pre-miRNA Information
pre-miRNA hsa-mir-655   
Genomic Coordinates chr14: 101049550 - 101049646
Synonyms MIRN655, hsa-mir-655, MIR655
Description Homo sapiens miR-655 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-655-5p
Sequence 23| AGAGGUUAUCCGUGUUAUGUUC |44
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs766575622 4 dbSNP
rs754023562 5 dbSNP
rs757713353 10 dbSNP
rs369862924 11 dbSNP
rs552601004 12 dbSNP
rs753191773 14 dbSNP
rs569206109 15 dbSNP
rs373094888 18 dbSNP
rs778280798 22 dbSNP
Putative Targets

Gene Information
Gene Symbol NCBP2   
Synonyms CBC2, CBP20, NIP1, PIG55
Description nuclear cap binding protein subunit 2
Transcript NM_001042540   
Other Transcripts NM_007362   
Expression
Putative miRNA Targets on NCBP2
3'UTR of NCBP2
(miRNA target sites are highlighted)
>NCBP2|NM_001042540|3'UTR
   1 GTGGTGAGAGCTCTGTCAGTGACAAACACTCCTTTGGCCTGTTGAATTTGCTGAAGAACATCACCTAAAGTCTGCACACG
  81 AGCCCATTTTTACCAAGATTTGATCAGTGTCTTTACTGAGCTGGAAGCCTCTGAAAGTTATTAAAGGACAGAATCCAAAA
 161 GAATGCCTTTAATTCTTGTCTGAGAATCTTGGCCATGTGTCAGATTATCAGAACAATTTTGTTACCAGGTCAGAAATTGT
 241 GTTCTTTGACAACAGATTGGATCTGTAATGTTGATTAGTCTTTAGCCATAACCACTACACTTTTAGAAAGACAGAAAAAT
 321 GTAAGAATTTGTTTTTACCATAATGAGTCTTAAGTAGGTTCATGATCTACATTGGGGCCTGGGATTATTTTTTTAATTTT
 401 AAGTTTGCATGAGATAGCCTAATAAATGGAGGTGGGGCCAGGCATGGTGGCTCACACGTGTAATCCCAACACTTTGGGAG
 481 GCTGAGGAGGAAGGATAGCTTGAGGCCAGGAGTTTGAGACTAGACTGGGCAACATAGCAAGACCCCGTCTCTACAAAGCA
 561 CAACGAAAAACAACAAATGGAGTTGTGCTATGTTGTATTGCTTTGCACAAAATTAGGAACAGGTGTTTGACAATTGAATT
 641 TGTTTTCTGTGAATTCTAACCTCTAAAGGCATGCTTAGAGGTCAAGGACCTTCCTGTGTAGTTGGTGCAAAAGCAATCTC
 721 CACAGGACAGCACTGCTTCCATGCTTCATACATCAGGAAATGAGGCCAGAACTTGAGTATTTACTAACACGTTTTTCAAA
 801 AGATGTCAGTGTTATACCTAAAGCTAAAAAAAAGCAAGGGTTTGTCATAGAGGGAACCTCTAAATAATTTCAGGGGTAGG
 881 GGAGATGTTGTCAATAGGAAATGGGATAAAATATCAAGAGACAATGAAAACACTGCCTTGACATGAGGACCAGCAAGTTT
 961 ATTCTTTTCATTTTCAGTGATGTTGGGAATGGACTGGGTTTTAAAAGGGAGCTTGAAGAGGGAATGTTTGACAGTCACAG
1041 AAGGTTCCTGCAGCAGATGCCTCTTTTAGCCATTTCTCATTTTTTTCCTCAAATTTTACCTACTGAGGCTCAAGCCTTCA
1121 CAGTGAGCTGATGGTCTCTACAGGGAGGGGAGTCTAGGGAATTTATTTGGTATTTGTAAGGCAAGAGGTGATTTCTCTCT
1201 AATATATCTGAGTTATTGCTCATTTAAAACTGTTAAGTCCAGTATAATTTTCCCTGATATGAAAAAATGTGCATTTTTTT
1281 CACTTAGCAACAAAGTACCTTCTAATTTCCAATAGTCCGTGAAAGTTGGGGCTGAAGTACCTAAGTGTGAATGTCTCTCC
1361 CGTTAAACTGAGTGTAGAAATCTGAATTTTTAAAAGAGCTGTAACTAGTTGTAAGTGCTTAGGAAGAAACTTTGCAAACA
1441 TTTAATGAGGATACACTGTTCATTTTTAAAATTCCTTCACACTGTAATTTAATGTGTTTTATATTCTTTTGTAGTAAAAC
1521 AACATAACTCAGATTTCTACAGGAGACAGTGGTTTTATTTGGATTGTCTTCTGTAATAGGTTTCAATAAAGCTGGATGAA
1601 CTTATCGTTAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' cuuguaUUGUGCCUAUUGGAGa 5'
                ||: |   ||||||| 
Target 5' tctgtgAATTC---TAACCTCt 3'
646 - 664 141.00 -8.40
2
miRNA  3' cuuGUAUUGUGCCUAUUGGAGa 5'
             ||||: | ||  |||||| 
Target 5' tgtCATAG-AGGG--AACCTCt 3'
843 - 861 129.00 -15.60
3
miRNA  3' cuuguAUUGUGC-CUAUUGGAga 5'
               | :||:| ||||:|||  
Target 5' taagtTTGCATGAGATAGCCTaa 3'
400 - 422 125.00 -14.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30187645 56 COSMIC
COSN15322278 58 COSMIC
COSN30171552 62 COSMIC
COSN1274568 70 COSMIC
COSN30473743 71 COSMIC
COSN32074544 86 COSMIC
COSN30171761 102 COSMIC
COSN30171861 147 COSMIC
COSN31574024 217 COSMIC
COSN29212174 288 COSMIC
COSN1940323 584 COSMIC
COSN20099606 1142 COSMIC
COSN7600286 1349 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs547679541 4 dbSNP
rs1434772917 6 dbSNP
rs749816894 10 dbSNP
rs1305086784 16 dbSNP
rs778366118 17 dbSNP
rs754021945 18 dbSNP
rs201508336 19 dbSNP
rs748564020 25 dbSNP
rs552199599 27 dbSNP
rs758046835 28 dbSNP
rs750089031 31 dbSNP
rs778293551 34 dbSNP
rs950704196 39 dbSNP
rs756701788 40 dbSNP
rs1183519695 41 dbSNP
rs753798818 42 dbSNP
rs763975182 46 dbSNP
rs1208015293 47 dbSNP
rs760571803 50 dbSNP
rs2290730 58 dbSNP
rs367820976 60 dbSNP
rs980145174 65 dbSNP
rs541458010 67 dbSNP
rs1167964196 73 dbSNP
rs574037481 79 dbSNP
rs1321028703 80 dbSNP
rs1034186476 82 dbSNP
rs982261865 92 dbSNP
rs562195277 96 dbSNP
rs1415712964 98 dbSNP
rs148353630 101 dbSNP
rs1338915538 105 dbSNP
rs577418303 109 dbSNP
rs775577492 125 dbSNP
rs1270813785 127 dbSNP
rs1437632972 129 dbSNP
rs576717012 133 dbSNP
rs1179116590 141 dbSNP
rs143336711 146 dbSNP
rs893474703 159 dbSNP
rs1032042377 167 dbSNP
rs996925753 170 dbSNP
rs899543847 178 dbSNP
rs1219552706 184 dbSNP
rs1193400009 189 dbSNP
rs1243370959 196 dbSNP
rs1474109371 197 dbSNP
rs767162882 198 dbSNP
rs1490979992 205 dbSNP
rs1390100649 209 dbSNP
rs539739814 210 dbSNP
rs572737605 211 dbSNP
rs1435794262 213 dbSNP
rs1006545705 214 dbSNP
rs1400386834 223 dbSNP
rs180792675 229 dbSNP
rs1319159956 241 dbSNP
rs1351914057 245 dbSNP
rs1328278859 248 dbSNP
rs1432984713 248 dbSNP
rs1296859402 253 dbSNP
rs535460218 257 dbSNP
rs890863243 263 dbSNP
rs1277959153 271 dbSNP
rs767635441 275 dbSNP
rs1311950718 277 dbSNP
rs1223940941 280 dbSNP
rs943859329 282 dbSNP
rs1366477626 286 dbSNP
rs886973870 299 dbSNP
rs773831651 300 dbSNP
rs1205372183 303 dbSNP
rs73891584 304 dbSNP
rs548697774 321 dbSNP
rs1187378612 325 dbSNP
rs189298613 326 dbSNP
rs1196006594 340 dbSNP
rs149231102 342 dbSNP
rs1055084210 343 dbSNP
rs1159430346 345 dbSNP
rs1387398531 347 dbSNP
rs973395981 357 dbSNP
rs772766304 358 dbSNP
rs1297456460 366 dbSNP
rs1395253838 371 dbSNP
rs1303182415 372 dbSNP
rs1443038305 375 dbSNP
rs1362154977 376 dbSNP
rs1299034776 399 dbSNP
rs537079407 399 dbSNP
rs150596217 403 dbSNP
rs868522460 403 dbSNP
rs1424795925 406 dbSNP
rs1280991258 410 dbSNP
rs950061995 411 dbSNP
rs1207602448 413 dbSNP
rs113540689 418 dbSNP
rs1189527035 421 dbSNP
rs917313229 425 dbSNP
rs926705294 426 dbSNP
rs982618683 437 dbSNP
rs970867167 442 dbSNP
rs1265875790 444 dbSNP
rs757440737 445 dbSNP
rs1433027003 448 dbSNP
rs951253426 449 dbSNP
rs1365799785 451 dbSNP
rs769145108 457 dbSNP
rs570317673 458 dbSNP
rs1418677895 475 dbSNP
rs1463021842 486 dbSNP
rs1291785699 493 dbSNP
rs958240591 496 dbSNP
rs1217042912 497 dbSNP
rs11550121 506 dbSNP
rs552397512 509 dbSNP
rs996500067 511 dbSNP
rs962649860 516 dbSNP
rs1276109464 517 dbSNP
rs1018175597 518 dbSNP
rs1227426985 519 dbSNP
rs899508682 521 dbSNP
rs1293467466 526 dbSNP
rs1336394174 527 dbSNP
rs1019344692 530 dbSNP
rs1006493908 533 dbSNP
rs1277031388 537 dbSNP
rs1397994774 540 dbSNP
rs1488422047 544 dbSNP
rs1007957815 545 dbSNP
rs145398647 546 dbSNP
rs145864864 547 dbSNP
rs1181732106 548 dbSNP
rs1447079206 554 dbSNP
rs780661760 555 dbSNP
rs1476263881 559 dbSNP
rs480668 561 dbSNP
rs746739809 563 dbSNP
rs370347642 564 dbSNP
rs898380035 565 dbSNP
rs1169529469 568 dbSNP
rs1368488905 571 dbSNP
rs1054629353 577 dbSNP
rs936203761 577 dbSNP
rs1356950581 585 dbSNP
rs1393833001 592 dbSNP
rs1430007976 594 dbSNP
rs1311424393 598 dbSNP
rs777558069 602 dbSNP
rs758651914 603 dbSNP
rs1044685667 623 dbSNP
rs1204875092 624 dbSNP
rs1258550841 626 dbSNP
rs116235341 632 dbSNP
rs1264555948 633 dbSNP
rs115206658 634 dbSNP
rs1483103424 636 dbSNP
rs1429140333 648 dbSNP
rs982215820 649 dbSNP
rs1388231749 651 dbSNP
rs762602010 653 dbSNP
rs1173996533 656 dbSNP
rs913995044 657 dbSNP
rs1464246996 661 dbSNP
rs1323809480 674 dbSNP
rs988268315 675 dbSNP
rs1362041582 680 dbSNP
rs1210442294 681 dbSNP
rs1383406273 685 dbSNP
rs920709095 689 dbSNP
rs1363620549 690 dbSNP
rs576655562 693 dbSNP
rs958209341 698 dbSNP
rs1256861911 699 dbSNP
rs1208301879 707 dbSNP
rs1216317272 713 dbSNP
rs925528052 715 dbSNP
rs775363756 716 dbSNP
rs1210645429 722 dbSNP
rs963725954 723 dbSNP
rs1448823606 730 dbSNP
rs1395417769 731 dbSNP
rs1194125473 734 dbSNP
rs1376638087 743 dbSNP
rs1431165252 747 dbSNP
rs985357171 749 dbSNP
rs955008949 751 dbSNP
rs1454942228 753 dbSNP
rs11550120 760 dbSNP
rs1010357401 761 dbSNP
rs1435042062 762 dbSNP
rs1007926531 775 dbSNP
rs891537572 788 dbSNP
rs1033207073 790 dbSNP
rs866384592 791 dbSNP
rs1000352863 797 dbSNP
rs1464181305 801 dbSNP
rs1374889976 814 dbSNP
rs1210778207 815 dbSNP
rs1171671573 816 dbSNP
rs1464449468 825 dbSNP
rs1423754418 826 dbSNP
rs140245602 834 dbSNP
rs564927342 834 dbSNP
rs1408320153 835 dbSNP
rs1473389347 835 dbSNP
rs896107788 837 dbSNP
rs1025351997 844 dbSNP
rs1327242679 847 dbSNP
rs1461478861 861 dbSNP
rs1352098495 866 dbSNP
rs995278213 874 dbSNP
rs929325899 877 dbSNP
rs898336668 880 dbSNP
rs187234499 884 dbSNP
rs1055703747 886 dbSNP
rs532842986 888 dbSNP
rs1230473481 894 dbSNP
rs1286609004 898 dbSNP
rs1328655731 900 dbSNP
rs1233959847 906 dbSNP
rs1292003224 911 dbSNP
rs1001881886 913 dbSNP
rs1196173688 919 dbSNP
rs905184487 924 dbSNP
rs1233270526 929 dbSNP
rs1179576610 931 dbSNP
rs1483881164 931 dbSNP
rs1250612343 934 dbSNP
rs941168958 939 dbSNP
rs911063743 943 dbSNP
rs1404119538 944 dbSNP
rs1481305371 946 dbSNP
rs1251407028 947 dbSNP
rs1371559590 947 dbSNP
rs1412054962 952 dbSNP
rs1306463851 957 dbSNP
rs985306259 958 dbSNP
rs1243901139 961 dbSNP
rs955290978 964 dbSNP
rs1354282910 967 dbSNP
rs1227685762 968 dbSNP
rs1273545999 969 dbSNP
rs1344134610 970 dbSNP
rs922558058 971 dbSNP
rs1319860973 979 dbSNP
rs757613073 981 dbSNP
rs753966169 983 dbSNP
rs1485811630 986 dbSNP
rs764205255 992 dbSNP
rs1189132256 994 dbSNP
rs1046395896 997 dbSNP
rs114308533 998 dbSNP
rs1246520434 1011 dbSNP
rs1383775054 1013 dbSNP
rs1308861072 1018 dbSNP
rs1391307093 1018 dbSNP
rs758922943 1025 dbSNP
rs1432066642 1034 dbSNP
rs955923956 1035 dbSNP
rs1370301912 1039 dbSNP
rs1415282711 1041 dbSNP
rs1336342890 1042 dbSNP
rs1338785159 1044 dbSNP
rs535072753 1044 dbSNP
rs1298315653 1048 dbSNP
rs913962933 1050 dbSNP
rs1226027413 1057 dbSNP
rs1296623382 1068 dbSNP
rs1398651695 1069 dbSNP
rs146651021 1078 dbSNP
rs936807709 1079 dbSNP
rs1215853129 1081 dbSNP
rs565485034 1087 dbSNP
rs1451915264 1092 dbSNP
rs557366488 1096 dbSNP
rs537788550 1097 dbSNP
rs17595582 1099 dbSNP
rs767517964 1100 dbSNP
rs1389962386 1105 dbSNP
rs964681492 1109 dbSNP
rs1165836849 1110 dbSNP
rs1174605125 1114 dbSNP
rs1400323227 1116 dbSNP
rs912823746 1133 dbSNP
rs1414029742 1136 dbSNP
rs1445659578 1137 dbSNP
rs1380110221 1141 dbSNP
rs11457413 1146 dbSNP
rs202158872 1146 dbSNP
rs397968746 1146 dbSNP
rs201135676 1147 dbSNP
rs986392244 1152 dbSNP
rs951071001 1159 dbSNP
rs1296691318 1167 dbSNP
rs759218274 1169 dbSNP
rs1331534268 1173 dbSNP
rs796538410 1176 dbSNP
rs6733 1186 dbSNP
rs1037757443 1188 dbSNP
rs1223957463 1191 dbSNP
rs766001310 1195 dbSNP
rs1293907181 1198 dbSNP
rs943460640 1199 dbSNP
rs1207394218 1201 dbSNP
rs543163158 1204 dbSNP
rs910676368 1207 dbSNP
rs771769138 1215 dbSNP
rs71323759 1217 dbSNP
rs1376176706 1218 dbSNP
rs1176459262 1231 dbSNP
rs1477833848 1236 dbSNP
rs1160103702 1237 dbSNP
rs143276925 1241 dbSNP
rs1001383458 1246 dbSNP
rs1319873477 1248 dbSNP
rs534023954 1254 dbSNP
rs1237086365 1258 dbSNP
rs566629394 1260 dbSNP
rs1289761049 1268 dbSNP
rs907074213 1268 dbSNP
rs772856167 1269 dbSNP
rs1227236269 1270 dbSNP
rs140892545 1272 dbSNP
rs1357635904 1278 dbSNP
rs955696127 1281 dbSNP
rs892497988 1292 dbSNP
rs1451324362 1311 dbSNP
rs150995327 1313 dbSNP
rs1052499331 1318 dbSNP
rs531900917 1319 dbSNP
rs1360215232 1326 dbSNP
rs1369089225 1328 dbSNP
rs141985155 1329 dbSNP
rs936788621 1349 dbSNP
rs1389754637 1353 dbSNP
rs568460408 1355 dbSNP
rs1455009006 1356 dbSNP
rs1348220763 1360 dbSNP
rs6734 1361 dbSNP
rs1040245209 1362 dbSNP
rs181951133 1385 dbSNP
rs142603103 1396 dbSNP
rs747689455 1398 dbSNP
rs1430997259 1401 dbSNP
rs1359240809 1411 dbSNP
rs960213128 1413 dbSNP
rs1482214340 1418 dbSNP
rs188752682 1420 dbSNP
rs1176782144 1431 dbSNP
rs780527263 1433 dbSNP
rs987027184 1441 dbSNP
rs1199982128 1446 dbSNP
rs1425565497 1447 dbSNP
rs527901940 1452 dbSNP
rs1487931556 1455 dbSNP
rs929632123 1456 dbSNP
rs775830275 1461 dbSNP
rs1367807173 1467 dbSNP
rs1430226628 1469 dbSNP
rs1170220376 1477 dbSNP
rs1061525 1479 dbSNP
rs1061526 1481 dbSNP
rs1368430671 1482 dbSNP
rs1428716992 1483 dbSNP
rs1302996126 1485 dbSNP
rs184367781 1487 dbSNP
rs1206747483 1494 dbSNP
rs1393773625 1494 dbSNP
rs899126904 1497 dbSNP
rs77594531 1499 dbSNP
rs73891582 1502 dbSNP
rs1300290384 1509 dbSNP
rs1232838383 1511 dbSNP
rs867300603 1519 dbSNP
rs1340411130 1522 dbSNP
rs1204100232 1523 dbSNP
rs555732122 1524 dbSNP
rs1256806276 1539 dbSNP
rs1284969324 1541 dbSNP
rs1034105268 1543 dbSNP
rs1007550722 1545 dbSNP
rs980317892 1546 dbSNP
rs372743158 1550 dbSNP
rs1450040685 1553 dbSNP
rs1190382909 1557 dbSNP
rs1147241 1560 dbSNP
rs1448636448 1563 dbSNP
rs1176403902 1566 dbSNP
rs1406024909 1577 dbSNP
rs1024212728 1578 dbSNP
rs1010179196 1581 dbSNP
rs192255298 1583 dbSNP
rs77387349 1586 dbSNP
rs868246534 1587 dbSNP
rs1384313070 1594 dbSNP
rs1323061483 1605 dbSNP
rs1363551793 1605 dbSNP
rs796806877 1606 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' cuuguaUUGUGCCUAUUGGAGa 5'
                ||: |   ||||||| 
Target 5' ucugugAAUUC---UAACCUCu 3'
8 - 26
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000447325.1 | 3UTR | UUUGUUUUCUGUGAAUUCUAACCUCUAAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
91 hsa-miR-655-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT080691 KIAA1468 KIAA1468 2 2
MIRT095086 SEC24A SEC24 homolog A, COPII coat complex component 2 4
MIRT122450 SMIM13 small integral membrane protein 13 2 2
MIRT214635 SMAD5 SMAD family member 5 2 4
MIRT268267 CCND1 cyclin D1 2 2
MIRT312418 GRPEL2 GrpE like 2, mitochondrial 2 2
MIRT329008 DSTN destrin, actin depolymerizing factor 2 2
MIRT329824 PDCD4 programmed cell death 4 2 4
MIRT389635 LRRC58 leucine rich repeat containing 58 2 6
MIRT443969 FAM198B family with sequence similarity 198 member B 2 2
MIRT444080 C12orf73 chromosome 12 open reading frame 73 2 2
MIRT444886 TMEM196 transmembrane protein 196 2 2
MIRT445506 CRNKL1 crooked neck pre-mRNA splicing factor 1 2 4
MIRT446292 ACSL3 acyl-CoA synthetase long chain family member 3 2 2
MIRT446462 THAP1 THAP domain containing 1 2 2
MIRT446472 THUMPD3 THUMP domain containing 3 2 2
MIRT447413 MED21 mediator complex subunit 21 2 2
MIRT447491 KIAA1715 lunapark, ER junction formation factor 2 2
MIRT448965 CDADC1 cytidine and dCMP deaminase domain containing 1 2 2
MIRT449602 INIP INTS3 and NABP interacting protein 2 2
MIRT449607 PRPF4 pre-mRNA processing factor 4 2 2
MIRT449737 TAB2 TGF-beta activated kinase 1/MAP3K7 binding protein 2 2 2
MIRT451668 KRT8 keratin 8 2 4
MIRT452424 QDPR quinoid dihydropteridine reductase 2 2
MIRT455187 AGTRAP angiotensin II receptor associated protein 2 2
MIRT456059 SLC25A28 solute carrier family 25 member 28 2 2
MIRT456488 SERAC1 serine active site containing 1 2 2
MIRT456631 ARMCX6 armadillo repeat containing, X-linked 6 2 2
MIRT459621 SLC25A33 solute carrier family 25 member 33 2 2
MIRT461162 SLC11A2 solute carrier family 11 member 2 2 4
MIRT461990 PACSIN1 protein kinase C and casein kinase substrate in neurons 1 2 2
MIRT463149 ZNF385A zinc finger protein 385A 2 4
MIRT463465 ZC3HAV1L zinc finger CCCH-type containing, antiviral 1 like 2 2
MIRT463801 XPOT exportin for tRNA 2 2
MIRT464010 WDR26 WD repeat domain 26 2 2
MIRT465302 TRIB1 tribbles pseudokinase 1 2 2
MIRT468837 RRM2 ribonucleotide reductase regulatory subunit M2 2 2
MIRT469132 RNF126 ring finger protein 126 2 2
MIRT469244 RHOB ras homolog family member B 2 2
MIRT472414 NCKAP1 NCK associated protein 1 2 2
MIRT472432 NCBP2 nuclear cap binding protein subunit 2 2 2
MIRT472808 MTMR12 myotubularin related protein 12 2 2
MIRT477893 DVL3 dishevelled segment polarity protein 3 2 4
MIRT477963 DPM2 dolichyl-phosphate mannosyltransferase subunit 2, regulatory 2 2
MIRT479258 CHSY1 chondroitin sulfate synthase 1 2 2
MIRT479718 CCNF cyclin F 2 2
MIRT480231 C9orf41 carnosine N-methyltransferase 1 2 2
MIRT482600 ABHD14B abhydrolase domain containing 14B 2 2
MIRT483096 TFPI tissue factor pathway inhibitor 2 2
MIRT484644 TBC1D5 TBC1 domain family member 5 2 4
MIRT488899 CLDND1 claudin domain containing 1 2 2
MIRT491954 VPS52 VPS52, GARP complex subunit 2 2
MIRT496937 LBR lamin B receptor 2 2
MIRT498546 TMEM30B transmembrane protein 30B 2 2
MIRT501778 NRBF2 nuclear receptor binding factor 2 2 6
MIRT516286 DBT dihydrolipoamide branched chain transacylase E2 2 2
MIRT516351 GABPB1 GA binding protein transcription factor beta subunit 1 2 2
MIRT516751 ZNF100 zinc finger protein 100 2 2
MIRT517939 ZNF431 zinc finger protein 431 2 4
MIRT518295 ZNF514 zinc finger protein 514 2 4
MIRT518515 CASP10 caspase 10 2 2
MIRT519017 NOA1 nitric oxide associated 1 2 2
MIRT519171 SCO1 SCO1, cytochrome c oxidase assembly protein 2 2
MIRT519470 SPTLC2 serine palmitoyltransferase long chain base subunit 2 2 2
MIRT521029 SLC30A5 solute carrier family 30 member 5 2 2
MIRT521251 SAMD8 sterile alpha motif domain containing 8 2 2
MIRT521682 PRKAR2A protein kinase cAMP-dependent type II regulatory subunit alpha 2 2
MIRT529386 SKP1 S-phase kinase associated protein 1 2 2
MIRT545507 NAP1L1 nucleosome assembly protein 1 like 1 2 2
MIRT549655 RSL1D1 ribosomal L1 domain containing 1 2 2
MIRT551041 CTSB cathepsin B 2 4
MIRT551441 ZNF490 zinc finger protein 490 2 4
MIRT554778 RHEBP1 RHEB pseudogene 1 2 4
MIRT565793 SEC14L5 SEC14 like lipid binding 5 2 2
MIRT566727 MSL2 MSL complex subunit 2 2 2
MIRT574668 HNRNPDL heterogeneous nuclear ribonucleoprotein D like 2 2
MIRT610128 DENND5B DENN domain containing 5B 2 2
MIRT624919 FBXW2 F-box and WD repeat domain containing 2 2 2
MIRT641830 TRIM71 tripartite motif containing 71 2 2
MIRT662165 IFNAR2 interferon alpha and beta receptor subunit 2 2 2
MIRT667150 NRXN3 neurexin 3 2 2
MIRT689085 ADNP2 ADNP homeobox 2 2 2
MIRT696322 DCAF15 DDB1 and CUL4 associated factor 15 2 2
MIRT699062 SNX4 sorting nexin 4 2 2
MIRT703229 GOLGA1 golgin A1 2 2
MIRT705743 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT706087 HNRNPU heterogeneous nuclear ribonucleoprotein U 2 2
MIRT709288 MAPK8IP2 mitogen-activated protein kinase 8 interacting protein 2 2 2
MIRT711457 RNF145 ring finger protein 145 2 2
MIRT714708 PPP3CC protein phosphatase 3 catalytic subunit gamma 2 2
MIRT719871 CYP4F11 cytochrome P450 family 4 subfamily F member 11 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-655 Gefitinib approved 123631 Quantitative real-time PCR lung adenocarcinoma cells 24258346 2014 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-655 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-mir-655 Androstenedione 6128 NSC9563 resistant cell line (MCF-7)
hsa-mir-655 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-655-5p Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-655-5p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-655-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-655-5p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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