miRTarBase - #MIRT466948


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pre-miRNA Information
pre-miRNA hsa-mir-4781   
Genomic Coordinates chr1: 54054079 - 54054154
Description Homo sapiens miR-4781 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4781-3p
Sequence 46| AAUGUUGGAAUCCUCGCUAGAG |67
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs968609764 2 dbSNP
rs899910686 3 dbSNP
rs74085143 4 dbSNP
rs550946107 8 dbSNP
rs747064911 10 dbSNP
rs1352517651 13 dbSNP
rs1436072914 22 dbSNP
Putative Targets

Gene Information
Gene Symbol STAU1   
Synonyms PPP1R150, STAU
Description staufen double-stranded RNA binding protein 1
Transcript NM_001037328   
Other Transcripts NM_004602 , NM_017452 , NM_017453 , NM_017454   
Expression
Putative miRNA Targets on STAU1
3'UTR of STAU1
(miRNA target sites are highlighted)		 
>STAU1|NM_001037328|3'UTR
   1 ACCTTTTCTGGCCATGAACCATTATAAAATCCCAACATATATACTGAAAATACTGAAACTGCTTTGAAAATTTGGAATTT
  81 CTGATACCTCCAGTGGGCCGAGAGACACGGTGGGTAAAGGATGTGGGCAGCAGCAGGGAAGACAACAGAAACACAAGGAG
 161 GCGGCTGTGGCCGGGCTGGACTGTGCTGGGGTTTGTTGTGATGGCCACTCGGTGACCTGGCGGTCCCTACGCAATAGCAG
 241 CTGCCTGTGGGGAAGAAGGGCTGCCCAGCCAGCTGGTTCTCCCGGGACACCAGCAGATCCACACCCTGGGCACCTCCGTG
 321 TTTGGTCTTTTTTTTCCCCTGTGTGAAAGAAGAAACGGCACGACCCCTTCTCAAGCTGGCTCACTCAGACACATTGGGAC
 401 AAACCCTGGACAGCCATGCCAGAGAGAGGCCTTTGACCGGCCCCAGAGCTAAAAGCACCAGAGAAAATCAAATGCTTCCT
 481 ACTCAGCGTGACCCAACTTTTCTAGTGTGCCACGGCCCCACCACCTCCTGCAGTACCCACACCATCACCACTGCTTTCTC
 561 TTCCAACAGTGATCTGTATTCTTAGTTTCATTATTTTCTTTTGATTGATATGACACTATATAAAATTTTCATTTGAGAAT
 641 TTCTCAATTGTATCTAGTTAAATAGCACAGTTTGGAAACTTGTCTGAGACTGACTTTATCAATAATCTAACCGACAAAGA
 721 TCATATCCATGTGTATGTGGTTAGACATTTTTATTTCATTGACTAACCCAGGACAGTTTCAGTGATGCAAATTGTGTGCC
 801 CTCTGGTTCAGCTGAAACAGTCCTGGACTTTCAAAAACCTTGAATAAGTCTCCCACAGTTGTATAAATTGGACAATTTAG
 881 GAATTTTAAACTTTAGATGATCATTTGGTTCCATTTTTATTTCATTTTTATTTTTGTTAATGCAAACAGGACTTAAATGA
 961 ACTTTGATCTCTGTTTTAAAGATTATTAAAAAACATTGTGTATCTATACATATGGCTCTTGAGGACTTAGCTTTCACTAC
1041 ACTACAGGATATGATCTCCATGTAGTCCATATAAACCTGCAGAGTGATTTTCCAGAGTGCTCGATACTGTTAATTACATC
1121 TCCATTAGGGCTGAAAAGAATGACCTACGTTTCTGTATACAGCTGTGTTGCTTTTGATGTTGTGTTACTGTACACAGAAG
1201 TGTGTGCACTGAGGCTCTGCGTGTGGTCCGTATGGAAAGCCTGGTAGCCCTGCGAGTTAAGTACTGCTTCCATTCATTGT
1281 TTACGCTGGAATTTTTCTCCCCATGGAATGTAAGTAAAACTTAAGTGTTTGTCATCAATAAATGGTAATACTAAATTTTT
1361 TTGTTAATTTATTCTCAAATGCCACTACTGCTAGGTTGGTCCCCTCCCAACTTGCCCCTATCCTTTTTTTATTTTTAAGA
1441 AAAAAACTTTGTAATGCTTGTGATTCCATCTGGGCAAAAGTCTGAAGATCTGAAATAACTTTATATCAAACCATTGATCA
1521 ATAAACAGCTACTAATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' gagaucgcuccUAAGGUUGUAa 5'
                     || ||||||| 
Target 5' accattataaaATCCCAACATa 3'
 18 - 39 147.00 -7.90
2 
miRNA  3' gagaucgcuccuAAGGUUGUaa 5'
                      ||||||||  
Target 5' cactgctttctcTTCCAACAgt 3'
 549 - 570 130.00 -9.14
3 
miRNA  3' gaGAUCGCUCCUAAGGUUGUaa 5'
            ||  || |||  |||:||  
Target 5' ttCTCCCG-GGACACCAGCAga 3'
 277 - 297 119.00 -14.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30157769 8 COSMIC
COSN30506995 17 COSMIC
COSN30466527 33 COSMIC
COSN26646742 42 COSMIC
COSN26645105 53 COSMIC
COSN31508950 53 COSMIC
COSN26647832 55 COSMIC
COSN30177505 78 COSMIC
COSN30164748 93 COSMIC
COSN31604022 97 COSMIC
COSN31586818 100 COSMIC
COSN24296149 139 COSMIC
COSN30112863 162 COSMIC
COSN28853085 163 COSMIC
COSN20079743 178 COSMIC
COSN28771534 187 COSMIC
COSN7095271 283 COSMIC
COSN31539579 327 COSMIC
COSN26679134 522 COSMIC
COSN5972968 625 COSMIC
COSN30165367 650 COSMIC
COSN7052416 710 COSMIC
COSN30175354 787 COSMIC
COSN8611076 998 COSMIC
COSN31485116 1051 COSMIC