSNP
rs962306154 6488 dbSNP
rs908089022 6493 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' gucGGGAGGACCACCGACCGg 5'
             |::|::|  | |||||| 
Target 5' uacCUUUUUUCUUAGCUGGCa 3'
 		12 - 32
2 
miRNA  3' gucgggaggaccaCCGaccgg 5'
                       |||     
Target 5' -------accauaGGCaauac 3'
 		1 - 14
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000256366.4 | 3UTR | ACCAUAGGCAAUACCUUUUUUCUUAGCUGGCAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
LIHC 0.462 0.01 0.193 0.19 23 Click to see details
UCEC 0.906 0.02 0.800 0.05 5 Click to see details
PRAD 0.804 0.1 1.000 0.5 4 Click to see details
CHOL 0.889 0.15 1.000 0.5 3 Click to see details
LUSC -0.481 0.21 -0.300 0.31 5 Click to see details
BRCA -0.332 0.21 -0.619 0.05 8 Click to see details
KICH -0.443 0.23 -0.500 0.2 5 Click to see details
KIRP -0.421 0.29 -0.200 0.4 4 Click to see details
STAD -0.136 0.35 -0.200 0.29 10 Click to see details
KIRC -0.277 0.36 -0.400 0.3 4 Click to see details
HNSC 0.269 0.37 0.200 0.4 4 Click to see details
THCA 0.006 0.49 -0.080 0.36 22 Click to see details
THCA 0.006 0.49 -0.080 0.36 22 Click to see details
THCA 0.006 0.49 -0.080 0.36 22 Click to see details
72 hsa-miR-3194-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT443250 C9orf170 chromosome 9 open reading frame 170 2 2
MIRT443284 ZC3H12A zinc finger CCCH-type containing 12A 2 2
MIRT461518 EMC7 ER membrane protein complex subunit 7 2 2
MIRT466738 SYNJ2BP synaptojanin 2 binding protein 2 2
MIRT467651 SLC7A1 solute carrier family 7 member 1 2 2
MIRT472998 MRPS23 mitochondrial ribosomal protein S23 2 4
MIRT477911 DUSP2 dual specificity phosphatase 2 2 2
MIRT480853 BLCAP bladder cancer associated protein 2 2
MIRT482890 IAH1 isoamyl acetate-hydrolyzing esterase 1 homolog 2 4
MIRT487295 SLC38A9 solute carrier family 38 member 9 2 2
MIRT488494 SFMBT2 Scm like with four mbt domains 2 2 4
MIRT489060 STARD3 StAR related lipid transfer domain containing 3 2 2
MIRT491209 MLLT1 MLLT1, super elongation complex subunit 2 4
MIRT491479 APC2 APC2, WNT signaling pathway regulator 2 8
MIRT492558 PRX periaxin 2 6
MIRT495499 SLC39A2 solute carrier family 39 member 2 2 2
MIRT496578 ZNF280D zinc finger protein 280D 2 2
MIRT496840 KCNIP2 potassium voltage-gated channel interacting protein 2 2 2
MIRT497840 CHD1 chromodomain helicase DNA binding protein 1 2 2
MIRT499396 PLCG2 phospholipase C gamma 2 2 7
MIRT503237 C16orf74 chromosome 16 open reading frame 74 2 4
MIRT512345 ZNF665 zinc finger protein 665 2 4
MIRT512527 ATCAY ATCAY, caytaxin 2 4
MIRT513160 PPIB peptidylprolyl isomerase B 2 2
MIRT514493 STOML1 stomatin like 1 2 2
MIRT517164 SLC28A1 solute carrier family 28 member 1 2 2
MIRT520463 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT524151 DIP2A disco interacting protein 2 homolog A 2 2
MIRT530324 TNFRSF10D TNF receptor superfamily member 10d 2 2
MIRT533747 TMEM184B transmembrane protein 184B 2 2
MIRT534259 SLC12A7 solute carrier family 12 member 7 2 2
MIRT561273 ZDHHC18 zinc finger DHHC-type containing 18 2 2
MIRT569126 TMC5 transmembrane channel like 5 2 4
MIRT569937 RAB8A RAB8A, member RAS oncogene family 2 2
MIRT570073 VPS8 VPS8, CORVET complex subunit 2 2
MIRT570636 KLF13 Kruppel like factor 13 2 2
MIRT571026 CENPP centromere protein P 2 2
MIRT573838 ZWINT ZW10 interacting kinetochore protein 2 2
MIRT574899 Plcg2 phospholipase C, gamma 2 2 5
MIRT576070 Poteg POTE ankyrin domain family, member G 2 2
MIRT576753 Tmem127 transmembrane protein 127 2 2
MIRT611795 WNT9A Wnt family member 9A 2 2
MIRT616756 SVOP SV2 related protein 2 2
MIRT630965 NGDN neuroguidin 2 2
MIRT634555 LYVE1 lymphatic vessel endothelial hyaluronan receptor 1 2 2
MIRT638646 GK5 glycerol kinase 5 (putative) 2 2
MIRT639903 SRGAP2 SLIT-ROBO Rho GTPase activating protein 2 2 2
MIRT640529 TET3 tet methylcytosine dioxygenase 3 2 4
MIRT644529 TMEM134 transmembrane protein 134 2 2
MIRT644887 C2orf50 chromosome 2 open reading frame 50 2 2
MIRT647729 CXCR2 C-X-C motif chemokine receptor 2 2 2
MIRT648086 FAM192A family with sequence similarity 192 member A 2 2
MIRT650808 PGRMC1 progesterone receptor membrane component 1 2 2
MIRT660505 ARPC2 actin related protein 2/3 complex subunit 2 2 2
MIRT667193 NODAL nodal growth differentiation factor 2 2
MIRT685675 PSMB7 proteasome subunit beta 7 2 2
MIRT692710 MEAF6 MYST/Esa1 associated factor 6 2 2
MIRT693598 SLC39A1 solute carrier family 39 member 1 2 2
MIRT698059 TRIOBP TRIO and F-actin binding protein 2 2
MIRT698292 TMEM2 transmembrane protein 2 2 2
MIRT702353 KLHL26 kelch like family member 26 2 2
MIRT708623 NUDT18 nudix hydrolase 18 2 2
MIRT714289 KBTBD11 kelch repeat and BTB domain containing 11 2 2
MIRT714577 WDR41 WD repeat domain 41 2 2
MIRT716734 APOL6 apolipoprotein L6 2 2
MIRT718781 RAC3 Rac family small GTPase 3 2 2
MIRT720973 ZBTB43 zinc finger and BTB domain containing 43 2 2
MIRT720986 TOM1 target of myb1 membrane trafficking protein 2 2
MIRT721391 LDLRAD4 low density lipoprotein receptor class A domain containing 4 2 2
MIRT722905 COA4 cytochrome c oxidase assembly factor 4 homolog 2 2
MIRT723205 ZNRF1 zinc and ring finger 1 2 2
MIRT725431 HIVEP3 human immunodeficiency virus type I enhancer binding protein 3 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-3194 Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-mir-3194 Cisplatin 5460033 NSC119875 approved sensitive cell line (W1)
hsa-mir-3194 Doxorubicin 31703 NSC123127 approved sensitive cell line (W1)
hsa-mir-3194 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-3194-5p Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-3194-5p Fluorouracil 3385 NSC19893 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-3194-5p Platinum 23939 sensitive High Ovarian Cancer tissue
hsa-miR-3194-5p Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-3194-5p Cisplatin 5460033 NSC119875 approved resistant Low Hepatocellular Carcinoma cell line (HepG2)
hsa-miR-3194-5p Temozolomide 5394 NSC362856 approved resistant High Glioblastoma cell line (A172)
hsa-miR-3194-5p Estradiol 5757 NSC9895 approved sensitive Low Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-3194-5p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-3194-5p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-3194-5p Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-3194-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-3194-5p Osimertinib 71496458 NSC779217 approved resistant cell line (H1975)
hsa-miR-3194-5p Platinum 23939 resistant tissue
hsa-miR-3194-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3194-5p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-3194-5p Gemcitabine 60750 NSC613327 approved resistant cell line (Panc1-GR4)
hsa-miR-3194-5p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-3194-5p Cisplatin 5460033 NSC119875 approved resistant cell line (MDAH-2774)
hsa-miR-3194-5p Cisplatin 5460033 NSC119875 approved resistant cell line (TOV-112D)
hsa-miR-3194-5p Cisplatin 5460033 NSC119875 approved resistant cell line (OVSAHO)

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