miRTarBase - #MIRT468602


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pre-miRNA Information
pre-miRNA hsa-mir-4471   
Genomic Coordinates chr8: 100382763 - 100382845
Description Homo sapiens miR-4471 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4471
Sequence 49| UGGGAACUUAGUAGAGGUUUAA |70
Evidence Experimental
Experiments Illumina
Putative Targets

Gene Information
Gene Symbol SERBP1   
Synonyms CGI-55, CHD3IP, HABP4L, PAI-RBP1, PAIRBP1
Description SERPINE1 mRNA binding protein 1
Transcript NM_001018067   
Other Transcripts NM_001018068 , NM_001018069 , NM_015640   
Expression
Putative miRNA Targets on SERBP1
3'UTR of SERBP1
(miRNA target sites are highlighted)		 
>SERBP1|NM_001018067|3'UTR
   1 CTGGATGCCATAAGACAACCCTGGTTCCTTTGTGAACCCTTCTGTTCAAAGCTTTTGCATGCTTAAGGATTCCAAACGAC
  81 TAAGAAATTAAAAAAAAAAAGACTGTCATTCATACCATTCACACCTAAAGACTGAATTTTATCTGTTTTAAAAATGAACT
 161 TCTCCCGCTACACAGAAGTAACAAATATGGTAGTCAGTTTTGTATTTAGAAATGTATTGGTAGCAGGGATGTTTTCATAA
 241 TTTTCAGAGATTATGCATTCTTCATGAATACTTTTGTATTGCTGCTTGCAAATATGCATTTCCAAACTTGAAATATAGGT
 321 GTGAACAGTGTGTACCAGTTTAAAGCTTTCACTTCATTTGTGTTTTTTAATTAAGGATTTAGAAGTTCCCCCAATTACAA
 401 ACTGGTTTTAAATATTGGACATACTGGTTTTAATACCTGCTTTGCATATTCACACATGGTCAACTGGGACATGTTAAACT
 481 TTGATTTGTCAAATTTTATGCTGTGTGGAATACTAACTATATGTATTTTAACTTAGTTTTAATATTTTCATTTTTGGGGA
 561 AAAATCTTTTTTCACTTCTCATGATAGCTGTTATATATATATGCTAAATCTTTATATACAGAAATATCAGTACTTGAACA
 641 AATTCAAAGCACATTTGGTTTATTAACCCTTGCTCCTTGCATGGCTCATTAGGTTCAAATTATAACTGATTTACATTTTC
 721 AGCTATATTTACTTTTTAAATGCTTGAGTTTCCCATTTTAAAATCTAAACTAGACATCTTAATTGGTGAAAGTTGTTTAA
 801 ACTACTTATTGTTGGTAGGCACATCGTGTCAAGTGAAGTAGTTTTATAGGTATGGGTTTTTTCTCCCCCTTCACCAGGGT
 881 GGGTGGAATAAGTTGATTTGGCCAATGTGTAATATTTAAACTGTTCTGTAAAATAAGTGTCTGGCCATTTGGTATGATTT
 961 CTGTGTGTGAAAGGTCCCAAAATCAAAATGGTACATCCATAATCAGCCACCATTTAACCCTTCCTTGTTCTAAAACAAAA
1041 ACCAAAGGGCGCTGGTTGGTAGGGTGAGGTGGGGGAGTATTTTAATTTTTGGAATTTGGGAAGCAGACAGCTTTACTTTG
1121 TAAGGTTGGAACAGCAGCACTATACATGAAATATAAACCAAAAACCTTTACTGTTTCTAAATTTCCTAGATTGCTATTAT
1201 TTGGTTGTAAGTTGAGTATTCCACAGAAAGTGGTAATTATCTCTTCTCTCTTCCTCCATTAGAAAATTAGGTAAATAATG
1281 GATTCCTATAATGGGAGCATCACCACTTATTAAAACACACATAGAATGATGAATTAAAAAAGTTTTCTAGGATTGTCTTT
1361 TATTCTGCCACATTTATTGATAAACAGTGAAGGAATTTTTAAAAAATTTTTAAGAATTGTTTGTCACGTCATTTTTAGAA
1441 ATGTTCTACCTGTATATGGTAATGTCCAGTTTTAAAAATATTGGACATCTTCAATCTTAAACATTTCTATTTAGCTGATT
1521 GGTTCTCACATATACTTCTAAAAGAAACTTTTATGTTATAAGAGTTACTTTTTGGATAAGATTTATTAATCTCAGTTACC
1601 TACTATTCTGACATTTTAGGAAGGAGGTAATTGTTTTTAATGATGGATAAACTTGTGCTGGTGTTTTGGATCTTATGATG
1681 CTGAGCATGTTCTGCACTGGTGCTAATGTCTAATATAATTTTATATTTACACACATACGTGCTACCCAGAGATTAATTTA
1761 GTCCATATGAACTATTGACCCATTGTTCATTGAGACAGCAACATACGCACTCCTAAATCAGTGTGTTTAGACTTTTCAAG
1841 TATCTAACTCATTTCCAAACATGTACCATGTTTTATAAACCTCTTGATTTCCAGCAACATACTATAGAAAACACCTGCTA
1921 CTCAAAACACAACTTCTCAGTGTCATCCATTGCTGTCGTGAGAGACAACATAGCAATATCTGGTATGTTGCAAGCTTTCA
2001 AGATAGCCTGAACTTAAAAAGTTGGTGCATTAGTTGTATCTGATGGATATAAATTTGCCTCCTAGTTCACTTTGTGTCAA
2081 GAGCTAAAACTGTGAACCTAACTTTCTCTTATTGGTGGGTAATAACTGAAAATAAAGATTTATTTTCATGCTCACTTCTT
2161 AAAAGTCATAAAAACAATCAAATAGGATCATGTTTATTGTCATGTGTTTCCTGGTTTCTGACCTGTGTGCACACCCCTGT
2241 GTGTTTATAATTTTTAAATTGAATTTTATATGGGGTTTTTATTTGCTAAAAACCAGGCTGTTGAATCACATTTGGGAAGG
2321 GTACTTATCTTAATGACTAATGACTTAATTGGGAAAGTTGAATTCTTGTAAAATACAAAATCCAAGGACTTCTTGGATTT
2401 AATCTGATTGTCACTTCTTAGCAGATCACTTTTTTGATAATGAAAGTTAAGCATACTGAATGCTACTTTTGATTGACAAA
2481 CTGGCTATAATAGTCTAGGGGAAAAATCCCTAAACAGATAAAGATTCCTAAAGTAATGGTGGCAGCTGATGTTTCAGTGA
2561 ACTTTTATCTTGATGCGTTTAAATGGAAGTAATGCCAGACCTGAGATTTTTAAGGCATTTTTACAGCTTGTATTGAAATG
2641 ATTGGAGACATGGTTTCTTTATTAGCTATTTTGAGACCTGTGGAGTTAAGCAAGACTTTTAAAAATTGGCACCATATACA
2721 TCTAGTTAGTTCCTTTACTCTTATTTTTTTAAATAAAAGTAGTACACATCATTTCCAGGGTTGTAAATATATTTGGGGCT
2801 TGTTTTTGGTATGGATTTAAAAGGAGGATATTAAGTATTCATTCTAATTTTGTTATTTTTCTAGTTGCCAGAGATGGTTG
2881 CACTGAAATAGAACAGGGAGTTGCATACAAAGCCTAAATGTGTATTGGATTTCGAAAATACTAGGTTGGTGCAATTGGTT
2961 TTGTACCAACCTAACATGTCTTTAGGAAAGTACCATCATGTGGAAGGAAACAACAGGTGTTAAAAGGTTCAAAGGAATGA
3041 GAAATAGGAAGTTACTAGAACCTAACTGATGTTGACCTTAGAGGTAAGATTATTCAGGTATATTAGTGGACCTCCAGTCC
3121 AATGGTATAGCAAATTCCAGGGATCTCAGGTGCATGCAATTTTACTTTCTAAAGTAAACACTTAGAAAATAGATTATAAC
3201 CCAGACGTTTTGGATTATACTGAGACAAATATGTAAATAAGTTTTAGCAAGTCTGAACATGTACCAGCGAGATCTTCAGG
3281 TTAACTAAGAAAAGCCCAGAAACTTCATTATTTACTGTGCTTTGTATGGCATAACTGGTAACAAGGCAGTAAAATGATAC
3361 ATATTTGAACTGGACCATAGTAATTAAATGATTTATCAATATCATTTGCAAGATAATTGTCAGGTTGAGTTAATAGTAAG
3441 TGGCAGCTTCCCAGAAATTTGGGTTATTTGGCCTAAGCTGTGCCCTGGGATTACCTCTTCATCTTCCTTGACTTTTAAGT
3521 TCAAATTTGGAGGTTATGTGAAGTGATTGAAATAAATCTTTCAGGCTGAGGAAGTCGGTAATTTCAAGAATATAGTGAAA
3601 ACAAGGTTGTAATCTAAACATGAGAAGCTTAAGTTTAGGAAATGGTTAGAATATAAATTGCTAAAGCCATCATGATTTTG
3681 GCCACAGATGAAAATATGAACACTGGAAATGAGCGCCATTTAAATGAGATGCTGTATGTAAGCCAGGGGTCAGCAAAGTT
3761 CAGCCTGTGACCTGGTGTGTGTGGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCGTGTCCCTGAGTTAAGAA
3841 TGGTTTTTAGGCTTGTATAGGATTAAAAAAAAAAAAAACCCACAGAAAAATGTAGGCAGCCCAGCATAAGATACCGCCTT
3921 TCACAGAAATGTTTGCTGACCCCGGAACTGTCACTCTCGGGTTACAAGAGTTTGTTTCTTTGAAACAGTCTGGCTCTGTC
4001 ACCCAGGCTGGAGTGCAGTGGCATGATCTCAGGTCACTGCAGCCTCCACCTCCCGGGTTCAAGCAATTCTGCCTCAGCCT
4081 CCTGAGTAGCTGGGATTACAGGTGTGCACCACCACAGACAGCTAATTTTACAGGTGTACACCACCACACCCAAGAATCAC
4161 TTGAACCCGGGAGGTGGGGGTTGCAGTGAGCCAAGATCATAGCACTGTACTCCAGTCTGGGTGACACACTGTCTGAAAAA
4241 TAAAAGTTTAGTTCTAGGTACAAATTAAGTGGTCTACCCAACAGGAAGCTGTGAAATTAGAAGTAATTTTAAAGCATACT
4321 TTACACCTCTATATAATCAAAGTAAGGGCAAGATAAAACTTGTTAGTAAAACATGTTTTATTATTTTTTAGATAGGTAGC
4401 CTGCAACATAAAATATATTTTGAAAGCTGTTAAGGGGTGTATAATCTGTTAAAAAATACCATGATTAGTATTTCACATTT
4481 AGTGACTCAGATCCCTTTGTGTAAGTCCTTTGCGTTGTGCAAAGAGGTTTTTCTATGAGATGAGAATTATGAACACTTCA
4561 TATAGGTAAATTCCATAGGTTGAGCTGGGGCAGAAATTAATGGCTCCTGGAGATTGCATCTTTTTTTTTTTTTTTTTGAG
4641 CTTAGAATTCCCATTTGGACAGAATTTAGCTTTTGTGCTGTTGATTACTTCTGTACTAAACTGGTAGCCAATTGTTCACT
4721 TCTAAATGGAAGGGAAAAAGTTACCCACACAAGTTAGAAAATGATTTACCGAATTATTTTTTTGAGTTAGTATGTATATA
4801 CTGTTTTAAATCAGTAATGTTTGTTCCTTTTGCTGCCCATTTGGGAGTATGTGGCAATTCCTAGTGCTCTTGTATGACAT
4881 TACTCTTCTTGAGACTTGTATATGCAAGAAAGTATATATAAAAGATGCCTGGTGGTAACTTTGTATCTGAGTTCTGATTC
4961 ATTATGGACTTTTAGAAATCTATTTAGATAATTGGTTCATACTAGGTGCTCAATTACTCTGACCTTGTGTGGCTTAATCC
5041 TTAAATAGTTGCTTTAGGTGTTACTGGGTGGAAGCATGGAAAGTGAAGGGCTAATATTAAGGATTTTTATGTATTACTGA
5121 GTAGGGAAAGTGGGAAGTAGCTTATCTTTGGACAGTTGTATTACTTTGCACTAATCACCTTGTTTGCAGTTGTAGCTGAT
5201 TCAGTTCTAGATTTTAGGACCAAAAAGATCTCTAATTTAAAGAAACAGTTTTTATATACCTAGAATGAAGATTCTGTTTA
5281 AAGCGGTTTTGGTTAACTTGGTTCTTGACATTTGCCTAAAATTTTGTTGGATTGGGACTAAAATGTTCTATTAGCCAATG
5361 AATAACGTCCAAGTAAATTTTTGTTTTATTTTGGGAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' aaUUUGGAGAUGAUUCAAGGGu 5'
            ||:  |:||  |||||||| 
Target 5' ttAAGGATTTA-GAAGTTCCCc 3'
 371 - 391 155.00 -12.90
2 
miRNA  3' aaUUUGGAGAUGAUUCAAGGGu 5'
            | || |||| | ||||||: 
Target 5' atATACATCTAGTTAGTTCCTt 3'
 2714 - 2735 152.00 -13.10
3 
miRNA  3' aauUUGGAGAU-----GAUUCAAGGGu 5'
             | ::|:||     :|:||||:|| 
Target 5' tttACTTTTTAAATGCTTGAGTTTCCc 3'
 728 - 754 135.00 -11.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30512196 45 COSMIC
COSN26648300 80 COSMIC
COSN31561544 84 COSMIC
COSN30535725 89 COSMIC
COSN31607447 130 COSMIC
COSN31585098 135 COSMIC
COSN505710 149 COSMIC
COSN31574920 184 COSMIC
COSN31524103 240 COSMIC
COSN31529908 240 COSMIC
COSN30291536 398 COSMIC
COSN10052130 428 COSMIC
COSN31567425 641 COSMIC
COSN31542786 937 COSMIC
COSN31485019 980 COSMIC
COSN31547201 1110 COSMIC
COSN31564840 1156 COSMIC
COSN22886138 1386 COSMIC
COSN27946100 1496 COSMIC
COSN17131948 1732 COSMIC
COSN17182203 1850 COSMIC
COSN29659341 1975 COSMIC
COSN26449208 2025 COSMIC
COSN8143274 2223 COSMIC
COSN32064914 2274 COSMIC
COSN21820648 2657 COSMIC
COSN1452778 2827 COSMIC
COSN29211460 2969 COSMIC
COSN6465113 3476 COSMIC
COSN28201116 3784 COSMIC
COSN27406739 3786 COSMIC
COSN27562888 3786 COSMIC
COSN1107456 3864 COSMIC
COSN27307418 3865 COSMIC
COSN1452777 4007 COSMIC
COSN1107455 4028 COSMIC
COSN29295160 4242 COSMIC
COSN4751526 4336 COSMIC
COSN20094926 4620 COSMIC
COSN27226957 4621 COSMIC
COSN20090259 4638 COSMIC
COSN26201109 4735 COSMIC
COSN1452776 4816 COSMIC
COSN15334175 5350 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1297852123 1 dbSNP
rs761129272 5 dbSNP
rs1393050577 8 dbSNP
rs1370331044 10 dbSNP
rs772916171 12 dbSNP
rs1362569471 13 dbSNP
rs1433987498 18 dbSNP
rs1270484361 19 dbSNP
rs1301063307 20 dbSNP
rs200580065 24 dbSNP
rs1365791437 37 dbSNP
rs896229256 38 dbSNP
rs554394152 43 dbSNP
rs1222611304 52 dbSNP
rs1335433870 55 dbSNP
rs1214374935 73 dbSNP
rs558725204 75 dbSNP
rs1451352773 77 dbSNP
rs1463658896 78 dbSNP
rs1192766946 80 dbSNP
rs1243009466 81 dbSNP
rs1290049292 84 dbSNP
rs1231181436 88 dbSNP
rs1343573336 89 dbSNP
rs1052653976 90 dbSNP
rs1021610403 100 dbSNP
rs1043594264 101 dbSNP
rs903537342 101 dbSNP
rs942638287 101 dbSNP
rs911160378 105 dbSNP
rs1050933090 107 dbSNP
rs1359402508 108 dbSNP
rs933849893 112 dbSNP
rs1355995647 115 dbSNP
rs1294876322 121 dbSNP
rs1235067241 129 dbSNP
rs1436795342 131 dbSNP
rs1349024584 153 dbSNP
rs539010140 164 dbSNP
rs570081375 166 dbSNP
rs1431543174 167 dbSNP
rs1285181780 175 dbSNP
rs879930195 177 dbSNP
rs962012632 180 dbSNP
rs1257344115 181 dbSNP
rs1475779760 182 dbSNP
rs879090101 188 dbSNP
rs1409060671 196 dbSNP
rs1452463765 202 dbSNP
rs1158680588 216 dbSNP
rs1386652838 224 dbSNP
rs1412458965 235 dbSNP
rs1168010871 245 dbSNP
rs1426757494 252 dbSNP
rs1427391970 254 dbSNP
rs1416492238 260 dbSNP
rs1286416062 264 dbSNP
rs1335143204 274 dbSNP
rs984815461 295 dbSNP
rs969617059 302 dbSNP
rs1198947456 304 dbSNP
rs556262868 315 dbSNP
rs1024342643 316 dbSNP
rs992337482 323 dbSNP
rs961163504 326 dbSNP
rs1419053051 327 dbSNP
rs1365104058 328 dbSNP
rs1476804366 336 dbSNP
rs536310018 337 dbSNP
rs1172653077 342 dbSNP
rs1395414897 346 dbSNP
rs1436323450 351 dbSNP
rs1030716453 357 dbSNP
rs140414534 375 dbSNP
rs1064385 384 dbSNP
rs1203062765 393 dbSNP
rs1305219924 394 dbSNP
rs183536126 395 dbSNP
rs1021897463 396 dbSNP
rs1232299054 397 dbSNP
rs1344542645 417 dbSNP
rs533888999 432 dbSNP
rs1281104006 433 dbSNP
rs1302985579 439 dbSNP
rs1411479900 441 dbSNP
rs1348915493 447 dbSNP
rs191051036 456 dbSNP
rs1307291026 460 dbSNP
rs1480589360 462 dbSNP
rs187263742 463 dbSNP
rs35073663 465 dbSNP
rs1051490438 482 dbSNP
rs35386444 499 dbSNP
rs1192511736 502 dbSNP
rs1395289254 509 dbSNP
rs1455354916 519 dbSNP
rs1360906826 520 dbSNP
rs1166483292 521 dbSNP
rs1176952055 523 dbSNP
rs933798201 525 dbSNP
rs1427512836 536 dbSNP
rs1184757948 542 dbSNP
rs183499542 549 dbSNP
rs1325361537 565 dbSNP
rs1371983365 566 dbSNP
rs896995574 569 dbSNP
rs1228744402 573 dbSNP
rs1251589852 573 dbSNP
rs1253566062 573 dbSNP
rs1293796514 573 dbSNP
rs1333401782 581 dbSNP
rs1175928699 586 dbSNP
rs1212509517 586 dbSNP
rs1484535169 591 dbSNP
rs1257233127 592 dbSNP
rs1036427960 593 dbSNP
rs940738990 594 dbSNP
rs562434997 599 dbSNP
rs1210253778 603 dbSNP
rs909327162 618 dbSNP
rs1195108313 619 dbSNP
rs1366621075 620 dbSNP
rs1460907836 626 dbSNP
rs1164297021 631 dbSNP
rs984783016 633 dbSNP
rs948075990 644 dbSNP
rs916799513 647 dbSNP
rs992828089 653 dbSNP
rs1328041091 668 dbSNP
rs549109492 687 dbSNP
rs1383106246 688 dbSNP
rs960876457 693 dbSNP
rs1233218572 694 dbSNP
rs1031605133 698 dbSNP
rs1336329969 702 dbSNP
rs1350808315 706 dbSNP
rs978253123 707 dbSNP
rs1259745645 711 dbSNP
rs1486017226 717 dbSNP
rs1188030830 721 dbSNP
rs967756994 725 dbSNP
rs1474800956 739 dbSNP
rs528949538 747 dbSNP
rs1188585091 753 dbSNP
rs561513737 770 dbSNP
rs1418613895 773 dbSNP
rs147845820 776 dbSNP
rs889449674 778 dbSNP
rs572687259 779 dbSNP
rs563984831 786 dbSNP
rs1290930004 787 dbSNP
rs545881739 788 dbSNP
rs998532172 801 dbSNP
rs1414647619 804 dbSNP
rs144439550 809 dbSNP
rs1037260955 819 dbSNP
rs941210089 820 dbSNP
rs575273909 825 dbSNP
rs1049177542 826 dbSNP
rs576042371 829 dbSNP
rs191788527 830 dbSNP
rs766587629 840 dbSNP
rs758802651 857 dbSNP
rs948002023 863 dbSNP
rs186485970 877 dbSNP
rs1056694687 883 dbSNP
rs1181810589 884 dbSNP
rs1407352498 885 dbSNP
rs1419830774 892 dbSNP
rs573791405 895 dbSNP
rs553724153 896 dbSNP
rs1434460662 900 dbSNP
rs1313926387 901 dbSNP
rs1210142373 904 dbSNP
rs1440737203 923 dbSNP
rs1297043711 926 dbSNP
rs1373447062 927 dbSNP
rs760614021 934 dbSNP
rs924244096 935 dbSNP
rs978220611 939 dbSNP
rs181196804 941 dbSNP
rs1234731204 944 dbSNP
rs1435937505 945 dbSNP
rs968225586 952 dbSNP
rs1232321858 954 dbSNP
rs1180636873 959 dbSNP
rs1251354660 961 dbSNP
rs1454045826 962 dbSNP
rs914950710 965 dbSNP
rs750910416 968 dbSNP
rs1427705872 969 dbSNP
rs1236663394 970 dbSNP
rs1323410130 971 dbSNP
rs571478643 974 dbSNP
rs551675820 976 dbSNP
rs953716259 978 dbSNP
rs1441184547 981 dbSNP
rs1029725933 982 dbSNP
rs765876044 994 dbSNP
rs762449898 1012 dbSNP
rs1015560071 1019 dbSNP
rs1005351089 1020 dbSNP
rs888288815 1024 dbSNP
rs1271425029 1025 dbSNP
rs775114747 1026 dbSNP
rs1248772004 1028 dbSNP
rs895255269 1030 dbSNP
rs537710297 1032 dbSNP
rs939400015 1042 dbSNP
rs1162088805 1048 dbSNP
rs924183911 1049 dbSNP
rs1042620009 1050 dbSNP
rs1325150374 1055 dbSNP
rs1324359271 1061 dbSNP
rs568874105 1067 dbSNP
rs1429747563 1069 dbSNP
rs1270615138 1070 dbSNP
rs946850154 1071 dbSNP
rs915421635 1086 dbSNP
rs1291455424 1087 dbSNP
rs769827685 1091 dbSNP
rs1164604319 1099 dbSNP
rs1443341657 1100 dbSNP
rs1292255392 1108 dbSNP
rs536216710 1115 dbSNP
rs1190017623 1122 dbSNP
rs1215514417 1122 dbSNP
rs548997085 1125 dbSNP
rs1465042610 1146 dbSNP
rs1479054731 1148 dbSNP
rs1260668181 1152 dbSNP
rs372367004 1154 dbSNP
rs1416471439 1158 dbSNP
rs188320468 1171 dbSNP
rs1164549642 1173 dbSNP
rs767190509 1196 dbSNP
rs1399824685 1200 dbSNP
rs1265816810 1204 dbSNP
rs1245089198 1205 dbSNP
rs560276082 1215 dbSNP
rs1318650032 1216 dbSNP
rs185108676 1224 dbSNP
rs1479531376 1227 dbSNP
rs1412806334 1232 dbSNP
rs1292631053 1233 dbSNP
rs1357270806 1238 dbSNP
rs1356056516 1245 dbSNP
rs140653998 1246 dbSNP
rs1286097540 1247 dbSNP
rs1229285733 1248 dbSNP
rs1348725118 1248 dbSNP
rs1489491932 1253 dbSNP
rs201123508 1253 dbSNP
rs1209225423 1258 dbSNP
rs1325950795 1268 dbSNP
rs527910160 1271 dbSNP
rs1486320307 1273 dbSNP
rs961076009 1278 dbSNP
rs1015486608 1286 dbSNP
rs1469259772 1288 dbSNP
rs868391433 1289 dbSNP
rs180672949 1294 dbSNP
rs1388743452 1301 dbSNP
rs1381894961 1303 dbSNP
rs774054300 1305 dbSNP
rs1302984092 1306 dbSNP
rs1375987413 1310 dbSNP
rs1397718763 1319 dbSNP
rs1022786592 1321 dbSNP
rs1423285222 1324 dbSNP
rs1012781232 1325 dbSNP
rs1310219436 1328 dbSNP
rs895211556 1336 dbSNP
rs1232541233 1341 dbSNP
rs1056589985 1342 dbSNP
rs1169912709 1345 dbSNP
rs1003913156 1350 dbSNP
rs769419001 1363 dbSNP
rs902527424 1373 dbSNP
rs1042588378 1374 dbSNP
rs1239595080 1376 dbSNP
rs545689927 1384 dbSNP
rs1372033149 1385 dbSNP
rs1452258253 1385 dbSNP
rs1190496042 1398 dbSNP
rs1434561971 1400 dbSNP
rs946953415 1401 dbSNP
rs190465041 1406 dbSNP
rs1395733318 1407 dbSNP
rs894092921 1407 dbSNP
rs1390865767 1411 dbSNP
rs1332191798 1418 dbSNP
rs1379394419 1419 dbSNP
rs1221558659 1422 dbSNP
rs547243029 1425 dbSNP
rs1303064321 1427 dbSNP
rs1332067624 1437 dbSNP
rs1049878044 1444 dbSNP
rs1250095887 1446 dbSNP
rs542034977 1449 dbSNP
rs1276626521 1454 dbSNP
rs1198713349 1455 dbSNP
rs1259433279 1458 dbSNP
rs1466817070 1464 dbSNP
rs932876998 1473 dbSNP
rs1434652863 1476 dbSNP
rs1205819902 1481 dbSNP
rs922306462 1483 dbSNP
rs976538202 1487 dbSNP
rs1338747842 1493 dbSNP
rs939654212 1494 dbSNP
rs1235677422 1496 dbSNP
rs1402568271 1509 dbSNP
rs908226220 1512 dbSNP
rs1325517029 1516 dbSNP
rs1331966723 1521 dbSNP
rs983811808 1522 dbSNP
rs1293952842 1530 dbSNP
rs1403540077 1532 dbSNP
rs1352741126 1534 dbSNP
rs1279483495 1538 dbSNP
rs1332068629 1549 dbSNP
rs1212563707 1550 dbSNP
rs1265638884 1556 dbSNP
rs1203151177 1560 dbSNP
rs778206671 1560 dbSNP
rs1260787620 1572 dbSNP
rs1022921066 1576 dbSNP
rs991728826 1581 dbSNP
rs1425824045 1582 dbSNP
rs1474250304 1584 dbSNP
rs1164367465 1585 dbSNP
rs1165712507 1586 dbSNP
rs1350673367 1594 dbSNP
rs1459701549 1599 dbSNP
rs1467259915 1601 dbSNP
rs1429608571 1602 dbSNP
rs1287425877 1604 dbSNP
rs959900571 1608 dbSNP
rs1401099676 1626 dbSNP
rs1300550105 1627 dbSNP
rs1035479332 1631 dbSNP
rs770584979 1646 dbSNP
rs1198396534 1647 dbSNP
rs1479308885 1655 dbSNP
rs1323075190 1659 dbSNP
rs1236452597 1661 dbSNP
rs1259881771 1675 dbSNP
rs1003642083 1676 dbSNP
rs902496250 1681 dbSNP
rs1255294302 1682 dbSNP
rs1020900224 1685 dbSNP
rs879348163 1687 dbSNP
rs562588733 1696 dbSNP
rs1414642885 1703 dbSNP
rs1010898360 1704 dbSNP
rs1157236364 1706 dbSNP
rs1310055263 1714 dbSNP
rs1437222228 1717 dbSNP
rs1420665815 1721 dbSNP
rs1270965837 1726 dbSNP
rs749141928 1731 dbSNP
rs894060176 1733 dbSNP
rs1374167479 1736 dbSNP
rs1414709943 1738 dbSNP
rs1202289360 1739 dbSNP
rs1380742445 1739 dbSNP
rs1389286843 1754 dbSNP
rs528212845 1761 dbSNP
rs185537811 1763 dbSNP
rs901355236 1765 dbSNP
rs1278009218 1766 dbSNP
rs1443288688 1767 dbSNP
rs1346978747 1771 dbSNP
rs1221948101 1772 dbSNP
rs1352645191 1775 dbSNP
rs1289389883 1777 dbSNP
rs1238083452 1778 dbSNP
rs1041168546 1790 dbSNP
rs1175605017 1791 dbSNP
rs1237784236 1803 dbSNP
rs1440616479 1806 dbSNP
rs140525881 1807 dbSNP
rs1334586420 1808 dbSNP
rs773035057 1809 dbSNP
rs1326246355 1817 dbSNP
rs769701798 1836 dbSNP
rs1361452558 1838 dbSNP
rs1460006664 1846 dbSNP
rs983779399 1850 dbSNP
rs1377181494 1851 dbSNP
rs1406208998 1858 dbSNP
rs1448540103 1859 dbSNP
rs931004679 1862 dbSNP
rs915789676 1863 dbSNP
rs1175179294 1865 dbSNP
rs1467912087 1867 dbSNP
rs192970679 1868 dbSNP
rs373786536 1875 dbSNP
rs1158997785 1885 dbSNP
rs1280622531 1890 dbSNP
rs35050943 1891 dbSNP
rs1202516604 1909 dbSNP
rs960112383 1910 dbSNP
rs1458337106 1914 dbSNP
rs1180774518 1919 dbSNP
rs114717127 1923 dbSNP
rs977689854 1926 dbSNP
rs966760619 1928 dbSNP
rs1021035901 1929 dbSNP
rs574766680 1932 dbSNP
rs1169263273 1933 dbSNP
rs577777651 1934 dbSNP
rs1028965920 1938 dbSNP
rs997126284 1949 dbSNP
rs147605192 1957 dbSNP
rs748141848 1958 dbSNP
rs553258045 1960 dbSNP
rs1004418870 1966 dbSNP
rs886853320 1966 dbSNP
rs755090686 1968 dbSNP
rs1277587557 1973 dbSNP
rs1318737118 1973 dbSNP
rs1200649351 1974 dbSNP
rs538191242 1976 dbSNP
rs1451309422 1977 dbSNP
rs1222765883 1983 dbSNP
rs868031756 2001 dbSNP
rs1248826720 2008 dbSNP
rs1048175229 2009 dbSNP
rs569164703 2015 dbSNP
rs190151913 2020 dbSNP
rs1349138944 2021 dbSNP
rs747144676 2024 dbSNP
rs1419148562 2027 dbSNP
rs1056091548 2028 dbSNP
rs1405595402 2033 dbSNP
rs938592012 2047 dbSNP
rs780343618 2058 dbSNP
rs879460406 2062 dbSNP
rs1298700639 2068 dbSNP
rs184333375 2070 dbSNP
rs977225013 2073 dbSNP
rs1382808997 2079 dbSNP
rs967188879 2081 dbSNP
rs913955705 2090 dbSNP
rs1229117499 2091 dbSNP
rs1292410296 2092 dbSNP
rs1335562977 2095 dbSNP
rs1216402722 2104 dbSNP
rs1264513977 2106 dbSNP
rs1489594782 2112 dbSNP
rs1185063637 2115 dbSNP
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rs1164665478 2118 dbSNP
rs1418845574 2119 dbSNP
rs1159096304 2121 dbSNP
rs1362377614 2131 dbSNP
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rs1332212438 2137 dbSNP
rs751362773 2137 dbSNP
rs796785160 2138 dbSNP
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rs778372286 3000 dbSNP
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rs1359477560 4618 dbSNP
rs1007693430 4619 dbSNP
rs201198013 4620 dbSNP
rs1226229309 4621 dbSNP
rs1363721079 4622 dbSNP
rs900176291 4622 dbSNP
rs1264979811 4632 dbSNP
rs1270537289 4637 dbSNP
rs1211812080 4638 dbSNP
rs1259931472 4638 dbSNP
rs1357182239 4638 dbSNP
rs1368496153 4638 dbSNP
rs34329786 4638 dbSNP
rs560490479 4638 dbSNP
rs879079303 4638 dbSNP
rs1429693873 4642 dbSNP
rs1459011996 4644 dbSNP
rs1338149891 4668 dbSNP
rs1156385771 4672 dbSNP
rs554267737 4693 dbSNP
rs1405505895 4694 dbSNP
rs1380451929 4696 dbSNP
rs1038660446 4704 dbSNP
rs936435891 4714 dbSNP
rs541088630 4721 dbSNP
rs551921885 4724 dbSNP
rs1042101195 4726 dbSNP
rs1247091534 4737 dbSNP
rs1162814075 4740 dbSNP
rs1259182716 4744 dbSNP
rs1060083 4747 dbSNP
rs1060085 4749 dbSNP
rs1328815463 4750 dbSNP
rs1411859036 4752 dbSNP
rs1270461793 4755 dbSNP
rs1420560104 4762 dbSNP
rs1167565262 4764 dbSNP
rs945248621 4767 dbSNP
rs776390192 4768 dbSNP
rs146189844 4770 dbSNP
rs926519842 4777 dbSNP
rs1179128251 4778 dbSNP
rs1045393721 4785 dbSNP
rs1490341810 4794 dbSNP
rs959279191 4798 dbSNP
rs927303382 4801 dbSNP
rs768605933 4803 dbSNP
rs1403571097 4815 dbSNP
rs949192039 4823 dbSNP
rs980071572 4826 dbSNP
rs79265837 4834 dbSNP
rs917732985 4836 dbSNP
rs79139810 4843 dbSNP
rs1308762355 4845 dbSNP
rs963361926 4847 dbSNP
rs1016382061 4854 dbSNP
rs1305018563 4854 dbSNP
rs200316646 4868 dbSNP
rs1229200837 4872 dbSNP
rs1290464651 4873 dbSNP
rs1321774861 4874 dbSNP
rs1209858616 4877 dbSNP
rs1004969732 4878 dbSNP
rs950985218 4883 dbSNP
rs1030467856 4885 dbSNP
rs998180669 4887 dbSNP
rs539794309 4888 dbSNP
rs1472647705 4891 dbSNP
rs190961199 4891 dbSNP
rs1432383383 4893 dbSNP
rs1176599236 4894 dbSNP
rs1360803262 4895 dbSNP
rs1285009751 4897 dbSNP
rs1224010126 4904 dbSNP
rs760577662 4907 dbSNP
rs1369972351 4908 dbSNP
rs557422463 4911 dbSNP
rs978746562 4912 dbSNP
rs775625717 4914 dbSNP
rs1343940094 4918 dbSNP
rs1000508500 4923 dbSNP
rs142227487 4924 dbSNP
rs568433968 4928 dbSNP
rs986808473 4931 dbSNP
rs1274570703 4935 dbSNP
rs1042153322 4943 dbSNP
rs772105930 4947 dbSNP
rs548406844 4948 dbSNP
rs1487981582 4951 dbSNP
rs1191522454 4954 dbSNP
rs147615002 4956 dbSNP
rs1426540847 4957 dbSNP
rs1167819021 4963 dbSNP
rs1390712750 4964 dbSNP
rs1056276019 4972 dbSNP
rs937940017 4973 dbSNP
rs753436320 4974 dbSNP
rs1435980417 4978 dbSNP
rs1294368028 4979 dbSNP
rs1464311097 4979 dbSNP
rs926590395 4980 dbSNP
rs149930968 4982 dbSNP
rs1177688517 4990 dbSNP
rs1229948432 4991 dbSNP
rs963413681 4992 dbSNP
rs1289006067 4997 dbSNP
rs909206377 5003 dbSNP
rs552340274 5006 dbSNP
rs747824142 5007 dbSNP
rs983545995 5009 dbSNP
rs187322178 5013 dbSNP
rs1481305111 5024 dbSNP
rs1343844653 5027 dbSNP
rs949293382 5029 dbSNP
rs1219797978 5034 dbSNP
rs766334449 5037 dbSNP
rs563221204 5043 dbSNP
rs1052219328 5044 dbSNP
rs976304229 5052 dbSNP
rs1411661056 5059 dbSNP
rs1264763053 5064 dbSNP
rs1435013399 5066 dbSNP
rs1165666166 5068 dbSNP
rs1223948231 5077 dbSNP
rs1311400529 5078 dbSNP
rs139116527 5079 dbSNP
rs1225418314 5080 dbSNP
rs1455964570 5083 dbSNP
rs979269379 5085 dbSNP
rs182385253 5089 dbSNP
rs1437849504 5094 dbSNP
rs1313581231 5099 dbSNP
rs1279081986 5101 dbSNP
rs779287976 5107 dbSNP
rs560901833 5108 dbSNP
rs1291568790 5111 dbSNP
rs1314820475 5112 dbSNP
rs778481344 5117 dbSNP
rs190146542 5122 dbSNP
rs1466106793 5126 dbSNP
rs1408651445 5127 dbSNP
rs1181620642 5130 dbSNP
rs1236844344 5131 dbSNP
rs1472507286 5132 dbSNP
rs572107716 5134 dbSNP
rs903535944 5141 dbSNP
rs754654589 5144 dbSNP
rs1020536913 5157 dbSNP
rs1182578541 5158 dbSNP
rs1337655643 5158 dbSNP
rs910524293 5170 dbSNP
rs1009749465 5179 dbSNP
rs1346223691 5185 dbSNP
rs1389777898 5187 dbSNP
rs986158047 5188 dbSNP
rs896207827 5192 dbSNP
rs1359159472 5193 dbSNP
rs1448102374 5193 dbSNP
rs1285495245 5201 dbSNP
rs1056604488 5206 dbSNP
rs553328263 5207 dbSNP
rs546360988 5218 dbSNP
rs1408032256 5223 dbSNP
rs749642941 5230 dbSNP
rs972184815 5234 dbSNP
rs1330869307 5238 dbSNP
rs767218842 5241 dbSNP
rs1201608313 5246 dbSNP
rs941226357 5250 dbSNP
rs1442987000 5252 dbSNP
rs1244531786 5259 dbSNP
rs1210870971 5263 dbSNP
rs1239242069 5277 dbSNP
rs376345394 5285 dbSNP
rs1181657084 5291 dbSNP
rs1412980744 5292 dbSNP
rs909216131 5297 dbSNP
rs1006400131 5312 dbSNP
rs1425051485 5324 dbSNP
rs1415584133 5327 dbSNP
rs983429914 5331 dbSNP
rs1336747493 5333 dbSNP
rs929283221 5343 dbSNP
rs796354750 5345 dbSNP
rs1308260985 5351 dbSNP
rs1230765351 5358 dbSNP
rs1482780136 5362 dbSNP
rs976568730 5366 dbSNP
rs1023716297 5367 dbSNP
rs1254081192 5386 dbSNP
rs1482075876 5387 dbSNP
rs1204607586 5393 dbSNP
rs1252792046 5396 dbSNP
rs184564054 5398 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' aauuuggAGAUGAUUCAAGGGu 5'
                 |:||  |||||||| 
Target 5' ------aUUUA-GAAGUUCCCc 3'
 		1 - 15
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_015640 | 3UTR | UCCCCCAAUUACAAACUGGUUUUAAAUAUUGGACAUACUGGUUUUAAUACCUGCUUUGCAUAUUCACACAUGGUCAACUGGGACAUGUUAAACUUUGAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_015640 | 3UTR | UAGAAGUUCCCCCAAUUACAAACUGGUUUUAAAUAUUGGACAUACUGGUUUUAAUACCUGCUUUGCAUAUUCACACAUGGUCAACUGGGACAUGUUAAACUUUGAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000370994.4 | 3UTR | AUUUAGAAGUUCCCCCAAUUACAAACUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
51 hsa-miR-4471 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT082398 HNRNPUL1 heterogeneous nuclear ribonucleoprotein U like 1 2 4
MIRT295740 KIF3B kinesin family member 3B 2 2
MIRT453005 CCDC115 coiled-coil domain containing 115 2 16
MIRT456180 ZDHHC6 zinc finger DHHC-type containing 6 2 2
MIRT457455 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT464992 TUBB2A tubulin beta 2A class IIa 2 10
MIRT467615 SLC7A5 solute carrier family 7 member 5 2 2
MIRT468602 SERBP1 SERPINE1 mRNA binding protein 1 2 2
MIRT470070 PTGES2 prostaglandin E synthase 2 2 2
MIRT470562 POU2F1 POU class 2 homeobox 1 2 2
MIRT472274 NFIB nuclear factor I B 2 2
MIRT473471 MCFD2 multiple coagulation factor deficiency 2 2 2
MIRT477892 DVL3 dishevelled segment polarity protein 3 2 4
MIRT486345 TACC2 transforming acidic coiled-coil containing protein 2 2 6
MIRT487190 NFASC neurofascin 2 4
MIRT488690 NAT9 N-acetyltransferase 9 (putative) 2 2
MIRT492106 TAB2 TGF-beta activated kinase 1/MAP3K7 binding protein 2 2 2
MIRT495216 DSCR3 DSCR3 arrestin fold containing 2 2
MIRT495666 TUBAL3 tubulin alpha like 3 2 2
MIRT501833 NCOA2 nuclear receptor coactivator 2 2 2
MIRT507147 GATAD2B GATA zinc finger domain containing 2B 2 4
MIRT508522 GDI1 GDP dissociation inhibitor 1 2 2
MIRT513839 KCTD15 potassium channel tetramerization domain containing 15 2 4
MIRT513883 GTF2IRD2 GTF2I repeat domain containing 2 2 4
MIRT527336 COL18A1 collagen type XVIII alpha 1 chain 2 2
MIRT537390 FGD6 FYVE, RhoGEF and PH domain containing 6 2 2
MIRT538879 BTBD1 BTB domain containing 1 2 2
MIRT539044 ATXN1L ataxin 1 like 2 4
MIRT554387 SERTAD3 SERTA domain containing 3 2 2
MIRT554936 RAP1A RAP1A, member of RAS oncogene family 2 2
MIRT567517 FOXC1 forkhead box C1 2 2
MIRT573598 CERS1 ceramide synthase 1 2 2
MIRT642417 CILP2 cartilage intermediate layer protein 2 2 2
MIRT643296 PHKG1 phosphorylase kinase catalytic subunit gamma 1 2 2
MIRT652883 SYVN1 synoviolin 1 2 2
MIRT657928 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT660302 BHLHE40 basic helix-loop-helix family member e40 2 2
MIRT664717 SLC7A6OS solute carrier family 7 member 6 opposite strand 2 2
MIRT698889 SPTBN2 spectrin beta, non-erythrocytic 2 2 2
MIRT702007 MIDN midnolin 2 2
MIRT706808 APOL4 apolipoprotein L4 2 2
MIRT708330 DERL2 derlin 2 2 2
MIRT709885 ERCC6L ERCC excision repair 6 like, spindle assembly checkpoint helicase 2 2
MIRT711887 INSIG2 insulin induced gene 2 2 2
MIRT711956 CYP27B1 cytochrome P450 family 27 subfamily B member 1 2 2
MIRT715081 PRKAB2 protein kinase AMP-activated non-catalytic subunit beta 2 2 2
MIRT716218 TRIM17 tripartite motif containing 17 2 2
MIRT718124 CHST4 carbohydrate sulfotransferase 4 2 2
MIRT718725 VWA9 integrator complex subunit 14 2 2
MIRT719450 APBA1 amyloid beta precursor protein binding family A member 1 2 2
MIRT725666 ABI2 abl interactor 2 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4471 Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-4471 Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-miR-4471 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

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