miRTarBase - #MIRT471258


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pre-miRNA Information
pre-miRNA hsa-mir-3135a   
Genomic Coordinates chr3: 20137565 - 20137641
Description Homo sapiens miR-3135a stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3135a
Sequence 10| UGCCUAGGCUGAGACUGCAGUG |31
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 19 3 + 20137592 26449202, 27587585 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs985884355 3 dbSNP
rs1202916855 20 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol PGM2L1   
Synonyms BM32A, PMMLP
Description phosphoglucomutase 2 like 1
Transcript NM_173582   
Expression
Putative miRNA Targets on PGM2L1
3'UTR of PGM2L1
(miRNA target sites are highlighted)		 
>PGM2L1|NM_173582|3'UTR
   1 GGGTACACCAATATGTCATGACACTGTGTGGGCATATGGAACAGAGCAACCGAGAACTGCATACATTGAACCTTGTGTTA
  81 GCATTCTCTCTCTATCTCATCTGGCCGAGTATCTTTTTCCTTTTATTTTCTTTCTTTTTGGTCAACTGGCTAGACTAAAC
 161 AAAGTATAAGTTTGAAATGAAATGGTCTAGAGGGAAATGATTCAAATTTTTTCATAATTCAAACAAAAGTTATTACACTA
 241 AAAGTATTATAGTAACGTATTGTCCTTCCGTTAACAGAAACATCACAATTCAAAAGTGAGTTTTCTTATTATAGTGTGAT
 321 TAAGCCTAGTTCTGTATCTCGTAATTGTGTATAGCATGGTAAAAGAAAAAAAAAAAGACAGGTAAATGTTATATAATTGT
 401 AGGGTTAGTTAAGGAAATTAGTCCATAAAATTGGCAAGAAAATGGTACTTTCCTTGATTGTTATGAAAAAGTGTCATTGT
 481 GACATCACAGGTATTAATTTACAAATTAGAGTATTTGAAATAGGATATTTAGCATTTCTGTAGTTTAGAACAGATGTTAC
 561 AGTGTGTGGTTTTGGCATGTCTGTTTCAGGTGCCCTTGGTGCAGTATAAATTTACTGTATGTATTTAAAATTCTGATGTT
 641 TACTGAACATAAAACAATAGTGGCAACACTCCTATTGGCTTTGTTCTTATCAAATTTCTCAGTGCCTTCTCAGGGTCTGG
 721 TGTGAACAGAAAAAACAGTGTTCCTGCATTTACCATAATTTAATCAGTCAATTTGCAGATAGCTAAGGAAAATCTTCCAA
 801 AATCTGTAGGTGCTTCCTCTATATCAAGTGAGTTTGCTGATTTTAAAATCTTAGGAATATAAATAAAGATCTTAATAAAA
 881 GCAAGCTTAATGTAGTTAAGGATCTTCATATTAGAATTGTGTCATTTATCAAACCTTTTATTACAGAAAAAAATCTGAAC
 961 TGAGAAAGGAGCTCTGAATTTATTTGACAGTCTAACTTTTGAATTACATTTTTGTAAGTAGATTTATTCTTTTATTTTAT
1041 GAAGTAATGTTAATTTTACTAAGAATAAAACATCCAAATTTTAAGTATTATGAAATACTAAAACTACATGTTTTAAAACA
1121 GAGGTCCAGTTTATTCTAACATCTTGCTGACTTCTGTAGAATTTCTGATTGCATGACTATTATTTATCTTCTTTTAGTGT
1201 AGAAAATAATTTTTTACAAAAAGTCACTTTTGGGCTGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCT
1281 GAGGCAGGTGGATCACAATGTCAGGAGTTTGAGACTAGCCTGGCCAATATGGTGAAACCCTGTCTCTACTAAAAATACAA
1361 AAATTAGCCGGGTGTGGTGGTGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCTAGG
1441 AGGCTGAGATTGCAGTGAGCCGAAATCACGCCACTACACTCCAGCCTGGGCAACAGAGGGAGACTCCATCTCAAAAAAAA
1521 AAAAAGTCACTTTTGGCTAATCATGCAGTCTTCTGAAAAGGTTTAATAGAGAAATGCTGTTTAGGCTGGGCTTGGTGGCT
1601 CACATCTGTAATACCAGCGCTTTGGGAGGCTGAGGCAGGAGGATTGCTTGAGGCCAGGAGTTTAAGTTACAGAACTATGA
1681 TCACACTGCCGCACTGAAGCCTGGATGACAGAGTGAGACCTTATCTCAAAAAAAAAAAAAAAAAGAGAGAGAGAGAGAAA
1761 AAGAAATGCTGTGTTTAATCTTCTTAAAATGTATCTTGTCCTACATAGTTCTCAGAATACATATGGGGTATAGTTAGGAG
1841 ATAACAATAACAAGACCTAAACAAATTGCTTATGGGAGATAGCACTGTAATTAGAGAATTTATTTCATATAAAATAATAA
1921 TATAAAGTTTGAACTGATTAGAATGTTCCTTAAATCATGGTTTCGTTTGTTGCAGCTGTCAGCTAACATTTGGTTGAGCT
2001 CATATAATCCAAACCTAATTGTCCAACTATTGTATTGCCACTATTGTTAATTTGTTCCTTCCTTACTTTCTTATTGTTGG
2081 ATCTTATATGACTGTATGACTGTAGATAATAGACAGCTAGCTAAATGTAGAGCACCATTTTTCTCAATGAGTTTGTTTTC
2161 AAAGGCTTTGCACTGGAGAAGATATGTGTAGAATTTTTGTTTTATTTTTAAAATGTGTAAAACATCTTTTGTTTTATATG
2241 CTTTTAAGAATGTAGATTGTAATTTAGGAAATGGCATATATTCTGCAAAGTGGTATAATGTTGTATATATGAAAAACAGG
2321 TATATTTGGTTTAGTTCTGTGTTTCAGTGACTGATAAACAAAAATGAAGCTAAAATGAATCAACGGCTCATTCATAGTTA
2401 CTAAAGCCATGTCATGACTGTCATTCTATTATGAAGAAAACAGTTTTATTTGAGTGCTTTAATATAATGCAACATTTAAG
2481 TCATCTTAAGGTGAAAAGTTATTGAAGTGTTCTTCTCTCAAGTTAACAAAATTTTACAAATGTTCCTGAAGTGTATCGAT
2561 TGAGGGAATTATTTTATTCTAGCCTGTCATGAGTCTGTCTGAGCATGATACTTAACATGAACTTGATGTAGTAGGTGCAC
2641 ATTTGCCTAACAGGATAAATTCAGTGATAGCCCAAGCTGGTCAGGAGAGACAGAAGTGCTGGCTAGGAGGTCTCAGCCTC
2721 GGGCACTACAATGTTTATCTTTTTCTTTTTGAACAATATTGTGAAAATGATTGCATTCTCATTGAGCATGAAAGTCAAAA
2801 CTGGAATTTTCTAAAGCTTTGGAGAAAAGGAGAGAATTAGTAGGGCAAGATCAAAGCATACATTGGAAATAAACAGTAGA
2881 AATAAGCAAACAATATAAAGAGACACGGGAAATGCTTCTCGTGAAGGGCAAATGTAACACCATAACAGTAGGGAATAAAC
2961 TGTGTCCCACCTGTTTACTTGTGTTTATTTGTTGTTATGATGAGTATGCACCTACCATTTTCCTTTATTGTGATCACTAA
3041 AATGAGGCCAAGGTTTAGGAGGTGAGAAAAAGTATCCCTTTTACGGATTCAGTTCCTGCTAGGATGTTGTATCAGAATCA
3121 TGTGAGAACTCAGGAAGAGGTAGAGCAGAAATAAAAAGGAAGAAAATGTAGATTAGAAAATAAGACTTCTGAGAAAAAGT
3201 TCAAGGAATAAAGATTGTTTGACTCTGGAGAGGAGAAAGCTGTTGAGATAGTTTGCTAAGTTTGCTAATAAAGCTTTATT
3281 GAGTCTTTTATTGAAGGGTTCAAAGTAAGAAATACTATGCCATAGTGTTCTCCATCTCTAGTGAAGACAGAACCAGAGGG
3361 AATAAGGATCTTTTTTTTAAAGACAGCATGGAAAGTTTAAGATTTAGGAACTTCTTGAGAAATCTTCATAATATCTTCTA
3441 TTCAAAATCTTTTTTTTATTTTTAAGGGAATAAAAATTTTAAAAATTAAGAGATATACAGATGACTTTTTAAGGGTCCTT
3521 CTTTCCAGCACATTTTTTTTAAAAACTCAGGTTAGAACAAAAATGTCATAAAGGGCACTAAAAGTAACATTTGGGTTTCA
3601 CTCCATATCTAGAAGAATTTAGCTCACAAAACAATTTTTGTGTGTTTTGAGTAACTGATGCATAAGTGCAATGAATAATT
3681 TTCCTGCTTCACTGTTATTTTTAATTTAACCTGGCAAATTAAGTGAGACTTGAACAAAATTTTGTTCATCTTGAAGAATG
3761 TATAGTGGCTTAGGTTATTTGAGGTTTTCGTTTTGAATATATATGTTGTTATTTTGATGTAGATACGTTAGCAGATGGAG
3841 AGGTTCTAAGAGATTGGATACTTTGGAATGTCTTTATATAGGAAATAGACCTCCCATTTCTTAAGCAAGTTGCTTCTGGA
3921 ATTGATGCAACAGGGATATTAGCTGTAGTTTAATGGATAAGTTGTTCTATGAGCTGCTGCTATCAGTACTTTTTTCCACA
4001 TTTTCCATTGATATTTGTGATGCTTGAAAAATCCAAACTTCACTTGGATACATTTAATTTTATGCCTTTTTCTCTCTACC
4081 TCCCACTTTTCCTAGGCACCCTTGCACATTTTGTTACTGTGAAGGACTATTGCCCTGTTACCTCACTGATAAGAAATCTC
4161 AACTGTATTCATTCAGAATGCTTTAAGCTTAGTCATAAACTACATTTGCCTATGGACCTTTGGTTATTTTGTTAATGTTG
4241 TCATTATATTTAAGACTTATTGTAGGAAGTAATTTTAAATCTATTTCATAACCTGTTTTGATCTGTCTGCATACTGCTAT
4321 ATGTTAATTTATTACGGCCTTTTACAATTCACTTGTCATCTGAGATTGTTCTAGAAACTGATGAGGAAAGAGTCGTACTA
4401 ACCAAAATGAATGGGCAATTGACATAACATTCTATTTCAGGTTTCCTTGTACTTGGGGAGCCAAAGCACAAGATCTAAGG
4481 AAATCTTATTCACATTTGTCCCTCAGAGCATCTTACCCTAAGCCATAGAGGTATAAATAGTAAGATGAGAATTGCTCATT
4561 GTCTGACTCCTTGCACAGCATGAATTTAATTCTAGTTGGAAACAAAGTTAGTGTTGACTACTGGTTACCTTAAAGTATTC
4641 ACCATACTATATATTTATTAGACCATCTTTCCTCTTTGTTTATTCAAGACTATGTACTTATAAAAGAGAACCTATAAGAA
4721 TGTGTAGAGTGACCAAATAGGGACAAAGTGACATACCTAGAGTTTGCTGCTCAAATTTTTCCACTAGCGTAACCCTAAAG
4801 CAGAGGGGCATGATGAAGGGGGAAGGGGTTCTGAGAGCAAAATCAGAATCAGCCTACCACTGACATGAAGTGTGTTCTGT
4881 CTTTAAAATGTAAGTGAATTTTGCATTCTTTATAATAAAACTTTTAATATAAAAATGATATGTTTAATCTTTACTGAAAC
4961 TTATGCCACCACAAAGGAGCACCATGTTCATCACGTGGCTGCTCAGTTTTCTCCCCCAGTGCCCTCACCCCCAGTGGAGG
5041 CAAGTCCTTGAGCTACACACACTGGCTGTAGTGCAAGATATATAAACATAGGCCGGGCTCGGTGGCTCATGCCTGTAATC
5121 CTAGCACTTTGGGAGGCCGAAGCAGGTGGATCATCTGAGGTCGGGAGATTGAGACTAGCCTGACCGACATGGAGAAACCC
5201 TGTGTCCACTAAAAATACAAAATTAGCCGGGTGTGGTGGCACATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGG
5281 AGAATCACTTGAACCCAGGAGGTGGAGGTTGTGGTGAGCCAAGATCGCGCCGTTGCACTCCAGCCTGGGCAACAAGAGTG
5361 AAACTCCATCTCAAAAAAAAAAAAAAAAGATATATAAACATAGAACATATCCAGACTATTTCCTGCCCTTGGAATCTGAC
5441 CTTCAGAAGGATTAATGCCAAACTAAACTGACCTGAAACAGTTTTGTTACTATTGGCATTCCTTGACTAAAAAGGACCAC
5521 CTGATGCTCAGTCCCGAGAGTAGGAATCGTGGTTTATTATTTTTCATATCCATACCACCTAGTTCAGTACCTGTTATAGA
5601 GTGTTTAATTGCTGATACTAGGAATTAAGGGATTTTTTAAAAGTAGCAAATAGTTTAAGGAACAATCAAAAAATGAATTT
5681 TCTAATTCAGTTTTTTCAATGAAGTCCCATCACTGAACTTTATAATGTAATGTTTATTAAGCAGACATCCCCTTAAATAC
5761 TCAGTTTCTTTGGAGAGAGCAAAGCATATCTCTCTGTGGAAATTATATATAATGCCTGGTATTTTACACTCAAAGCAAGG
5841 TGTTGGCCAGGAAGGTAAAGAAATGGTGTCTATGTAGACTTAATATCACTAGTCTAAGTGTCATTTTGAGCCTAGTAGCA
5921 CTACCTTCCAAGTGAGTCACAACAAATTTGATCCTATTTGGTATGTTTTTGTCCACTGTTATGATTCATCATGTATCTTA
6001 CAAGAGCCACTCAAGCAAGACTCTGCTTCTATGTATGGTGAGGCCTTGTTGTTCTAGGCTAGAATAAACTCTTTGTATGC
6081 CTCATTGAATATGCCAGGTAAAATTTATGCAGTCAAGAATGAATTATTTTTCTGACTAAAGTGTGTAGCAGTAGTTCAAA
6161 ATTGTGCCCTTGTTTTAACAGTTTCTGTCAACATCTTCTCATTTTTCCCTACAAAAACACCAGGGTGTATTATAAGTACT
6241 GCCTGTGAGAATTTGCACTTTATGTATTTGTGTGTGGATTTCTTGTGGTTTTAGCCAAATGAAGTGTTATCAGTAATAAA
6321 CAGGTCTCTTCATAGGCATG
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' guGACGUCAGAGUCGGAUCCGu 5'
            :|||| || ||||||:||| 
Target 5' cgTTGCACTC-CAGCCTGGGCa 3'
 5331 - 5351 159.00 -28.90
2 
miRNA  3' guGACGUCAGAGUCGGAUCCGu 5'
            || || || ||||||:||| 
Target 5' caCTACACTC-CAGCCTGGGCa 3'
 1472 - 1492 155.00 -26.00
3 
miRNA  3' gugacGUCAGAGUCGGAUCCGu 5'
               || |:|:  ||||||| 
Target 5' cctccCACTTTT--CCTAGGCa 3'
 4079 - 4098 149.00 -15.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN19656803 14 COSMIC
COSN30602645 16 COSMIC
COSN26988763 18 COSMIC
COSN30111648 54 COSMIC
COSN31523668 62 COSMIC
COSN30107873 75 COSMIC
COSN20046302 77 COSMIC
COSN22247259 98 COSMIC
COSN30170507 101 COSMIC
COSN31587214 128 COSMIC
COSN30112813 139 COSMIC
COSN27659594 257 COSMIC
COSN27473140 365 COSMIC
COSN25291909 366 COSMIC
COSN30543504 700 COSMIC
COSN31488385 700 COSMIC
COSN30541826 705 COSMIC
COSN26643706 769 COSMIC
COSN31516329 791 COSMIC
COSN31548861 871 COSMIC
COSN10091726 1457 COSMIC
COSN7019355 1857 COSMIC
COSN21246223 2397 COSMIC
COSN1542740 3160 COSMIC
COSN31568019 3615 COSMIC
COSN21127625 3681 COSMIC
COSN1542739 4432 COSMIC
COSN8690455 5002 COSMIC
COSN7019352 5138 COSMIC
COSN23056080 5170 COSMIC
COSN6611339 5367 COSMIC
COSN27588946 5372 COSMIC
COSN31526869 5882 COSMIC
COSN26600204 5987 COSMIC
COSN25311366 6236 COSMIC
COSN1542738 6288 COSMIC
COSN31483205 6289 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1249213469 1 dbSNP
rs757845172 2 dbSNP
rs1203412387 4 dbSNP
rs1442586087 5 dbSNP
rs749455842 8 dbSNP
rs948088318 11 dbSNP
rs1044782 14 dbSNP
rs756968407 15 dbSNP
rs751446447 18 dbSNP
rs376585328 24 dbSNP
rs1317283292 25 dbSNP
rs374676133 26 dbSNP
rs1352682887 31 dbSNP
rs1306518483 33 dbSNP
rs752200786 35 dbSNP
rs185001330 37 dbSNP
rs1359903556 44 dbSNP
rs777669369 47 dbSNP
rs1298832 48 dbSNP
rs370535898 51 dbSNP
rs954613762 52 dbSNP
rs1258957284 61 dbSNP
rs1469064297 65 dbSNP
rs1177122950 75 dbSNP
rs868319840 77 dbSNP
rs944207606 87 dbSNP
rs532428669 88 dbSNP
rs1375090466 90 dbSNP
rs538707685 91 dbSNP
rs192405699 100 dbSNP
rs547132460 103 dbSNP
rs1352782941 105 dbSNP
rs952360764 106 dbSNP
rs186930102 107 dbSNP
rs112433155 111 dbSNP
rs1026616546 123 dbSNP
rs1225238922 125 dbSNP
rs972687196 140 dbSNP
rs1346741725 157 dbSNP
rs641441 161 dbSNP
rs961565710 169 dbSNP
rs561067169 170 dbSNP
rs779204997 179 dbSNP
rs75249920 180 dbSNP
rs76962314 181 dbSNP
rs757581205 183 dbSNP
rs182748704 199 dbSNP
rs1204486649 202 dbSNP
rs886513650 204 dbSNP
rs1233940324 213 dbSNP
rs760299832 222 dbSNP
rs1426460926 225 dbSNP
rs769837928 229 dbSNP
rs141931414 235 dbSNP
rs1489240196 236 dbSNP
rs1263221594 238 dbSNP
rs1175748868 239 dbSNP
rs1023712757 256 dbSNP
rs1328157643 262 dbSNP
rs1355063831 267 dbSNP
rs192802345 269 dbSNP
rs1057067415 270 dbSNP
rs1369959919 280 dbSNP
rs1234652813 282 dbSNP
rs501752 287 dbSNP
rs1276218264 288 dbSNP
rs1300357755 296 dbSNP
rs938643483 306 dbSNP
rs1226663835 308 dbSNP
rs551253352 313 dbSNP
rs188233101 329 dbSNP
rs1440061070 340 dbSNP
rs550001399 341 dbSNP
rs879195112 341 dbSNP
rs1252829439 345 dbSNP
rs1044596391 349 dbSNP
rs1195782028 354 dbSNP
rs1240554414 355 dbSNP
rs1475180217 355 dbSNP
rs1388816470 359 dbSNP
rs1302691306 360 dbSNP
rs1430480116 365 dbSNP
rs902794867 368 dbSNP
rs1041292001 377 dbSNP
rs911354908 377 dbSNP
rs944242918 377 dbSNP
rs370351031 392 dbSNP
rs1474324349 393 dbSNP
rs914769282 401 dbSNP
rs1372332054 402 dbSNP
rs114857959 403 dbSNP
rs1270282930 407 dbSNP
rs17132947 433 dbSNP
rs1232074319 448 dbSNP
rs182818170 454 dbSNP
rs573360372 464 dbSNP
rs600145 471 dbSNP
rs1446644227 479 dbSNP
rs1212609086 485 dbSNP
rs981377908 491 dbSNP
rs1203580496 498 dbSNP
rs1185776677 502 dbSNP
rs1417106129 505 dbSNP
rs969866150 506 dbSNP
rs1028653267 507 dbSNP
rs1339268716 509 dbSNP
rs1382434736 514 dbSNP
rs1399815187 517 dbSNP
rs974684534 523 dbSNP
rs190522473 525 dbSNP
rs1318565493 527 dbSNP
rs1235864758 545 dbSNP
rs75453783 548 dbSNP
rs1022725952 552 dbSNP
rs1412365126 570 dbSNP
rs1292081661 591 dbSNP
rs1356693899 600 dbSNP
rs1247540970 601 dbSNP
rs1016134117 609 dbSNP
rs538127873 611 dbSNP
rs1329632403 620 dbSNP
rs1005088098 621 dbSNP
rs886525874 635 dbSNP
rs1288398655 651 dbSNP
rs1282808801 674 dbSNP
rs1410542401 675 dbSNP
rs1352374493 677 dbSNP
rs1258226946 686 dbSNP
rs1306233980 687 dbSNP
rs185720068 701 dbSNP
rs1189513761 702 dbSNP
rs1361919078 710 dbSNP
rs1469412244 711 dbSNP
rs1395668401 712 dbSNP
rs1158840365 714 dbSNP
rs598869 722 dbSNP
rs1432438339 723 dbSNP
rs1311750312 724 dbSNP
rs1002842150 743 dbSNP
rs1467331169 745 dbSNP
rs1398366925 748 dbSNP
rs1426784239 752 dbSNP
rs1305449964 754 dbSNP
rs1175203149 755 dbSNP
rs1335593560 764 dbSNP
rs774258069 771 dbSNP
rs1311863810 794 dbSNP
rs1345995037 802 dbSNP
rs559021843 804 dbSNP
rs1210363241 806 dbSNP
rs1044355793 812 dbSNP
rs1484276538 815 dbSNP
rs1202148769 818 dbSNP
rs1248305725 820 dbSNP
rs1011870108 826 dbSNP
rs1381864459 828 dbSNP
rs1452203212 832 dbSNP
rs7941916 836 dbSNP
rs1179013738 856 dbSNP
rs1395199704 857 dbSNP
rs1053295120 860 dbSNP
rs1467109332 862 dbSNP
rs1295897395 864 dbSNP
rs1396450245 864 dbSNP
rs1437815007 867 dbSNP
rs1333801735 868 dbSNP
rs934800831 869 dbSNP
rs1369217976 887 dbSNP
rs923698908 890 dbSNP
rs902509689 891 dbSNP
rs1041697927 894 dbSNP
rs1008450929 918 dbSNP
rs1051541963 923 dbSNP
rs1250795254 929 dbSNP
rs933041503 933 dbSNP
rs566893830 935 dbSNP
rs116569261 939 dbSNP
rs963332811 943 dbSNP
rs1353328376 951 dbSNP
rs1229289819 986 dbSNP
rs1267636987 987 dbSNP
rs1434502917 989 dbSNP
rs919703844 1004 dbSNP
rs559944018 1005 dbSNP
rs147104466 1014 dbSNP
rs759882080 1014 dbSNP
rs1392787307 1018 dbSNP
rs1286594696 1022 dbSNP
rs983320610 1032 dbSNP
rs1326943879 1035 dbSNP
rs766149998 1046 dbSNP
rs530229095 1048 dbSNP
rs1370047351 1053 dbSNP
rs981771495 1061 dbSNP
rs1294962867 1070 dbSNP
rs950574664 1086 dbSNP
rs567804556 1100 dbSNP
rs1334673491 1102 dbSNP
rs989973440 1102 dbSNP
rs551052533 1106 dbSNP
rs1403581044 1117 dbSNP
rs1332525680 1118 dbSNP
rs957196188 1120 dbSNP
rs532827725 1124 dbSNP
rs1032880436 1126 dbSNP
rs970113524 1134 dbSNP
rs1022954919 1141 dbSNP
rs1019583902 1148 dbSNP
rs1011952485 1169 dbSNP
rs893406350 1172 dbSNP
rs1196534880 1174 dbSNP
rs1416369183 1176 dbSNP
rs1053752758 1177 dbSNP
rs1351923857 1180 dbSNP
rs1451972380 1188 dbSNP
rs776546984 1193 dbSNP
rs1156368604 1195 dbSNP
rs530647972 1198 dbSNP
rs999104219 1209 dbSNP
rs891325521 1217 dbSNP
rs1401943261 1224 dbSNP
rs1291469670 1234 dbSNP
rs1190176594 1240 dbSNP
rs1051264143 1241 dbSNP
rs1028566588 1245 dbSNP
rs1213260657 1252 dbSNP
rs995706932 1253 dbSNP
rs1218207227 1255 dbSNP
rs1209736719 1261 dbSNP
rs1460999899 1263 dbSNP
rs898658877 1269 dbSNP
rs183395088 1272 dbSNP
rs768803177 1286 dbSNP
rs1417673760 1288 dbSNP
rs562994593 1301 dbSNP
rs1284739009 1305 dbSNP
rs1361444654 1313 dbSNP
rs1248132488 1316 dbSNP
rs544995236 1328 dbSNP
rs528339067 1329 dbSNP
rs558930261 1331 dbSNP
rs1335901521 1332 dbSNP
rs542254871 1333 dbSNP
rs1381133089 1334 dbSNP
rs1390386439 1338 dbSNP
rs909143080 1339 dbSNP
rs577628692 1341 dbSNP
rs573297103 1344 dbSNP
rs1353983441 1345 dbSNP
rs950616376 1350 dbSNP
rs1241801000 1353 dbSNP
rs1277647192 1354 dbSNP
rs190799373 1364 dbSNP
rs1390882417 1368 dbSNP
rs1164475219 1369 dbSNP
rs981232762 1370 dbSNP
rs1385154539 1375 dbSNP
rs1189617309 1376 dbSNP
rs1451658667 1379 dbSNP
rs1176991061 1387 dbSNP
rs1381244868 1390 dbSNP
rs1441838552 1393 dbSNP
rs562487279 1405 dbSNP
rs1023448069 1413 dbSNP
rs543487937 1415 dbSNP
rs544542750 1418 dbSNP
rs1360860719 1435 dbSNP
rs1292178182 1443 dbSNP
rs1220332965 1445 dbSNP
rs1439851937 1449 dbSNP
rs1357272314 1450 dbSNP
rs1330447512 1455 dbSNP
rs1377346593 1457 dbSNP
rs1031655227 1461 dbSNP
rs559079899 1462 dbSNP
rs199675520 1468 dbSNP
rs999554626 1469 dbSNP
rs369484431 1470 dbSNP
rs891378110 1477 dbSNP
rs538967681 1484 dbSNP
rs954019222 1499 dbSNP
rs1306282821 1504 dbSNP
rs1363751096 1507 dbSNP
rs1268167977 1511 dbSNP
rs1429655215 1512 dbSNP
rs1192037843 1522 dbSNP
rs1028616016 1526 dbSNP
rs1417571840 1526 dbSNP
rs531316190 1526 dbSNP
rs567129841 1529 dbSNP
rs1325027963 1535 dbSNP
rs1029846227 1536 dbSNP
rs1422145143 1542 dbSNP
rs553695155 1543 dbSNP
rs536692776 1546 dbSNP
rs1323591941 1547 dbSNP
rs900268826 1550 dbSNP
rs1330150136 1555 dbSNP
rs1436675336 1559 dbSNP
rs762671446 1565 dbSNP
rs1359244590 1574 dbSNP
rs1169731543 1579 dbSNP
rs1015732616 1582 dbSNP
rs186131466 1591 dbSNP
rs1417862750 1593 dbSNP
rs1320560092 1598 dbSNP
rs1212241477 1601 dbSNP
rs1039162854 1604 dbSNP
rs941773796 1609 dbSNP
rs1272873611 1613 dbSNP
rs780354567 1615 dbSNP
rs577879267 1618 dbSNP
rs772439122 1619 dbSNP
rs1475110026 1627 dbSNP
rs929259028 1627 dbSNP
rs180849922 1629 dbSNP
rs1975 1647 dbSNP
rs1467056232 1652 dbSNP
rs1162540942 1668 dbSNP
rs1389728669 1671 dbSNP
rs561877484 1674 dbSNP
rs1342975739 1676 dbSNP
rs894106115 1684 dbSNP
rs1290971654 1685 dbSNP
rs571354064 1690 dbSNP
rs915734685 1691 dbSNP
rs1357492799 1710 dbSNP
rs1211903289 1711 dbSNP
rs1270697589 1713 dbSNP
rs1446592976 1723 dbSNP
rs1213772934 1724 dbSNP
rs1367877235 1725 dbSNP
rs1284746527 1726 dbSNP
rs1402587448 1727 dbSNP
rs1265350770 1728 dbSNP
rs1344281873 1728 dbSNP
rs1308078795 1729 dbSNP
rs1373544554 1729 dbSNP
rs1478793799 1730 dbSNP
rs1445048455 1735 dbSNP
rs935905638 1740 dbSNP
rs990664259 1741 dbSNP
rs1472990769 1742 dbSNP
rs1301219600 1743 dbSNP
rs1491421727 1744 dbSNP
rs1238791675 1745 dbSNP
rs1278110543 1745 dbSNP
rs1298126 1745 dbSNP
rs1298292720 1745 dbSNP
rs201292918 1745 dbSNP
rs34926765 1745 dbSNP
rs1241126856 1747 dbSNP
rs1353275010 1747 dbSNP
rs1174481993 1748 dbSNP
rs1484711823 1749 dbSNP
rs1198709384 1753 dbSNP
rs1442891985 1757 dbSNP
rs540384078 1757 dbSNP
rs1032125066 1759 dbSNP
rs1444053217 1759 dbSNP
rs924459484 1759 dbSNP
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rs944524488 1773 dbSNP
rs1403584542 1789 dbSNP
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rs1252692519 1812 dbSNP
rs779404970 1822 dbSNP
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rs1447843002 1827 dbSNP
rs1311705620 1828 dbSNP
rs115533846 1845 dbSNP
rs986877085 1846 dbSNP
rs1345643287 1854 dbSNP
rs528260814 1855 dbSNP
rs1236210321 1856 dbSNP
rs954028775 1873 dbSNP
rs559267664 1876 dbSNP
rs1029894603 1879 dbSNP
rs542491831 1882 dbSNP
rs1452143907 1884 dbSNP
rs1197557984 1893 dbSNP
rs1264654699 1894 dbSNP
rs1377682074 1896 dbSNP
rs1468086930 1897 dbSNP
rs1166629125 1899 dbSNP
rs997027707 1900 dbSNP
rs75482329 1908 dbSNP
rs189010941 1921 dbSNP
rs1333739521 1940 dbSNP
rs371887387 1941 dbSNP
rs887526830 1943 dbSNP
rs1288490916 1944 dbSNP
rs1016248933 1955 dbSNP
rs1063807 1955 dbSNP
rs1224957690 1958 dbSNP
rs1371818842 1964 dbSNP
rs138144894 1965 dbSNP
rs545626324 1973 dbSNP
rs1259678205 1979 dbSNP
rs1487310674 1994 dbSNP
rs1449243005 2009 dbSNP
rs1408706227 2014 dbSNP
rs1012587431 2015 dbSNP
rs1335118318 2016 dbSNP
rs894159871 2020 dbSNP
rs147001260 2021 dbSNP
rs1190810476 2041 dbSNP
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rs77771152 2066 dbSNP
rs1000250153 2068 dbSNP
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rs953948964 5727 dbSNP
rs1352214701 5732 dbSNP
rs779696566 5738 dbSNP
rs1282374754 5741 dbSNP
rs1331370619 5742 dbSNP
rs1234953565 5773 dbSNP
rs1249170222 5777 dbSNP
rs147162668 5779 dbSNP
rs143541462 5790 dbSNP
rs1299656388 5796 dbSNP
rs1028045675 5808 dbSNP
rs1277429563 5820 dbSNP
rs1463798666 5829 dbSNP
rs1489987872 5834 dbSNP
rs1222273835 5835 dbSNP
rs1268454495 5840 dbSNP
rs1435193377 5847 dbSNP
rs1399015336 5868 dbSNP
rs1191326339 5869 dbSNP
rs1372657565 5877 dbSNP
rs1475803085 5882 dbSNP
rs1034726354 5889 dbSNP
rs386754997 5892 dbSNP
rs139635516 5893 dbSNP
rs1302389493 5902 dbSNP
rs898191668 5907 dbSNP
rs1036654277 5910 dbSNP
rs758047169 5911 dbSNP
rs547702142 5913 dbSNP
rs1001866954 5921 dbSNP
rs1388236630 5936 dbSNP
rs1481105851 5950 dbSNP
rs527954215 5966 dbSNP
rs1293000241 5969 dbSNP
rs1325446936 5974 dbSNP
rs1228522659 5977 dbSNP
rs1299146010 5981 dbSNP
rs1004120311 5982 dbSNP
rs565718727 5983 dbSNP
rs1198833206 5987 dbSNP
rs1489676287 5990 dbSNP
rs1420177951 5991 dbSNP
rs1261327584 5992 dbSNP
rs1022221649 6014 dbSNP
rs1383458734 6024 dbSNP
rs1442766202 6035 dbSNP
rs564306295 6044 dbSNP
rs1164008976 6047 dbSNP
rs1368915571 6051 dbSNP
rs1459278012 6054 dbSNP
rs1286847349 6057 dbSNP
rs896368342 6058 dbSNP
rs1435321867 6065 dbSNP
rs750241913 6075 dbSNP
rs1056718979 6078 dbSNP
rs1244522140 6082 dbSNP
rs78478064 6085 dbSNP
rs1457486123 6087 dbSNP
rs1263924404 6091 dbSNP
rs182867868 6095 dbSNP
rs544289181 6098 dbSNP
rs8471 6105 dbSNP
rs946779226 6108 dbSNP
rs116484359 6113 dbSNP
rs1460931362 6114 dbSNP
rs988109151 6117 dbSNP
rs910509516 6118 dbSNP
rs1156712200 6139 dbSNP
rs1410944617 6148 dbSNP
rs1457494386 6154 dbSNP
rs1160934668 6179 dbSNP
rs1403397805 6180 dbSNP
rs985079525 6193 dbSNP
rs1302894758 6196 dbSNP
rs1232515830 6198 dbSNP
rs14530 6198 dbSNP
rs555317651 6201 dbSNP
rs540535809 6209 dbSNP
rs1308887104 6210 dbSNP
rs114432674 6211 dbSNP
rs147406340 6214 dbSNP
rs1336939139 6225 dbSNP
rs759595913 6227 dbSNP
rs1261531504 6229 dbSNP
rs1028219634 6238 dbSNP
rs1034737653 6253 dbSNP
rs774310067 6261 dbSNP
rs1399502837 6262 dbSNP
rs141308785 6272 dbSNP
rs575156843 6285 dbSNP
rs191044012 6289 dbSNP
rs1250902519 6297 dbSNP
rs1454821068 6317 dbSNP
rs1365987769 6318 dbSNP
rs969096478 6324 dbSNP
rs962428282 6325 dbSNP
rs1413525426 6327 dbSNP
rs1022352970 6328 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' gugacGUCAGAGUCGGAUCcgu 5'
               || |:|:  |||||   
Target 5' ccuccCACUUUU--CCUAG--- 3'
 		15 - 31
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000298198.4 | 3UTR | CCUUUUUCUCUCUACCUCCCACUUUUCCUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
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Click to see details
39 hsa-miR-3135a Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092740 SETD5 SET domain containing 5 2 4
MIRT098840 PCMT1 protein-L-isoaspartate (D-aspartate) O-methyltransferase 2 2
MIRT462095 TMEM214 transmembrane protein 214 2 2
MIRT467617 SLC7A5 solute carrier family 7 member 5 2 2
MIRT471258 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT474676 KLF10 Kruppel like factor 10 2 4
MIRT474882 KCTD5 potassium channel tetramerization domain containing 5 2 4
MIRT495898 DESI1 desumoylating isopeptidase 1 2 2
MIRT511377 IKZF3 IKAROS family zinc finger 3 2 2
MIRT534180 SLC8A1 solute carrier family 8 member A1 2 2
MIRT540056 CEP104 centrosomal protein 104 2 2
MIRT540147 GTF2B general transcription factor IIB 2 4
MIRT540184 GSTM4 glutathione S-transferase mu 4 2 2
MIRT540465 ZNF71 zinc finger protein 71 2 2
MIRT540584 ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit 2 4
MIRT542390 WDR12 WD repeat domain 12 2 2
MIRT542407 SYNJ2BP synaptojanin 2 binding protein 2 2
MIRT542657 TAF11 TATA-box binding protein associated factor 11 2 2
MIRT544052 C9orf64 chromosome 9 open reading frame 64 2 2
MIRT551350 AGBL5 ATP/GTP binding protein like 5 2 2
MIRT556685 KLHL28 kelch like family member 28 2 2
MIRT561678 RAD54L2 RAD54 like 2 2 2
MIRT576721 Wars tryptophanyl-tRNA synthetase 2 2
MIRT610461 SYNPO2L synaptopodin 2 like 2 4
MIRT632361 SRRD SRR1 domain containing 2 2
MIRT636713 ARSK arylsulfatase family member K 2 2
MIRT637684 PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D 2 2
MIRT648531 KIAA1143 KIAA1143 2 2
MIRT658732 ELK1 ELK1, ETS transcription factor 2 2
MIRT666554 RNF115 ring finger protein 115 2 2
MIRT667689 KNSTRN kinetochore localized astrin/SPAG5 binding protein 2 2
MIRT668169 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT668634 DYRK1A dual specificity tyrosine phosphorylation regulated kinase 1A 2 2
MIRT668692 DNAL1 dynein axonemal light chain 1 2 2
MIRT679412 GMCL1 germ cell-less, spermatogenesis associated 1 2 2
MIRT692259 SLC2A5 solute carrier family 2 member 5 2 2
MIRT693281 GINM1 glycoprotein integral membrane 1 2 2
MIRT698158 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT705567 ARHGEF18 Rho/Rac guanine nucleotide exchange factor 18 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-31 5-aza-2'-deoxycytidine (5-Aza-CdR) approved 451668 Microarray Pancreatic Cancer MiaPACA-2 cells 19407485 2009 up-regulated
miR-31 5-aza-2'-deoxycytidine (5-Aza-CdR) + trichostatin A(TSA) NULL NULL Microarray Pancreatic Cancer MiaPACA-2 cells 19407485 2009 up-regulated
miR-31 Trichostatin A (TSA) NULL 444732 Microarray Pancreatic Cancer MiaPACA-2 cells 19407485 2009 up-regulated
miR-31 5-Fluorouracil approved 3385 Microarray HCT-116 colon cancer cell line 19956872 2010 down-regulated
miR-31 Ginsenoside Rh2 NULL 119307 Microarray NSCLC cell line A549 23152132 2013 down-regulated
miR-31 Doxorubicin approved 31703 Microarray heart 22859947 2012 up-regulated
miR-31 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) NULL 15625 Quantitative real-time PCR thymus 23024791 2012 down-regulated
miR-31 Tamoxifen approved 2733526 Microarray rat liver 17343880 2007 up-regulated
miR-31 Budesonide approved 5281004 Microarray neonatal mice liver 20145010 2010 down-regulated
miR-31 Phenethyl isothiocyanate(PEITC) NULL 16741 Microarray neonatal mice liver 20145010 2010 down-regulated
miR-31 Leptin NULL NULL Quantitative real-time PCR muscles 20800581 2010 up-regulated
miR-31 Cocaine NULL 446220 Next-generation sequencing ventral striatum 21708909 2011 down-regulated
miR-31 Longevinex NULL NULL Quantitative real-time PCR ischemia/reperfusion [I/R] rat model 21203465 2011 down-regulated
miR-31 Longevinex NULL NULL Quantitative real-time PCR normal heart 21203465 2011 up-regulated
miR-31 Resveratrol NULL 445154 Quantitative real-time PCR ischemia/reperfusion [I/R] rat model 21203465 2011 down-regulated
miR-31 Resveratrol NULL 445154 Quantitative real-time PCR normal heart 21203465 2011 up-regulated
miR-31 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 up-regulated
miR-31 Perfluorooctane sulfonate NULL 74483 Microarray zebrafish embryos 20878907 2011 up-regulated
miR-31 Calcium sulfate (CaS) NULL 24497 Microarray MG63E osteoblast-like cells 17618507 2008 down-regulated
miR-31 Valproate approved 3121 Quantitative real-time PCR CD4+, CD25- T cells 20427269 2010 down-regulated
miR-31 Enoxacin approved 3229 Quantitative real-time PCR HCT-116 and RKO colon cancer cell lines 21368194 2011 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-31 Tamoxifen 2733525 NSC180973 approved sensitive Low Breast Cancer cell line (MCF-7, T47D)
hsa-mir-31 Sorafenib 216239 NSC747971 approved resistant High Hepatocellular Carcinoma cell line (HepG2, SK-HEP-1)
hsa-mir-31 Cisplatin 5460033 NSC119875 approved sensitive High Lung Adenocarcinoma cell line (A549)
hsa-mir-31 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-mir-31 Paclitaxel 36314 NSC125973 approved sensitive cell line (BAS)
hsa-mir-31 Doxorubicin 31703 NSC123127 approved sensitive cell line (BAS)
hsa-mir-31 Paclitaxel 36314 NSC125973 approved sensitive cell line (W1)
hsa-mir-31 Cisplatin 5460033 NSC119875 approved sensitive cell line (W1)
hsa-mir-31 Methotrexate 126941 NSC740 approved sensitive cell line (W1)
hsa-mir-31 Topotecan 60699 NSC609699 approved sensitive cell line (W1)
hsa-mir-31 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-mir-31 Androstenedione 6128 NSC9563 resistant cell line (MCF-7)
hsa-mir-31 Androstenedione+Anastrozole resistant cell line (MCF-7)
hsa-mir-31 Cisplatin 5460033 NSC119875 approved resistant cell line (KYSE)
hsa-mir-31 Tamoxifen 2733525 NSC180973 approved sensitive cell line (MCF7)
hsa-miR-3135a Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (COC1)
hsa-mir-3135a Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-mir-3135a Docetaxel+Cisplatin+5-Fluorouracil resistant tissue (hypopharyngeal squamous cell carcinoma)
hsa-miR-3135a Palbociclib 5330286 NSC758247 approved sensitive tissue (breast cancer)
hsa-miR-3135a Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3135a Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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