miRTarBase - #MIRT466768


—
pre-miRNA Information
pre-miRNA hsa-mir-2681   
Genomic Coordinates chr13: 101967642 - 101967746
Description Homo sapiens miR-2681 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-2681-3p
Sequence 61| UAUCAUGGAGUUGGUAAAGCAC |82
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs893763121 2 dbSNP
rs1239476423 8 dbSNP
rs1304343828 10 dbSNP
rs1347238327 15 dbSNP
rs1217911872 19 dbSNP
Putative Targets

Gene Information
Gene Symbol SYNCRIP   
Synonyms GRY-RBP, GRYRBP, HNRNPQ, HNRPQ1, NSAP1, PP68, hnRNP-Q
Description synaptotagmin binding cytoplasmic RNA interacting protein
Transcript NM_001159673   
Other Transcripts NM_001159674 , NM_001159675 , NM_001159676 , NM_001159677 , NM_006372   
Expression
Putative miRNA Targets on SYNCRIP
3'UTR of SYNCRIP
(miRNA target sites are highlighted)		 
>SYNCRIP|NM_001159673|3'UTR
   1 AGACTGACTTGCTATGTGGGATTACACCAGAAGCTTGCAGTGGAGTAATGGTAAGGAAATCAAGCAACCTTAAATATGTC
  81 GGCTGTATAGGAGCATATTCTATTGCAGAAGACCTTCCTATGAAGATCATGGAATCAAATACGGGACATTGAACTAATAC
 161 TTGGACTTTGATATGAATTTCTTTAACAATTTTCTCTGCAGTGCAAGTTATTAAACTAAAGCTACTCTATTTTCAAAATG
 241 TGTTCCAACAGAAATCCTTCATAACTCCTAGCATGGTATCTTAATAAAGAATAAAGTTCTTTTAAAAATCTGCTCTAAGT
 321 AGATTTTTCCCCTTTTTTAAATTAAGGATCCCAACAGTGGTATTTTGAAATATTCTCTTGAATTTGTGCATTTAAATTTT
 401 ATTGCAGTGGTATAGATGAATGCCACTGATGGTATCCTTAAATTTTATTTCTGCTCACCAAGGTTAATCATGATTGTCTA
 481 TATCTTTTTTATAGTGATCACTTTTGAATTGTGTTCAGATATGCAGTTTCAGGTGTAATCATCAGAGCTGGTTAGTCAGG
 561 CATTCCAGATAGTGGTTCTTTTCAGAACCTTTTTAAAAGGGTTGGTTAACTACCTCAGTAGCAGAGGATTGAACTATACC
 641 CTGTCTGTACTGTACATAGAAAATCTTTGTAGATAAAAGCAAGGCTTGTTAAATATGATATGAGGGTAAGATTTTAATAT
 721 ACCAAATGTAACATTCTTAGTTGCCTTTAGTTTCAGAGGCTTGTAAGACTTCCTCATGACCATCATAACAGGCCTTGCTT
 801 TTGTCGTATTTTGTGGCTGAAAAAGCAGCCTTGCTTCTTCAGATATTGTAGTTATTTGGATGTATAATAGTTTAGCAAGA
 881 TGTTACTTTTGTAAGACATCAGATGTTCAAAAAAGTGCATCCGAACTTGTACTAAATACTGCAGTGTCCCTTTATAAAAA
 961 GTCAGACTAAAACTGACAATTGTACAGCGAAGCCTGACATTTGGATATTTTGAAGTTTTTTCATAAATCATAGAAATTAG
1041 TATATGGCTGTAGTTTAGCTTTTTAGGTAAAAGGTATGTTTCATTAGTGCATTTCTTCCTGCTGATCACTGTAAACATGT
1121 GAATCAGCTTTCCATTTCTTATGCAGGTCATGATAACTTGTAGAGTAGAGTACAATCATTTGTGCTATGTTTTTAATTTT
1201 CTAAAGCACCTTGATGACAGTGAGTGTCCAGTGGTGAAGCATCCTCTATTGAACCACCCTCAAAAATTTTTTTGCCAAGT
1281 CCTAAGTTGATAGCTTAAAGTAAAAAGTGAAAATTATAGTTTCATTAGGACTTGGTGTAAAGAAATCCCCTCCCCCCTTC
1361 CCCAAAGGGATACTGCAGTTATATCACATACCCAATAGGCACCACGATGAAGATCAGAGCTTATACTTAATTAAGGTTTT
1441 ATACACACCAGTTCCCCAGTAAATGCAAATTTAACAAGAAAATCAGACATGTCATATGTTCAAAATGCTCATGGCAAACA
1521 ATCATTTTGCATTCCTGCAAATAAAATTGTTTTATACTGTAAGCTGGAGGCGAGTGTAACTTATTTTTGTAATAAAGTTT
1601 TTATTTTTTTTATGTGTCATTAATATAAATGTGTGTTAGTGTAGAAATCTTCTGGTTTAAAAACTTAGAATTGCACACAT
1681 TTCAGTATGTTTATTTGTACTTACATAATTTTAGAATAGTGGTTGCCAATAGCCTGTATGTTTCACATTAATTGGTTTTT
1761 TGTTATCTAAATAAATCATTTTAGTATGTTGTATGTCAGTTACTGGGATAGCTGGGACATAGAGTGTAATTTAAAATTTG
1841 TCAATAAGTATTCATTGGAATATATGTAAATGTGCCTTGCCGGTTATTGAAACTTATCTACAAAATGAGTATGGGGTGAC
1921 AAAAATTAGTTCCTGGTGCTTAATGAAACTTTCTGCCACTGATTTTATATATTACCCCGTGCTTTTTTAAAGTACATCTC
2001 TCTCAAAACTTAGTGTAAGTTTGAGGGCTACACAAAACATTTACATTTCATTCTAACATAATGAATATAATAGGTTGTGG
2081 AAAGTGGGTAAACTAAATGTAGCCTTCAGTAAAATTGAATCTCAGTGTAATCCTTGGTGCTGGCATTTCTCAGTTCCGAG
2161 GAGTTAAATGATCCCATCTAAGAGGTCATTGCCATGCCTATTGGCACTTTACTGTCATAGCATTTTTAAGGGACACTGTC
2241 AAGGTGTTTAAGTTCTCAGAATTACTTGTTGGGATTTTAGGACAGGTTTGTTTACTTAAAGTAAGAACTGCATTGTCAAA
2321 GTTGAAAGAGGAACACTTTTGTGAGTTCACAAATGTGTTCTTAAGAAAACATTAAAATATGGAGCTCTGGGTTTTCAAGA
2401 CTATTTGGCATTCTTAATTTGGGGACTTGGGAGGGAAACTGATAAAAAGAAATTGAAGAATTGATGGTTATACTTAAAGA
2481 AGGGTAATGTAAACAGTGGTGATGAAATATATACACATCAAGTGAAATTACTTGACAGTGTTCATTTGAATGACTTTGAA
2561 TTCAAGCCATTATAATTACTTTTAAAATTAAATATCATTTGCACTGTTCTGATAATGGGTGCAGTTTTTGAGCAATATAA
2641 TCAGAGCTAAATATGCATGTAGTGATTAGTGATGTGAACAATTAACGTTCTGAGAAGAAATACTAACTGTGGTATTTTCA
2721 AACTTAAATTTCTGTAGTAAAATCAGTATCAAAGTCTTATCAGATCAAGGAAAAACAGGCAATGCATATAAACATACTTT
2801 TGAATGTTGTGTGGCCTATAAAGCAATAATGCAATTTATATGGAATGTCATGGGATATGAGAAATGGAAATGCAAAAATA
2881 ACTAATCCTTTAGTAAAAATGTCAACATGTTAAAGGGGGAATGTTAACTAATGTAGGTTATTGCTATTTGTGATTTGTTT
2961 ATGGGTTCTTGGCTTTGACAGCTTCAAAGAATGGACAGTGATAAGTTAAAAGAAATTTTGTATATTGTCAAGGAAAGGGT
3041 CTTAAATCCGAGTCAAGTCCCTTCCTTGGGGTAAAAAATGTATTCTTAAAGCATTCTGATGTTAAAAAGAAAACTTAAGT
3121 TATCTAACCAAAACAGACGCAAGATTTTGTTTCTGCAGACTACTTGGCAATCAAAAGTGATCATAAATTTAGGTTATCAG
3201 TTTTCAGAAAGTTGCTTTGTGAGAAAATTTTGTTAGATATATTCTCCCAAGCATGCTTTTTGTGGAAGGTTTTCAGCCAT
3281 TGCCACTGAATCAGATGTTAAAAATGAAGGGAAAATTGAGTGTGCACACACACAACTGTTGTACACTCATGATTGCAGTT
3361 TTTAGCTTAAGAAACTTTTCTACCAGTTACTGTGAATCTGACTTAAAATGTAAAGTTTCCTCATGATAAAATAGGAACAA
3441 CATAGAAATGGATTGATGGGGTGATCTGAGTTATTGTATATAAAAGTTTTTAAAGAATAGAATGAACATCAAGCTAGATA
3521 GGCAAAAATTGACACATTCAGAACAGCTTTTTTGACTGCGAAGCCAAAAGTTGTCAGAAACAGCAAAAGATCCCTTATTA
3601 TTACAGAGTATTTTACGTAGTCTCTATTTTAAGGAGAGAAATTAAATAGAAGGGCTTCATGCATTTAGGGGAGGGTGCTA
3681 AAACTTCTCAAGTTCGTCAAACTTACAGGAATACCCACCATGATCATTTTCTCTCTAATTATGTATACCACAAAATTTTC
3761 ATCTGGCCATAGGAATTCACTGGTGGGTGTAAAATTAATGACTAAAGAAATTAAGTGACAAATACATAAAAGAAACAGAC
3841 TTGTGGGGATATTGTTTTAAGGTGTATTAATTACTCAGTGATGATACCACTCAATAGGGCATGCCACTACTTTTCTTAAG
3921 ATGCTAATTATGAAGCAGTGCTCACAGGCATTTTTTAACTAGCAAATTAGTAGATGGACTTTTGGGGTCTGTCACTTTTT
4001 AAAAGTATTTAAGACTTAAATTCTATTAGCACCACAGTCTGCCTTCAGTAATACACCTAAAATATTTTTCAGGACCAGAA
4081 GCATTCAGTTTGAAAATTTGCAGATGCAAACCAGTATTATTACTAACGCTCTGGGTCAAAGATTAGGTTTTTAATATTAA
4161 CAGTAGTCTGGTAAATATTTAGAAGTCTGGCATTGAGAAACAAAAGCTTGTACCTGACTAGTATTTTTATTTAAAAAAAT
4241 TAGTTCTGTTAGCTTATTTAAATTGTGTTTTATTTATCCGTAGAATTTATATTTATTTCATTCCTTTCATCTCACTGAAA
4321 ACTGTCTGCAGGCCCTTTGATTTGGATTAGATGTGTGAAGTACTGTCTTTTGCCAAAAACCTCAAATTACCTGTTCTTTT
4401 CAACGTAGTGGGTTTGTGCTTGTTTGGAGATCAGTTCAAAAACTATCTGTACTATCTGTACTGCCTCTGATGTTAAGATT
4481 TTATGTATAGCATAAGGAAGCTAGCTCTGACTATATTTTCCTAAGAATAAAGACCTATTTTTGTAGCATGTCTTAGGATC
4561 TCCAGGAGTCCAAGAATTATTGTGGGTGTCCTCCAATTCATCACTCTTCACTTAACAGCTTTTAAGTAGACACTTGGAAT
4641 CTTTAGAGGTCTGTCGCCCTTTGATTATCCATACATTCGAAGTAACTAGCCAATGGTGAAAAATTCCTCAAGATATCCTC
4721 AGTTGCAATCACATTACTGGAAGATGAATAGAATAAATGTATTAGGCTGGTCTTAATTTTTGATGGAAATATTCTGTTGT
4801 CCCGTACTTGCCATTGGATTTGATAAAGTTAGTGGTAATTTGGAAAGAATCGGGGACTTGCCAATATATTTGTGGGTTTT
4881 AGCTTATACCCCTAGGATTTCTTGGTTGCGGGACGAGCAGTTTTGGCCACTTCCATCAGGACAAGACTTTTTAGGTCACT
4961 TAGTGCAGGTTTTAGTTTCTATTTTGGATTAACAACATTTATATTGATTATCGAAAAGAAGCTTTCATCATTTCAGAACA
5041 GTCCTGGAAGTTTGACTTTGAGTGTGGGAGAAGTCCTAATAAACCATTTTGGAAATTAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cacgaaAUGGUUGAGGUACUAu 5'
                ||||  | ||||||| 
Target 5' caggaaTACC--CACCATGATc 3'
 3706 - 3725 152.00 -10.30
2 
miRNA  3' caCGAAAUGGUU--GA--GGUACUAu 5'
            || | |||||  :|  :|||||| 
Target 5' ctGC-TCACCAAGGTTAATCATGATt 3'
 451 - 475 139.00 -11.80
3 
miRNA  3' caCGAAAUGGUUGAGGUACUAu 5'
            |:| |||  || :|||||| 
Target 5' ctGTTGTAC--AC-TCATGATt 3'
 3336 - 3354 139.00 -9.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26562530 28 COSMIC
COSN26547901 51 COSMIC
COSN30131037 56 COSMIC
COSN31575726 80 COSMIC
COSN30529048 95 COSMIC
COSN23774173 112 COSMIC
COSN30164097 119 COSMIC
COSN31606124 143 COSMIC
COSN6335280 173 COSMIC
COSN7900954 181 COSMIC
COSN14533441 518 COSMIC
COSN20091426 530 COSMIC
COSN19560708 560 COSMIC
COSN29100888 912 COSMIC
COSN7900953 989 COSMIC
COSN28781362 1070 COSMIC
COSN31487093 1082 COSMIC
COSN7900952 1254 COSMIC
COSN30173537 1266 COSMIC
COSN31524493 1386 COSMIC
COSN31538097 1425 COSMIC
COSN19600197 1546 COSMIC
COSN24871260 1961 COSMIC
COSN21392483 2074 COSMIC
COSN19603386 2168 COSMIC
COSN21902515 2232 COSMIC
COSN26794035 2281 COSMIC
COSN26486066 2462 COSMIC
COSN9915116 2528 COSMIC
COSN7900951 3394 COSMIC
COSN505866 3427 COSMIC
COSN145375 3562 COSMIC
COSN2181291 4007 COSMIC
COSN27801837 4480 COSMIC
COSN15668201 4791 COSMIC
COSN29834819 5054 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs572189387 4 dbSNP
rs1443087861 5 dbSNP
rs1280765903 12 dbSNP
rs1203642665 14 dbSNP
rs1311529707 17 dbSNP
rs892667889 29 dbSNP
rs1289422933 37 dbSNP
rs765137537 40 dbSNP
rs891915185 45 dbSNP
rs1053175848 46 dbSNP
rs1354182799 47 dbSNP
rs1256383368 77 dbSNP
rs146922663 79 dbSNP
rs548827448 81 dbSNP
rs1193279479 82 dbSNP
rs925941330 87 dbSNP
rs936790053 95 dbSNP
rs533998494 97 dbSNP
rs1172047685 98 dbSNP
rs750504040 102 dbSNP
rs537605140 120 dbSNP
rs911724862 128 dbSNP
rs1350674705 136 dbSNP
rs555106217 138 dbSNP
rs1291507531 142 dbSNP
rs1219122782 143 dbSNP
rs1344659927 143 dbSNP
rs765469848 154 dbSNP
rs1279980912 160 dbSNP
rs950534353 161 dbSNP
rs1213460272 169 dbSNP
rs917831164 181 dbSNP
rs992125094 186 dbSNP
rs1290050101 188 dbSNP
rs547915210 189 dbSNP
rs1245300195 196 dbSNP
rs541524937 210 dbSNP
rs963383370 211 dbSNP
rs974204367 219 dbSNP
rs1033313601 226 dbSNP
rs1002214187 229 dbSNP
rs906086719 248 dbSNP
rs1014455423 249 dbSNP
rs1407237368 259 dbSNP
rs181701826 260 dbSNP
rs962463781 261 dbSNP
rs28532244 271 dbSNP
rs891967727 273 dbSNP
rs1053200737 278 dbSNP
rs1338326963 279 dbSNP
rs780195688 283 dbSNP
rs1284211304 289 dbSNP
rs904540636 290 dbSNP
rs374969081 291 dbSNP
rs1039005402 294 dbSNP
rs1290547417 297 dbSNP
rs190041508 301 dbSNP
rs150082967 302 dbSNP
rs1006543572 308 dbSNP
rs1259812477 309 dbSNP
rs531713174 309 dbSNP
rs911834755 315 dbSNP
rs561583406 316 dbSNP
rs1030992072 323 dbSNP
rs1473800150 333 dbSNP
rs997782205 335 dbSNP
rs973131083 343 dbSNP
rs1420610590 345 dbSNP
rs1410226599 352 dbSNP
rs1397985788 360 dbSNP
rs1160162851 362 dbSNP
rs762074156 373 dbSNP
rs1358401619 375 dbSNP
rs1160975147 386 dbSNP
rs543304103 396 dbSNP
rs769253774 397 dbSNP
rs572604585 410 dbSNP
rs1385174117 425 dbSNP
rs1033777290 426 dbSNP
rs1445147061 430 dbSNP
rs575701722 431 dbSNP
rs1164839721 434 dbSNP
rs1377181395 435 dbSNP
rs760915836 455 dbSNP
rs1311845131 459 dbSNP
rs980494104 464 dbSNP
rs1204957593 470 dbSNP
rs970783353 471 dbSNP
rs1444690582 472 dbSNP
rs1231566665 473 dbSNP
rs1181332483 474 dbSNP
rs892605461 478 dbSNP
rs555754220 480 dbSNP
rs1014507867 487 dbSNP
rs1180764560 491 dbSNP
rs956193532 493 dbSNP
rs1001017960 507 dbSNP
rs1469413380 513 dbSNP
rs545121492 522 dbSNP
rs866005871 523 dbSNP
rs1412756994 526 dbSNP
rs1335411845 527 dbSNP
rs904632124 534 dbSNP
rs539094287 551 dbSNP
rs759327168 552 dbSNP
rs1292396997 554 dbSNP
rs1334853653 558 dbSNP
rs1248172885 559 dbSNP
rs1238760356 560 dbSNP
rs1351197862 572 dbSNP
rs1275878851 581 dbSNP
rs1347669743 583 dbSNP
rs577642388 594 dbSNP
rs1278790642 595 dbSNP
rs1262529899 596 dbSNP
rs774282644 604 dbSNP
rs555811584 620 dbSNP
rs79750012 623 dbSNP
rs1200652103 631 dbSNP
rs1056744599 652 dbSNP
rs929925843 654 dbSNP
rs890444007 655 dbSNP
rs918384328 657 dbSNP
rs1437525523 660 dbSNP
rs1199303641 663 dbSNP
rs1379160464 664 dbSNP
rs573257712 665 dbSNP
rs1175644843 676 dbSNP
rs929187032 679 dbSNP
rs1466711010 693 dbSNP
rs919109926 694 dbSNP
rs1037469102 697 dbSNP
rs962559859 701 dbSNP
rs1386995995 702 dbSNP
rs535436890 704 dbSNP
rs1333210537 713 dbSNP
rs1403592174 720 dbSNP
rs1283166287 727 dbSNP
rs1319275720 740 dbSNP
rs910971421 745 dbSNP
rs941848116 747 dbSNP
rs1338908950 752 dbSNP
rs1210675477 755 dbSNP
rs1269142886 760 dbSNP
rs1184214700 763 dbSNP
rs926420047 770 dbSNP
rs980929513 773 dbSNP
rs970454583 776 dbSNP
rs985241174 777 dbSNP
rs954990433 784 dbSNP
rs1372010133 790 dbSNP
rs993096009 791 dbSNP
rs1029349358 798 dbSNP
rs570296035 806 dbSNP
rs1403473138 821 dbSNP
rs1031912764 825 dbSNP
rs1341680672 833 dbSNP
rs1470594557 836 dbSNP
rs1402405622 846 dbSNP
rs1293452704 848 dbSNP
rs1325953802 851 dbSNP
rs1245746294 854 dbSNP
rs1267424295 855 dbSNP
rs377602824 859 dbSNP
rs1000392143 861 dbSNP
rs150956081 862 dbSNP
rs1365770676 867 dbSNP
rs1221453434 869 dbSNP
rs1286474789 876 dbSNP
rs956964692 880 dbSNP
rs1197613146 882 dbSNP
rs10223397 886 dbSNP
rs1184727816 889 dbSNP
rs1031696736 891 dbSNP
rs758477347 892 dbSNP
rs1423856400 902 dbSNP
rs1189072238 903 dbSNP
rs1269748381 909 dbSNP
rs1000988552 912 dbSNP
rs868707707 922 dbSNP
rs35163893 929 dbSNP
rs748791225 930 dbSNP
rs1455761985 931 dbSNP
rs570403859 932 dbSNP
rs1023642578 943 dbSNP
rs35016071 961 dbSNP
rs1283248483 963 dbSNP
rs1224134877 966 dbSNP
rs1384926537 966 dbSNP
rs1396664141 967 dbSNP
rs1315017837 968 dbSNP
rs890460465 972 dbSNP
rs1012287037 976 dbSNP
rs199863975 976 dbSNP
rs145307784 979 dbSNP
rs896452785 980 dbSNP
rs558212432 985 dbSNP
rs993388819 985 dbSNP
rs566698293 988 dbSNP
rs1056479035 993 dbSNP
rs1483571729 1000 dbSNP
rs1272712194 1012 dbSNP
rs929994037 1014 dbSNP
rs140291644 1015 dbSNP
rs539153511 1018 dbSNP
rs1038006184 1023 dbSNP
rs772636211 1024 dbSNP
rs1465832456 1029 dbSNP
rs1304449528 1034 dbSNP
rs1381268355 1036 dbSNP
rs1421220518 1042 dbSNP
rs941915822 1043 dbSNP
rs1407250984 1050 dbSNP
rs769546683 1051 dbSNP
rs1044830496 1057 dbSNP
rs1404030828 1059 dbSNP
rs949131133 1071 dbSNP
rs1332256143 1073 dbSNP
rs917601208 1080 dbSNP
rs987833002 1082 dbSNP
rs1235349370 1083 dbSNP
rs1260655137 1086 dbSNP
rs200123336 1087 dbSNP
rs1038731576 1095 dbSNP
rs745795634 1101 dbSNP
rs1198772731 1106 dbSNP
rs747878573 1113 dbSNP
rs956339417 1116 dbSNP
rs1175776509 1118 dbSNP
rs535316952 1119 dbSNP
rs1434211362 1126 dbSNP
rs1179242997 1129 dbSNP
rs1427860120 1138 dbSNP
rs1430017376 1139 dbSNP
rs550267231 1142 dbSNP
rs968921317 1144 dbSNP
rs985186012 1151 dbSNP
rs933742830 1152 dbSNP
rs1368071015 1155 dbSNP
rs1474347517 1157 dbSNP
rs1281267364 1160 dbSNP
rs954765366 1167 dbSNP
rs1030360214 1173 dbSNP
rs1241460526 1174 dbSNP
rs1259433097 1175 dbSNP
rs922373719 1182 dbSNP
rs993485255 1185 dbSNP
rs1216492167 1187 dbSNP
rs1448486855 1195 dbSNP
rs146718039 1200 dbSNP
rs11558766 1201 dbSNP
rs143395675 1205 dbSNP
rs566286846 1209 dbSNP
rs1480433441 1211 dbSNP
rs1194396827 1212 dbSNP
rs1421761462 1213 dbSNP
rs115495559 1214 dbSNP
rs549570438 1215 dbSNP
rs757277850 1217 dbSNP
rs905042229 1218 dbSNP
rs1344721121 1228 dbSNP
rs968149661 1246 dbSNP
rs529422638 1248 dbSNP
rs1271381534 1251 dbSNP
rs1359293351 1257 dbSNP
rs747357295 1261 dbSNP
rs1216265120 1263 dbSNP
rs1213517648 1265 dbSNP
rs1023775050 1266 dbSNP
rs1012255922 1268 dbSNP
rs1225179237 1274 dbSNP
rs1432166252 1274 dbSNP
rs527969909 1275 dbSNP
rs1195067636 1276 dbSNP
rs1243883731 1279 dbSNP
rs1474450291 1280 dbSNP
rs1035535980 1282 dbSNP
rs1469449058 1283 dbSNP
rs1407122470 1291 dbSNP
rs1178605635 1295 dbSNP
rs994179175 1300 dbSNP
rs1414783738 1309 dbSNP
rs1446744973 1317 dbSNP
rs935018146 1324 dbSNP
rs780574579 1326 dbSNP
rs1418945556 1328 dbSNP
rs758872888 1329 dbSNP
rs1320170852 1330 dbSNP
rs1343408706 1333 dbSNP
rs560765018 1334 dbSNP
rs1284343410 1351 dbSNP
rs1384456948 1352 dbSNP
rs545292850 1353 dbSNP
rs141099430 1355 dbSNP
rs750497190 1356 dbSNP
rs1445833678 1358 dbSNP
rs1215154444 1359 dbSNP
rs1240992542 1362 dbSNP
rs1182753614 1369 dbSNP
rs1461441630 1382 dbSNP
rs1049577137 1383 dbSNP
rs910734718 1388 dbSNP
rs1384890347 1389 dbSNP
rs562253138 1392 dbSNP
rs543854322 1395 dbSNP
rs570198768 1397 dbSNP
rs1405694146 1398 dbSNP
rs745530082 1402 dbSNP
rs954857625 1403 dbSNP
rs778325486 1405 dbSNP
rs1273160762 1412 dbSNP
rs989002735 1418 dbSNP
rs770376496 1420 dbSNP
rs1215622368 1423 dbSNP
rs1240194204 1435 dbSNP
rs1368014963 1441 dbSNP
rs201906504 1444 dbSNP
rs1313289238 1445 dbSNP
rs554932280 1455 dbSNP
rs1452388341 1464 dbSNP
rs1384068958 1467 dbSNP
rs1338909198 1468 dbSNP
rs765293765 1474 dbSNP
rs925614320 1477 dbSNP
rs972116721 1486 dbSNP
rs979629705 1489 dbSNP
rs1016641481 1491 dbSNP
rs1353960348 1491 dbSNP
rs968282878 1492 dbSNP
rs1006149470 1494 dbSNP
rs1230971876 1498 dbSNP
rs1469523718 1501 dbSNP
rs540557085 1503 dbSNP
rs1431412764 1508 dbSNP
rs1467758383 1510 dbSNP
rs573032949 1514 dbSNP
rs916857667 1515 dbSNP
rs905136550 1521 dbSNP
rs1171260938 1522 dbSNP
rs1400571596 1522 dbSNP
rs1411524813 1523 dbSNP
rs1383318232 1525 dbSNP
rs1162912832 1533 dbSNP
rs1334385114 1536 dbSNP
rs757463249 1537 dbSNP
rs1445010332 1560 dbSNP
rs558004015 1570 dbSNP
rs961201165 1571 dbSNP
rs1244791842 1572 dbSNP
rs1326347914 1584 dbSNP
rs753990246 1589 dbSNP
rs1013462396 1597 dbSNP
rs1035102865 1597 dbSNP
rs1340247637 1602 dbSNP
rs896311847 1603 dbSNP
rs1480121061 1604 dbSNP
rs994666841 1608 dbSNP
rs1052192049 1612 dbSNP
rs1436987436 1612 dbSNP
rs1232917129 1613 dbSNP
rs1206014496 1616 dbSNP
rs1479454542 1618 dbSNP
rs961361263 1622 dbSNP
rs1016960878 1623 dbSNP
rs1197985116 1623 dbSNP
rs1463160152 1625 dbSNP
rs1165759461 1626 dbSNP
rs1395383469 1634 dbSNP
rs1409731821 1641 dbSNP
rs1304201471 1649 dbSNP
rs1347865041 1650 dbSNP
rs1403649965 1652 dbSNP
rs1344868657 1654 dbSNP
rs764310796 1654 dbSNP
rs749202912 1656 dbSNP
rs1229757027 1667 dbSNP
rs889689577 1683 dbSNP
rs1339046718 1697 dbSNP
rs1222953147 1698 dbSNP
rs935027995 1703 dbSNP
rs1049713271 1704 dbSNP
rs1245977854 1704 dbSNP
rs539272208 1722 dbSNP
rs1221688400 1725 dbSNP
rs551882662 1729 dbSNP
rs3778143 1734 dbSNP
rs1052835643 1736 dbSNP
rs1372141138 1738 dbSNP
rs1444869102 1747 dbSNP
rs1315295013 1751 dbSNP
rs879244852 1755 dbSNP
rs934425246 1756 dbSNP
rs1423247988 1762 dbSNP
rs925591264 1766 dbSNP
rs1303044879 1771 dbSNP
rs1042689833 1775 dbSNP
rs1383984379 1776 dbSNP
rs933527011 1782 dbSNP
rs114797392 1784 dbSNP
rs1247011040 1787 dbSNP
rs1316835321 1788 dbSNP
rs774046248 1790 dbSNP
rs972126555 1798 dbSNP
rs879895692 1816 dbSNP
rs567706067 1818 dbSNP
rs1486843235 1819 dbSNP
rs1202784654 1822 dbSNP
rs1260448946 1826 dbSNP
rs916826557 1834 dbSNP
rs1298758239 1840 dbSNP
rs1185082621 1846 dbSNP
rs549083923 1855 dbSNP
rs1363859691 1864 dbSNP
rs962072585 1880 dbSNP
rs991512932 1882 dbSNP
rs960871438 1897 dbSNP
rs909284228 1899 dbSNP
rs1425279741 1903 dbSNP
rs1386810728 1907 dbSNP
rs550227915 1943 dbSNP
rs1380924841 1950 dbSNP
rs1156710318 1956 dbSNP
rs1307446119 1964 dbSNP
rs928124583 1968 dbSNP
rs1318592604 1971 dbSNP
rs1418082886 1978 dbSNP
rs1236817486 1979 dbSNP
rs969410322 1993 dbSNP
rs762845997 1994 dbSNP
rs961747970 1996 dbSNP
rs1460648635 1997 dbSNP
rs1017054729 1998 dbSNP
rs1222334878 1999 dbSNP
rs527655020 2011 dbSNP
rs1030815401 2012 dbSNP
rs999290440 2013 dbSNP
rs1490664802 2017 dbSNP
rs1157599871 2019 dbSNP
rs772763845 2019 dbSNP
rs763978390 2020 dbSNP
rs1470335226 2030 dbSNP
rs866542684 2031 dbSNP
rs769365093 2034 dbSNP
rs1267534006 2038 dbSNP
rs1404092245 2039 dbSNP
rs903630326 2040 dbSNP
rs1043464740 2041 dbSNP
rs954062977 2042 dbSNP
rs1298484836 2045 dbSNP
rs1316755227 2052 dbSNP
rs1375295952 2053 dbSNP
rs1389499887 2054 dbSNP
rs1007007846 2058 dbSNP
rs1028211918 2059 dbSNP
rs1346139063 2062 dbSNP
rs1224813935 2063 dbSNP
rs1260713312 2067 dbSNP
rs1307967273 2071 dbSNP
rs889453427 2074 dbSNP
rs1252213861 2075 dbSNP
rs756030897 2090 dbSNP
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rs1175905223 2095 dbSNP
rs567065300 2098 dbSNP
rs1481050238 2102 dbSNP
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rs1053374195 2109 dbSNP
rs371720981 2120 dbSNP
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rs1309268634 4927 dbSNP
rs958638735 4931 dbSNP
rs777879069 4933 dbSNP
rs1379863804 4945 dbSNP
rs1167333676 4948 dbSNP
rs1449212333 4952 dbSNP
rs1391221985 4954 dbSNP
rs1488959889 4981 dbSNP
rs543328065 4989 dbSNP
rs1215304706 4997 dbSNP
rs1059162 4999 dbSNP
rs1250865095 4999 dbSNP
rs1034403030 5001 dbSNP
rs1190703381 5010 dbSNP
rs188299074 5011 dbSNP
rs1020460852 5012 dbSNP
rs1009949422 5013 dbSNP
rs1255484153 5014 dbSNP
rs1201124335 5022 dbSNP
rs1484312432 5029 dbSNP
rs1462726560 5039 dbSNP
rs1323513009 5043 dbSNP
rs892813315 5044 dbSNP
rs971397319 5046 dbSNP
rs1249542115 5048 dbSNP
rs1392670996 5048 dbSNP
rs1032651028 5051 dbSNP
rs1364774561 5054 dbSNP
rs1212861077 5056 dbSNP
rs529984775 5059 dbSNP
rs1295000827 5065 dbSNP
rs1335588418 5067 dbSNP
rs1342545599 5070 dbSNP
rs1271524007 5072 dbSNP
rs1467814155 5075 dbSNP
rs1299580246 5083 dbSNP
rs182403039 5084 dbSNP
rs1484880634 5086 dbSNP
rs189788150 5092 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545212. RNA binding protein: AGO1. Condition:Control PAR-CLIP data was present in GSM545214. RNA binding protein: AGO3. Condition:Control PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection PAR-CLIP data was present in GSM545217. RNA binding protein: AGO2. Condition:miR-7 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 10492.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 3 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 10492.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065670. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
Experimental Support 4 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM545212
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / Control
Location of target site ENST00000355238.6 | 3UTR | CUUUCCAUUUCUUAUGCAGGUCAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM545214
Method / RBP PAR-CLIP / AGO3
Cell line / Condition HEK293 / Control
Location of target site ENST00000355238.6 | 3UTR | CUUUCCAUUUCUUAUGCAGGUCAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000355238.6 | 3UTR | CUUUCCAUUUCUUAUGCAGGUCAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM545217
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-7 transfection
Location of target site ENST00000355238.6 | 3UTR | CUUUCCAUUUCUUAUGCAGGUCAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000355238.6 | 3UTR | CAGCUUUCCAUUUCUUAUGCAGGUCAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM1065670
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / 4-thiouridine, 3_ML_LG
Location of target site ENST00000355238.6 | 3UTR | CUUUCCAUUUCUUAUGCAGGUCAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000355238.6 | 3UTR | CUUUCCAUUUCUUAUGCAGGUCAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
43 hsa-miR-2681-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT095679 RBM27 RNA binding motif protein 27 2 4
MIRT217751 TBPL1 TATA-box binding protein like 1 2 2
MIRT344142 CDT1 chromatin licensing and DNA replication factor 1 2 2
MIRT353812 PCBP1 poly(rC) binding protein 1 2 2
MIRT457093 IGF2R insulin like growth factor 2 receptor 2 2
MIRT463686 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT466768 SYNCRIP synaptotagmin binding cytoplasmic RNA interacting protein 2 8
MIRT481861 AP1G1 adaptor related protein complex 1 gamma 1 subunit 2 8
MIRT496692 KREMEN1 kringle containing transmembrane protein 1 2 2
MIRT515384 RPL7 ribosomal protein L7 2 2
MIRT519785 ZNF354B zinc finger protein 354B 2 10
MIRT530117 SLC25A42 solute carrier family 25 member 42 2 2
MIRT530428 SULT1B1 sulfotransferase family 1B member 1 2 2
MIRT545655 SPARC secreted protein acidic and cysteine rich 2 2
MIRT545698 NUTF2 nuclear transport factor 2 2 2
MIRT550287 APOL6 apolipoprotein L6 2 2
MIRT556356 MAFK MAF bZIP transcription factor K 2 2
MIRT563763 ZNF678 zinc finger protein 678 2 2
MIRT566660 NAMPT nicotinamide phosphoribosyltransferase 2 2
MIRT571896 MRPL17 mitochondrial ribosomal protein L17 2 2
MIRT575540 Map4 microtubule-associated protein 4 2 2
MIRT610626 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT635327 BMS1 BMS1, ribosome biogenesis factor 2 2
MIRT637795 OLA1 Obg like ATPase 1 2 4
MIRT638243 SLC1A5 solute carrier family 1 member 5 2 2
MIRT642976 TESPA1 thymocyte expressed, positive selection associated 1 2 2
MIRT646609 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT658895 DRAXIN dorsal inhibitory axon guidance protein 2 2
MIRT686070 KCNA7 potassium voltage-gated channel subfamily A member 7 2 2
MIRT693410 NUDT16 nudix hydrolase 16 2 2
MIRT699020 SOAT1 sterol O-acyltransferase 1 2 2
MIRT702180 LYRM4 LYR motif containing 4 2 2
MIRT704727 CEP135 centrosomal protein 135 2 2
MIRT709001 ZNF28 zinc finger protein 28 2 2
MIRT709445 TGFBRAP1 transforming growth factor beta receptor associated protein 1 2 2
MIRT709456 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT711983 DCTN6 dynactin subunit 6 2 2
MIRT713090 ZG16 zymogen granule protein 16 2 2
MIRT714871 LLPH LLP homolog, long-term synaptic facilitation 2 2
MIRT717025 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT721910 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 2 2
MIRT722085 SMC2 structural maintenance of chromosomes 2 2 2
MIRT725027 CX3CL1 C-X3-C motif chemokine ligand 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-2681-3p Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-2681-3p Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-2681-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (100 ng/ml)
hsa-miR-2681-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

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