pre-miRNA Information
pre-miRNA hsa-mir-3160-1   
Genomic Coordinates chr11: 46451805 - 46451889
Description Homo sapiens miR-3160-1 stem-loop
Comment None
RNA Secondary Structure
pre-miRNA hsa-mir-3160-2   
Genomic Coordinates chr11: 46451807 - 46451887
Description Homo sapiens miR-3160-2 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3160-3p
Sequence 54| AGAGCUGAGACUAGAAAGCCCA |75
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN30582333 1 COSMIC
COSN1535547 3 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1396368683 1 dbSNP
rs1162409303 2 dbSNP
rs1404378453 12 dbSNP
rs1171960732 14 dbSNP
rs1324633375 16 dbSNP
rs1187765019 16 dbSNP
rs1300058326 19 dbSNP
rs1432898407 21 dbSNP
rs1011279103 22 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol RNPS1   
Synonyms E5.1
Description RNA binding protein with serine rich domain 1
Transcript NM_006711   
Other Transcripts NM_080594   
Expression
Putative miRNA Targets on RNPS1
3'UTR of RNPS1
(miRNA target sites are highlighted)
>RNPS1|NM_006711|3'UTR
   1 ACAGGCCACTGAAGCTCTCGCCCCTGTAACTTATACCCCACCCAGCTCAGTTTTGTCACTTTTCTAGCCAAAGGAAGACC
  81 AGTAGGAAAGCAAACCCTTGACTCTGGCAGGATTTGCAGGCAGCAGGCAGCACCCCTCTGCCAGCCGGGCCCCGGCTGCA
 161 GAAGTGCTGTTGGTTTGGATGCTGTGTGCCTGTCAAGATTCCCTCCGGTTTTCTGGCTAGAAAGCTCATCCGTTTCCGGT
 241 TTCTAAGAGTCAGTTCAGTGGCAGAGCCACCAGGGAAAAGTGAGGCTCTTGGGGGTGGTTTGACCCTGCTTACCTGGGAG
 321 CACACTTTTCCCTTCCCCGATGACCTGGGATGGTGGCCAGGCCGTGCCCTTGCTGTTGCTGGGCAGTGTCCTTTTGGAAA
 401 GGGAGCTGCCCCAGGCTTTAGTGCAGCTGCCAACCCTGTTAGGCCTGGCCTCTCGAGGCCTCTTCTGACCTCAAGGGTCA
 481 CACCCCCTCAAAGATCCTCTCACCCATGGTAGTTGCTGCTCGTGGTTCTGTCTGTCCGTGCACCGATGCACACACCGCAC
 561 CCCACCACTGTACTCTGAAATTGGCGAGTGAGTGGAGAGCCAGCTCTGCGGAGTCATCACGCAGCCATGGTTGTGCCTGC
 641 CGTTCATGGTGGTCTTTCAGGTTATCTTGGCAACATGTACATTGCTTTTATTTTTTTTCTTTTTTGCTTTCATTGTACAG
 721 TCAGTACTATAAAATTTCTCTTTTGAGTTTTATACCTTTGTAGCATTTTAGATGACATTGTGTTTGTACTTTGTTGTGTA
 801 GAGTGGAAGAATTGTGTTGAATAAACCCAAGATCGGAATGCAAATCTAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' accCGAAAGA-UCAGAGUCGAGa 5'
             | ||||| ||  ||||:|| 
Target 5' tccGGTTTCTAAGAGTCAGTTCa 3'
235 - 257 147.00 -13.10
2
miRNA  3' acccgaaagaucagaGUCGAGa 5'
                         |||||| 
Target 5' aacttataccccaccCAGCTCa 3'
28 - 49 120.00 -7.80
3
miRNA  3' acccgaaagaucagaGUCGAGa 5'
                         |||||| 
Target 5' gagtgagtggagagcCAGCTCt 3'
586 - 607 120.00 -10.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSM9475087 1 COSMIC
COSM7576376 9 COSMIC
COSM8929735 85 COSMIC
COSM5786832 121 COSMIC
COSM7254996 181 COSMIC
COSN30740239 258 COSMIC
COSN6081828 338 COSMIC
COSN6644868 469 COSMIC
COSN26670784 679 COSMIC
COSN26648808 690 COSMIC
COSN31484271 745 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1490417004 2 dbSNP
rs1248031632 3 dbSNP
rs1219111209 5 dbSNP
rs1484906124 7 dbSNP
rs1450812104 8 dbSNP
rs1284940072 9 dbSNP
rs372406498 15 dbSNP
rs1327212538 16 dbSNP
rs375040356 19 dbSNP
rs1027120515 20 dbSNP
rs372051632 23 dbSNP
rs879855831 29 dbSNP
rs555419755 31 dbSNP
rs879693161 31 dbSNP
rs201744566 32 dbSNP
rs1346147981 33 dbSNP
rs777134432 34 dbSNP
rs1456086908 35 dbSNP
rs1388501256 36 dbSNP
rs1157783374 37 dbSNP
rs1480437514 39 dbSNP
rs1426909041 41 dbSNP
rs753890351 42 dbSNP
rs1477601881 53 dbSNP
rs1242455899 54 dbSNP
rs889496451 55 dbSNP
rs1463507733 58 dbSNP
rs764107042 59 dbSNP
rs1204393489 65 dbSNP
rs566742988 70 dbSNP
rs775432437 71 dbSNP
rs1327165783 74 dbSNP
rs933702937 77 dbSNP
rs1466619375 79 dbSNP
rs574270988 80 dbSNP
rs771729478 82 dbSNP
rs1433270453 83 dbSNP
rs1388549163 90 dbSNP
rs754018724 90 dbSNP
rs1483752950 91 dbSNP
rs1337955873 93 dbSNP
rs1183247938 95 dbSNP
rs759258782 96 dbSNP
rs1472013618 99 dbSNP
rs1360365488 100 dbSNP
rs977866445 102 dbSNP
rs1173568099 104 dbSNP
rs945230729 105 dbSNP
rs773854323 107 dbSNP
rs1190290973 108 dbSNP
rs200319672 109 dbSNP
rs1247416474 114 dbSNP
rs989440277 119 dbSNP
rs1359540382 125 dbSNP
rs959628194 126 dbSNP
rs547317056 127 dbSNP
rs11556070 128 dbSNP
rs1209463288 130 dbSNP
rs1308329064 133 dbSNP
rs781708116 134 dbSNP
rs563881893 135 dbSNP
rs1289030108 136 dbSNP
rs1226731234 138 dbSNP
rs771571138 141 dbSNP
rs1316412002 142 dbSNP
rs769155071 146 dbSNP
rs1377571060 147 dbSNP
rs1052066949 149 dbSNP
rs368231329 150 dbSNP
rs780488902 151 dbSNP
rs1170091683 152 dbSNP
rs11556071 153 dbSNP
rs1416016985 154 dbSNP
rs1389298583 158 dbSNP
rs1164179126 159 dbSNP
rs747462407 160 dbSNP
rs34001675 177 dbSNP
rs1253940052 178 dbSNP
rs1181354347 182 dbSNP
rs778996420 184 dbSNP
rs1254312533 189 dbSNP
rs777365467 192 dbSNP
rs757467492 193 dbSNP
rs754300687 194 dbSNP
rs1341944920 196 dbSNP
rs1016922212 197 dbSNP
rs1461485970 201 dbSNP
rs1292994969 202 dbSNP
rs1247378524 203 dbSNP
rs921789935 205 dbSNP
rs551158670 206 dbSNP
rs764205207 207 dbSNP
rs889371149 213 dbSNP
rs944640589 213 dbSNP
rs1449440010 214 dbSNP
rs1395013343 216 dbSNP
rs997820316 219 dbSNP
rs140371928 221 dbSNP
rs866600135 224 dbSNP
rs900908112 225 dbSNP
rs1369515655 228 dbSNP
rs375388999 230 dbSNP
rs561792684 231 dbSNP
rs912537230 232 dbSNP
rs982787528 233 dbSNP
rs1163967854 236 dbSNP
rs771443629 237 dbSNP
rs1027068180 238 dbSNP
rs1331716926 239 dbSNP
rs1180054360 243 dbSNP
rs1482864682 245 dbSNP
rs1269798142 251 dbSNP
rs547958616 252 dbSNP
rs1380557468 253 dbSNP
rs1487707817 257 dbSNP
rs543641945 262 dbSNP
rs1159267344 266 dbSNP
rs1353790434 269 dbSNP
rs1455790822 272 dbSNP
rs779447999 281 dbSNP
rs969567699 287 dbSNP
rs1024245949 292 dbSNP
rs528138388 295 dbSNP
rs1206752738 313 dbSNP
rs1282016893 321 dbSNP
rs1247264859 329 dbSNP
rs559043063 332 dbSNP
rs1190251482 337 dbSNP
rs896752466 338 dbSNP
rs1030586148 339 dbSNP
rs1470441270 342 dbSNP
rs1162841739 344 dbSNP
rs999146327 345 dbSNP
rs1463019421 356 dbSNP
rs1319216636 360 dbSNP
rs903565311 363 dbSNP
rs546089725 364 dbSNP
rs1403334709 365 dbSNP
rs1300229355 369 dbSNP
rs1339032711 377 dbSNP
rs1243636009 383 dbSNP
rs972178163 387 dbSNP
rs1294452240 391 dbSNP
rs1226032151 401 dbSNP
rs931747862 409 dbSNP
rs963538043 416 dbSNP
rs778479326 422 dbSNP
rs1253847636 430 dbSNP
rs1441577108 430 dbSNP
rs1187115207 431 dbSNP
rs900311587 432 dbSNP
rs754609726 433 dbSNP
rs1476262228 436 dbSNP
rs1157005871 449 dbSNP
rs1458257189 450 dbSNP
rs531525801 454 dbSNP
rs1400530616 455 dbSNP
rs1395738096 464 dbSNP
rs10721 469 dbSNP
rs557785918 470 dbSNP
rs1456252624 474 dbSNP
rs1412057818 481 dbSNP
rs1287197029 482 dbSNP
rs1160999768 493 dbSNP
rs1804277 497 dbSNP
rs1254106319 498 dbSNP
rs11537851 499 dbSNP
rs1344121668 508 dbSNP
rs1804278 511 dbSNP
rs1257185822 516 dbSNP
rs1486758755 517 dbSNP
rs183964008 521 dbSNP
rs9172 522 dbSNP
rs1009308672 523 dbSNP
rs555481385 530 dbSNP
rs1161916996 536 dbSNP
rs377095448 537 dbSNP
rs573191454 538 dbSNP
rs1173497134 539 dbSNP
rs1377615015 539 dbSNP
rs992740127 541 dbSNP
rs193207987 544 dbSNP
rs540123119 545 dbSNP
rs113268488 549 dbSNP
rs1323128180 550 dbSNP
rs967670324 551 dbSNP
rs1022398419 553 dbSNP
rs868826390 556 dbSNP
rs551271312 557 dbSNP
rs1360225207 560 dbSNP
rs1483460509 563 dbSNP
rs765073613 564 dbSNP
rs1179007975 566 dbSNP
rs1040167639 572 dbSNP
rs972062220 573 dbSNP
rs963461267 582 dbSNP
rs190429891 585 dbSNP
rs886307162 586 dbSNP
rs1321935194 591 dbSNP
rs7298 594 dbSNP
rs953698131 603 dbSNP
rs142241978 609 dbSNP
rs976336734 610 dbSNP
rs7299 612 dbSNP
rs1417126522 619 dbSNP
rs565687269 620 dbSNP
rs185150861 621 dbSNP
rs1297211055 622 dbSNP
rs1465277605 626 dbSNP
rs1206845598 632 dbSNP
rs1249766820 637 dbSNP
rs893526904 640 dbSNP
rs1032524346 641 dbSNP
rs1201872819 642 dbSNP
rs1482932467 645 dbSNP
rs1281648067 646 dbSNP
rs948125083 649 dbSNP
rs1390448178 657 dbSNP
rs1429960543 658 dbSNP
rs373349832 658 dbSNP
rs1162199317 660 dbSNP
rs916651315 661 dbSNP
rs1457908801 665 dbSNP
rs1327917575 671 dbSNP
rs777148892 676 dbSNP
rs992239694 677 dbSNP
rs531961094 681 dbSNP
rs1212505286 685 dbSNP
rs1306179476 690 dbSNP
rs11537852 699 dbSNP
rs1310769873 699 dbSNP
rs960850335 700 dbSNP
rs1233963202 701 dbSNP
rs563277919 707 dbSNP
rs543303492 718 dbSNP
rs1046345078 723 dbSNP
rs1249056585 729 dbSNP
rs1487020372 740 dbSNP
rs377384575 742 dbSNP
rs796236909 742 dbSNP
rs369622129 744 dbSNP
rs1412609982 745 dbSNP
rs1423943064 745 dbSNP
rs1166436631 754 dbSNP
rs1229838093 759 dbSNP
rs192944039 760 dbSNP
rs1313496765 771 dbSNP
rs978290751 777 dbSNP
rs1408385674 789 dbSNP
rs1449853097 791 dbSNP
rs1400793015 800 dbSNP
rs560702031 802 dbSNP
rs897754107 805 dbSNP
rs1295235338 809 dbSNP
rs1021929022 826 dbSNP
rs1327102557 829 dbSNP
rs376200496 834 dbSNP
rs1352599461 835 dbSNP
rs964447696 841 dbSNP
rs141006140 844 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_006711 | 3UTR | UAUACCCCACCCAGCUCAGUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_006711 | 3UTR | CCCACCCAGCUCAGUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_006711 | 3UTR | UAACUUAUACCCCACCCAGCUCAGUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_006711 | 3UTR | CUUAUACCCCACCCAGCUCAGUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000397086.2 | 3UTR | ccccuguaacuuauaccccacccag
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
Click to see details
118 hsa-miR-3160-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT066658 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT075318 SF3B3 splicing factor 3b subunit 3 2 4
MIRT077083 EIF1 eukaryotic translation initiation factor 1 2 2
MIRT100381 HSPA1B heat shock protein family A (Hsp70) member 1B 2 6
MIRT135259 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 4
MIRT184913 ZNF268 zinc finger protein 268 2 2
MIRT218862 CDKN1A cyclin dependent kinase inhibitor 1A 2 2
MIRT446580 FPR2 formyl peptide receptor 2 2 2
MIRT448834 FGD4 FYVE, RhoGEF and PH domain containing 4 2 2
MIRT449455 RNF13 ring finger protein 13 2 2
MIRT452284 CARD8 caspase recruitment domain family member 8 2 2
MIRT452628 FAM162A family with sequence similarity 162 member A 2 2
MIRT453454 GLG1 golgi glycoprotein 1 2 2
MIRT454188 AP1S3 adaptor related protein complex 1 sigma 3 subunit 2 6
MIRT454434 GTF2F1 general transcription factor IIF subunit 1 2 2
MIRT454575 NT5DC3 5'-nucleotidase domain containing 3 2 2
MIRT455555 TRAF1 TNF receptor associated factor 1 2 6
MIRT455841 MPL MPL proto-oncogene, thrombopoietin receptor 2 6
MIRT455969 BCAS4 breast carcinoma amplified sequence 4 2 4
MIRT456805 SIGLEC14 sialic acid binding Ig like lectin 14 2 2
MIRT457320 DUSP19 dual specificity phosphatase 19 2 2
MIRT457366 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT457684 ZNF587 zinc finger protein 587 2 2
MIRT458158 LYRM4 LYR motif containing 4 2 6
MIRT458641 SGPP2 sphingosine-1-phosphate phosphatase 2 2 2
MIRT459134 FADS6 fatty acid desaturase 6 2 2
MIRT459153 NARF nuclear prelamin A recognition factor 2 4
MIRT460460 NOM1 nucleolar protein with MIF4G domain 1 2 4
MIRT460974 STK17B serine/threonine kinase 17b 2 2
MIRT461439 ACSBG1 acyl-CoA synthetase bubblegum family member 1 2 2
MIRT461507 NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 2 2
MIRT462490 GSR glutathione-disulfide reductase 2 2
MIRT462638 PHF5A PHD finger protein 5A 2 2
MIRT463279 ZFX zinc finger protein, X-linked 2 2
MIRT463360 ZFAND4 zinc finger AN1-type containing 4 2 2
MIRT465777 TMOD3 tropomodulin 3 2 2
MIRT466143 TMEM120B transmembrane protein 120B 2 2
MIRT468401 SETD3 SET domain containing 3 2 2
MIRT468998 RNPS1 RNA binding protein with serine rich domain 1 2 2
MIRT471574 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT472108 NME2 NME/NM23 nucleoside diphosphate kinase 2 2 2
MIRT472125 NME1-NME2 NME1-NME2 readthrough 2 2
MIRT473020 MRPS14 mitochondrial ribosomal protein S14 2 2
MIRT473083 MORN4 MORN repeat containing 4 2 2
MIRT475598 HMGB2 high mobility group box 2 2 4
MIRT475937 GXYLT2 glucoside xylosyltransferase 2 2 8
MIRT476117 GPR157 G protein-coupled receptor 157 2 2
MIRT476406 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT478003 DNAL1 dynein axonemal light chain 1 2 2
MIRT487969 IQSEC2 IQ motif and Sec7 domain 2 2 2
MIRT489418 TUBB2A tubulin beta 2A class IIa 2 2
MIRT491522 IL10RA interleukin 10 receptor subunit alpha 2 2
MIRT492673 PLEC plectin 2 2
MIRT493545 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT513085 USP9X ubiquitin specific peptidase 9, X-linked 2 2
MIRT514009 CECR2 CECR2, histone acetyl-lysine reader 2 4
MIRT516683 ZNF860 zinc finger protein 860 2 2
MIRT518392 ZNF250 zinc finger protein 250 2 2
MIRT522683 LUZP1 leucine zipper protein 1 2 6
MIRT524488 CEP97 centrosomal protein 97 2 2
MIRT527457 CLEC12B C-type lectin domain family 12 member B 2 2
MIRT527705 IL17REL interleukin 17 receptor E like 2 2
MIRT531647 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT532381 UMPS uridine monophosphate synthetase 2 2
MIRT532588 MTHFD1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 2 2
MIRT533555 TPM4 tropomyosin 4 2 2
MIRT548371 ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 2 4
MIRT550250 PVR poliovirus receptor 2 2
MIRT552555 ZFP36L2 ZFP36 ring finger protein like 2 2 4
MIRT554113 SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 2 2
MIRT554131 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT561344 ZBTB18 zinc finger and BTB domain containing 18 2 2
MIRT561638 RUNX3 runt related transcription factor 3 2 2
MIRT566497 PBX2P1 PBX homeobox 2 pseudogene 1 2 2
MIRT570583 OTUD7B OTU deubiquitinase 7B 2 2
MIRT572731 MCTS1 MCTS1, re-initiation and release factor 2 2
MIRT574041 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT575231 Fut1 fucosyltransferase 1 2 2
MIRT606811 BICD2 BICD cargo adaptor 2 2 2
MIRT621016 CLSTN3 calsyntenin 3 2 2
MIRT637852 PDCL3 phosducin like 3 2 2
MIRT640477 ZNF557 zinc finger protein 557 2 2
MIRT642827 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT643887 IMP4 IMP4, U3 small nucleolar ribonucleoprotein 2 2
MIRT664874 PCNXL2 pecanex homolog 2 2 2
MIRT680528 PRIM2 DNA primase subunit 2 2 2
MIRT680648 KIAA1456 KIAA1456 2 2
MIRT680807 ZNF578 zinc finger protein 578 2 2
MIRT680921 STX2 syntaxin 2 2 2
MIRT681112 CEP57L1 centrosomal protein 57 like 1 2 2
MIRT681147 INTS7 integrator complex subunit 7 2 2
MIRT681966 TFCP2 transcription factor CP2 2 2
MIRT684316 GTF3C4 general transcription factor IIIC subunit 4 2 2
MIRT684906 GSG2 histone H3 associated protein kinase 2 2
MIRT685499 MED16 mediator complex subunit 16 2 2
MIRT685929 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT686875 SLC25A32 solute carrier family 25 member 32 2 2
MIRT688204 FNIP1 folliculin interacting protein 1 2 2
MIRT688791 CCNB1 cyclin B1 2 2
MIRT689227 RPS19 ribosomal protein S19 2 2
MIRT690470 ZNF33A zinc finger protein 33A 2 2
MIRT691982 PLCXD1 phosphatidylinositol specific phospholipase C X domain containing 1 2 2
MIRT694006 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694529 TRIM72 tripartite motif containing 72 2 2
MIRT695420 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT695784 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT697799 UBXN2A UBX domain protein 2A 2 2
MIRT698275 TMEM2 transmembrane protein 2 2 2
MIRT698317 TMEM136 transmembrane protein 136 2 2
MIRT699971 RREB1 ras responsive element binding protein 1 2 2
MIRT700717 PNO1 partner of NOB1 homolog 2 2
MIRT701721 MTMR12 myotubularin related protein 12 2 2
MIRT701879 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT702959 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT706178 ZNF716 zinc finger protein 716 2 2
MIRT706463 SPRED1 sprouty related EVH1 domain containing 1 2 2
MIRT718154 TTC33 tetratricopeptide repeat domain 33 2 2
MIRT718711 ANKRD18A ankyrin repeat domain 18A 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3160-3p Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-3160-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-3160-3p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-3160-3p Tripterygium wilfordii Hook F resistant tissue
hsa-miR-3160-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3160-3p Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

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