miRTarBase - #MIRT467235


—
pre-miRNA Information
pre-miRNA hsa-mir-451b   
Genomic Coordinates chr17: 28861371 - 28861438
Description Homo sapiens miR-451b stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-451b
Sequence 7| UAGCAAGAGAACCAUUACCAUU |28
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 2 17 + 28861378 16594986, 27587585 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs761024330 13 dbSNP
rs1173019348 17 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SPRED1   
Synonyms NFLS, PPP1R147, hSpred1, spred-1
Description sprouty related EVH1 domain containing 1
Transcript NM_152594   
Expression
Putative miRNA Targets on SPRED1
3'UTR of SPRED1
(miRNA target sites are highlighted)		 
>SPRED1|NM_152594|3'UTR
   1 AATGGTCCAGTGCCAAAATGAGCTTAAAATCTTTGTTTCCAGGAATTAGCTAACTTGGATTTGTGGAAGCTTTTGGCAAG
  81 CAATATGGAATCTTGCCTGGTATCATTGAGCCCACACATGGAGGAAGCAGAACTCATCAGTTCTTGGCGTTTCACGCCAT
 161 GCCTAACTTTTCCCTTGAGTGCATGGCATGTTTTGTTACAGGTTGTAGAGTATTTGCAGAAGGAAACCATTTCTGGTTAT
 241 TTGGCTATAAAAAGTCAGCATAAAATATGATCCAACTAAAAGGGATTAATTTTTGGCATTTTTGTATATTTATGCATTAG
 321 GTGATGGGACTTTTAAAGGTTTGAATTTATTAGGACACGAACTAAAAATAAAAGTGCACTAGGGGACAGTTGATTTCAAT
 401 CTAAGAAAAGTTAACACTTGGGAATTACAAGAAGTAAAACAAGTGCAACTAAATCATTTATTAGTTGTTTTTTGAAAGCA
 481 GTTTTATGTATAAATAACAAATGTTTATATTTAACTAAATGTAAGGTACGAATTATTACATATTAAACTTTTCTTCCCCT
 561 TCCTAGTTCTGAAGTAGATATATATATATATATATCTACTGTCACATTCCATATATTTTGAATATTTAACTCATCTAGTT
 641 AATAATGTTTTTATTCCATGCGAATGATTTGATATTTTCATCCTTATTTCTCTTTGGCTACAATTTATATTGAGTTATAT
 721 CTGTACATTCTGGTAATCTAAAATCCTTAAAAATACTCTAATAGCCTTGAGTGACCAACTTTTTTTTTAAAGCACAGATG
 801 TAATTGTCTAATGTTCTGATGGGAACGTAACACTTATTTTTATATAAAAAGAGACTGAGTAAACAAACATTATAGAAAAA
 881 AAGTGAAGTTTTTTAGTTGTTTTTTGTGGTATTCAACCAGCAAGTTGTTTTCTTTCAGAGTTTCCTCCTTCAAAAAGTTA
 961 TATTGCATTTACAAATGTTTTACAAGGCAGAAAGTTTGACTGGATAGTTAGTGTAAAAGCTTCATGTTGAGATCTTCACG
1041 TATCATTCTGCTAAACCAGAATATGTTCAGCTGTGTTACTAATTTTTCAGCTTAATCCTCAGTGCTTATTATTTACATAA
1121 CAATAACTTTTTATCAGTTACATTTTATTTTTATTTAAACTGGCCAAAAGCAAAATTATTTTATGTTAAAATGTGTGCTA
1201 AACTATCCCAGGAAAGTATTTAATCCAACATTGTAAATGAAGTATCTTGTACATATAAATTTATTTCTTTTGCAGAGCAT
1281 TATATTACTGGATGTTTAATTTACAAAATAGTTGGGTAAATGTTCCAACAAACTTTAAAGTACCTTGAAGTCAAATTGTC
1361 TGTTTTTGTTTTGTTGTTGTTGTTGTTGTTTTCTTAAGTGTTACATTAAAACTCTAACCAAGGAAAGGGTTCTTTAAGAA
1441 CATTCCCTTAGAGGGATAAAGTTGAGAAGTGTGCCTTTTTTTTAATGGCTTGAAGTTTCAGAGGTGATAAAAATTAAAAT
1521 CACACTACTATTTGAAGCTCATTTTCTATGCAGGTTTTTAAACGTCATTTATGTATCATTCTTTTTATATATCACACTTA
1601 AGCTTGTGTTAGCTTTTTTCTTTTGCCCCAGATCAAACTGAACAATGTATATAACACTATCTGTCTGTAAAATACTTTTT
1681 TTAAGAAAGCATTTATATTTATATGACAGCTTGAACTGACAACATTGTGTATATAGATCATCTTGAAGTATTATTTCACA
1761 TTGAAAAGAAGAAAATATATTGATAACTATAGATGTTATGAAGAAGAGGGTATTTCTAGTTTTGTACTAAAAATCAATTG
1841 GATGAACTAAATCCAAAACATGACACTGTAGGCAGCAGTTTTAAGTCTTATTTTTACTGTTTATATATTTGAATGCTGCT
1921 ACAACAGATGATCTTCATCCCTGAAGTTTTCAGCTAAACTTGGTTTCCTAGAATAGACTGTTAACTTTCAAAATTTTTAT
2001 TGGTGAAATGGAAATACTGTTTTTCCTTGTGAATGAATTTTCATATTTGTAAGTGCTAAGTTTATAATTCAGGTTTGATC
2081 AAGGTGTGAATAACTGAAGAAAATAACTTGCTGGCTATATAGGAAAATGCTGTGGAAATGAACTGTGTATATACTTCTGG
2161 GAGGAACAAATTTAATCATTTCTTCTGTTAAGCACTAATCAGTATAGTGCAACTCCTGGTTCTGTACTGTATTTTATATG
2241 CAACATATATGCTTTAATATTTTAATGTTTGTGCATTAATATTTTCAATTTGTTTAACCACTTTGCTGCTAAGATTTTGC
2321 CGTCCCATTCCCATTTTTTCCTTTACAATTTTAAACAAGTTTCTTCATTAAAAACTATGGTGATGAAATGGTTTTTATTT
2401 TACCTTGGATCTTTATAGTTAACATACCCAGTTTCTTAATCAGTCTACAAGACTAACTGATGATATAATGTTCTCTGAAT
2481 CCCTATATGGAAATTTTCTTTTGAGTAAATGAGAATTCCTTTGTGAAAGCAAATGGGTAGTTTAAATCACTGATTCTTAA
2561 ACATGTGTATAGGCACCTTCAGGAACATTTTCTCATTCTCTGTACAGATTCGGCACTGCCAATTGGCTTTTCCTCTAAAA
2641 CTTTTCTTTGTTTTTATCTGATATAAGCAGATGGCTCAAGACAACTGCTTGAGTAATAGTATTGAAAATGGAATCATCTA
2721 GACGGCATGACAAGCAAGACTGGTCTGATGAACTTGTTCAGAATTGATAATTCTTAAATATTTCTCTTGGCTTCAAAAGG
2801 GACATCATTTGATTTCTGAAGAAGTATGTCGTGTGGAGCTTCAGCACCACCTACTGGATGATTTCCAGGCCAGAGACATG
2881 AGATGGCAATAGGGATCTGACAGGGTTCATCACTACTACCATTAAAGGGCTATTTATGTGGTGACCACCTCTACCAGGGA
2961 AACCAGGAATAAGAACTGTCTCAAAGGAATTGTAAAATGGTTATTTACCTAATGTGTCTTGTTGGCTTGCTGAAAGATTT
3041 TAAGCACTTTTTTCTTACATATCCTGTTTTAAAATATTTGTTGATATTTGGGACTGGCAATCAAACTTAATGGATGTACT
3121 GAGGCATTTATAGAACCAGTTGCTTTAACTCTCAAAAGCCATTACCAAAATGGTATTTTTTTCCTCCTTCCGCCAGTCAG
3201 GGAGAATTTTTAAAAATAATAATCAAAACATGAAAAAACATAATCACACCTGTATTTTATCATGACAGCTTCAGAGAGTG
3281 TGTGTGTACGTTTTTCTCTCTTTTATTTGAGACGGAGTTTCACTCTTGTTGCCCAGGCTGGAGTGCAATGGTGCGATCTC
3361 AGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCACCC
3441 ACCACCATGCCCAGCTAAGTTTTGGTATTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTG
3521 ACCTTAGGTGATCCACCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCTACTGCGCCCAGCCGTGTGTATG
3601 TTTCTGAAATGATGATGGGGTGGGGTTAAAATCTAAAGGGAAAAACTTGAAACTACCTATTTTCATTGGTTATTCAGCAG
3681 TGCCTAAAATGAGCTTTTGAAGTAATGTAAATGCACTTTCAATTCATGTGTATAGTGCCATCTGATATCTTGGGTAAGTC
3761 TTGCTTTTTCTTTTCTTTTTCCTCTCCCCTGCCCCCTTAATTAAATGGCACGGAAATGTTTCTTAATATGCACGTGAGTC
3841 TCCAGAGTACAGGAAATGTGCTTTCCTCTAAATGGTCAATGTAAAGAATCTTAAGGATATTTCTTGTGTTGAAATTTACA
3921 TTCGATTTTGTGATTACACTTGGAAGTATGTGTTAAATTGGGTTTTTAATTGTAGCCCAAAGGTGCATTAAGCAAGTGTA
4001 ACATTTTTTCCACATAAAACTTAGAAAACTTTAGTTACCTGAAAAGCAAGGATTCTTTACTAATTATTATGCTCATTCTT
4081 GATTTGACTTCCATGTTCACACTTCAAAGTGTAAGAGGAAGCACTAGAAACTGGCATTATTGTTGCACTAAAAAAGTCTA
4161 TAAATCATAATAGCACCATGAGGTGTTTTGCAATGAGACAAACATGAAGAATGAATTTCTTTAAGAGAGAAACACAACCG
4241 GAGGTGATTTATATAAACCAAAAGAAAAAAAAAGGCTTTAAGGTATTAGGTACTGTTTGCCTAGCAGCCAGGTGGTTATA
4321 AAAGATTCATATGCTTTGGTACACTGATAAATGTTAGCCATTATTCCTGAAAGCTTCTTAAATTGCATCAGTTGTTTTGA
4401 AATTTTTTCAAGAATAAACTAGTTGAAAAGTCTTTGTATTAAAAATACACATAGATTTTTGTGAACATTTCCAGTGTGTA
4481 GTGTCGTTTGCTTTCTATTTCTGACCTCAAAAGTGCCTCACTTGTATATTATTTCCATTAAAAGCTTGACTGCATTCTTT
4561 CTAATGAACAATGAAAAACTGTTTAACTCATGTCATAATGTGTCTCCTCAGATATAGTTAACTAGCTTGATAGTTTTGAG
4641 TATATAATGTAAATAATACATTATAAGTTTGTAACCATTTCTGTTACTTCATACCCGTGTAATTGGACATAGCAGATGAT
4721 TATCATAAGAATTTGTTTTAATGGTTTTTTTCCCTCCTGGAATTACCTGATTAAACCTGTCATGAATTATAAAAGGACTT
4801 TTTCTTATTCTCCTAGAGCTTATCAAATTATCACATAAGAGATAATTACTGGAGGAGAAAGTAAAAATGGAAGCTTTTGA
4881 TAATTAGCTCTGTTCTTTAAAAGTATACTTTTAAACTGAAAGTTCACATATAGTTCATCTTAATAACATATTTATTCATC
4961 CTTAATTGTATTCAGATTTTTTTTTAAGTCTCTAAGCTAATAATGTTATATTTATTGGTTTGGTAACATGTTGCAGCTAA
5041 GCTAATGACCTTAAGTGGCAATTGTTTAACCCAGGACTACTGATTTTTTTATATTCAAGTCAGTTTCATCGTTTTACTTA
5121 ACTCGCCATATAACCAAAAATAACGAATAATCTAAAGGAAAGGTTATTAGGACAGTAATAAAAAATTATAGTGTATCTCA
5201 ACACTAGAATAAGTTGGATTACTATATTATAGTTTATTTGAAAAATCAAGGAGTAACTGTATCTTTACCATTAATTATGA
5281 AATGTAGTCTCATGTGCTTATTTACAGGTTTTTCAGAATTTGCTTTACATTCTTCACATCAAGTTAATACCCACAAGTAA
5361 GTAGAATAGCTTTTATAACAAGGAAATTGAAACTAGGGTTCTAGCTTGGCTATCAATATAAGTGTCATGCACATAGTGCT
5441 CCTTAAAGAAAAAGACATCGACATCAATGGTATGAAAGCTGTAGTCACTCTTTAAATTGAACTGCTCTAAGATTTGCAGT
5521 TTTAGTGAGATCTGAAATGATGGTTCAAAAAATACATTCATAATAAAAGTCTTAACAAAATCACA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' uuACCAU--UACCAA--GAGAACGAu 5'
            || ||   ||| |   ||||||| 
Target 5' tcTGATATCTTGGGTAAGTCTTGCTt 3'
 3741 - 3766 148.00 -11.30
2 
miRNA  3' uuaccAUUACCAAGAGAACGAu 5'
               |||||  | |||||:| 
Target 5' ttaccTAATG--TGTCTTGTTg 3'
 3005 - 3024 141.00 -8.60
3 
miRNA  3' uuACCAUUACC---AA--GAGAACGAu 5'
            | | :| ||   ||  ||||||:| 
Target 5' atTTGAGACGGAGTTTCACTCTTGTTg 3'
 3305 - 3331 134.00 -11.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
886134 106 ClinVar
315739 150 ClinVar
315740 249 ClinVar
315741 257 ClinVar
887144 384 ClinVar
315742 428 ClinVar
315743 566 ClinVar
315744 578 ClinVar
315745 578 ClinVar
315746 578 ClinVar
315747 578 ClinVar
887145 582 ClinVar
887146 633 ClinVar
887147 634 ClinVar
315748 811 ClinVar
888404 937 ClinVar
315749 1041 ClinVar
888405 1096 ClinVar
315750 1338 ClinVar
315751 1401 ClinVar
315752 1564 ClinVar
315753 1657 ClinVar
315754 1725 ClinVar
888406 1728 ClinVar
315755 1748 ClinVar
315756 1799 ClinVar
885295 1834 ClinVar
315757 1898 ClinVar
885296 1968 ClinVar
885297 2019 ClinVar
885298 2118 ClinVar
885299 2248 ClinVar
885300 2252 ClinVar
886200 2324 ClinVar
315758 2360 ClinVar
886201 2399 ClinVar
315759 2412 ClinVar
886202 2421 ClinVar
886203 2423 ClinVar
886204 2445 ClinVar
315760 2502 ClinVar
886205 2540 ClinVar
315761 2571 ClinVar
887204 2612 ClinVar
887205 2743 ClinVar
315762 2832 ClinVar
315763 2844 ClinVar
887206 2854 ClinVar
315764 2886 ClinVar
887207 2991 ClinVar
315765 3058 ClinVar
315766 3193 ClinVar
888459 3290 ClinVar
888460 3324 ClinVar
888461 3341 ClinVar
888462 3396 ClinVar
315767 3522 ClinVar
888463 3537 ClinVar
888464 3544 ClinVar
315768 3545 ClinVar
884236 3562 ClinVar
315769 3585 ClinVar
315770 3592 ClinVar
315771 3624 ClinVar
315772 3648 ClinVar
884237 3658 ClinVar
884238 3660 ClinVar
315773 3699 ClinVar
886266 3702 ClinVar
886267 3706 ClinVar
886268 3746 ClinVar
315774 3831 ClinVar
315775 3947 ClinVar
315776 3997 ClinVar
315777 4047 ClinVar
315778 4136 ClinVar
887264 4305 ClinVar
887265 4373 ClinVar
887266 4472 ClinVar
315779 4473 ClinVar
315780 4663 ClinVar
887267 4698 ClinVar
315781 4726 ClinVar
315782 4745 ClinVar
315783 4782 ClinVar
315784 4823 ClinVar
315785 4933 ClinVar
315786 4948 ClinVar
315787 4988 ClinVar
315788 5084 ClinVar
315789 5111 ClinVar
315790 5203 ClinVar
315791 5233 ClinVar
888520 5264 ClinVar
315792 5347 ClinVar
884303 5399 ClinVar
884304 5419 ClinVar
884305 5441 ClinVar
884306 5450 ClinVar
884307 5541 ClinVar
COSN217001 32 COSMIC
COSN27139854 49 COSMIC
COSN26679036 50 COSMIC
COSN30175335 200 COSMIC
COSN31535740 289 COSMIC
COSN31536599 360 COSMIC
COSN31515743 461 COSMIC
COSN26465462 491 COSMIC
COSN24305312 530 COSMIC
COSN24872835 595 COSMIC
COSN27374601 596 COSMIC
COSN29299507 624 COSMIC
COSN8743435 713 COSMIC
COSN29598982 789 COSMIC
COSN26507922 790 COSMIC
COSN26601526 858 COSMIC
COSN31490218 858 COSMIC
COSN31520031 876 COSMIC
COSN31584001 883 COSMIC
COSN31595420 1371 COSMIC
COSN31576913 1484 COSMIC
COSN14457008 1506 COSMIC
COSN31556496 1527 COSMIC
COSN31606805 1605 COSMIC
COSN25135459 1626 COSMIC
COSN20111924 1660 COSMIC
COSN30169844 1662 COSMIC
COSN24305313 1717 COSMIC
COSN31521964 1869 COSMIC
COSN30171151 1934 COSMIC
COSN30173543 1980 COSMIC
COSN27014749 2043 COSMIC
COSN31570472 2112 COSMIC
COSN8743436 2176 COSMIC
COSN31584319 2186 COSMIC
COSN31516627 2362 COSMIC
COSN7044448 2404 COSMIC
COSN5396878 2415 COSMIC
COSN25257223 2468 COSMIC
COSN31544180 2484 COSMIC
COSN6272196 2557 COSMIC
COSN7044449 2593 COSMIC
COSN9090387 2745 COSMIC
COSN21376590 3033 COSMIC
COSN6272197 3460 COSMIC
COSN27711114 3812 COSMIC
COSN19457669 3815 COSMIC
COSN5396879 3950 COSMIC
COSN27460122 4077 COSMIC
COSN9624469 4135 COSMIC
COSN18834200 4176 COSMIC
COSN18834201 4177 COSMIC
COSN29755844 4274 COSMIC
COSN14542288 4340 COSMIC
COSN16040666 4933 COSMIC
COSN22614218 5107 COSMIC
COSN1176292 5108 COSMIC
COSN16439736 5363 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs769445247 3 dbSNP
rs1290157571 6 dbSNP
rs1267207801 10 dbSNP
rs1379934822 12 dbSNP
rs891077662 22 dbSNP
rs1451167547 30 dbSNP
rs973368328 31 dbSNP
rs1314974043 32 dbSNP
rs772254530 34 dbSNP
rs1230410923 35 dbSNP
rs1282570677 37 dbSNP
rs1387170993 46 dbSNP
rs772560499 48 dbSNP
rs373694127 49 dbSNP
rs1343759278 64 dbSNP
rs544137820 65 dbSNP
rs533114849 67 dbSNP
rs1171662592 71 dbSNP
rs1025945380 76 dbSNP
rs773453342 82 dbSNP
rs1198646277 84 dbSNP
rs1009278466 87 dbSNP
rs1020286096 95 dbSNP
rs1464262550 96 dbSNP
rs954339455 101 dbSNP
rs1442935138 102 dbSNP
rs1461850065 104 dbSNP
rs545295358 106 dbSNP
rs910296382 121 dbSNP
rs1341820535 123 dbSNP
rs1270979927 129 dbSNP
rs943227853 132 dbSNP
rs1228147902 134 dbSNP
rs1363388444 139 dbSNP
rs770816015 144 dbSNP
rs1339306544 148 dbSNP
rs1033084809 149 dbSNP
rs776485386 150 dbSNP
rs1449069861 156 dbSNP
rs1412257141 157 dbSNP
rs1398254019 164 dbSNP
rs934606444 166 dbSNP
rs192826011 169 dbSNP
rs765093939 174 dbSNP
rs1388044666 183 dbSNP
rs530541798 184 dbSNP
rs1185367581 187 dbSNP
rs1052988828 190 dbSNP
rs377091058 191 dbSNP
rs1208184592 196 dbSNP
rs567404158 206 dbSNP
rs982818134 212 dbSNP
rs1044533508 223 dbSNP
rs377201217 227 dbSNP
rs1204655035 230 dbSNP
rs1172082744 243 dbSNP
rs908220961 248 dbSNP
rs16966842 249 dbSNP
rs1006156390 250 dbSNP
rs547722924 251 dbSNP
rs1445191499 253 dbSNP
rs145373657 257 dbSNP
rs1308289840 259 dbSNP
rs539607759 266 dbSNP
rs994432500 282 dbSNP
rs1368288607 286 dbSNP
rs1029867136 294 dbSNP
rs1405729981 299 dbSNP
rs1413001423 308 dbSNP
rs1179980922 309 dbSNP
rs1471219280 316 dbSNP
rs1252569499 317 dbSNP
rs1181526429 321 dbSNP
rs137920898 322 dbSNP
rs1294213659 324 dbSNP
rs1297950866 335 dbSNP
rs1223762726 339 dbSNP
rs1321438596 340 dbSNP
rs1366932145 345 dbSNP
rs954413934 347 dbSNP
rs932465161 355 dbSNP
rs569990101 359 dbSNP
rs537079236 360 dbSNP
rs751117768 361 dbSNP
rs1411691018 372 dbSNP
rs1436940100 379 dbSNP
rs1464330719 380 dbSNP
rs1349053245 381 dbSNP
rs13329392 383 dbSNP
rs1162626226 391 dbSNP
rs555317480 392 dbSNP
rs1402428303 396 dbSNP
rs1412582437 400 dbSNP
rs1158610522 422 dbSNP
rs185290497 428 dbSNP
rs964513292 437 dbSNP
rs1191920562 441 dbSNP
rs903176348 441 dbSNP
rs1250073297 443 dbSNP
rs1488376043 445 dbSNP
rs577788958 446 dbSNP
rs978888261 450 dbSNP
rs1330470239 452 dbSNP
rs545070531 456 dbSNP
rs925815971 456 dbSNP
rs1227264419 459 dbSNP
rs956024650 460 dbSNP
rs1284842629 461 dbSNP
rs1219400879 468 dbSNP
rs1000175547 470 dbSNP
rs1291612525 489 dbSNP
rs1432632533 493 dbSNP
rs1389362879 499 dbSNP
rs988764254 508 dbSNP
rs1455715538 527 dbSNP
rs1198203130 529 dbSNP
rs756612869 531 dbSNP
rs370660664 536 dbSNP
rs1033052429 541 dbSNP
rs958818241 548 dbSNP
rs1423284542 549 dbSNP
rs1188724149 550 dbSNP
rs1465586550 551 dbSNP
rs950058972 553 dbSNP
rs1207345399 558 dbSNP
rs1044397692 559 dbSNP
rs1257298625 561 dbSNP
rs373626511 565 dbSNP
rs866578422 566 dbSNP
rs1024481332 567 dbSNP
rs1458040449 571 dbSNP
rs1365570456 575 dbSNP
rs1051319633 578 dbSNP
rs1172722142 578 dbSNP
rs147547509 578 dbSNP
rs759359048 578 dbSNP
rs886051106 578 dbSNP
rs886051107 578 dbSNP
rs897360779 578 dbSNP
rs1187045255 580 dbSNP
rs541503324 582 dbSNP
rs1200594670 583 dbSNP
rs1482612300 584 dbSNP
rs1253887837 591 dbSNP
rs553150319 591 dbSNP
rs1017239724 592 dbSNP
rs754213247 593 dbSNP
rs577769507 595 dbSNP
rs868736403 600 dbSNP
rs1033171100 627 dbSNP
rs1395533349 631 dbSNP
rs118146919 634 dbSNP
rs1331224212 640 dbSNP
rs973767543 662 dbSNP
rs374443282 663 dbSNP
rs755236404 666 dbSNP
rs1286445540 668 dbSNP
rs1370154001 674 dbSNP
rs1328413510 677 dbSNP
rs1228712034 682 dbSNP
rs1167176038 683 dbSNP
rs932391787 691 dbSNP
rs1051348461 701 dbSNP
rs917195044 702 dbSNP
rs1487600247 704 dbSNP
rs912409009 710 dbSNP
rs945228676 718 dbSNP
rs563589753 720 dbSNP
rs1253401776 725 dbSNP
rs188754645 737 dbSNP
rs1042288157 745 dbSNP
rs903817354 747 dbSNP
rs1268140597 751 dbSNP
rs1273454492 756 dbSNP
rs530810790 757 dbSNP
rs560005063 759 dbSNP
rs927320048 759 dbSNP
rs941356063 763 dbSNP
rs1319835100 767 dbSNP
rs1290340765 769 dbSNP
rs1410511361 774 dbSNP
rs1038488572 779 dbSNP
rs1306349381 780 dbSNP
rs1388892457 782 dbSNP
rs770577944 784 dbSNP
rs1054394753 791 dbSNP
rs1163211792 794 dbSNP
rs1456883948 795 dbSNP
rs918655129 805 dbSNP
rs886051108 811 dbSNP
rs1180123481 823 dbSNP
rs894527836 827 dbSNP
rs1013023737 828 dbSNP
rs1179523200 836 dbSNP
rs192636064 837 dbSNP
rs1473221063 838 dbSNP
rs1161763230 839 dbSNP
rs1367133408 845 dbSNP
rs1267861459 856 dbSNP
rs1208991104 857 dbSNP
rs1456030483 859 dbSNP
rs1051224906 861 dbSNP
rs891267186 868 dbSNP
rs541409661 869 dbSNP
rs1286718926 873 dbSNP
rs1235627769 876 dbSNP
rs1040319006 877 dbSNP
rs1385447712 883 dbSNP
rs542673653 894 dbSNP
rs900202267 900 dbSNP
rs560864932 901 dbSNP
rs1321739195 910 dbSNP
rs1305646512 911 dbSNP
rs1457312251 917 dbSNP
rs1024865726 925 dbSNP
rs183715838 944 dbSNP
rs1156290921 945 dbSNP
rs971577004 954 dbSNP
rs1478831338 955 dbSNP
rs1377842526 956 dbSNP
rs1000259834 961 dbSNP
rs1032790865 962 dbSNP
rs1249825036 966 dbSNP
rs955756455 975 dbSNP
rs1004812623 1000 dbSNP
rs1308853529 1008 dbSNP
rs1266367570 1033 dbSNP
rs1202216963 1038 dbSNP
rs1346061720 1040 dbSNP
rs115568221 1041 dbSNP
rs1024156939 1046 dbSNP
rs971181654 1047 dbSNP
rs980056757 1053 dbSNP
rs1244316714 1058 dbSNP
rs34079057 1060 dbSNP
rs1266198547 1062 dbSNP
rs1315697710 1082 dbSNP
rs1415671383 1083 dbSNP
rs1402487322 1106 dbSNP
rs571210831 1107 dbSNP
rs962962394 1110 dbSNP
rs141742028 1115 dbSNP
rs1203056653 1117 dbSNP
rs1391731573 1119 dbSNP
rs1188939464 1124 dbSNP
rs962772378 1131 dbSNP
rs1246110063 1142 dbSNP
rs1251200259 1143 dbSNP
rs1483652967 1150 dbSNP
rs920948410 1152 dbSNP
rs1278190370 1154 dbSNP
rs1198902640 1157 dbSNP
rs953898622 1164 dbSNP
rs918574771 1167 dbSNP
rs930076987 1172 dbSNP
rs1363723584 1174 dbSNP
rs1286413161 1180 dbSNP
rs986815823 1184 dbSNP
rs28536719 1193 dbSNP
rs28576519 1195 dbSNP
rs1333123867 1209 dbSNP
rs1432532376 1210 dbSNP
rs912731369 1213 dbSNP
rs1169057886 1214 dbSNP
rs1423659292 1217 dbSNP
rs551528743 1226 dbSNP
rs986551468 1231 dbSNP
rs912322020 1244 dbSNP
rs1183454108 1249 dbSNP
rs1473183721 1258 dbSNP
rs1237028941 1260 dbSNP
rs1349627097 1265 dbSNP
rs1185863110 1268 dbSNP
rs1039986986 1271 dbSNP
rs779337443 1278 dbSNP
rs1226384729 1283 dbSNP
rs1204909433 1289 dbSNP
rs376795432 1299 dbSNP
rs1368619939 1303 dbSNP
rs904088124 1305 dbSNP
rs368946709 1309 dbSNP
rs936596226 1315 dbSNP
rs1054363681 1323 dbSNP
rs1369453501 1324 dbSNP
rs1410326184 1335 dbSNP
rs570038934 1338 dbSNP
rs1299874610 1341 dbSNP
rs1412378905 1351 dbSNP
rs891438346 1354 dbSNP
rs1308194995 1364 dbSNP
rs1009997560 1371 dbSNP
rs1024058880 1371 dbSNP
rs1408990627 1371 dbSNP
rs373111945 1372 dbSNP
rs1162954243 1375 dbSNP
rs948759858 1392 dbSNP
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rs1025609993 1531 dbSNP
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rs951342601 1544 dbSNP
rs1427520400 1549 dbSNP
rs1192194895 1550 dbSNP
rs1254716273 1554 dbSNP
rs1015772690 1555 dbSNP
rs886051110 1564 dbSNP
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rs1182767245 1574 dbSNP
rs1465877030 1579 dbSNP
rs1268263998 1597 dbSNP
rs1258729848 1609 dbSNP
rs1314826489 1614 dbSNP
rs1302885781 1621 dbSNP
rs912636559 1627 dbSNP
rs1366597180 1628 dbSNP
rs1301189190 1629 dbSNP
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rs1028606091 1647 dbSNP
rs953717715 1650 dbSNP
rs1361127426 1651 dbSNP
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rs1414286643 1657 dbSNP
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rs57589132 1657 dbSNP
rs113071870 1660 dbSNP
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rs1247938347 1662 dbSNP
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rs1019351161 1679 dbSNP
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rs925451150 1685 dbSNP
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rs977857960 1690 dbSNP
rs936931848 1696 dbSNP
rs1277974333 1702 dbSNP
rs925138112 1710 dbSNP
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rs567659062 1721 dbSNP
rs1554527 1725 dbSNP
rs1296705457 1728 dbSNP
rs777972348 1734 dbSNP
rs916520940 1737 dbSNP
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rs1303664377 1747 dbSNP
rs561525888 1748 dbSNP
rs1373832444 1751 dbSNP
rs907244596 1755 dbSNP
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rs546611820 1766 dbSNP
rs906934282 1779 dbSNP
rs1001270387 1787 dbSNP
rs1034611407 1790 dbSNP
rs886051111 1799 dbSNP
rs1297220504 1800 dbSNP
rs1366222302 1801 dbSNP
rs1216339144 1803 dbSNP
rs578008401 1810 dbSNP
rs995834488 1812 dbSNP
rs1312074416 1813 dbSNP
rs770892084 1813 dbSNP
rs1250721443 1830 dbSNP
rs1225083790 1834 dbSNP
rs898651521 1835 dbSNP
rs778489832 1838 dbSNP
rs904312301 1841 dbSNP
rs995694791 1845 dbSNP
rs1265353015 1847 dbSNP
rs1313578458 1848 dbSNP
rs1028574875 1856 dbSNP
rs1414239219 1865 dbSNP
rs1353815702 1872 dbSNP
rs1025511836 1873 dbSNP
rs1410863423 1883 dbSNP
rs1370291564 1886 dbSNP
rs538871697 1896 dbSNP
rs776375597 1898 dbSNP
rs1369547954 1903 dbSNP
rs1019702197 1904 dbSNP
rs966465229 1922 dbSNP
rs951415197 1923 dbSNP
rs1008168963 1926 dbSNP
rs1446800532 1928 dbSNP
rs1432493273 1931 dbSNP
rs1183839087 1933 dbSNP
rs1483273023 1942 dbSNP
rs1019678464 1944 dbSNP
rs1176784102 1967 dbSNP
rs977825563 1968 dbSNP
rs964492959 1971 dbSNP
rs1032083249 1982 dbSNP
rs1232759009 1991 dbSNP
rs957849256 2000 dbSNP
rs1290467305 2001 dbSNP
rs1229301122 2006 dbSNP
rs1408008895 2014 dbSNP
rs990653408 2015 dbSNP
rs188392935 2019 dbSNP
rs1389607501 2022 dbSNP
rs949328859 2038 dbSNP
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rs1391584380 2058 dbSNP
rs1433185899 2069 dbSNP
rs1472736793 2079 dbSNP
rs759262779 2081 dbSNP
rs1179465184 2088 dbSNP
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rs940032434 2098 dbSNP
rs1268009550 2112 dbSNP
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rs1367047212 2120 dbSNP
rs1220313178 2122 dbSNP
rs1467070799 2128 dbSNP
rs1270142181 2133 dbSNP
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rs1447190026 2195 dbSNP
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rs370073425 4836 dbSNP
rs527516741 4838 dbSNP
rs1356709983 4839 dbSNP
rs552328182 4840 dbSNP
rs1017706503 4845 dbSNP
rs1169735676 4853 dbSNP
rs570447852 4875 dbSNP
rs1476689139 4883 dbSNP
rs1443909661 4893 dbSNP
rs572959480 4896 dbSNP
rs964464207 4904 dbSNP
rs1235859355 4905 dbSNP
rs1200540484 4906 dbSNP
rs1318886516 4908 dbSNP
rs1246021789 4911 dbSNP
rs997661681 4914 dbSNP
rs1030060775 4915 dbSNP
rs1014857047 4924 dbSNP
rs955870833 4928 dbSNP
rs16966843 4933 dbSNP
rs143932642 4938 dbSNP
rs1377606331 4940 dbSNP
rs1300583578 4947 dbSNP
rs886051122 4948 dbSNP
rs923434588 4948 dbSNP
rs1400603535 4956 dbSNP
rs1330319829 4962 dbSNP
rs1463703238 4970 dbSNP
rs953567737 4977 dbSNP
rs986820247 4977 dbSNP
rs1273444196 4982 dbSNP
rs1423183757 4983 dbSNP
rs886051123 4988 dbSNP
rs914817065 4993 dbSNP
rs969043337 4997 dbSNP
rs979436269 4998 dbSNP
rs1180625363 5004 dbSNP
rs1458235438 5006 dbSNP
rs946389317 5013 dbSNP
rs1439277870 5019 dbSNP
rs1043430924 5027 dbSNP
rs923567862 5029 dbSNP
rs1244449725 5031 dbSNP
rs1320472618 5036 dbSNP
rs935070534 5053 dbSNP
rs1241478159 5054 dbSNP
rs1242713408 5058 dbSNP
rs1056212837 5059 dbSNP
rs1185472905 5065 dbSNP
rs896343039 5067 dbSNP
rs1392357777 5072 dbSNP
rs1293897906 5074 dbSNP
rs1457185663 5082 dbSNP
rs141174183 5084 dbSNP
rs1160439596 5090 dbSNP
rs1045408728 5091 dbSNP
rs755172917 5091 dbSNP
rs887711774 5093 dbSNP
rs1176842636 5096 dbSNP
rs1169054974 5108 dbSNP
rs8026118 5111 dbSNP
rs1468506348 5114 dbSNP
rs938056007 5118 dbSNP
rs535387072 5125 dbSNP
rs1404839513 5126 dbSNP
rs1487736515 5133 dbSNP
rs146871244 5136 dbSNP
rs1014888300 5141 dbSNP
rs1452984749 5143 dbSNP
rs865774437 5145 dbSNP
rs1284700031 5146 dbSNP
rs1236167997 5151 dbSNP
rs1338097586 5151 dbSNP
rs961981285 5161 dbSNP
rs918038896 5174 dbSNP
rs1343456306 5175 dbSNP
rs998051081 5183 dbSNP
rs541213700 5203 dbSNP
rs1359759890 5204 dbSNP
rs1047925190 5205 dbSNP
rs1467604866 5205 dbSNP
rs532713482 5209 dbSNP
rs534154937 5210 dbSNP
rs888003987 5225 dbSNP
rs1431651674 5229 dbSNP
rs1006896738 5231 dbSNP
rs886051124 5233 dbSNP
rs1039317132 5234 dbSNP
rs900146985 5250 dbSNP
rs986299257 5258 dbSNP
rs78521927 5264 dbSNP
rs1021778340 5270 dbSNP
rs1262324283 5283 dbSNP
rs1320956893 5292 dbSNP
rs768961334 5292 dbSNP
rs1279873370 5295 dbSNP
rs1205886388 5301 dbSNP
rs1259725475 5305 dbSNP
rs968972516 5309 dbSNP
rs997230230 5313 dbSNP
rs977631384 5323 dbSNP
rs1030031173 5337 dbSNP
rs955799109 5346 dbSNP
rs886051125 5347 dbSNP
rs1244296784 5353 dbSNP
rs1009986573 5357 dbSNP
rs1172054537 5363 dbSNP
rs577649995 5370 dbSNP
rs923639936 5370 dbSNP
rs1021431915 5377 dbSNP
rs934975709 5386 dbSNP
rs774531087 5387 dbSNP
rs192448813 5390 dbSNP
rs1190275719 5396 dbSNP
rs115003524 5399 dbSNP
rs184793714 5410 dbSNP
rs1199331155 5411 dbSNP
rs1477015626 5417 dbSNP
rs547680341 5419 dbSNP
rs1259545377 5423 dbSNP
rs959636167 5424 dbSNP
rs1218836737 5429 dbSNP
rs887580351 5430 dbSNP
rs992166434 5433 dbSNP
rs917966244 5441 dbSNP
rs1328101924 5446 dbSNP
rs897866151 5447 dbSNP
rs1450486091 5460 dbSNP
rs187951608 5461 dbSNP
rs997514399 5463 dbSNP
rs929392742 5467 dbSNP
rs560411599 5468 dbSNP
rs909358644 5473 dbSNP
rs1473420312 5478 dbSNP
rs1368333452 5491 dbSNP
rs1182481111 5502 dbSNP
rs1459554467 5507 dbSNP
rs140245434 5521 dbSNP
rs889225014 5530 dbSNP
rs551994427 5541 dbSNP
rs1270637751 5543 dbSNP
rs1211341641 5545 dbSNP
rs1225128743 5548 dbSNP
rs563936449 5553 dbSNP
rs531356888 5555 dbSNP
rs1243657254 5564 dbSNP
rs1021804473 5574 dbSNP
rs755112584 5574 dbSNP
rs1446402419 5576 dbSNP
rs968871780 5577 dbSNP
rs1286490380 5579 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000299084.4 | 3UTR | CUUUUUCUUUUCUUUUUCCUCUCCCCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
124 hsa-miR-451b Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT060018 VANGL2 VANGL planar cell polarity protein 2 2 4
MIRT069874 SRP54 signal recognition particle 54 2 2
MIRT088316 RAB10 RAB10, member RAS oncogene family 2 4
MIRT100747 VEGFA vascular endothelial growth factor A 5 12
MIRT152236 ZNF460 zinc finger protein 460 2 2
MIRT198492 USP14 ubiquitin specific peptidase 14 2 6
MIRT204750 BZW1 basic leucine zipper and W2 domains 1 2 12
MIRT211209 FGF2 fibroblast growth factor 2 2 2
MIRT234352 MSL1 male specific lethal 1 homolog 2 8
MIRT281810 MAP2K1 mitogen-activated protein kinase kinase 1 2 2
MIRT369113 CKMT1A creatine kinase, mitochondrial 1A 2 2
MIRT401349 C5ORF51 chromosome 5 open reading frame 51 2 4
MIRT441509 ERN1 endoplasmic reticulum to nucleus signaling 1 2 2
MIRT441888 RD3 retinal degeneration 3 2 4
MIRT443549 GPR35 G protein-coupled receptor 35 2 2
MIRT444959 ADAM22 ADAM metallopeptidase domain 22 2 2
MIRT445808 NFATC2 nuclear factor of activated T-cells 2 2 2
MIRT446509 ASCC1 activating signal cointegrator 1 complex subunit 1 2 2
MIRT447457 ST18 ST18, C2H2C-type zinc finger 2 2
MIRT448296 ZDHHC3 zinc finger DHHC-type containing 3 2 2
MIRT463178 ZNF281 zinc finger protein 281 2 2
MIRT466606 TBC1D13 TBC1 domain family member 13 2 2
MIRT467235 SPRED1 sprouty related EVH1 domain containing 1 2 2
MIRT471039 PISD phosphatidylserine decarboxylase 2 10
MIRT471892 NUAK2 NUAK family kinase 2 2 2
MIRT474151 LIMA1 LIM domain and actin binding 1 2 6
MIRT474155 LIFR LIF receptor alpha 2 2
MIRT481037 BAZ2A bromodomain adjacent to zinc finger domain 2A 2 2
MIRT483083 GPR75 G protein-coupled receptor 75 2 4
MIRT485208 PRKAR2A protein kinase cAMP-dependent type II regulatory subunit alpha 2 8
MIRT495187 ST3GAL1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 2 2
MIRT495431 ATG7 autophagy related 7 2 2
MIRT499160 FAM83C family with sequence similarity 83 member C 2 6
MIRT499505 GGA3 golgi associated, gamma adaptin ear containing, ARF binding protein 3 2 2
MIRT500400 ZMAT3 zinc finger matrin-type 3 2 10
MIRT500684 TRIM37 tripartite motif containing 37 2 2
MIRT501301 RPS6KB1 ribosomal protein S6 kinase B1 2 2
MIRT504339 ASGR2 asialoglycoprotein receptor 2 2 6
MIRT505931 RCAN3 RCAN family member 3 2 4
MIRT513196 SLU7 SLU7 homolog, splicing factor 2 2
MIRT521807 POM121C POM121 transmembrane nucleoporin C 2 2
MIRT522779 LAMP2 lysosomal associated membrane protein 2 2 6
MIRT530179 ZBED2 zinc finger BED-type containing 2 2 2
MIRT532397 SNX3 sorting nexin 3 2 2
MIRT532482 HOXA13 homeobox A13 2 2
MIRT532538 WDR13 WD repeat domain 13 2 2
MIRT534779 RAN RAN, member RAS oncogene family 2 2
MIRT535719 N4BP1 NEDD4 binding protein 1 2 2
MIRT539310 AKAP12 A-kinase anchoring protein 12 2 4
MIRT539877 RPL32 ribosomal protein L32 2 2
MIRT539891 IRGQ immunity related GTPase Q 2 2
MIRT540063 CEP104 centrosomal protein 104 2 2
MIRT540154 GTF2B general transcription factor IIB 2 4
MIRT540206 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT540391 CRTC1 CREB regulated transcription coactivator 1 2 2
MIRT540595 ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit 2 4
MIRT540733 FABP2 fatty acid binding protein 2 2 2
MIRT540949 SLC25A43 solute carrier family 25 member 43 2 2
MIRT541444 C18orf32 chromosome 18 open reading frame 32 2 4
MIRT541571 ZNF43 zinc finger protein 43 2 4
MIRT541601 ALOX15 arachidonate 15-lipoxygenase 2 2
MIRT541933 ORC1 origin recognition complex subunit 1 2 4
MIRT542394 WDR12 WD repeat domain 12 2 2
MIRT542414 SYNJ2BP synaptojanin 2 binding protein 2 2
MIRT542481 APOC3 apolipoprotein C3 2 2
MIRT542621 XIAP X-linked inhibitor of apoptosis 2 2
MIRT542976 FAM83F family with sequence similarity 83 member F 2 2
MIRT543741 DHCR7 7-dehydrocholesterol reductase 2 2
MIRT544594 AP5Z1 adaptor related protein complex 5 zeta 1 subunit 2 4
MIRT546441 SNX5 sorting nexin 5 2 2
MIRT548213 FKBP1A FK506 binding protein 1A 2 2
MIRT550471 OSCAR osteoclast associated, immunoglobulin-like receptor 2 4
MIRT555230 PRKAA1 protein kinase AMP-activated catalytic subunit alpha 1 2 4
MIRT555428 PPAP2B phospholipid phosphatase 3 2 2
MIRT556368 MAF MAF bZIP transcription factor 2 2
MIRT558149 ELK4 ELK4, ETS transcription factor 2 2
MIRT566181 PTPN14 protein tyrosine phosphatase, non-receptor type 14 2 2
MIRT568468 ARMC12 armadillo repeat containing 12 2 2
MIRT607594 TANGO2 transport and golgi organization 2 homolog 2 2
MIRT617588 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT621244 SIGLEC9 sialic acid binding Ig like lectin 9 2 4
MIRT623679 HOXD4 homeobox D4 2 2
MIRT625989 FGFR1OP FGFR1 oncogene partner 2 4
MIRT627244 ZBTB3 zinc finger and BTB domain containing 3 2 2
MIRT632946 ELOVL6 ELOVL fatty acid elongase 6 2 4
MIRT635872 SLC11A2 solute carrier family 11 member 2 2 2
MIRT636638 CHAF1B chromatin assembly factor 1 subunit B 2 2
MIRT643563 WDR73 WD repeat domain 73 2 2
MIRT647907 CIRH1A UTP4, small subunit processome component 2 2
MIRT652503 TMEM170A transmembrane protein 170A 2 2
MIRT652843 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT653299 SMUG1 single-strand-selective monofunctional uracil-DNA glycosylase 1 2 2
MIRT659383 CREG2 cellular repressor of E1A stimulated genes 2 2 2
MIRT661339 TBC1D15 TBC1 domain family member 15 2 2
MIRT662372 ANKRD42 ankyrin repeat domain 42 2 2
MIRT664322 CD209 CD209 molecule 2 2
MIRT671759 F11R F11 receptor 2 2
MIRT673240 KLHDC8A kelch domain containing 8A 2 2
MIRT682871 C9orf156 tRNA methyltransferase O 2 2
MIRT683171 SF3A1 splicing factor 3a subunit 1 2 2
MIRT684262 TBXA2R thromboxane A2 receptor 2 2
MIRT684395 MCTS1 MCTS1, re-initiation and release factor 2 2
MIRT684883 P4HB prolyl 4-hydroxylase subunit beta 2 2
MIRT686650 TMEM184C transmembrane protein 184C 2 2
MIRT687771 KIAA0355 KIAA0355 2 2
MIRT694352 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT696347 SLC35D2 solute carrier family 35 member D2 2 2
MIRT700480 PUM1 pumilio RNA binding family member 1 2 2
MIRT705909 ADAM9 ADAM metallopeptidase domain 9 2 2
MIRT714076 FNDC3B fibronectin type III domain containing 3B 2 2
MIRT714401 FBXO31 F-box protein 31 2 2
MIRT716442 RPS24 ribosomal protein S24 2 2
MIRT718204 PSMF1 proteasome inhibitor subunit 1 2 2
MIRT721238 CRCP CGRP receptor component 2 2
MIRT721271 SH3D19 SH3 domain containing 19 2 2
MIRT721603 ZNF484 zinc finger protein 484 2 2
MIRT722916 COA4 cytochrome c oxidase assembly factor 4 homolog 2 2
MIRT723457 CUL4A cullin 4A 2 2
MIRT733813 KREMEN1 kringle containing transmembrane protein 1 2 0
MIRT733814 CASK calcium/calmodulin dependent serine protein kinase 2 0
MIRT733815 KLF4 Kruppel like factor 4 2 0
MIRT733816 BCL2 BCL2, apoptosis regulator 2 0
MIRT733817 PCNA proliferating cell nuclear antigen 2 0
MIRT733818 BAX BCL2 associated X, apoptosis regulator 2 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-451b Cisplatin 5460033 NSC119875 approved sensitive High Ovarian Cancer cell line (A2780CIS)
hsa-miR-451b Trastuzumab sensitive High HER2-Positive Breast Cancer tissue
hsa-mir-451b Cisplatin 5460033 NSC119875 approved sensitive cell line (CP20)
hsa-mir-451b Cisplatin 5460033 NSC119875 approved sensitive cell line (CIS)
hsa-miR-451b Neoadjuvant chemotherapy sensitive tissue (breast cancer)

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