miRTarBase - #MIRT467685


—
pre-miRNA Information
pre-miRNA hsa-mir-4699   
Genomic Coordinates chr12: 81158388 - 81158461
Description Homo sapiens miR-4699 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4699-3p
Sequence 46| AAUUUACUCUGCAAUCUUCUCC |67
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN20804631 9 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1419816940 6 dbSNP
rs919201645 9 dbSNP
rs950685323 11 dbSNP
rs985212635 14 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SLC38A2   
Synonyms ATA2, PRO1068, SAT2, SNAT2
Description solute carrier family 38 member 2
Transcript NM_018976   
Expression
Putative miRNA Targets on SLC38A2
3'UTR of SLC38A2
(miRNA target sites are highlighted)		 
>SLC38A2|NM_018976|3'UTR
   1 TTGGCACCACTCAAACTCAAACTCAGTCCATCTGATGCCAGTGTTGAGTAAACTCAACTACTATGAAATTTCACCTAATG
  81 TTTTCAGTTTCACTTCCTTTTGAAGTGCAGATTCCTCGCTGGTTCTTCTGAGTGCAGAATAAGTGAACTTTTTTGTTTTG
 161 TTTTGTTTTTTTAAGAAACTTATCTGTATGTTAGAAATGGATATGAACAACAAAACCACGAGTCTCGGGTTAAGGGAAGT
 241 GACAATTTTATTCCATTCCAGAGAATGGACAAACTCTTAACTTTTATCAAGCCACATGCTTGGCTGTGTCATTGTTTAAC
 321 TTGGATATTTTATGATTTTACTTGAATGTGCCTAATGGAACCATTTGATGTGAGAAACAATTCTTTTTAATTTACAGCAA
 401 AATATTGAATAACCATTGACAAAAACACTATTATTTTTTGTACCAAAAATACTTAAAGACCTCAGAAGCACTCTTTTACT
 481 TTTAAGAAATTGCTTTTTTGAACTTTATTCAGAAGCAGTTATCAATAAATTCCATAAAATAATGTCATTGGTATTTAAAA
 561 ATGAATATTAATATAATGAAATGGTTTGCCTTTTTGTAGGCATAATAAGCCAAATACTTTTTTACCCAAAATAATTTTTA
 641 GAGAAAATGATGTAATGAAAAATTGTACCATGAATTAGGAGCATAGTTTTTTCCATTTAAACGTCACCATTACTTAAAAG
 721 ATGATTGATTATTGCTATACCAAATCAGATGAACTCTGTTCATCACTTTTCTTCTCTGTCCCCAAACAATTTGGTTCATT
 801 CAGACTGAAATGTTTGTGTCTTCAACTTATTAGAATGGAAGATAATGCAGATATTTCTGTGGGAAATAAAATAACTAATT
 881 TTGAGGTACCAAATAGTGCAATTGGGTAAAACAGGGTTTATTCAGTTGCATCTGTCTCCAGTGTTGTATTGACAGCTCTG
 961 GGTCTTTTTTTGGGCCAGCCCTTTTTTGACATTGCTTCCAGCAGTGGAAAATGGGCATTTGATGGCAATAGGCCAAAATT
1041 ATTGTGTCCAGAGAGTACACTTTTTCAAAATGCTCACCTACTGGAAGTGTGAATTACTTGACAATGTATGGCTTAGTTGT
1121 GTTCATGTTTTGTCTACAGTAGAGGTCTAATCCACAGGTTACACCTATGTTTGATATGATATAAGTTCTCTTTGCGTAGG
1201 CCACTGGGTTTCTCATGCAGTAAGCTTTATAAAAACTCATTTGCACTGGACTGTCATCTCATTCTTGTACAACGTAGAAT
1281 TACTTGTTTACATCCAACAAATGGTTAGCTAGGGAAAACAGTGCAAACTGAGTGTTAGTAGTCATTTTGGTCCAACTGCA
1361 TGTCAACCCTTCCATTTCAATCCCAGTTAGAAATGAAAATAATTACTTTGAAACTTGGCTTTAAGAGCACATTTATCGTA
1441 CGTCACAGTGTATGGTGAATATATTATTAAATAATGTGGTACTTCGCTCATCAGGCATAATGTCTAAAATCTAATATACA
1521 TAATTCCATTAAGTGGTTGAAGGAAGCAAATAATGGAATTGTCAATTGGTCATCTGGCTGTAAGGTTTGCCCTTGAACTA
1601 AAAATGTTGTTTGGGGCAAGGGCCAGAAATGTGGAGACATGGTTTTTGTTACGCATTCTTGTATTATATGTGACTAAATT
1681 TACAAACAAGATACATGTGTAATTAAAGACCCTTATGGAACTGGAAGACGTCTTGTAGTGCTACATTGGGTGAAACCGTT
1761 GGTCCATTTTTGTCTGTTTCTATGAAGATAAAATAATTGGGGGCCATCTAGAAATAGAAAGGCAGTGGGAAGACAGATTC
1841 TACGGCACTGCTTTCATTTAATTGGGCTTTAGGCACTCCATTCGAATGCAGAACCTCACCTCTAGTTGAGACCAAGAATT
1921 GGCAAATTTGCATGAGCTCCTGGAAAGAGTTGCTGACTTTGTATCTAAGACCTGCCAGGGAATACCAAGAGTTGTTTCTA
2001 CAGACTTTTTTTTTTTTTTTTGTATGGGAGAAGATACTGTGGCAACCAGGAAGGAATGGAAAAAAAATTCTTTTCTCTAC
2081 AGCAAATTAATGTGAGGAAGCTCCTCCAATCCTCTGGCTATTTAAGGTTCAAAATCAAGTGCCTAGGGAAAATTCCAATG
2161 GATGATTTTCTGGGAGCTATCTTGTCTACCTTGAGGTTCCTGAACAATGAATTCCCATTAATGAGCAGTCTTCAGTATTA
2241 AAACCACTGTCTTGTCACCTCATTTTGCATTACTGTCTTCCGTGGATGTTTCAGTTACAACTGTAATGTTATTTATAGAA
2321 CAACATTAATCCATTAAAGCTAACCTATTTTTCAATATTTATGATAATCTATGTACATATATTGTCTGTCCATATGTATT
2401 TGTAAATAGGTTGTATATAATGTCAGGTTTGGGTCTTGGGTTCAAGTGTATATATTCCTGTAAGTTTCTTAACTGCATTT
2481 TGATGAATTCACATTATGTAACTATAAGAATTGTCCCAAAAGTACCTGTACAGAAAATTGAATATTGAAAAATTGACAAA
2561 TTGTGTACAAACACTAAAAAAAACTTGTTTAAATTGTATTTGCAATAAACAACATCAAATTTTTTCATGAAATCTTGGTA
2641 CAAATTCAGATCTCTTATTTAAAATTTAAATAAGGAATACATTTTCAAAATGCAGTAATCAAAATGTGATCTAGTGTAAT
2721 GAAATAAAATGTGATCTAGTGTAATGGAAGACCTTTGAGAACCTGGGTGTATTAACTTTGTGTATATAGTGTAAATATCC
2801 CCACTGTACTGTTAGAGGCCAACAATTCTAGTATGGCTTGTTGGCAAAGAGTGCTACACCGTTTCAATGAAACAATGTAT
2881 GTTTGTTTTAACTGAACTAAAATAAATACATGCTTAATCCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
2961 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ccuCUUC--UAACGUCUCAUUUaa 5'
             || |  | ||: |||||||  
Target 5' tctGATGCCAGTGTTGAGTAAAct 3'
 31 - 54 137.00 -6.70
2 
miRNA  3' ccucUUCUAACGU---CUCAUUUaa 5'
              || | ||||   |:|||||  
Target 5' accaAATAGTGCAATTGGGTAAAac 3'
 888 - 912 126.00 -6.10
3 
miRNA  3' ccucuuCUAACGUC--UCAUUUAa 5'
                |:||| ||  || |||| 
Target 5' ttaagtGGTTGAAGGAAGCAAATa 3'
 1529 - 1552 126.00 -5.65
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31594381 8 COSMIC
COSN30532866 12 COSMIC
COSN30177516 19 COSMIC
COSN31531038 28 COSMIC
COSN31584913 32 COSMIC
COSN30151587 34 COSMIC
COSN31491582 53 COSMIC
COSN31547275 180 COSMIC
COSN26869599 321 COSMIC
COSN26561380 378 COSMIC
COSN1574772 747 COSMIC
COSN8586206 961 COSMIC
COSN17424967 1007 COSMIC
COSN1148465 1050 COSMIC
COSN31556715 1088 COSMIC
COSN24304337 1115 COSMIC
COSN8540283 1121 COSMIC
COSN31480048 1178 COSMIC
COSN31517743 1277 COSMIC
COSN31568022 1642 COSMIC
COSN31545527 1652 COSMIC
COSN28825241 1766 COSMIC
COSN31531918 1804 COSMIC
COSN31571376 1883 COSMIC
COSN28724706 1932 COSMIC
COSN16313934 1986 COSMIC
COSN20109502 2006 COSMIC
COSN20179675 2068 COSMIC
COSN30543782 2116 COSMIC
COSN31536806 2257 COSMIC
COSN26639484 2332 COSMIC
COSN8586205 2424 COSMIC
COSN1574771 2516 COSMIC
COSN31523257 2529 COSMIC
COSN31543188 2533 COSMIC
COSN7616169 2571 COSMIC
COSN31529085 2618 COSMIC
COSN31548018 2634 COSMIC
COSN31527857 2652 COSMIC
COSN1574770 2670 COSMIC
COSN20109501 2701 COSMIC
COSN26640501 2706 COSMIC
COSN31594087 2818 COSMIC
COSN31583775 2866 COSMIC
COSN31583783 2875 COSMIC
COSN24899097 2878 COSMIC
COSN26669761 2881 COSMIC
COSN16135241 2894 COSMIC
COSN31880757 2900 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs550748503 7 dbSNP
rs779918364 12 dbSNP
rs747754139 14 dbSNP
rs756077736 16 dbSNP
rs747023332 18 dbSNP
rs777919975 19 dbSNP
rs776029303 22 dbSNP
rs1321019901 25 dbSNP
rs1053937619 26 dbSNP
rs746401923 26 dbSNP
rs772499747 26 dbSNP
rs1174583954 28 dbSNP
rs758535974 30 dbSNP
rs753029497 42 dbSNP
rs1286551231 43 dbSNP
rs779112934 46 dbSNP
rs924981856 50 dbSNP
rs1331759497 54 dbSNP
rs531046155 54 dbSNP
rs977777681 56 dbSNP
rs937796025 57 dbSNP
rs926383179 60 dbSNP
rs1213827594 63 dbSNP
rs1207668838 64 dbSNP
rs1445981883 72 dbSNP
rs369429447 77 dbSNP
rs1409215526 79 dbSNP
rs369894359 80 dbSNP
rs1353782056 94 dbSNP
rs919193452 96 dbSNP
rs971945947 103 dbSNP
rs1293095045 107 dbSNP
rs1295094999 116 dbSNP
rs758759430 117 dbSNP
rs975933206 120 dbSNP
rs963277551 122 dbSNP
rs1306259807 124 dbSNP
rs1352470473 125 dbSNP
rs1229525444 142 dbSNP
rs1357929832 143 dbSNP
rs964510444 144 dbSNP
rs1320475401 145 dbSNP
rs1247366250 150 dbSNP
rs1016551489 155 dbSNP
rs985974016 158 dbSNP
rs1248953769 166 dbSNP
rs1276785622 166 dbSNP
rs954279930 168 dbSNP
rs1430640243 170 dbSNP
rs1255328211 174 dbSNP
rs1028369670 177 dbSNP
rs1166572354 179 dbSNP
rs1017540370 182 dbSNP
rs1429336676 183 dbSNP
rs1167002093 185 dbSNP
rs1327161122 187 dbSNP
rs1006103048 196 dbSNP
rs1302348237 201 dbSNP
rs1377532551 203 dbSNP
rs1398375259 207 dbSNP
rs528374575 219 dbSNP
rs1393974531 220 dbSNP
rs74848568 226 dbSNP
rs951994426 227 dbSNP
rs558025809 235 dbSNP
rs1204541991 238 dbSNP
rs894052535 241 dbSNP
rs1184768043 245 dbSNP
rs1183590848 269 dbSNP
rs1243506665 278 dbSNP
rs191851938 278 dbSNP
rs1186480236 280 dbSNP
rs143535420 299 dbSNP
rs904941970 313 dbSNP
rs1194646173 314 dbSNP
rs1357557566 324 dbSNP
rs1468006412 340 dbSNP
rs1303968762 341 dbSNP
rs1466876499 347 dbSNP
rs1365138462 350 dbSNP
rs1272080665 352 dbSNP
rs1433281600 359 dbSNP
rs1046439695 370 dbSNP
rs1366835019 374 dbSNP
rs1214868403 379 dbSNP
rs187010132 380 dbSNP
rs750044112 383 dbSNP
rs1013716623 396 dbSNP
rs1340643391 397 dbSNP
rs1263639792 405 dbSNP
rs895281636 430 dbSNP
rs1206515183 440 dbSNP
rs796835895 440 dbSNP
rs1249729389 446 dbSNP
rs1036011341 452 dbSNP
rs1190879458 453 dbSNP
rs941975829 457 dbSNP
rs1434936480 458 dbSNP
rs758413746 460 dbSNP
rs1055220090 464 dbSNP
rs1388470877 468 dbSNP
rs1322967561 478 dbSNP
rs373206072 478 dbSNP
rs953217091 478 dbSNP
rs1326906999 485 dbSNP
rs1443358103 487 dbSNP
rs534951146 492 dbSNP
rs936956372 502 dbSNP
rs1328384024 506 dbSNP
rs1409334776 510 dbSNP
rs1269760835 517 dbSNP
rs1447401319 525 dbSNP
rs1220590335 531 dbSNP
rs1245148943 532 dbSNP
rs925544725 533 dbSNP
rs976837050 534 dbSNP
rs1195492641 535 dbSNP
rs965416839 541 dbSNP
rs1471891514 548 dbSNP
rs1162065359 552 dbSNP
rs148871163 559 dbSNP
rs577340390 562 dbSNP
rs557307891 565 dbSNP
rs958538842 577 dbSNP
rs759431660 590 dbSNP
rs1193939546 596 dbSNP
rs1032554474 600 dbSNP
rs1002801934 601 dbSNP
rs905330060 605 dbSNP
rs1351333839 609 dbSNP
rs1227468732 615 dbSNP
rs1231570002 616 dbSNP
rs1323729210 618 dbSNP
rs1046588354 623 dbSNP
rs1251145763 625 dbSNP
rs1482140287 633 dbSNP
rs1013364644 634 dbSNP
rs146766767 639 dbSNP
rs1036037582 643 dbSNP
rs1161757506 649 dbSNP
rs941666629 650 dbSNP
rs964542974 651 dbSNP
rs1426139894 656 dbSNP
rs573190061 668 dbSNP
rs1050336936 675 dbSNP
rs1309328231 676 dbSNP
rs931880338 676 dbSNP
rs1447292528 677 dbSNP
rs1282202196 682 dbSNP
rs553434887 682 dbSNP
rs1347316511 683 dbSNP
rs952081430 685 dbSNP
rs1026211113 695 dbSNP
rs994591704 698 dbSNP
rs961372022 702 dbSNP
rs755880607 703 dbSNP
rs1013664606 706 dbSNP
rs1207311910 708 dbSNP
rs527626323 709 dbSNP
rs895229303 716 dbSNP
rs181482489 721 dbSNP
rs1186107787 723 dbSNP
rs1033838275 730 dbSNP
rs865961612 737 dbSNP
rs1188348461 747 dbSNP
rs536952348 753 dbSNP
rs567709946 754 dbSNP
rs988548142 756 dbSNP
rs1169137790 758 dbSNP
rs766136856 761 dbSNP
rs1396668884 766 dbSNP
rs1413821278 771 dbSNP
rs1332165047 776 dbSNP
rs958039829 782 dbSNP
rs557550001 784 dbSNP
rs1033020625 789 dbSNP
rs1230977076 790 dbSNP
rs1432772750 790 dbSNP
rs190440216 802 dbSNP
rs1344447252 806 dbSNP
rs571800123 807 dbSNP
rs1198831762 816 dbSNP
rs1173682365 822 dbSNP
rs1040057379 823 dbSNP
rs943131516 825 dbSNP
rs910290497 830 dbSNP
rs1177003730 831 dbSNP
rs1481127782 833 dbSNP
rs551785947 838 dbSNP
rs985052845 841 dbSNP
rs528537459 843 dbSNP
rs969609143 854 dbSNP
rs752493940 863 dbSNP
rs1013727764 864 dbSNP
rs897582374 869 dbSNP
rs1408134999 871 dbSNP
rs566419003 877 dbSNP
rs1281164117 878 dbSNP
rs1470067048 886 dbSNP
rs1006315030 892 dbSNP
rs887482420 899 dbSNP
rs971968142 901 dbSNP
rs971286929 902 dbSNP
rs1324880516 904 dbSNP
rs1228380730 915 dbSNP
rs1306475953 924 dbSNP
rs772839311 930 dbSNP
rs1050498248 932 dbSNP
rs1206128126 934 dbSNP
rs1261942537 935 dbSNP
rs769023266 944 dbSNP
rs1196052431 946 dbSNP
rs373848450 948 dbSNP
rs1430882105 955 dbSNP
rs1480716655 958 dbSNP
rs1224535238 960 dbSNP
rs1158383722 961 dbSNP
rs1409699031 962 dbSNP
rs1455104797 966 dbSNP
rs931959969 971 dbSNP
rs1373860760 972 dbSNP
rs1390204256 988 dbSNP
rs901758266 989 dbSNP
rs1305017191 1003 dbSNP
rs1346287545 1015 dbSNP
rs1409721313 1018 dbSNP
rs1040189982 1022 dbSNP
rs566084602 1029 dbSNP
rs1319276490 1032 dbSNP
rs79281140 1035 dbSNP
rs1265235600 1042 dbSNP
rs959474463 1043 dbSNP
rs80269170 1046 dbSNP
rs185677356 1048 dbSNP
rs770085819 1055 dbSNP
rs558596900 1058 dbSNP
rs1249454616 1060 dbSNP
rs1353897981 1073 dbSNP
rs981177909 1077 dbSNP
rs1158012647 1080 dbSNP
rs1021626387 1081 dbSNP
rs1419277407 1087 dbSNP
rs1456560634 1101 dbSNP
rs563310060 1104 dbSNP
rs902086072 1111 dbSNP
rs1040089063 1119 dbSNP
rs1475178673 1125 dbSNP
rs768839843 1128 dbSNP
rs942997477 1130 dbSNP
rs888885661 1134 dbSNP
rs992346831 1138 dbSNP
rs962176970 1139 dbSNP
rs1484971627 1157 dbSNP
rs1260205674 1161 dbSNP
rs1293429022 1167 dbSNP
rs1359721689 1169 dbSNP
rs1203724407 1170 dbSNP
rs369749365 1177 dbSNP
rs1481567636 1181 dbSNP
rs746234892 1181 dbSNP
rs543630153 1182 dbSNP
rs1269821204 1183 dbSNP
rs972301045 1190 dbSNP
rs1429358251 1192 dbSNP
rs1231177353 1194 dbSNP
rs376462947 1195 dbSNP
rs370977681 1196 dbSNP
rs1316171188 1203 dbSNP
rs901768274 1220 dbSNP
rs1227287304 1222 dbSNP
rs1397713354 1226 dbSNP
rs139837886 1229 dbSNP
rs371736209 1236 dbSNP
rs1034189651 1238 dbSNP
rs1255292010 1255 dbSNP
rs1459936588 1264 dbSNP
rs747034655 1273 dbSNP
rs146409626 1274 dbSNP
rs773920910 1278 dbSNP
rs762954573 1286 dbSNP
rs1186966844 1291 dbSNP
rs1421706313 1292 dbSNP
rs979500243 1294 dbSNP
rs968533401 1302 dbSNP
rs1429145531 1311 dbSNP
rs891658123 1321 dbSNP
rs1376358292 1338 dbSNP
rs1471278751 1340 dbSNP
rs1054677530 1362 dbSNP
rs542920567 1366 dbSNP
rs1388428510 1368 dbSNP
rs1433862198 1369 dbSNP
rs879089369 1381 dbSNP
rs1286714801 1382 dbSNP
rs1346546538 1386 dbSNP
rs1009723007 1388 dbSNP
rs1299996594 1406 dbSNP
rs936809478 1414 dbSNP
rs1461189176 1419 dbSNP
rs966307054 1420 dbSNP
rs1419025554 1423 dbSNP
rs1213407691 1428 dbSNP
rs1243998885 1437 dbSNP
rs574300411 1438 dbSNP
rs1019184919 1441 dbSNP
rs1007245458 1442 dbSNP
rs1187145290 1444 dbSNP
rs76658095 1447 dbSNP
rs1161754875 1448 dbSNP
rs775618333 1449 dbSNP
rs1049203922 1452 dbSNP
rs962272399 1453 dbSNP
rs1343157800 1463 dbSNP
rs367860060 1475 dbSNP
rs1283808070 1476 dbSNP
rs1246948483 1479 dbSNP
rs538602716 1481 dbSNP
rs571761462 1485 dbSNP
rs765880916 1486 dbSNP
rs1366921892 1491 dbSNP
rs1221175108 1496 dbSNP
rs558331348 1497 dbSNP
rs1490848893 1498 dbSNP
rs1439690143 1499 dbSNP
rs1251656283 1502 dbSNP
rs1469057552 1514 dbSNP
rs1029119129 1517 dbSNP
rs535127177 1518 dbSNP
rs758435768 1523 dbSNP
rs1036222082 1529 dbSNP
rs79548763 1535 dbSNP
rs965653433 1542 dbSNP
rs917179699 1550 dbSNP
rs1303232969 1554 dbSNP
rs1349789275 1559 dbSNP
rs1055604948 1563 dbSNP
rs181000343 1565 dbSNP
rs1171243073 1566 dbSNP
rs891704156 1568 dbSNP
rs1289801404 1595 dbSNP
rs529153248 1607 dbSNP
rs1430317270 1611 dbSNP
rs1436565750 1618 dbSNP
rs1184669542 1625 dbSNP
rs1233787128 1640 dbSNP
rs1054329025 1643 dbSNP
rs569967231 1652 dbSNP
rs188209713 1653 dbSNP
rs533003342 1654 dbSNP
rs1045528092 1658 dbSNP
rs1408110237 1661 dbSNP
rs1330762550 1662 dbSNP
rs979832241 1665 dbSNP
rs948106754 1667 dbSNP
rs917948362 1668 dbSNP
rs968186962 1670 dbSNP
rs1193306807 1673 dbSNP
rs563940594 1681 dbSNP
rs752626994 1685 dbSNP
rs139075475 1691 dbSNP
rs527397549 1695 dbSNP
rs1211360621 1698 dbSNP
rs1247065498 1702 dbSNP
rs7966787 1712 dbSNP
rs1337582964 1715 dbSNP
rs540153251 1715 dbSNP
rs754757570 1718 dbSNP
rs1019214640 1729 dbSNP
rs753756547 1730 dbSNP
rs1442352653 1733 dbSNP
rs1202162495 1735 dbSNP
rs766118382 1738 dbSNP
rs1462358709 1743 dbSNP
rs574237694 1745 dbSNP
rs1183862813 1750 dbSNP
rs1372177727 1757 dbSNP
rs879157648 1758 dbSNP
rs1169155393 1759 dbSNP
rs1420060216 1767 dbSNP
rs974492653 1774 dbSNP
rs1334432574 1778 dbSNP
rs965748716 1783 dbSNP
rs953751892 1804 dbSNP
rs1453618950 1808 dbSNP
rs1317859739 1810 dbSNP
rs1018604525 1814 dbSNP
rs1009849304 1817 dbSNP
rs1270911633 1820 dbSNP
rs1027352772 1822 dbSNP
rs1344905233 1822 dbSNP
rs1265348267 1835 dbSNP
rs994893055 1837 dbSNP
rs1462015075 1840 dbSNP
rs375369136 1842 dbSNP
rs1036494989 1843 dbSNP
rs1014053291 1845 dbSNP
rs1444926317 1857 dbSNP
rs1194692938 1867 dbSNP
rs557678649 1870 dbSNP
rs1325973738 1877 dbSNP
rs1480057018 1878 dbSNP
rs1174243605 1879 dbSNP
rs376158818 1880 dbSNP
rs760427093 1883 dbSNP
rs772566731 1884 dbSNP
rs1383064132 1900 dbSNP
rs925847157 1901 dbSNP
rs544027982 1905 dbSNP
rs1056489837 1929 dbSNP
rs1000864776 1930 dbSNP
rs940645375 1932 dbSNP
rs1403213759 1933 dbSNP
rs150673319 1935 dbSNP
rs1393404494 1939 dbSNP
rs184161935 1940 dbSNP
rs922116706 1943 dbSNP
rs914002170 1945 dbSNP
rs1206580711 1961 dbSNP
rs974878288 1963 dbSNP
rs988189315 1965 dbSNP
rs966202642 1972 dbSNP
rs1270890973 1974 dbSNP
rs1480727453 1975 dbSNP
rs1180800966 1976 dbSNP
rs1361894137 1977 dbSNP
rs1455511192 1996 dbSNP
rs912099855 1997 dbSNP
rs1200734989 1998 dbSNP
rs986285718 2003 dbSNP
rs1422756782 2005 dbSNP
rs1305037785 2006 dbSNP
rs1305279601 2006 dbSNP
rs965800908 2006 dbSNP
rs1337946692 2017 dbSNP
rs1417151719 2019 dbSNP
rs988455178 2021 dbSNP
rs11313787 2022 dbSNP
rs1219539910 2022 dbSNP
rs1248364828 2022 dbSNP
rs202139408 2022 dbSNP
rs5797976 2022 dbSNP
rs796444436 2022 dbSNP
rs869187117 2022 dbSNP
rs1196360752 2023 dbSNP
rs955869796 2024 dbSNP
rs1277615136 2025 dbSNP
rs1366326900 2026 dbSNP
rs112427755 2029 dbSNP
rs1461895321 2034 dbSNP
rs1209469150 2038 dbSNP
rs1296917179 2050 dbSNP
rs1348172669 2052 dbSNP
rs1276188261 2053 dbSNP
rs1236428683 2054 dbSNP
rs1335608434 2057 dbSNP
rs1308134853 2058 dbSNP
rs1412256248 2059 dbSNP
rs535086587 2064 dbSNP
rs1392272207 2068 dbSNP
rs767013273 2070 dbSNP
rs1243373550 2079 dbSNP
rs1381584331 2079 dbSNP
rs979112315 2083 dbSNP
rs1028298212 2097 dbSNP
rs973107760 2101 dbSNP
rs969999524 2114 dbSNP
rs1226082135 2117 dbSNP
rs1249486011 2124 dbSNP
rs572530583 2136 dbSNP
rs1481576898 2139 dbSNP
rs141963885 2143 dbSNP
rs1014631702 2149 dbSNP
rs1460133371 2151 dbSNP
rs1185703077 2157 dbSNP
rs535882276 2158 dbSNP
rs1035082104 2165 dbSNP
rs1013999568 2170 dbSNP
rs1375223493 2175 dbSNP
rs895559986 2177 dbSNP
rs1312363151 2179 dbSNP
rs1336455513 2181 dbSNP
rs74342954 2184 dbSNP
rs568464728 2189 dbSNP
rs140070651 2200 dbSNP
rs539354505 2204 dbSNP
rs1454943615 2205 dbSNP
rs770351392 2207 dbSNP
rs182424006 2215 dbSNP
rs540828740 2228 dbSNP
rs115817008 2246 dbSNP
rs1381093876 2250 dbSNP
rs930931090 2253 dbSNP
rs900755891 2259 dbSNP
rs1363051505 2260 dbSNP
rs746216454 2261 dbSNP
rs527378302 2277 dbSNP
rs777027165 2281 dbSNP
rs892421933 2282 dbSNP
rs1052432507 2284 dbSNP
rs550016812 2298 dbSNP
rs771107829 2303 dbSNP
rs1255249853 2305 dbSNP
rs1264023595 2311 dbSNP
rs1186613610 2312 dbSNP
rs944802078 2315 dbSNP
rs1280113360 2317 dbSNP
rs1203065511 2321 dbSNP
rs911961759 2324 dbSNP
rs986316253 2325 dbSNP
rs1471125620 2329 dbSNP
rs1177604751 2333 dbSNP
rs911655291 2344 dbSNP
rs1354115143 2347 dbSNP
rs932114331 2355 dbSNP
rs988548835 2358 dbSNP
rs920865759 2360 dbSNP
rs561857721 2361 dbSNP
rs1342390618 2363 dbSNP
rs1225051149 2369 dbSNP
rs1343582670 2369 dbSNP
rs1316275033 2370 dbSNP
rs1316545247 2371 dbSNP
rs1400375432 2372 dbSNP
rs747211716 2373 dbSNP
rs925648671 2376 dbSNP
rs974026597 2377 dbSNP
rs978441736 2380 dbSNP
rs1198803794 2381 dbSNP
rs1159651376 2385 dbSNP
rs1481742372 2390 dbSNP
rs1192126250 2392 dbSNP
rs1407778376 2395 dbSNP
rs547869678 2399 dbSNP
rs962318327 2409 dbSNP
rs1399726042 2412 dbSNP
rs1156445542 2419 dbSNP
rs1346625238 2421 dbSNP
rs531384772 2423 dbSNP
rs992439345 2424 dbSNP
rs866721871 2427 dbSNP
rs1301997610 2431 dbSNP
rs1022847264 2438 dbSNP
rs1406761651 2450 dbSNP
rs959803908 2452 dbSNP
rs1372288355 2462 dbSNP
rs376631904 2473 dbSNP
rs1015425825 2474 dbSNP
rs1415391881 2477 dbSNP
rs1295252961 2485 dbSNP
rs1289755480 2490 dbSNP
rs1001388368 2497 dbSNP
rs1490977299 2503 dbSNP
rs562471650 2505 dbSNP
rs1473075022 2511 dbSNP
rs190189018 2516 dbSNP
rs1190330725 2518 dbSNP
rs777877263 2525 dbSNP
rs74659601 2531 dbSNP
rs564648643 2540 dbSNP
rs1210203067 2545 dbSNP
rs944666148 2556 dbSNP
rs564490451 2559 dbSNP
rs890558027 2560 dbSNP
rs1406628780 2562 dbSNP
rs1324068533 2563 dbSNP
rs769449826 2564 dbSNP
rs367638645 2568 dbSNP
rs1272918917 2569 dbSNP
rs932175129 2575 dbSNP
rs1039232555 2584 dbSNP
rs944946932 2584 dbSNP
rs1228986368 2585 dbSNP
rs1361629365 2585 dbSNP
rs890646732 2585 dbSNP
rs185464158 2588 dbSNP
rs1268515057 2590 dbSNP
rs868743979 2595 dbSNP
rs973590681 2596 dbSNP
rs1430038279 2606 dbSNP
rs1239235148 2610 dbSNP
rs778993356 2611 dbSNP
rs1457919802 2612 dbSNP
rs1182645721 2613 dbSNP
rs572436636 2613 dbSNP
rs1327255842 2614 dbSNP
rs1473458571 2614 dbSNP
rs776850641 2615 dbSNP
rs1418698302 2616 dbSNP
rs1438969576 2618 dbSNP
rs755026536 2625 dbSNP
rs555874674 2632 dbSNP
rs1451689736 2636 dbSNP
rs925689996 2638 dbSNP
rs978834498 2641 dbSNP
rs753664955 2647 dbSNP
rs992470249 2650 dbSNP
rs959668928 2652 dbSNP
rs915846595 2657 dbSNP
rs927053246 2658 dbSNP
rs980219795 2670 dbSNP
rs959929424 2674 dbSNP
rs558475896 2675 dbSNP
rs1240807166 2678 dbSNP
rs1021910061 2681 dbSNP
rs1443850907 2686 dbSNP
rs1010054107 2693 dbSNP
rs1165652163 2695 dbSNP
rs1241063414 2705 dbSNP
rs955959891 2714 dbSNP
rs1390237923 2731 dbSNP
rs576343138 2741 dbSNP
rs1019514018 2744 dbSNP
rs556150567 2745 dbSNP
rs546198315 2747 dbSNP
rs1222709968 2748 dbSNP
rs890424205 2753 dbSNP
rs1027701176 2756 dbSNP
rs1317702269 2758 dbSNP
rs1050449045 2760 dbSNP
rs996700425 2763 dbSNP
rs539317548 2767 dbSNP
rs1401961955 2769 dbSNP
rs899236707 2775 dbSNP
rs995265456 2779 dbSNP
rs1038298028 2783 dbSNP
rs1222059814 2790 dbSNP
rs147547705 2797 dbSNP
rs192883714 2800 dbSNP
rs534035442 2802 dbSNP
rs1046296 2803 dbSNP
rs1340222447 2808 dbSNP
rs1346655706 2810 dbSNP
rs908145318 2813 dbSNP
rs1200713553 2815 dbSNP
rs755892886 2823 dbSNP
rs575513698 2828 dbSNP
rs568061025 2830 dbSNP
rs1053702368 2831 dbSNP
rs1324981929 2837 dbSNP
rs1013523787 2840 dbSNP
rs1379204461 2842 dbSNP
rs998991315 2844 dbSNP
rs1436844676 2849 dbSNP
rs1404974412 2853 dbSNP
rs1351398693 2856 dbSNP
rs548222696 2857 dbSNP
rs1042785798 2859 dbSNP
rs75416675 2860 dbSNP
rs1403687738 2861 dbSNP
rs1303819013 2868 dbSNP
rs767080936 2875 dbSNP
rs915604790 2879 dbSNP
rs914305202 2881 dbSNP
rs1056816462 2889 dbSNP
rs1348114830 2889 dbSNP
rs1286188914 2897 dbSNP
rs1220223651 2899 dbSNP
rs938616075 2899 dbSNP
rs989064632 2901 dbSNP
rs1269398716 2906 dbSNP
rs955824333 2908 dbSNP
rs1362268077 2909 dbSNP
rs1452209615 2909 dbSNP
rs116709875 2910 dbSNP
rs552224039 2917 dbSNP
rs983024378 2919 dbSNP
rs1192145582 2921 dbSNP
rs1008190593 2923 dbSNP
rs112824646 2924 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 54407.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM4903825
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / PID14_NS
Location of target site NM_018976 | 3UTR | AAAAUGUGAUCUAGUGUAAUGGAAGACCUUUGAGAACCUGGGUGUAUUAACUUUGUGUAUAUAGUGUAAAUAUCCCCACUGUACUGUUAGAGGCCAACAAUUCUAGUAUGGCUUGUUGGCAAAGAGUGCUACACC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161237
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903826
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / PID21_NS
Location of target site NM_018976 | 3UTR | UUUGUAAAUAGGUUGUAUAUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161237
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903827
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / PID14_9124
Location of target site NM_018976 | 3UTR | AAAUAGGUUGUAUAUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161237
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903828
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / PID21_9124
Location of target site NM_018976 | 3UTR | AUGUAUUUGUAAAUAGGUUGUAUAUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161237
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_018976 | 3UTR | AAACAACAUCAAAUUUUUUCAUGAAAUCUUGGUACAAAUUCAGAUCUCUUAUUUAAAAUUUAAAUAAGGAAUACAUUUUCAAAAUGCAGUAAUCAAAAUGUGAUCUAGUGUAAUGAAAUAAAAUGUGAUCUAGUGUAAUGGAAGACCUUUGAGAACCUGGGUGUAUUAACUUUGUGUAUAUAGUGUAAAUAUCCCCACUGUACUGUUAGAGGCCAACAAUUCUAGUAUGGCUUGUUGGCAAAGAGUGCUACACC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_018976 | 3UTR | UCUUGGUACAAAUUCAGAUCUCUUAUUUAAAAUUUAAAUAAGGAAUACAUUUUCAAAAUGCAGUAAUCAAAAUGUGAUCUAGUGUAAUGAAAUAAAAUGUGAUCUAGUGUAAUGGAAGACCUUUGAGAACCUGGGUGUAUUAACUUUGUGUAUAUAGUGUAAAUAUCCCCACUGUACUGUUAGAGGCCAACAAUUCUAGUAUGGCUUGUUGGCAAAGAGUGCUACACC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_018976 | 3UTR | UUGGUACAAAUUCAGAUCUCUUAUUUAAAAUUUAAAUAAGGAAUACAUUUUCAAAAUGCAGUAAUCAAAAUGUGAUCUAGUGUAAUGAAAUAAAAUGUGAUCUAGUGUAAUGGAAGACCUUUGAGAACCUGGGUGUAUUAACUUUGUGUAUAUAGUGUAAAUAUCCCCACUGUACUGUUAGAGGCCAACAAUUCUAGUAUGGCUUGUUGGCAAAGAGUGCUACACC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_018976 | 3UTR | UGUAAAUAUCCCCACUGUACUGUUAGAGGCCAACAAUUCUAGUAUGGCUUGUUGGCAAAGAGUGCUACACC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 9 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_018976 | 3UTR | AUUUUCAAAAUGCAGUAAUCAAAAUGUGAUCUAGUGUAAUGAAAUAAAAUGUGAUCUAGUGUAAUGGAAGACCUUUGAGAACCUGGGUGUAUUAACUUUGUGUAUAUAGUGUAAAUAUCCCCACUGUACUGUUAGAGGCCAACAAUUCUAGUAUGGCUUGUUGGCAAAGAGUGCUACACC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 10 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_018976 | 3UTR | UUUAAAUAAGGAAUACAUUUUCAAAAUGCAGUAAUCAAAAUGUGAUCUAGUGUAAUGAAAUAAAAUGUGAUCUAGUGUAAUGGAAGACCUUUGAGAACCUGGGUGUAUUAACUUUGUGUAUAUAGUGUAAAUAUCCCCACUGUACUGUUAGAGGCCAACAAUUCUAGUAUGGCUUGUUGGCAAAGAGUGCUACACC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 11 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000256689.5 | 3UTR | UGUAUAUAGUGUAAAUAUCCCCACUGUACUGUUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 12 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000256689.5 | 3UTR | UGUAUAUAGUGUAAAUAUCCCCACUGUACUGUUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
88 hsa-miR-4699-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT056239 RAB18 RAB18, member RAS oncogene family 2 2
MIRT080536 PMAIP1 phorbol-12-myristate-13-acetate-induced protein 1 2 2
MIRT095600 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT128911 KMT2A lysine methyltransferase 2A 2 2
MIRT161904 FXR1 FMR1 autosomal homolog 1 2 4
MIRT177614 UBE2D1 ubiquitin conjugating enzyme E2 D1 2 4
MIRT231364 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 6
MIRT285164 SERBP1 SERPINE1 mRNA binding protein 1 2 2
MIRT307337 SEC22C SEC22 homolog C, vesicle trafficking protein 2 2
MIRT317083 DEK DEK proto-oncogene 2 2
MIRT347692 LSM14A LSM14A, mRNA processing body assembly factor 2 2
MIRT358438 STC2 stanniocalcin 2 2 2
MIRT362592 PURB purine rich element binding protein B 2 4
MIRT441441 HAVCR1 hepatitis A virus cellular receptor 1 2 2
MIRT445264 LOH12CR2 loss of heterozygosity, 12, chromosomal region 2 (non-protein coding) 2 4
MIRT447097 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT449013 ANKRD17 ankyrin repeat domain 17 2 2
MIRT450358 SETD9 SET domain containing 9 2 2
MIRT454976 MYC MYC proto-oncogene, bHLH transcription factor 2 2
MIRT461922 NECAB3 N-terminal EF-hand calcium binding protein 3 2 2
MIRT465191 TRPS1 transcriptional repressor GATA binding 1 2 2
MIRT467685 SLC38A2 solute carrier family 38 member 2 2 4
MIRT468003 SKI SKI proto-oncogene 2 2
MIRT473127 MLLT10 MLLT10, histone lysine methyltransferase DOT1L cofactor 2 2
MIRT476370 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT477067 FAM208B family with sequence similarity 208 member B 2 4
MIRT479950 CBX4 chromobox 4 2 4
MIRT481092 B3GNT2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 2 2
MIRT481932 ANKRD11 ankyrin repeat domain 11 2 12
MIRT482239 AHCY adenosylhomocysteinase 2 2
MIRT485804 ARPP19 cAMP regulated phosphoprotein 19 2 2
MIRT492026 TWF1 twinfilin actin binding protein 1 2 2
MIRT494389 CALM3 calmodulin 3 2 2
MIRT504115 GPR158 G protein-coupled receptor 158 2 2
MIRT506346 NUP54 nucleoporin 54 2 4
MIRT510081 PPWD1 peptidylprolyl isomerase domain and WD repeat containing 1 2 4
MIRT521019 SLC8A1 solute carrier family 8 member A1 2 2
MIRT524709 BTBD3 BTB domain containing 3 2 2
MIRT524989 AGO2 argonaute 2, RISC catalytic component 2 6
MIRT525003 ACVR1B activin A receptor type 1B 2 2
MIRT528064 OLAH oleoyl-ACP hydrolase 2 2
MIRT528865 C1orf147 chromosome 1 open reading frame 147 2 2
MIRT532182 DOCK7 dedicator of cytokinesis 7 2 2
MIRT533592 TOB1 transducer of ERBB2, 1 2 6
MIRT538835 C16orf70 chromosome 16 open reading frame 70 2 2
MIRT539488 ACVR1C activin A receptor type 1C 2 2
MIRT539542 ABCD2 ATP binding cassette subfamily D member 2 2 2
MIRT542123 VENTX VENT homeobox 2 2
MIRT542993 ELOVL5 ELOVL fatty acid elongase 5 2 2
MIRT543067 ATXN7L3B ataxin 7 like 3B 2 2
MIRT543370 CYB5B cytochrome b5 type B 2 2
MIRT545080 TSEN34 tRNA splicing endonuclease subunit 34 2 2
MIRT545258 TRIM36 tripartite motif containing 36 2 4
MIRT549144 BRIX1 BRX1, biogenesis of ribosomes 2 2
MIRT549403 AKAP1 A-kinase anchoring protein 1 2 2
MIRT552143 MRPL34 mitochondrial ribosomal protein L34 2 2
MIRT554781 RHEBP1 RHEB pseudogene 1 2 4
MIRT555991 NFYB nuclear transcription factor Y subunit beta 2 2
MIRT556425 LONRF3 LON peptidase N-terminal domain and ring finger 3 2 2
MIRT558325 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT561357 YWHAH tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein eta 2 2
MIRT562240 HMGB1 high mobility group box 1 2 2
MIRT562269 GOLT1B golgi transport 1B 2 2
MIRT564020 FAM103A1 family with sequence similarity 103 member A1 2 2
MIRT564832 ZBTB16 zinc finger and BTB domain containing 16 2 2
MIRT565350 TMED2 transmembrane p24 trafficking protein 2 2 2
MIRT565678 SET SET nuclear proto-oncogene 2 2
MIRT576547 Txlna taxilin alpha 2 2
MIRT609358 ZNF664 zinc finger protein 664 2 2
MIRT610646 CTGF connective tissue growth factor 2 2
MIRT624681 ARAP2 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 2 2
MIRT637118 AGTPBP1 ATP/GTP binding protein 1 2 2
MIRT639955 PRRC2B proline rich coiled-coil 2B 2 2
MIRT644051 WWC2 WW and C2 domain containing 2 2 2
MIRT650463 SLC35B1 solute carrier family 35 member B1 2 2
MIRT651094 ZNF516 zinc finger protein 516 2 2
MIRT655268 PER2 period circadian clock 2 2 2
MIRT657450 HEYL hes related family bHLH transcription factor with YRPW motif-like 2 2
MIRT692248 POLR3F RNA polymerase III subunit F 2 2
MIRT695239 PBK PDZ binding kinase 2 2
MIRT696024 NDUFS3 NADH:ubiquinone oxidoreductase core subunit S3 2 2
MIRT698486 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT700581 PRSS22 protease, serine 22 2 2
MIRT704540 CNEP1R1 CTD nuclear envelope phosphatase 1 regulatory subunit 1 2 2
MIRT704723 CEP135 centrosomal protein 135 2 2
MIRT705194 BTG1 BTG anti-proliferation factor 1 2 2
MIRT710286 CSNK1G3 casein kinase 1 gamma 3 2 2
MIRT719623 TUBGCP3 tubulin gamma complex associated protein 3 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4699 Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-miR-4699-3p Docetaxel+Cisplatin+5-Fluorouracil resistant tissue (hypopharyngeal squamous cell carcinoma)

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