pre-miRNA Information
pre-miRNA hsa-mir-1273h   
Genomic Coordinates chr16: 24203116 - 24203231
Description Homo sapiens miR-1273h stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-1273h-5p
Sequence 33| CUGGGAGGUCAAGGCUGCAGU |53
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1028034199 14 dbSNP
rs542383563 18 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol RARA   
Synonyms NR1B1, RAR
Description retinoic acid receptor alpha
Transcript NM_000964   
Other Transcripts NM_001024809 , NM_001145301 , NM_001145302   
Expression
Putative miRNA Targets on RARA
3'UTR of RARA
(miRNA target sites are highlighted)
>RARA|NM_000964|3'UTR
   1 CCGCCCACGCCACATGGACACAGCCCTCGCCCTCCGCCCCGGCTTTTCTCTGCCTTTCTACCGACCATGTGACCCCGCAC
  81 CAGCCCTGCCCCCACCTGCCCTCCCGGGCAGTACTGGGGACCTTCCCTGGGGGACGGGGAGGGAGGAGGCAGCGACTCCT
 161 TGGACAGAGGCCTGGGCCCTCAGTGGACTGCCTGCTCCCACAGCCTGGGCTGACGTCAGAGGCCGAGGCCAGGAACTGAG
 241 TGAGGCCCCTGGTCCTGGGTCTCAGGATGGGTCCTGGGGGCCTCGTGTTCATCAAGACACCCCTCTGCCCAGCTCACCAC
 321 ATCTTCATCACCAGCAAACGCCAGGACTTGGCTCCCCCATCCTCAGAACTCACAAGCCATTGCTCCCCAGCTGGGGAACC
 401 TCAACCTCCCCCCTGCCTCGGTTGGTGACAGAGGGGGTGGGACAGGGGCGGGGGGTTCCCCCTGTACATACCCTGCCATA
 481 CCAACCCCAGGTATTAATTCTCGCTGGTTTTGTTTTTATTTTAATTTTTTTGTTTTGATTTTTTTAATAAGAATTTTCAT
 561 TTTAAGCACATTTATACTGAAGGAATTTGTGCTGTGTATTGGGGGGAGCTGGATCCAGAGCTGGAGGGGGTGGGTCCGGG
 641 GGAGGGAGTGGCTCGGAAGGGGCCCCCACTCTCCTTTCATGTCCCTGTGCCCCCCAGTTCTCCTCCTCAGCCTTTTCCTC
 721 CTCAGTTTTCTCTTTAAAACTGTGAAGTACTAACTTTCCAAGGCCTGCCTTCCCCTCCCTCCCACTGGAGAAGCCGCCAG
 801 CCCCTTTCTCCCTCTGCCTGACCACTGGGTGTGGACGGTGTGGGGCAGCCCTGAAAGGACAGGCTCCTGGCCTTGGCACT
 881 TGCCTGCACCCACCATGAGGCATGGAGCAGGGCAGAGCAAGGGCCCCGGGACAGAGTTTTCCCAGACCTGGCTCCTCGGC
 961 AGAGCTGCCTCCCGTCAGGGCCCACATCATCTAGGCTCCCCAGCCCCCACTGTGAAGGGGCTGGCCAGGGGCCCGAGCTG
1041 CCCCCACCCCCGGCCTCAGCCACCAGCACCCCCATAGGGCCCCCAGACACCACACACATGCGCGTGCGCACACACACAAA
1121 CACACACACACTGGACAGTAGATGGGCCGACACACACTTGGCCCGAGTTCCTCCATTTCCCTGGCCTGCCCCCCACCCCC
1201 AACCTGTCCCACCCCCGTGCCCCCTCCTTACCCCGCAGGACGGGCCTACAGGGGGGTCTCCCCTCACCCCTGCACCCCCA
1281 GCTGGGGGAGCTGGCTCTGCCCCGACCTCCTTCACCAGGGGTTGGGGCCCCTTCCCCTGGAGCCCGTGGGTGCACCTGTT
1361 ACTGTTGGGCTTTCCACTGAGATCTACTGGATAAAGAATAAAGTTCTATTTATTCTAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ugacGUCGGAA----CUGGAGGGUc 5'
              | |||||      ||||||| 
Target 5' aggcCTGCCTTCCCCTCCCTCCCAc 3'
761 - 785 147.00 -18.66
2
miRNA  3' ugaCGUCGGAACUGGAGGGuc 5'
             | | |||  |||||||  
Target 5' tggGGAACCTCAACCTCCCcc 3'
392 - 412 138.00 -16.10
3
miRNA  3' ugACGUCG--GAACUGGAGGGUc 5'
            |||  |  | || ||||||: 
Target 5' ccTGCCCCCACCTGCCCTCCCGg 3'
85 - 107 137.00 -23.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN24294758 37 COSMIC
COSN30119298 42 COSMIC
COSN1196555 119 COSMIC
COSN30131309 137 COSMIC
COSN15618744 142 COSMIC
COSN24306216 225 COSMIC
COSN31513035 285 COSMIC
COSN13719008 286 COSMIC
COSN15618651 301 COSMIC
COSN31595431 307 COSMIC
COSN15618736 316 COSMIC
COSN7166379 340 COSMIC
COSN23508190 363 COSMIC
COSN23520798 363 COSMIC
COSN18002832 433 COSMIC
COSN26634870 438 COSMIC
COSN18003368 450 COSMIC
COSN21016684 581 COSMIC
COSN28774800 656 COSMIC
COSN20905262 821 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs2229773 3 dbSNP
rs769793497 4 dbSNP
rs1218513818 5 dbSNP
rs912991920 7 dbSNP
rs996352460 9 dbSNP
rs576294738 10 dbSNP
rs1268877692 14 dbSNP
rs1415918839 16 dbSNP
rs1216078635 20 dbSNP
rs1340514647 21 dbSNP
rs761900323 22 dbSNP
rs1195498519 24 dbSNP
rs773450052 25 dbSNP
rs1345963982 27 dbSNP
rs760854493 29 dbSNP
rs1442009995 30 dbSNP
rs1403855464 31 dbSNP
rs1160274962 32 dbSNP
rs1363778498 36 dbSNP
rs1452226981 37 dbSNP
rs1453066635 37 dbSNP
rs543619460 38 dbSNP
rs1391573099 40 dbSNP
rs143781383 41 dbSNP
rs1324214059 42 dbSNP
rs755468217 49 dbSNP
rs1245951322 53 dbSNP
rs1242113889 54 dbSNP
rs1307400442 55 dbSNP
rs1490534269 57 dbSNP
rs1014561656 61 dbSNP
rs1316073084 63 dbSNP
rs942595144 64 dbSNP
rs1267079537 70 dbSNP
rs1334927229 74 dbSNP
rs752624786 77 dbSNP
rs898329126 78 dbSNP
rs1458801440 81 dbSNP
rs1178182679 84 dbSNP
rs1250297316 85 dbSNP
rs937175558 88 dbSNP
rs1167545061 90 dbSNP
rs2229772 92 dbSNP
rs1434567249 93 dbSNP
rs758015735 94 dbSNP
rs1303294811 95 dbSNP
rs1162849705 96 dbSNP
rs1402780163 99 dbSNP
rs1443242076 101 dbSNP
rs1297771819 105 dbSNP
rs1465186545 106 dbSNP
rs746653550 106 dbSNP
rs902493348 107 dbSNP
rs1389390755 109 dbSNP
rs886541517 111 dbSNP
rs1314852792 112 dbSNP
rs1335382530 113 dbSNP
rs944978084 115 dbSNP
rs1270699584 116 dbSNP
rs11544351 117 dbSNP
rs1319335890 120 dbSNP
rs1204807576 127 dbSNP
rs1253258181 128 dbSNP
rs1040611474 129 dbSNP
rs1250357259 129 dbSNP
rs1479866236 130 dbSNP
rs1259480776 131 dbSNP
rs900698133 131 dbSNP
rs1258886004 132 dbSNP
rs545072314 136 dbSNP
rs781040511 137 dbSNP
rs1049327018 138 dbSNP
rs1425897280 140 dbSNP
rs559919766 147 dbSNP
rs527302805 148 dbSNP
rs139482076 154 dbSNP
rs971030813 155 dbSNP
rs190879195 156 dbSNP
rs183204850 165 dbSNP
rs1415985752 167 dbSNP
rs777091819 167 dbSNP
rs1414127097 168 dbSNP
rs1192214145 170 dbSNP
rs1291309695 172 dbSNP
rs1341849237 175 dbSNP
rs990000894 177 dbSNP
rs1466815683 178 dbSNP
rs1294476555 180 dbSNP
rs1305378222 187 dbSNP
rs1020019209 188 dbSNP
rs1281531752 193 dbSNP
rs1485519616 195 dbSNP
rs760945393 202 dbSNP
rs1265887506 208 dbSNP
rs1475819362 210 dbSNP
rs571460851 211 dbSNP
rs776997866 215 dbSNP
rs538792963 216 dbSNP
rs765801130 225 dbSNP
rs547849750 226 dbSNP
rs375417623 227 dbSNP
rs1041061563 229 dbSNP
rs1310999063 231 dbSNP
rs763607614 232 dbSNP
rs1430888467 234 dbSNP
rs1287751391 241 dbSNP
rs910877927 242 dbSNP
rs1311466587 245 dbSNP
rs1236069721 246 dbSNP
rs942416670 249 dbSNP
rs1342647334 250 dbSNP
rs747078113 253 dbSNP
rs1303609560 255 dbSNP
rs1347608817 260 dbSNP
rs1219519747 265 dbSNP
rs763649611 275 dbSNP
rs1288859011 282 dbSNP
rs1448063021 283 dbSNP
rs149687193 285 dbSNP
rs536667337 286 dbSNP
rs1489478177 289 dbSNP
rs929787594 291 dbSNP
rs1375817881 292 dbSNP
rs1194519323 294 dbSNP
rs1157889024 296 dbSNP
rs1394636080 300 dbSNP
rs1046893372 301 dbSNP
rs1171498463 302 dbSNP
rs1417479246 306 dbSNP
rs1410120485 311 dbSNP
rs1401249149 316 dbSNP
rs1159125240 317 dbSNP
rs896348666 322 dbSNP
rs796618173 326 dbSNP
rs1485793914 327 dbSNP
rs1422758765 330 dbSNP
rs1253511298 331 dbSNP
rs950160714 331 dbSNP
rs1342935550 338 dbSNP
rs1045853471 339 dbSNP
rs780727297 340 dbSNP
rs1326245886 341 dbSNP
rs1369767626 342 dbSNP
rs115635151 346 dbSNP
rs1281609017 348 dbSNP
rs1351706275 352 dbSNP
rs1351805231 354 dbSNP
rs1239816973 356 dbSNP
rs117770216 359 dbSNP
rs1310734574 362 dbSNP
rs537346006 367 dbSNP
rs1323586993 372 dbSNP
rs1214395224 377 dbSNP
rs1421843278 378 dbSNP
rs1297282717 379 dbSNP
rs1252673102 382 dbSNP
rs1036098452 386 dbSNP
rs1010379239 388 dbSNP
rs1467285408 392 dbSNP
rs1362018364 396 dbSNP
rs1180698819 399 dbSNP
rs1234417399 400 dbSNP
rs1470356606 401 dbSNP
rs749208030 403 dbSNP
rs1457137436 408 dbSNP
rs906899862 408 dbSNP
rs367819767 409 dbSNP
rs1462612582 412 dbSNP
rs1164977847 413 dbSNP
rs1393330615 416 dbSNP
rs1459578506 417 dbSNP
rs1264349989 420 dbSNP
rs558760636 420 dbSNP
rs370334154 421 dbSNP
rs1336739652 430 dbSNP
rs1263756007 432 dbSNP
rs1441852006 433 dbSNP
rs1278365886 435 dbSNP
rs200674161 438 dbSNP
rs895638454 439 dbSNP
rs1277516327 440 dbSNP
rs375909325 442 dbSNP
rs368586881 443 dbSNP
rs748455062 444 dbSNP
rs1332705034 445 dbSNP
rs1197788587 448 dbSNP
rs771137228 449 dbSNP
rs1021431675 450 dbSNP
rs770479738 450 dbSNP
rs553845872 451 dbSNP
rs1180802486 452 dbSNP
rs1231150271 456 dbSNP
rs759880021 457 dbSNP
rs770262951 458 dbSNP
rs1170557747 460 dbSNP
rs1477157944 462 dbSNP
rs978176612 465 dbSNP
rs1194428851 466 dbSNP
rs973727791 468 dbSNP
rs1316873402 470 dbSNP
rs371896486 471 dbSNP
rs1265552284 472 dbSNP
rs919814609 473 dbSNP
rs1169290360 479 dbSNP
rs924020692 481 dbSNP
rs1396763673 488 dbSNP
rs763553004 489 dbSNP
rs764517107 492 dbSNP
rs1377609340 493 dbSNP
rs917739191 496 dbSNP
rs949281130 497 dbSNP
rs1353648993 498 dbSNP
rs751026996 503 dbSNP
rs761257563 504 dbSNP
rs1338955090 505 dbSNP
rs1195047212 509 dbSNP
rs1272252093 510 dbSNP
rs921895799 513 dbSNP
rs1486504153 514 dbSNP
rs1211529399 520 dbSNP
rs1256637453 521 dbSNP
rs1421613564 524 dbSNP
rs1399265154 525 dbSNP
rs932266587 525 dbSNP
rs767090750 536 dbSNP
rs1373343359 539 dbSNP
rs185566558 546 dbSNP
rs909407267 554 dbSNP
rs1438825362 567 dbSNP
rs1397287004 568 dbSNP
rs1376095323 569 dbSNP
rs940829014 574 dbSNP
rs755818342 577 dbSNP
rs1054471070 578 dbSNP
rs1189444000 595 dbSNP
rs1409291266 597 dbSNP
rs1176861849 600 dbSNP
rs542645312 600 dbSNP
rs1159214379 601 dbSNP
rs1251179447 603 dbSNP
rs1342571242 607 dbSNP
rs1390241533 622 dbSNP
rs1234557946 623 dbSNP
rs1306376049 626 dbSNP
rs1352621189 626 dbSNP
rs1443756744 629 dbSNP
rs906952343 631 dbSNP
rs1005477260 632 dbSNP
rs1374011886 636 dbSNP
rs1017343402 638 dbSNP
rs1401859204 639 dbSNP
rs1156838342 644 dbSNP
rs938394698 645 dbSNP
rs1396960355 651 dbSNP
rs1186727644 653 dbSNP
rs1055476590 654 dbSNP
rs894108589 655 dbSNP
rs893168663 656 dbSNP
rs1010472655 667 dbSNP
rs961408278 669 dbSNP
rs1487724655 682 dbSNP
rs1228050037 688 dbSNP
rs1283468712 690 dbSNP
rs1042008053 691 dbSNP
rs375581332 694 dbSNP
rs879179749 697 dbSNP
rs879892460 700 dbSNP
rs1483568351 704 dbSNP
rs891256751 707 dbSNP
rs1008400522 710 dbSNP
rs1212721441 716 dbSNP
rs1019368378 718 dbSNP
rs1018420528 719 dbSNP
rs779503010 724 dbSNP
rs1415802786 725 dbSNP
rs1028132667 726 dbSNP
rs1482498874 726 dbSNP
rs963777542 731 dbSNP
rs1182478659 734 dbSNP
rs1402707510 735 dbSNP
rs777254933 755 dbSNP
rs1462993411 764 dbSNP
rs759983760 768 dbSNP
rs1413455286 769 dbSNP
rs190326404 780 dbSNP
rs1419960520 782 dbSNP
rs995245706 787 dbSNP
rs1188332863 796 dbSNP
rs1477391770 797 dbSNP
rs1240183761 799 dbSNP
rs1217472055 804 dbSNP
rs1430953012 810 dbSNP
rs1026591491 812 dbSNP
rs951092162 825 dbSNP
rs983096131 829 dbSNP
rs917848162 837 dbSNP
rs1333261535 838 dbSNP
rs985072239 841 dbSNP
rs970927352 844 dbSNP
rs980646195 851 dbSNP
rs927339170 854 dbSNP
rs1346020333 862 dbSNP
rs1322914419 864 dbSNP
rs1467040215 872 dbSNP
rs937394322 884 dbSNP
rs1054566833 885 dbSNP
rs1396546946 888 dbSNP
rs1165524077 896 dbSNP
rs940882740 905 dbSNP
rs531673704 907 dbSNP
rs946040993 909 dbSNP
rs1042324785 914 dbSNP
rs1188051301 923 dbSNP
rs1475504093 926 dbSNP
rs891398413 928 dbSNP
rs543728371 929 dbSNP
rs938462875 931 dbSNP
rs1039860139 933 dbSNP
rs1055932138 933 dbSNP
rs900034578 939 dbSNP
rs1385145849 948 dbSNP
rs1216703873 949 dbSNP
rs767236403 958 dbSNP
rs947034304 959 dbSNP
rs1300734669 961 dbSNP
rs1312668582 965 dbSNP
rs1026724030 970 dbSNP
rs1042994491 974 dbSNP
rs1272148768 975 dbSNP
rs1341212838 986 dbSNP
rs1352697880 987 dbSNP
rs951017275 988 dbSNP
rs1003884505 989 dbSNP
rs903112457 990 dbSNP
rs1205341878 999 dbSNP
rs1025287883 1018 dbSNP
rs1455351137 1022 dbSNP
rs1253079231 1030 dbSNP
rs1177473615 1033 dbSNP
rs970681274 1035 dbSNP
rs1019420409 1036 dbSNP
rs1207022177 1041 dbSNP
rs900980699 1046 dbSNP
rs1267479157 1047 dbSNP
rs981123868 1048 dbSNP
rs926424127 1049 dbSNP
rs1232357845 1050 dbSNP
rs957895244 1052 dbSNP
rs1455048578 1053 dbSNP
rs1029481902 1056 dbSNP
rs953442125 1058 dbSNP
rs1442899126 1064 dbSNP
rs1358345319 1070 dbSNP
rs1310914518 1071 dbSNP
rs984790988 1074 dbSNP
rs1395323263 1075 dbSNP
rs1429512093 1077 dbSNP
rs1157477773 1080 dbSNP
rs1416824427 1081 dbSNP
rs1409581494 1082 dbSNP
rs564963890 1083 dbSNP
rs1481281437 1084 dbSNP
rs1257257337 1085 dbSNP
rs1209190755 1086 dbSNP
rs1486746683 1089 dbSNP
rs1356470107 1092 dbSNP
rs1456615899 1093 dbSNP
rs1292971147 1097 dbSNP
rs532360714 1102 dbSNP
rs914664083 1103 dbSNP
rs115248059 1104 dbSNP
rs1224265917 1105 dbSNP
rs74396306 1107 dbSNP
rs182891484 1108 dbSNP
rs1042945479 1109 dbSNP
rs376581605 1109 dbSNP
rs536023561 1109 dbSNP
rs756956672 1111 dbSNP
rs1159283814 1114 dbSNP
rs552625476 1116 dbSNP
rs548225262 1118 dbSNP
rs1485053351 1120 dbSNP
rs368001358 1120 dbSNP
rs900889212 1120 dbSNP
rs1262498999 1121 dbSNP
rs1216608171 1122 dbSNP
rs931488222 1124 dbSNP
rs1048093137 1126 dbSNP
rs886877284 1127 dbSNP
rs1265457479 1128 dbSNP
rs1355835354 1135 dbSNP
rs1469425073 1137 dbSNP
rs1186200454 1138 dbSNP
rs1004254627 1142 dbSNP
rs1246717505 1143 dbSNP
rs1024628341 1147 dbSNP
rs906213466 1149 dbSNP
rs1432568681 1150 dbSNP
rs1456994063 1152 dbSNP
rs1289390152 1153 dbSNP
rs1391696249 1159 dbSNP
rs1006424345 1162 dbSNP
rs1163369813 1162 dbSNP
rs1002123136 1165 dbSNP
rs1033606247 1166 dbSNP
rs957820351 1171 dbSNP
rs1264153383 1173 dbSNP
rs537376620 1177 dbSNP
rs71355453 1179 dbSNP
rs1164358142 1186 dbSNP
rs1350473000 1189 dbSNP
rs1468065763 1189 dbSNP
rs1271407731 1191 dbSNP
rs1335469478 1193 dbSNP
rs993468523 1193 dbSNP
rs1250487103 1195 dbSNP
rs1463071335 1195 dbSNP
rs994235000 1196 dbSNP
rs1036108068 1199 dbSNP
rs1387780571 1200 dbSNP
rs1029782241 1202 dbSNP
rs1439764304 1203 dbSNP
rs1368133821 1204 dbSNP
rs1271668773 1206 dbSNP
rs1376720478 1207 dbSNP
rs1443664785 1208 dbSNP
rs955455575 1212 dbSNP
rs1214749012 1217 dbSNP
rs1312985292 1218 dbSNP
rs1336575330 1220 dbSNP
rs1206263878 1226 dbSNP
rs1266981711 1227 dbSNP
rs1464807208 1229 dbSNP
rs1454046024 1234 dbSNP
rs1251217457 1235 dbSNP
rs1195586830 1236 dbSNP
rs960112620 1242 dbSNP
rs1244135669 1243 dbSNP
rs1341177280 1246 dbSNP
rs991980308 1250 dbSNP
rs1233103302 1251 dbSNP
rs558844389 1253 dbSNP
rs1021691518 1259 dbSNP
rs1332142830 1270 dbSNP
rs1328734663 1271 dbSNP
rs1390218284 1274 dbSNP
rs967475958 1276 dbSNP
rs1309093964 1285 dbSNP
rs1476337359 1287 dbSNP
rs1434270487 1288 dbSNP
rs978587040 1293 dbSNP
rs924506038 1294 dbSNP
rs934589288 1295 dbSNP
rs1156983890 1298 dbSNP
rs977933436 1301 dbSNP
rs912562575 1302 dbSNP
rs571021564 1304 dbSNP
rs944072489 1305 dbSNP
rs1357428081 1306 dbSNP
rs975601880 1307 dbSNP
rs932371142 1309 dbSNP
rs1211208827 1316 dbSNP
rs756042544 1317 dbSNP
rs1349305124 1322 dbSNP
rs921521555 1324 dbSNP
rs1303266933 1331 dbSNP
rs931457226 1332 dbSNP
rs1277324085 1337 dbSNP
rs1048558052 1343 dbSNP
rs1356945117 1346 dbSNP
rs140111856 1347 dbSNP
rs1289316364 1348 dbSNP
rs888227881 1356 dbSNP
rs1374065880 1358 dbSNP
rs1314976403 1361 dbSNP
rs1415311451 1363 dbSNP
rs575638278 1364 dbSNP
rs1006371526 1374 dbSNP
rs1412647871 1385 dbSNP
rs1286949863 1388 dbSNP
rs1474086717 1394 dbSNP
rs1259413399 1397 dbSNP
rs1037887162 1404 dbSNP
rs1446139949 1411 dbSNP
rs898046509 1415 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ugacgucGGAACUGGAGGGUc 5'
                 |||   ||||||| 
Target 5' ---uuccCCU--CCCUCCCAc 3'
1 - 16
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000425707.3 | 3UTR | UUCCCCUCCCUCCCACUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
494 hsa-miR-1273h-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT074355 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT100721 TJAP1 tight junction associated protein 1 2 2
MIRT115545 MAZ MYC associated zinc finger protein 2 2
MIRT124982 XIAP X-linked inhibitor of apoptosis 2 4
MIRT139911 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT177183 ARL5B ADP ribosylation factor like GTPase 5B 2 4
MIRT187994 MBD6 methyl-CpG binding domain protein 6 2 2
MIRT207410 MAT2A methionine adenosyltransferase 2A 2 6
MIRT241928 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT260110 KLHL21 kelch like family member 21 2 2
MIRT260358 XRCC6 X-ray repair cross complementing 6 2 6
MIRT266428 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT294663 ZNF548 zinc finger protein 548 2 2
MIRT351039 PLEKHB2 pleckstrin homology domain containing B2 2 2
MIRT379943 PRRG4 proline rich and Gla domain 4 2 2
MIRT398983 KAT7 lysine acetyltransferase 7 2 2
MIRT441465 BEST3 bestrophin 3 2 2
MIRT446750 ZNF491 zinc finger protein 491 2 2
MIRT449224 RAD51B RAD51 paralog B 2 2
MIRT450623 AQR aquarius intron-binding spliceosomal factor 2 2
MIRT451090 ZNF584 zinc finger protein 584 2 2
MIRT451558 CIAPIN1 cytokine induced apoptosis inhibitor 1 2 2
MIRT451736 CES3 carboxylesterase 3 2 2
MIRT452411 QDPR quinoid dihydropteridine reductase 2 2
MIRT452559 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT452851 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT452922 DISC1 disrupted in schizophrenia 1 2 2
MIRT453043 TANGO2 transport and golgi organization 2 homolog 2 4
MIRT453097 HOXC4 homeobox C4 2 2
MIRT453297 ZNF394 zinc finger protein 394 2 2
MIRT453593 ZNF557 zinc finger protein 557 2 2
MIRT453787 KBTBD12 kelch repeat and BTB domain containing 12 2 2
MIRT453987 CECR1 adenosine deaminase 2 2 2
MIRT454083 TMEM209 transmembrane protein 209 2 2
MIRT454652 FBXL18 F-box and leucine rich repeat protein 18 2 2
MIRT454753 PFKFB3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 2 2
MIRT455311 TTLL9 tubulin tyrosine ligase like 9 2 2
MIRT456468 SERAC1 serine active site containing 1 2 2
MIRT456554 TOMM20 translocase of outer mitochondrial membrane 20 2 2
MIRT456716 TMEM239 transmembrane protein 239 2 4
MIRT456796 SIGLEC14 sialic acid binding Ig like lectin 14 2 2
MIRT457487 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457999 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT458130 TLCD2 TLC domain containing 2 2 2
MIRT459027 ZNF490 zinc finger protein 490 2 4
MIRT459119 FADS6 fatty acid desaturase 6 2 2
MIRT459315 HAVCR2 hepatitis A virus cellular receptor 2 2 2
MIRT459385 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT459412 FAM83B family with sequence similarity 83 member B 2 2
MIRT459974 RFT1 RFT1 homolog 2 2
MIRT460480 FAM105A family with sequence similarity 105 member A 2 6
MIRT460586 FEM1A fem-1 homolog A 2 2
MIRT460920 NOA1 nitric oxide associated 1 2 4
MIRT461072 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT461590 DPH2 DPH2 homolog 2 2
MIRT461854 ZNF317 zinc finger protein 317 2 2
MIRT462176 ACADL acyl-CoA dehydrogenase, long chain 2 2
MIRT462446 GCDH glutaryl-CoA dehydrogenase 2 2
MIRT463854 WNT7B Wnt family member 7B 2 2
MIRT464310 UST uronyl 2-sulfotransferase 2 2
MIRT464815 UBE2B ubiquitin conjugating enzyme E2 B 2 2
MIRT465453 TOR2A torsin family 2 member A 2 2
MIRT466073 TMEM184C transmembrane protein 184C 2 2
MIRT466514 TBXA2R thromboxane A2 receptor 2 2
MIRT467072 SRRD SRR1 domain containing 2 2
MIRT469551 RARA retinoic acid receptor alpha 2 2
MIRT469741 RAB2B RAB2B, member RAS oncogene family 2 2
MIRT470759 PNPLA6 patatin like phospholipase domain containing 6 2 2
MIRT470875 PLXND1 plexin D1 2 2
MIRT470976 PITPNA phosphatidylinositol transfer protein alpha 2 2
MIRT471048 PIM3 Pim-3 proto-oncogene, serine/threonine kinase 2 2
MIRT471215 PHAX phosphorylated adaptor for RNA export 2 2
MIRT471246 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT471286 PGAM4 phosphoglycerate mutase family member 4 2 2
MIRT471467 PDE7B phosphodiesterase 7B 2 2
MIRT473069 MORN4 MORN repeat containing 4 2 4
MIRT473989 LRRC20 leucine rich repeat containing 20 2 2
MIRT474518 KLHDC8A kelch domain containing 8A 2 2
MIRT474990 KANSL1 KAT8 regulatory NSL complex subunit 1 2 2
MIRT475547 HNRNPUL1 heterogeneous nuclear ribonucleoprotein U like 1 2 2
MIRT476350 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT477298 EPHB2 EPH receptor B2 2 2
MIRT477933 DPM2 dolichyl-phosphate mannosyltransferase subunit 2, regulatory 2 2
MIRT478282 DDX19A DEAD-box helicase 19A 2 4
MIRT478472 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT478559 CTNND1 catenin delta 1 2 2
MIRT478618 CTDNEP1 CTD nuclear envelope phosphatase 1 2 2
MIRT478834 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT479007 COL5A1 collagen type V alpha 1 chain 2 2
MIRT479166 CLSPN claspin 2 2
MIRT482454 ADAR adenosine deaminase, RNA specific 2 4
MIRT483019 KHSRP KH-type splicing regulatory protein 2 4
MIRT483798 CYP2W1 cytochrome P450 family 2 subfamily W member 1 2 6
MIRT486087 SLC7A5 solute carrier family 7 member 5 2 4
MIRT486304 SIPA1 signal-induced proliferation-associated 1 2 2
MIRT486490 MYH11 myosin heavy chain 11 2 2
MIRT486881 TSPYL4 TSPY like 4 2 2
MIRT487125 NCOR2 nuclear receptor corepressor 2 2 2
MIRT487542 TM6SF2 transmembrane 6 superfamily member 2 2 4
MIRT487676 B3GALT5 beta-1,3-galactosyltransferase 5 2 4
MIRT489251 TTLL1 tubulin tyrosine ligase like 1 2 4
MIRT489276 RBM8A RNA binding motif protein 8A 2 8
MIRT489496 CRLF3 cytokine receptor like factor 3 2 4
MIRT489571 SSBP2 single stranded DNA binding protein 2 2 2
MIRT489694 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT490166 TMEM63C transmembrane protein 63C 2 2
MIRT491199 MLLT1 MLLT1, super elongation complex subunit 2 4
MIRT491260 DHX40 DEAH-box helicase 40 2 2
MIRT491385 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT491548 YAE1D1 Yae1 domain containing 1 2 2
MIRT492722 PHF12 PHD finger protein 12 2 2
MIRT493866 FAM73B mitoguardin 2 2 4
MIRT494549 BAK1 BCL2 antagonist/killer 1 2 2
MIRT498586 KRT8 keratin 8 2 2
MIRT498722 SNTN sentan, cilia apical structure protein 2 6
MIRT499982 HIST1H2BD histone cluster 1 H2B family member d 2 4
MIRT503414 SLC25A45 solute carrier family 25 member 45 2 6
MIRT508491 FTO FTO, alpha-ketoglutarate dependent dioxygenase 2 2
MIRT508877 METTL14 methyltransferase like 14 2 2
MIRT509622 RRP7A ribosomal RNA processing 7 homolog A 2 4
MIRT510104 IRAK3 interleukin 1 receptor associated kinase 3 2 8
MIRT510139 PDGFRA platelet derived growth factor receptor alpha 2 4
MIRT510353 ZNF703 zinc finger protein 703 2 6
MIRT510620 TMEM167A transmembrane protein 167A 2 4
MIRT510786 SF3B3 splicing factor 3b subunit 3 2 6
MIRT511021 NRF1 nuclear respiratory factor 1 2 2
MIRT513925 GHITM growth hormone inducible transmembrane protein 2 2
MIRT514342 DNAH17 dynein axonemal heavy chain 17 2 4
MIRT515015 SUMF2 sulfatase modifying factor 2 2 2
MIRT515246 DUSP28 dual specificity phosphatase 28 2 2
MIRT516202 RPP30 ribonuclease P/MRP subunit p30 2 2
MIRT516435 ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 motif 4 2 4
MIRT516666 ZNF860 zinc finger protein 860 2 4
MIRT518373 ZNF250 zinc finger protein 250 2 2
MIRT518930 LSG1 large 60S subunit nuclear export GTPase 1 2 2
MIRT519676 ZNF70 zinc finger protein 70 2 2
MIRT519902 ZFAND4 zinc finger AN1-type containing 4 2 4
MIRT519945 ZCCHC8 zinc finger CCHC-type containing 8 2 2
MIRT520321 UBXN2A UBX domain protein 2A 2 2
MIRT520606 TMEM41B transmembrane protein 41B 2 2
MIRT520663 TMEM11 transmembrane protein 11 2 2
MIRT520852 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT521443 RAD51 RAD51 recombinase 2 2
MIRT521671 PRKAR2A protein kinase cAMP-dependent type II regulatory subunit alpha 2 2
MIRT522281 NKAP NFKB activating protein 2 2
MIRT522333 NCKIPSD NCK interacting protein with SH3 domain 2 8
MIRT522535 MED28 mediator complex subunit 28 2 6
MIRT523478 GNG4 G protein subunit gamma 4 2 2
MIRT523672 FOPNL FGFR1OP N-terminal like 2 2
MIRT523715 FBXW2 F-box and WD repeat domain containing 2 2 4
MIRT523867 ESCO2 establishment of sister chromatid cohesion N-acetyltransferase 2 2 4
MIRT524043 DNAJC8 DnaJ heat shock protein family (Hsp40) member C8 2 2
MIRT524167 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT524928 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT526825 PHC1 polyhomeotic homolog 1 2 2
MIRT531017 TDGF1P3 teratocarcinoma-derived growth factor 1 pseudogene 3 2 2
MIRT536085 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT540681 BMP3 bone morphogenetic protein 3 2 2
MIRT541708 TMEM33 transmembrane protein 33 2 2
MIRT541755 KLF8 Kruppel like factor 8 2 2
MIRT541888 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT545714 SPTLC2 serine palmitoyltransferase long chain base subunit 2 2 2
MIRT559054 C19orf47 chromosome 19 open reading frame 47 2 4
MIRT561748 PLAGL2 PLAG1 like zinc finger 2 2 2
MIRT562365 ETV3 ETS variant 3 2 2
MIRT562821 GCFC2 GC-rich sequence DNA-binding factor 2 2 2
MIRT562900 DNAH10OS dynein axonemal heavy chain 10 opposite strand 2 2
MIRT564452 SLC35E2 solute carrier family 35 member E2 2 5
MIRT569111 ONECUT3 one cut homeobox 3 2 2
MIRT569224 SUSD1 sushi domain containing 1 2 2
MIRT570271 ARPC3 actin related protein 2/3 complex subunit 3 2 2
MIRT570498 TFIP11 tuftelin interacting protein 11 2 2
MIRT570844 GPRC5C G protein-coupled receptor class C group 5 member C 2 2
MIRT571311 TPCN2 two pore segment channel 2 2 2
MIRT572077 EXOC8 exocyst complex component 8 2 2
MIRT572116 DNAJC24 DnaJ heat shock protein family (Hsp40) member C24 2 2
MIRT573054 TRIB1 tribbles pseudokinase 1 2 2
MIRT573483 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT573656 HES6 hes family bHLH transcription factor 6 2 2
MIRT574343 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT576494 Slc35e2 solute carrier family 35, member E2 2 4
MIRT608033 UBLCP1 ubiquitin like domain containing CTD phosphatase 1 2 2
MIRT611326 NANOS1 nanos C2HC-type zinc finger 1 2 2
MIRT613660 KIAA1210 KIAA1210 2 2
MIRT615638 ATF6 activating transcription factor 6 2 2
MIRT618573 RRAD RRAD, Ras related glycolysis inhibitor and calcium channel regulator 2 2
MIRT618865 MBL2 mannose binding lectin 2 2 2
MIRT618962 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT619172 SLC16A4 solute carrier family 16 member 4 2 2
MIRT620298 AQP6 aquaporin 6 2 2
MIRT620683 RFTN2 raftlin family member 2 2 2
MIRT621637 UBXN2B UBX domain protein 2B 2 2
MIRT621993 STK4 serine/threonine kinase 4 2 2
MIRT622421 NUDT19 nudix hydrolase 19 2 2
MIRT622804 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 4
MIRT624786 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 2
MIRT624968 ZNF665 zinc finger protein 665 2 4
MIRT625479 SMAD9 SMAD family member 9 2 2
MIRT626594 ACAA2 acetyl-CoA acyltransferase 2 2 4
MIRT626708 TRIM65 tripartite motif containing 65 2 2
MIRT626975 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT627489 STRIP2 striatin interacting protein 2 2 2
MIRT628505 ZNF878 zinc finger protein 878 2 2
MIRT628533 ZNF701 zinc finger protein 701 2 2
MIRT628591 TMEM251 transmembrane protein 251 2 2
MIRT628818 SLC25A34 solute carrier family 25 member 34 2 2
MIRT628896 IGSF6 immunoglobulin superfamily member 6 2 2
MIRT628958 UBE2D4 ubiquitin conjugating enzyme E2 D4 (putative) 2 2
MIRT629005 OSBPL10 oxysterol binding protein like 10 2 2
MIRT629059 KIF1C kinesin family member 1C 2 2
MIRT629192 PAPOLA poly(A) polymerase alpha 2 2
MIRT629346 TMPRSS11BNL TMPRSS11B N-terminal like, pseudogene 2 2
MIRT629447 WIZ widely interspaced zinc finger motifs 2 2
MIRT629696 XKR4 XK related 4 2 2
MIRT629737 SCD5 stearoyl-CoA desaturase 5 2 2
MIRT629896 SPATA5 spermatogenesis associated 5 2 2
MIRT629953 GLP2R glucagon like peptide 2 receptor 2 2
MIRT630023 MTL5 testis expressed metallothionein like protein 2 2
MIRT630181 TLN1 talin 1 2 2
MIRT630325 PAQR5 progestin and adipoQ receptor family member 5 2 2
MIRT630389 MYH9 myosin heavy chain 9 2 4
MIRT630695 EXTL3 exostosin like glycosyltransferase 3 2 2
MIRT631054 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT631130 SYNJ2 synaptojanin 2 2 2
MIRT631374 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT631557 TRAF3IP2 TRAF3 interacting protein 2 2 2
MIRT631615 PCDHB11 protocadherin beta 11 2 2
MIRT631935 CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 2 4
MIRT632109 SSR1 signal sequence receptor subunit 1 2 2
MIRT632168 CCL22 C-C motif chemokine ligand 22 2 2
MIRT632445 SGTB small glutamine rich tetratricopeptide repeat containing beta 2 2
MIRT632652 NAV1 neuron navigator 1 2 2
MIRT632688 MTMR10 myotubularin related protein 10 2 2
MIRT632828 IGF1 insulin like growth factor 1 2 2
MIRT632905 FRRS1 ferric chelate reductase 1 2 2
MIRT633027 DNAL1 dynein axonemal light chain 1 2 2
MIRT633379 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT633440 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT633726 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 2 2
MIRT633832 WHAMM WAS protein homolog associated with actin, golgi membranes and microtubules 2 2
MIRT633862 ATP6V1A ATPase H+ transporting V1 subunit A 2 2
MIRT634042 NUP155 nucleoporin 155 2 2
MIRT634266 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT634374 RAP2B RAP2B, member of RAS oncogene family 2 2
MIRT634439 PDE7A phosphodiesterase 7A 2 2
MIRT634573 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT634620 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT634693 DSEL dermatan sulfate epimerase-like 2 2
MIRT634768 CD3D CD3d molecule 2 2
MIRT635024 WWTR1 WW domain containing transcription regulator 1 2 2
MIRT635384 NHLRC2 NHL repeat containing 2 2 2
MIRT635577 TTC9C tetratricopeptide repeat domain 9C 2 2
MIRT635793 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT635837 ZNF264 zinc finger protein 264 2 2
MIRT636043 ZSCAN29 zinc finger and SCAN domain containing 29 2 4
MIRT636070 ZNF280C zinc finger protein 280C 2 2
MIRT636697 ARSK arylsulfatase family member K 2 2
MIRT637438 ZNF324B zinc finger protein 324B 2 2
MIRT637582 PLD6 phospholipase D family member 6 2 2
MIRT637672 PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D 2 2
MIRT637887 SLC19A3 solute carrier family 19 member 3 2 4
MIRT638353 RBMS2 RNA binding motif single stranded interacting protein 2 2 4
MIRT638597 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT638821 CRTAP cartilage associated protein 2 2
MIRT638871 CEP97 centrosomal protein 97 2 4
MIRT639660 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT640200 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT641592 TNS4 tensin 4 2 2
MIRT644993 POLR2J3 RNA polymerase II subunit J3 2 2
MIRT645059 UQCRQ ubiquinol-cytochrome c reductase complex III subunit VII 2 2
MIRT646948 UPK3BL uroplakin 3B like 1 2 2
MIRT647306 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT648300 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT649043 SLC1A2 solute carrier family 1 member 2 2 2
MIRT649884 SLFN12L schlafen family member 12 like 2 2
MIRT650196 DOCK7 dedicator of cytokinesis 7 2 2
MIRT654789 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655667 NUP43 nucleoporin 43 2 2
MIRT655925 NDUFA4P1 NDUFA4, mitochondrial complex associated pseudogene 1 2 2
MIRT656433 MARCH6 membrane associated ring-CH-type finger 6 2 2
MIRT657713 GPC4 glypican 4 2 2
MIRT659302 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT659844 CAPZB capping actin protein of muscle Z-line beta subunit 2 2
MIRT660660 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT661308 CPM carboxypeptidase M 2 2
MIRT661473 CHMP1B charged multivesicular body protein 1B 2 2
MIRT661906 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT662064 ZNF284 zinc finger protein 284 2 2
MIRT662491 ANGPT4 angiopoietin 4 2 2
MIRT662657 LRRC47 leucine rich repeat containing 47 2 2
MIRT662804 MSRB2 methionine sulfoxide reductase B2 2 2
MIRT663164 FGFR1OP FGFR1 oncogene partner 2 2
MIRT663376 ZNF770 zinc finger protein 770 2 4
MIRT663418 ZNF607 zinc finger protein 607 2 2
MIRT663990 WDR75 WD repeat domain 75 2 2
MIRT664157 APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F 2 4
MIRT664489 POLR3K RNA polymerase III subunit K 2 2
MIRT665058 CCDC77 coiled-coil domain containing 77 2 2
MIRT665080 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT665420 WDR55 WD repeat domain 55 2 2
MIRT665716 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT665923 TBC1D19 TBC1 domain family member 19 2 4
MIRT666239 SLC38A7 solute carrier family 38 member 7 2 4
MIRT666840 PPTC7 PTC7 protein phosphatase homolog 2 2
MIRT667378 MOB1B MOB kinase activator 1B 2 2
MIRT667573 LONRF2 LON peptidase N-terminal domain and ring finger 2 2 2
MIRT667894 ING1 inhibitor of growth family member 1 2 2
MIRT667977 HECTD3 HECT domain E3 ubiquitin protein ligase 3 2 2
MIRT668197 GCNT4 glucosaminyl (N-acetyl) transferase 4, core 2 2 2
MIRT668279 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT668386 FAT3 FAT atypical cadherin 3 2 2
MIRT668444 FAM208A family with sequence similarity 208 member A 2 2
MIRT668998 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT669180 CCNF cyclin F 2 2
MIRT669444 ATL3 atlastin GTPase 3 2 2
MIRT669661 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT669890 KIAA0754 KIAA0754 2 4
MIRT669973 SSR3 signal sequence receptor subunit 3 2 2
MIRT670153 SLC29A4 solute carrier family 29 member 4 2 2
MIRT670240 TRIM13 tripartite motif containing 13 2 2
MIRT670274 CBY3 chibby family member 3 2 2
MIRT670358 ULBP3 UL16 binding protein 3 2 4
MIRT670627 BVES blood vessel epicardial substance 2 2
MIRT670731 HOOK3 hook microtubule tethering protein 3 2 2
MIRT670770 TRIM66 tripartite motif containing 66 2 2
MIRT670913 DESI1 desumoylating isopeptidase 1 2 2
MIRT671216 CLSTN1 calsyntenin 1 2 2
MIRT671398 ERCC6L2 ERCC excision repair 6 like 2 2 2
MIRT671427 TOX4 TOX high mobility group box family member 4 2 2
MIRT671654 TRUB2 TruB pseudouridine synthase family member 2 2 4
MIRT671702 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT672136 PLEKHH1 pleckstrin homology, MyTH4 and FERM domain containing H1 2 2
MIRT672395 SLC10A6 solute carrier family 10 member 6 2 2
MIRT672508 GGCX gamma-glutamyl carboxylase 2 2
MIRT672572 RNF24 ring finger protein 24 2 2
MIRT672789 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT673019 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT673190 C10orf76 chromosome 10 open reading frame 76 2 2
MIRT673372 ZNF124 zinc finger protein 124 2 2
MIRT673495 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 6
MIRT673852 CAPN7 calpain 7 2 2
MIRT673929 ZNF500 zinc finger protein 500 2 2
MIRT673986 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT674076 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT674123 RPL7L1 ribosomal protein L7 like 1 2 2
MIRT674297 THAP5 THAP domain containing 5 2 2
MIRT674370 POLR3D RNA polymerase III subunit D 2 2
MIRT674641 NKRF NFKB repressing factor 2 2
MIRT674665 PLCE1 phospholipase C epsilon 1 2 2
MIRT674725 ZNF451 zinc finger protein 451 2 4
MIRT674779 NPR1 natriuretic peptide receptor 1 2 2
MIRT674889 RASSF9 Ras association domain family member 9 2 2
MIRT675017 SNX1 sorting nexin 1 2 2
MIRT675341 KLHL26 kelch like family member 26 2 2
MIRT675416 CLEC7A C-type lectin domain containing 7A 2 2
MIRT675497 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT675615 EHD2 EH domain containing 2 2 2
MIRT675735 AHR aryl hydrocarbon receptor 2 2
MIRT675857 ATP1B4 ATPase Na+/K+ transporting family member beta 4 2 2
MIRT675990 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676213 TMEM91 transmembrane protein 91 2 2
MIRT676406 MRO maestro 2 2
MIRT677299 CPSF2 cleavage and polyadenylation specific factor 2 2 2
MIRT677387 PCNP PEST proteolytic signal containing nuclear protein 2 2
MIRT677859 ABI2 abl interactor 2 2 2
MIRT677965 ITGB3 integrin subunit beta 3 2 2
MIRT678175 CRCP CGRP receptor component 2 2
MIRT678273 PTRH2 peptidyl-tRNA hydrolase 2 2 2
MIRT678665 SCUBE3 signal peptide, CUB domain and EGF like domain containing 3 2 2
MIRT679003 TTC39B tetratricopeptide repeat domain 39B 2 2
MIRT679053 RMDN1 regulator of microtubule dynamics 1 2 2
MIRT679461 RHOF ras homolog family member F, filopodia associated 2 2
MIRT679513 RAB36 RAB36, member RAS oncogene family 2 2
MIRT679914 ZKSCAN3 zinc finger with KRAB and SCAN domains 3 2 2
MIRT680029 OSBPL2 oxysterol binding protein like 2 2 4
MIRT680245 NDUFA7 NADH:ubiquinone oxidoreductase subunit A7 2 2
MIRT680279 AKIP1 A-kinase interacting protein 1 2 2
MIRT680499 PRIM2 DNA primase subunit 2 2 2
MIRT680586 ZNF573 zinc finger protein 573 2 2
MIRT680629 KIAA1456 KIAA1456 2 2
MIRT680819 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT680998 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 2 2
MIRT681122 INTS7 integrator complex subunit 7 2 2
MIRT681161 IBA57 IBA57 homolog, iron-sulfur cluster assembly 2 2
MIRT681221 DUSP19 dual specificity phosphatase 19 2 2
MIRT681304 IKZF3 IKAROS family zinc finger 3 2 2
MIRT681341 BRI3BP BRI3 binding protein 2 2
MIRT681608 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT681779 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT681892 SLC11A2 solute carrier family 11 member 2 2 2
MIRT682084 ITGA3 integrin subunit alpha 3 2 4
MIRT682139 SMS spermine synthase 2 2
MIRT682217 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT682367 PHACTR4 phosphatase and actin regulator 4 2 2
MIRT682535 EXOSC2 exosome component 2 2 2
MIRT682618 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT683643 ZNF695 zinc finger protein 695 2 2
MIRT684008 FOLR1 folate receptor 1 2 2
MIRT684442 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT684855 ZNF749 zinc finger protein 749 2 2
MIRT684956 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT685044 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685095 DTD2 D-tyrosyl-tRNA deacylase 2 (putative) 2 2
MIRT685382 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT685456 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT685810 SLC27A1 solute carrier family 27 member 1 2 2
MIRT685913 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT686665 TMEM120B transmembrane protein 120B 2 2
MIRT686955 SFT2D2 SFT2 domain containing 2 2 2
MIRT687118 QPCTL glutaminyl-peptide cyclotransferase like 2 2
MIRT687739 KIAA1328 KIAA1328 2 2
MIRT688063 GLUL glutamate-ammonia ligase 2 2
MIRT688191 FNIP1 folliculin interacting protein 1 2 2
MIRT688769 CDH7 cadherin 7 2 2
MIRT688979 ATP6AP1 ATPase H+ transporting accessory protein 1 2 2
MIRT689572 NUDT7 nudix hydrolase 7 2 2
MIRT689683 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT689930 MANSC1 MANSC domain containing 1 2 2
MIRT690089 PNMA2 paraneoplastic Ma antigen 2 2 2
MIRT690190 C5orf45 MRN complex interacting protein 2 2
MIRT690246 CAMLG calcium modulating ligand 2 2
MIRT690411 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT690840 DSN1 DSN1 homolog, MIS12 kinetochore complex component 2 2
MIRT690889 FUT2 fucosyltransferase 2 2 2
MIRT691107 ADIPOQ adiponectin, C1Q and collagen domain containing 2 2
MIRT691229 DFNB59 pejvakin 2 2
MIRT691300 ZNF681 zinc finger protein 681 2 2
MIRT691366 GP5 glycoprotein V platelet 2 2
MIRT691797 WARS tryptophanyl-tRNA synthetase 2 2
MIRT692142 CEP104 centrosomal protein 104 2 2
MIRT692572 NCMAP non-compact myelin associated protein 2 2
MIRT692649 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT692744 NDUFS5 NADH:ubiquinone oxidoreductase subunit S5 2 2
MIRT693092 SCNM1 sodium channel modifier 1 2 2
MIRT693296 SYTL3 synaptotagmin like 3 2 2
MIRT693392 ZNF460 zinc finger protein 460 2 2
MIRT693530 ZNF708 zinc finger protein 708 2 2
MIRT693562 PIGR polymeric immunoglobulin receptor 2 2
MIRT694492 AGBL5 ATP/GTP binding protein like 5 2 2
MIRT694722 LLGL1 LLGL1, scribble cell polarity complex component 2 2
MIRT694866 ZNF417 zinc finger protein 417 2 2
MIRT695070 ZNF17 zinc finger protein 17 2 2
MIRT695451 COX18 COX18, cytochrome c oxidase assembly factor 2 2
MIRT695724 ZNF117 zinc finger protein 117 2 2
MIRT695898 MED16 mediator complex subunit 16 2 2
MIRT696244 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT696259 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT696512 C3 complement C3 2 2
MIRT696560 TTC21B tetratricopeptide repeat domain 21B 2 2
MIRT696643 AGXT2 alanine--glyoxylate aminotransferase 2 2 2
MIRT696791 DHODH dihydroorotate dehydrogenase (quinone) 2 2
MIRT696819 PLLP plasmolipin 2 2
MIRT697088 GPKOW G-patch domain and KOW motifs 2 2
MIRT697153 INMT indolethylamine N-methyltransferase 2 2
MIRT697202 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697322 ZNF641 zinc finger protein 641 2 2
MIRT697578 YME1L1 YME1 like 1 ATPase 2 2
MIRT697619 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT698619 TES testin LIM domain protein 2 2
MIRT698804 STK38 serine/threonine kinase 38 2 2
MIRT698949 SPAST spastin 2 2
MIRT699083 SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 2 2
MIRT699430 SLC1A5 solute carrier family 1 member 5 2 2
MIRT699550 SIT1 signaling threshold regulating transmembrane adaptor 1 2 2
MIRT700324 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT700360 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT700462 PURB purine rich element binding protein B 2 2
MIRT701677 MYADM myeloid associated differentiation marker 2 2
MIRT701757 MSL2 MSL complex subunit 2 2 2
MIRT701977 MIER3 MIER family member 3 2 2
MIRT703178 GPBP1 GC-rich promoter binding protein 1 2 2
MIRT703203 GOLGA3 golgin A3 2 2
MIRT703359 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT703425 FYTTD1 forty-two-three domain containing 1 2 2
MIRT703484 FNDC3B fibronectin type III domain containing 3B 2 2
MIRT703590 FBXO45 F-box protein 45 2 2
MIRT703806 EVI5 ecotropic viral integration site 5 2 2
MIRT703915 EPG5 ectopic P-granules autophagy protein 5 homolog 2 2
MIRT704234 DHDDS dehydrodolichyl diphosphate synthase subunit 2 2
MIRT704646 CLCC1 chloride channel CLIC like 1 2 2
MIRT705151 C11orf58 chromosome 11 open reading frame 58 2 2
MIRT705480 ASXL2 additional sex combs like 2, transcriptional regulator 2 2
MIRT705530 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT705661 ANKRD40 ankyrin repeat domain 40 2 2
MIRT706144 ZNF674 zinc finger protein 674 2 2
MIRT706473 SNX27 sorting nexin family member 27 2 2
MIRT708254 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT708838 SCAND3 zinc finger BED-type containing 9 1 1
MIRT710437 BTNL3 butyrophilin like 3 2 2
MIRT711325 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT716151 RBM48 RNA binding motif protein 48 2 2
MIRT717402 ZCCHC24 zinc finger CCHC-type containing 24 2 2
MIRT720866 ADCY5 adenylate cyclase 5 2 2
MIRT722226 ZNF503 zinc finger protein 503 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-1273h-5p Paclitaxel 36314 NSC125973 approved sensitive High Ovarian Cancer cell line (SKOV3)
hsa-miR-1273h-5p Tripterygium wilfordii Hook F resistant tissue
hsa-miR-1273h-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (MGC-803)

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