miRTarBase - #MIRT473123


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pre-miRNA Information
pre-miRNA hsa-mir-552   
Genomic Coordinates chr1: 34669599 - 34669694
Synonyms MIRN552, hsa-mir-552, MIR552
Description Homo sapiens miR-552 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-552-5p
Sequence 25| GUUUAACCUUUUGCCUGUUGG |45
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs76067517 2 dbSNP
rs1395509888 7 dbSNP
rs766113217 8 dbSNP
rs1390014269 9 dbSNP
rs763407724 13 dbSNP
rs921530704 15 dbSNP
rs1191461120 18 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol MLLT10   
Synonyms AF10
Description MLLT10, histone lysine methyltransferase DOT1L cofactor
Transcript NM_004641   
Expression
Putative miRNA Targets on MLLT10
3'UTR of MLLT10
(miRNA target sites are highlighted)		 
>MLLT10|NM_004641|3'UTR
   1 CAAGACTTAGTGATAAAACTGGGCCTGTAGCTCAAGAGAAAAGTTGACACCTGAGAAACATCTAGAAATTGCCTATCCTG
  81 CTGTTCTAGCACTTCATCTGGCTGCCTTTGCAGTCCTTTTACTACAGCTATGAAGAAACGCAACAAGAAACTCAATGCAC
 161 AACAAAGGATTAATTGCTGCAAGGACATTCTTGTAAGGCTTTGATTAGTTTTCTTGTTGCTTTGTTGCACTGAAATGGAA
 241 TTCCCATGCCCCTACCCCTTACCCCAGTTTTTTGAACATGGAAAGAAAATTTAATAACTTTTTAAAGTGACATAATTTAC
 321 ATGCAATATGTTTATCAACTCAAGAATTTAATATAGTTGGTACACAACTAGTTTTGTTTATAAATTGGAGATGCAAATAG
 401 CAAAACTAAATACTTGCTCCATTTACAAACTACTTGATTTTATTGTACAAGTTGAAATATGCTCTTTTGTTTGGGTTACA
 481 GTATGCTTGCTCTAAGTCAAATTCCAAGGAACTAATTTCTTCTCCTGGAGTTGCATTGATTCAGTATTACAAATATATAG
 561 CACATCACCTGGGACTTGGCAATCTTTGTTAAAAAAAAATTTCCTTTCTAATGGGATTTGGCCAATTTTGGTAATGAAGT
 641 TAGGATGGTAATGTCTGCATCTGCTAAAGGTAATTTTCTTTTGAGAATTGCTTTCTTTAGTGTTAAGACCTACTCATATT
 721 TTGAAGAAATCTTGAGTTAAGTGAGTTCTGAGGCTGCTGGGGGAACCAGATCAATTCAAAGCTAAATACTTCTTTCAGAA
 801 AGGGGCCACTGTGGAAAGTGCTGGTGGGGTTTGCCCTTGATCAAGTGCCTCCATTGTGCTGCAAGGGCTGTAGACAGCAG
 881 GGTGGGACAGTCAGTCCTCCGAGCAGCAGGAATCATCCCGTCACCTGCAGCCTTCCCATGCTTCCGCCTTTATTCAGAAC
 961 TTTCTGTGCCACTGTAGATAGCTCAGGCAAAACTATTACCTGGGTATTTATCCACTAATGAGTCACAAGAAAAGGAGTGG
1041 ATTTGGTAAGAATAGAGATTTGTTTTATTTAAACCACTTCCCATTACTGACCATTAAAAGCTCACCACTAGAGTTCCTGA
1121 AACAGGTGAAACCTGTATGACAGCCCTTCCACTTTGGGGAGCCACGCTTTTGATGTGACAGTACCGCAGAGTGATTCCCC
1201 CACTGAGGATGTCATCATCAAACTCTTCTTTGGTGTGTGAATTATTAGTGGAAAAGACCCAGCTGTAATTAGACCTCCAC
1281 TGTGTACTTAGCTGGAAGAACATGTTAATTCTGCAATATGTTTCTTGGTTAAACATTGCACAGTTCTTACCTCATTTCTG
1361 TAAATAAAGTTTTGTGAATCTGTTTTGTATTGTGACAAATTCATAAGATAACATTGATATTTTGATTTGTAATATTTCTA
1441 ATTGGTAGATTTAATTGAAAAGTAAAATTAATTTATTTTTATATGTTCAGGGGAATTTTAAAGTCAAATCTTTTGTAGAT
1521 AATTTAAAAAATCAGTGTGGTTTATTTTACTTATTTAACCCACTGGTTGTTATTCTGTAACAGTTTGTATAAATGGTAAA
1601 TTTTGAATGTGTTGTTATTTTACCTAGATGTAAAATTCCACATGTATTAAAATGTACAAAATGTTTTGTTAATAAAATTT
1681 AATAATGTTTATAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' gguuguccguuuuCCAAUUUg 5'
                       ||||||| 
Target 5' caatatgtttcttGGTTAAAc 3'
 1314 - 1334 140.00 -10.40
2 
miRNA  3' gguugucCGUUUUCCAAUUUg 5'
                 | || |||| ||| 
Target 5' agttcctGAAACAGGTGAAAc 3'
 1112 - 1132 122.00 -7.29
3 
miRNA  3' gguuguccguuuucCAAUUUg 5'
                        |||||| 
Target 5' acttggcaatctttGTTAAAa 3'
 574 - 594 120.00 -7.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30759406 112 COSMIC
COSN18178247 227 COSMIC
COSN1116785 538 COSMIC
COSN15479022 644 COSMIC
COSN25162647 1195 COSMIC
COSN19468877 1389 COSMIC
COSN16811332 1392 COSMIC
COSN18269560 1562 COSMIC
COSN18432882 1680 COSMIC
COSM8696198 1705 COSMIC
COSM7527695 1707 COSMIC
COSM220279 1710 COSMIC
COSM6877767 1720 COSMIC
COSM9261393 1720 COSMIC
COSM5958037 1727 COSMIC
COSM9521748 1728 COSMIC
COSM9247031 1741 COSMIC
COSM6886652 1746 COSMIC
COSM7232456 1750 COSMIC
COSN31597249 1755 COSMIC
COSN30132508 1774 COSMIC
COSN30464206 1799 COSMIC
COSN30455042 1809 COSMIC
COSN30534790 1871 COSMIC
COSN30190255 1905 COSMIC
COSN24303305 1920 COSMIC
COSN30162904 1949 COSMIC
COSN31521061 1988 COSMIC
COSN31524138 2117 COSMIC
COSN20106959 2302 COSMIC
COSN22464938 2545 COSMIC
COSN32057160 2648 COSMIC
COSN1482017 2825 COSMIC
COSN31562743 2869 COSMIC
COSN31515590 3001 COSMIC
COSN31522785 3315 COSMIC
COSN30543613 3355 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1227192699 2 dbSNP
rs1277315687 11 dbSNP
rs1321597223 16 dbSNP
rs370009272 19 dbSNP
rs372590887 22 dbSNP
rs1289075867 25 dbSNP
rs754260894 27 dbSNP
rs1327425364 28 dbSNP
rs1393718592 28 dbSNP
rs755355424 29 dbSNP
rs779302137 30 dbSNP
rs752842817 31 dbSNP
rs1468588778 33 dbSNP
rs958755511 37 dbSNP
rs1309089608 40 dbSNP
rs964918860 40 dbSNP
rs1370337365 42 dbSNP
rs1473406341 43 dbSNP
rs777709609 44 dbSNP
rs377085125 46 dbSNP
rs369738928 47 dbSNP
rs1431976385 48 dbSNP
rs1309043435 49 dbSNP
rs781037094 50 dbSNP
rs1408884735 51 dbSNP
rs1264867243 53 dbSNP
rs141742175 57 dbSNP
rs1021562790 58 dbSNP
rs1201482781 64 dbSNP
rs968409521 73 dbSNP
rs1467823356 78 dbSNP
rs979366182 79 dbSNP
rs1022919575 83 dbSNP
rs1313726390 89 dbSNP
rs923814073 92 dbSNP
rs935196553 94 dbSNP
rs1241297430 95 dbSNP
rs978603511 98 dbSNP
rs1336686302 101 dbSNP
rs564275472 113 dbSNP
rs924023263 126 dbSNP
rs1289930526 132 dbSNP
rs767432584 134 dbSNP
rs373936458 140 dbSNP
rs752839365 142 dbSNP
rs1298644352 150 dbSNP
rs34267123 151 dbSNP
rs948008963 159 dbSNP
rs1313428005 160 dbSNP
rs370883246 161 dbSNP
rs543659129 166 dbSNP
rs1384487418 167 dbSNP
rs1181717879 169 dbSNP
rs1273475331 172 dbSNP
rs1446204240 172 dbSNP
rs1189453088 180 dbSNP
rs919778077 181 dbSNP
rs1039425289 201 dbSNP
rs1282455348 204 dbSNP
rs1206932343 208 dbSNP
rs544831454 210 dbSNP
rs372733852 211 dbSNP
rs1244497196 217 dbSNP
rs930939135 219 dbSNP
rs1481271827 225 dbSNP
rs1191105405 227 dbSNP
rs1047313822 228 dbSNP
rs549529544 230 dbSNP
rs777916559 237 dbSNP
rs899491588 242 dbSNP
rs1400749295 243 dbSNP
rs1174294378 245 dbSNP
rs192028639 249 dbSNP
rs1426401182 252 dbSNP
rs1389806636 257 dbSNP
rs1428039389 258 dbSNP
rs1474324381 262 dbSNP
rs77555022 264 dbSNP
rs1354892229 265 dbSNP
rs1195665227 266 dbSNP
rs1447644197 270 dbSNP
rs1220354945 275 dbSNP
rs1291218804 275 dbSNP
rs1435744681 276 dbSNP
rs1291731293 284 dbSNP
rs1214307243 287 dbSNP
rs1360356924 289 dbSNP
rs1271546420 293 dbSNP
rs1431083080 299 dbSNP
rs751821892 305 dbSNP
rs1300684836 310 dbSNP
rs757221719 316 dbSNP
rs1012952673 317 dbSNP
rs1366074221 322 dbSNP
rs1169705323 329 dbSNP
rs1407981227 330 dbSNP
rs1441048444 338 dbSNP
rs1421465441 340 dbSNP
rs1296167929 341 dbSNP
rs1339698206 342 dbSNP
rs1021615997 344 dbSNP
rs968756804 354 dbSNP
rs977801131 356 dbSNP
rs1490869920 357 dbSNP
rs904035632 359 dbSNP
rs1275637075 364 dbSNP
rs999668161 367 dbSNP
rs1031510378 375 dbSNP
rs1030930736 380 dbSNP
rs960819372 386 dbSNP
rs1308455618 395 dbSNP
rs551705152 396 dbSNP
rs956821830 415 dbSNP
rs986656328 420 dbSNP
rs764344435 423 dbSNP
rs1023622794 432 dbSNP
rs969344055 434 dbSNP
rs571766697 436 dbSNP
rs974415625 442 dbSNP
rs754158734 456 dbSNP
rs1428804306 461 dbSNP
rs1170703489 465 dbSNP
rs1420421885 466 dbSNP
rs919826287 468 dbSNP
rs1426031634 474 dbSNP
rs781285020 482 dbSNP
rs537353967 483 dbSNP
rs1235125182 487 dbSNP
rs1404558038 488 dbSNP
rs557608706 493 dbSNP
rs1260846554 495 dbSNP
rs1312264804 497 dbSNP
rs1162386012 502 dbSNP
rs982598409 504 dbSNP
rs77553367 513 dbSNP
rs919629128 515 dbSNP
rs943802364 516 dbSNP
rs745759152 519 dbSNP
rs1436567965 520 dbSNP
rs1270410905 524 dbSNP
rs1334953404 526 dbSNP
rs1377936397 535 dbSNP
rs1359967506 539 dbSNP
rs1158418050 549 dbSNP
rs1039458146 555 dbSNP
rs1410762527 556 dbSNP
rs756096578 561 dbSNP
rs151104598 567 dbSNP
rs1444389114 571 dbSNP
rs938921207 577 dbSNP
rs1057271593 580 dbSNP
rs894640774 581 dbSNP
rs1205976461 582 dbSNP
rs1337636273 589 dbSNP
rs1013005173 591 dbSNP
rs535067419 600 dbSNP
rs554907242 601 dbSNP
rs370805431 602 dbSNP
rs1195336726 606 dbSNP
rs1032071412 607 dbSNP
rs1472564937 612 dbSNP
rs956686133 616 dbSNP
rs778917856 617 dbSNP
rs1008138424 623 dbSNP
rs1245227714 623 dbSNP
rs867698191 624 dbSNP
rs1419726147 630 dbSNP
rs1380111461 632 dbSNP
rs963873944 632 dbSNP
rs975221735 634 dbSNP
rs1451695710 636 dbSNP
rs1158323878 637 dbSNP
rs1347102593 638 dbSNP
rs1159783692 641 dbSNP
rs1424514464 657 dbSNP
rs1383942421 659 dbSNP
rs541072092 662 dbSNP
rs557676081 664 dbSNP
rs982495290 670 dbSNP
rs1260564955 683 dbSNP
rs185340521 686 dbSNP
rs908202345 689 dbSNP
rs1486553728 698 dbSNP
rs938971885 701 dbSNP
rs779818037 703 dbSNP
rs190634715 707 dbSNP
rs1445314443 712 dbSNP
rs563554675 714 dbSNP
rs969376522 718 dbSNP
rs1306754899 731 dbSNP
rs974069758 734 dbSNP
rs1357745534 737 dbSNP
rs749093605 742 dbSNP
rs1234222803 744 dbSNP
rs529344121 757 dbSNP
rs1298828651 761 dbSNP
rs1027321370 762 dbSNP
rs1364206835 763 dbSNP
rs113329750 770 dbSNP
rs1372926166 773 dbSNP
rs1206997770 774 dbSNP
rs1285021609 775 dbSNP
rs1442104010 776 dbSNP
rs904627231 778 dbSNP
rs1259429085 779 dbSNP
rs1198020631 782 dbSNP
rs1489661926 784 dbSNP
rs1270931575 789 dbSNP
rs16921903 797 dbSNP
rs1229361529 800 dbSNP
rs79020526 800 dbSNP
rs920985818 801 dbSNP
rs747864880 807 dbSNP
rs947048927 808 dbSNP
rs1326089222 820 dbSNP
rs551813507 828 dbSNP
rs1387927228 830 dbSNP
rs1396416656 838 dbSNP
rs1158695275 839 dbSNP
rs890459505 843 dbSNP
rs902841985 851 dbSNP
rs1412468957 852 dbSNP
rs935626696 853 dbSNP
rs1175328610 858 dbSNP
rs4747437 861 dbSNP
rs1375615662 864 dbSNP
rs896677383 868 dbSNP
rs137946845 872 dbSNP
rs142483896 875 dbSNP
rs1019559822 876 dbSNP
rs1197295479 878 dbSNP
rs963928561 879 dbSNP
rs1458076040 881 dbSNP
rs996712130 887 dbSNP
rs1203333610 888 dbSNP
rs1321493681 888 dbSNP
rs1045136777 889 dbSNP
rs1349223666 890 dbSNP
rs1027216437 892 dbSNP
rs1335634380 893 dbSNP
rs1305546364 897 dbSNP
rs1449440324 901 dbSNP
rs1401556081 904 dbSNP
rs567635460 905 dbSNP
rs982934052 914 dbSNP
rs1241774143 918 dbSNP
rs1280269327 921 dbSNP
rs760088365 925 dbSNP
rs181933036 927 dbSNP
rs1469212483 930 dbSNP
rs1361960354 932 dbSNP
rs1282771087 934 dbSNP
rs765913002 935 dbSNP
rs372102321 941 dbSNP
rs775986182 942 dbSNP
rs951444087 950 dbSNP
rs1281021096 956 dbSNP
rs916190816 958 dbSNP
rs1004154411 959 dbSNP
rs1350110142 963 dbSNP
rs948953486 964 dbSNP
rs978990165 965 dbSNP
rs746561458 966 dbSNP
rs1314734379 968 dbSNP
rs934811303 968 dbSNP
rs761444662 971 dbSNP
rs1019517077 972 dbSNP
rs750380062 973 dbSNP
rs1334451255 980 dbSNP
rs1399589359 982 dbSNP
rs1249324302 985 dbSNP
rs548570241 987 dbSNP
rs1160373395 988 dbSNP
rs1053614637 993 dbSNP
rs890520193 994 dbSNP
rs1181471476 999 dbSNP
rs1182433680 1015 dbSNP
rs1376933093 1017 dbSNP
rs768093356 1029 dbSNP
rs944703755 1032 dbSNP
rs1039041493 1034 dbSNP
rs761004020 1034 dbSNP
rs921016928 1035 dbSNP
rs1218911709 1040 dbSNP
rs899774997 1040 dbSNP
rs11290537 1041 dbSNP
rs397845491 1041 dbSNP
rs565627658 1041 dbSNP
rs77377727 1042 dbSNP
rs1168402093 1044 dbSNP
rs868544040 1045 dbSNP
rs924325579 1047 dbSNP
rs1299434051 1048 dbSNP
rs200173766 1049 dbSNP
rs1004012157 1057 dbSNP
rs1161637551 1059 dbSNP
rs144655612 1061 dbSNP
rs1414346894 1067 dbSNP
rs537237192 1071 dbSNP
rs1167112761 1072 dbSNP
rs1475175868 1075 dbSNP
rs185731193 1085 dbSNP
rs189052764 1086 dbSNP
rs1488682905 1091 dbSNP
rs1268775938 1093 dbSNP
rs764524625 1107 dbSNP
rs1453678948 1109 dbSNP
rs1305685315 1110 dbSNP
rs959767964 1115 dbSNP
rs1214359759 1117 dbSNP
rs1052651574 1126 dbSNP
rs918137430 1134 dbSNP
rs992475325 1135 dbSNP
rs1344384707 1136 dbSNP
rs542896579 1142 dbSNP
rs1301213336 1146 dbSNP
rs1022582196 1149 dbSNP
rs1438440844 1156 dbSNP
rs1227930244 1159 dbSNP
rs368661856 1161 dbSNP
rs376888490 1161 dbSNP
rs747857090 1161 dbSNP
rs370048266 1172 dbSNP
rs751695806 1189 dbSNP
rs1421719278 1193 dbSNP
rs1478179782 1200 dbSNP
rs1428762406 1201 dbSNP
rs559795560 1203 dbSNP
rs970314927 1206 dbSNP
rs1196100529 1207 dbSNP
rs1247824871 1209 dbSNP
rs1204217019 1216 dbSNP
rs979431771 1219 dbSNP
rs926186621 1222 dbSNP
rs1048937316 1224 dbSNP
rs1266615521 1225 dbSNP
rs1280743397 1236 dbSNP
rs1220475869 1244 dbSNP
rs1449755885 1245 dbSNP
rs934841639 1246 dbSNP
rs1278930207 1254 dbSNP
rs76297276 1256 dbSNP
rs372309295 1267 dbSNP
rs912010009 1268 dbSNP
rs1333608233 1271 dbSNP
rs1019550081 1274 dbSNP
rs965249394 1278 dbSNP
rs1405636901 1280 dbSNP
rs1173979205 1291 dbSNP
rs540694250 1292 dbSNP
rs765432950 1292 dbSNP
rs75413817 1300 dbSNP
rs1374367944 1301 dbSNP
rs968939034 1302 dbSNP
rs1168817802 1303 dbSNP
rs1390699802 1304 dbSNP
rs1460321381 1305 dbSNP
rs1240342260 1307 dbSNP
rs1039094610 1308 dbSNP
rs978553475 1314 dbSNP
rs1371815202 1316 dbSNP
rs529565447 1320 dbSNP
rs565362727 1321 dbSNP
rs1312320081 1324 dbSNP
rs955743135 1336 dbSNP
rs1237948819 1343 dbSNP
rs1379025816 1343 dbSNP
rs930629336 1351 dbSNP
rs992416507 1354 dbSNP
rs1328371117 1364 dbSNP
rs1227923981 1365 dbSNP
rs916913384 1373 dbSNP
rs1301355971 1374 dbSNP
rs1467628596 1379 dbSNP
rs1205354750 1386 dbSNP
rs1158482508 1391 dbSNP
rs1418346985 1396 dbSNP
rs1382727045 1398 dbSNP
rs551008432 1400 dbSNP
rs1264603439 1401 dbSNP
rs1159588698 1403 dbSNP
rs180962995 1406 dbSNP
rs1283037789 1408 dbSNP
rs185632253 1410 dbSNP
rs1048794639 1413 dbSNP
rs1183299986 1419 dbSNP
rs1483290481 1421 dbSNP
rs888348760 1425 dbSNP
rs1213837460 1428 dbSNP
rs1464049860 1431 dbSNP
rs1355702037 1433 dbSNP
rs1045275639 1448 dbSNP
rs561096412 1450 dbSNP
rs1428718890 1452 dbSNP
rs1398075465 1459 dbSNP
rs1015360973 1467 dbSNP
rs1288316256 1468 dbSNP
rs931448272 1470 dbSNP
rs1362976307 1471 dbSNP
rs1194407858 1478 dbSNP
rs530333299 1479 dbSNP
rs887157045 1491 dbSNP
rs1013948753 1493 dbSNP
rs940006242 1493 dbSNP
rs1041104421 1499 dbSNP
rs1022635703 1505 dbSNP
rs1190822977 1511 dbSNP
rs759981166 1518 dbSNP
rs1489006934 1529 dbSNP
rs996790818 1534 dbSNP
rs1221731317 1549 dbSNP
rs772659585 1551 dbSNP
rs969697783 1553 dbSNP
rs1266930732 1554 dbSNP
rs1456800144 1556 dbSNP
rs978426925 1557 dbSNP
rs569608113 1564 dbSNP
rs956304930 1565 dbSNP
rs989409387 1575 dbSNP
rs190406351 1579 dbSNP
rs1279388186 1596 dbSNP
rs1386642184 1606 dbSNP
rs540032404 1611 dbSNP
rs565583674 1613 dbSNP
rs1458761914 1627 dbSNP
rs201543539 1632 dbSNP
rs796352065 1632 dbSNP
rs1328325404 1633 dbSNP
rs549180645 1643 dbSNP
rs1478508359 1645 dbSNP
rs868689706 1648 dbSNP
rs921974672 1653 dbSNP
rs1431322516 1655 dbSNP
rs745689641 1656 dbSNP
rs759448341 1656 dbSNP
rs769527187 1657 dbSNP
rs1208150864 1658 dbSNP
rs1341678099 1659 dbSNP
rs1244886275 1660 dbSNP
rs1283485652 1664 dbSNP
rs1357221221 1667 dbSNP
rs1230306594 1669 dbSNP
rs1275131872 1671 dbSNP
rs1482848238 1672 dbSNP
rs558427111 1673 dbSNP
rs138711023 1675 dbSNP
rs762512476 1676 dbSNP
rs768272858 1678 dbSNP
rs376356883 1679 dbSNP
rs141741524 1680 dbSNP
rs754348869 1684 dbSNP
rs749249629 1686 dbSNP
rs1232648245 1687 dbSNP
rs1390021479 1688 dbSNP
rs765227070 1689 dbSNP
rs758563736 1690 dbSNP
rs1403943122 1693 dbSNP
rs765667959 1694 dbSNP
rs1332981914 1696 dbSNP
rs1430729385 1697 dbSNP
rs753029380 1698 dbSNP
rs370562101 1700 dbSNP
rs373956199 1703 dbSNP
rs181589426 1706 dbSNP
rs757283683 1708 dbSNP
rs781125115 1709 dbSNP
rs534036232 1711 dbSNP
rs755973743 1712 dbSNP
rs901194141 1713 dbSNP
rs1379277106 1721 dbSNP
rs1257943194 1723 dbSNP
rs779703214 1726 dbSNP
rs756312975 1733 dbSNP
rs1365705512 1734 dbSNP
rs1241403610 1735 dbSNP
rs768201657 1738 dbSNP
rs1049674817 1743 dbSNP
rs1247952534 1747 dbSNP
rs1459217551 1751 dbSNP
rs774015443 1753 dbSNP
rs370292919 1754 dbSNP
rs771687809 1757 dbSNP
rs1466265255 1758 dbSNP
rs1343017945 1762 dbSNP
rs777318624 1765 dbSNP
rs116484775 1767 dbSNP
rs757789787 1774 dbSNP
rs763667849 1775 dbSNP
rs765753753 1775 dbSNP
rs775730413 1776 dbSNP
rs1321069892 1777 dbSNP
rs763310271 1778 dbSNP
rs764250942 1780 dbSNP
rs751752443 1781 dbSNP
rs1377143162 1782 dbSNP
rs751096215 1782 dbSNP
rs757374887 1786 dbSNP
rs1393782174 1789 dbSNP
rs1232894779 1790 dbSNP
rs557196032 1791 dbSNP
rs750421461 1792 dbSNP
rs756061791 1799 dbSNP
rs779978878 1800 dbSNP
rs1213516862 1801 dbSNP
rs144612417 1803 dbSNP
rs1483047381 1807 dbSNP
rs891618938 1809 dbSNP
rs1440121599 1816 dbSNP
rs1238995624 1818 dbSNP
rs1187175785 1819 dbSNP
rs1013981409 1825 dbSNP
rs1023982866 1828 dbSNP
rs1253199403 1833 dbSNP
rs1000297461 1838 dbSNP
rs1258270295 1840 dbSNP
rs1032661793 1842 dbSNP
rs956530651 1843 dbSNP
rs778790680 1844 dbSNP
rs1283234184 1845 dbSNP
rs1393531300 1849 dbSNP
rs1341910250 1853 dbSNP
rs1334195974 1856 dbSNP
rs1010485645 1858 dbSNP
rs747731200 1860 dbSNP
rs116086670 1863 dbSNP
rs974886064 1867 dbSNP
rs922026993 1869 dbSNP
rs1412881815 1870 dbSNP
rs1161246544 1872 dbSNP
rs952151591 1877 dbSNP
rs985233977 1879 dbSNP
rs953116063 1881 dbSNP
rs907860147 1882 dbSNP
rs1488032843 1885 dbSNP
rs940651606 1890 dbSNP
rs1036912010 1895 dbSNP
rs1299830070 1895 dbSNP
rs917140393 1896 dbSNP
rs1373907488 1900 dbSNP
rs1385764036 1902 dbSNP
rs1300585684 1903 dbSNP
rs1349661858 1909 dbSNP
rs1357972175 1911 dbSNP
rs1234552096 1912 dbSNP
rs1281574327 1913 dbSNP
rs1217457450 1916 dbSNP
rs1280010395 1922 dbSNP
rs1337846906 1922 dbSNP
rs949899947 1925 dbSNP
rs1044194313 1932 dbSNP
rs567796796 1933 dbSNP
rs1307286102 1935 dbSNP
rs1202794252 1943 dbSNP
rs553230940 1946 dbSNP
rs1393119775 1948 dbSNP
rs1481221163 1949 dbSNP
rs1190737243 1950 dbSNP
rs908732434 1954 dbSNP
rs940148766 1963 dbSNP
rs999946898 1969 dbSNP
rs771890041 1971 dbSNP
rs922647985 1973 dbSNP
rs1219780038 1975 dbSNP
rs891468724 1982 dbSNP
rs932643697 1984 dbSNP
rs1290127471 1985 dbSNP
rs747060114 1988 dbSNP
rs1259363836 1990 dbSNP
rs1050230780 1991 dbSNP
rs573188902 1992 dbSNP
rs1366771162 1997 dbSNP
rs1251205912 2006 dbSNP
rs534801613 2007 dbSNP
rs1273057358 2014 dbSNP
rs1009869068 2023 dbSNP
rs1331536414 2027 dbSNP
rs1330433370 2028 dbSNP
rs1389722803 2028 dbSNP
rs41299228 2032 dbSNP
rs1053021391 2037 dbSNP
rs1172860743 2037 dbSNP
rs902069518 2039 dbSNP
rs1014012309 2041 dbSNP
rs1172216701 2041 dbSNP
rs1479205133 2044 dbSNP
rs1253947882 2049 dbSNP
rs1355083455 2050 dbSNP
rs1456137132 2057 dbSNP
rs1239653905 2059 dbSNP
rs1457323495 2066 dbSNP
rs1311166001 2067 dbSNP
rs1276410094 2073 dbSNP
rs1220810366 2079 dbSNP
rs1323377017 2085 dbSNP
rs558650448 2088 dbSNP
rs905580810 2099 dbSNP
rs1001288640 2101 dbSNP
rs149994406 2101 dbSNP
rs1440915889 2103 dbSNP
rs1029158272 2106 dbSNP
rs575696904 2109 dbSNP
rs951732283 2110 dbSNP
rs1174052571 2111 dbSNP
rs1416601857 2112 dbSNP
rs1296430495 2115 dbSNP
rs1359366917 2116 dbSNP
rs1438269367 2117 dbSNP
rs1239603903 2120 dbSNP
rs1177492776 2124 dbSNP
rs1482726080 2129 dbSNP
rs544256269 2130 dbSNP
rs1006236525 2140 dbSNP
rs746577306 2141 dbSNP
rs561184233 2146 dbSNP
rs984898419 2147 dbSNP
rs1285267317 2152 dbSNP
rs1015381439 2154 dbSNP
rs962037479 2155 dbSNP
rs1311740197 2157 dbSNP
rs1224480201 2159 dbSNP
rs573966213 2163 dbSNP
rs917192680 2164 dbSNP
rs922765090 2167 dbSNP
rs1450335921 2181 dbSNP
rs1469890660 2184 dbSNP
rs1298182551 2185 dbSNP
rs954146119 2187 dbSNP
rs73594504 2197 dbSNP
rs372455208 2203 dbSNP
rs1383001889 2208 dbSNP
rs1241777204 2212 dbSNP
rs925971679 2218 dbSNP
rs533658686 2224 dbSNP
rs979945908 2225 dbSNP
rs935990928 2226 dbSNP
rs560826322 2229 dbSNP
rs935798995 2231 dbSNP
rs1489234756 2236 dbSNP
rs532662736 2237 dbSNP
rs1220586403 2238 dbSNP
rs949888474 2239 dbSNP
rs1310899129 2253 dbSNP
rs891518093 2254 dbSNP
rs551380694 2261 dbSNP
rs945710554 2265 dbSNP
rs1356251000 2271 dbSNP
rs1045579781 2272 dbSNP
rs41304605 2274 dbSNP
rs1363026989 2285 dbSNP
rs1289774493 2286 dbSNP
rs530632986 2288 dbSNP
rs1457752157 2290 dbSNP
rs1423240407 2291 dbSNP
rs147561617 2293 dbSNP
rs887454412 2293 dbSNP
rs1162706993 2294 dbSNP
rs1262381444 2298 dbSNP
rs902121998 2299 dbSNP
rs550687361 2303 dbSNP
rs770340262 2305 dbSNP
rs1461527850 2315 dbSNP
rs1487411235 2324 dbSNP
rs996421029 2327 dbSNP
rs1319249385 2328 dbSNP
rs559098835 2331 dbSNP
rs1216906242 2337 dbSNP
rs1257448637 2337 dbSNP
rs1015856435 2338 dbSNP
rs1386546209 2350 dbSNP
rs1366020496 2351 dbSNP
rs577562830 2355 dbSNP
rs961664197 2358 dbSNP
rs1432449023 2360 dbSNP
rs1029622808 2367 dbSNP
rs998433525 2367 dbSNP
rs1029867243 2369 dbSNP
rs1466769979 2373 dbSNP
rs1373551570 2375 dbSNP
rs1175347315 2376 dbSNP
rs1431373259 2376 dbSNP
rs1269129291 2378 dbSNP
rs1194050405 2385 dbSNP
rs1469041968 2386 dbSNP
rs78154192 2394 dbSNP
rs1006777339 2396 dbSNP
rs559926941 2397 dbSNP
rs1292004738 2398 dbSNP
rs962088531 2402 dbSNP
rs992142827 2403 dbSNP
rs1337536874 2404 dbSNP
rs1024930342 2410 dbSNP
rs971323016 2411 dbSNP
rs1233081434 2415 dbSNP
rs926029583 2418 dbSNP
rs761913585 2421 dbSNP
rs1442142054 2424 dbSNP
rs751501114 2425 dbSNP
rs1375656833 2428 dbSNP
rs191908321 2429 dbSNP
rs1392613444 2434 dbSNP
rs1396508490 2434 dbSNP
rs988731989 2434 dbSNP
rs1283623741 2441 dbSNP
rs2282395 2445 dbSNP
rs1218207473 2449 dbSNP
rs935869822 2452 dbSNP
rs1173995120 2457 dbSNP
rs1485228906 2465 dbSNP
rs950004104 2472 dbSNP
rs981311167 2484 dbSNP
rs1185466013 2489 dbSNP
rs538509781 2492 dbSNP
rs1251268173 2506 dbSNP
rs1199967216 2510 dbSNP
rs1482541883 2513 dbSNP
rs117330146 2517 dbSNP
rs945762897 2520 dbSNP
rs575222814 2521 dbSNP
rs1306625603 2524 dbSNP
rs1336005174 2528 dbSNP
rs1332883852 2529 dbSNP
rs1405165064 2530 dbSNP
rs1377170680 2535 dbSNP
rs1313466450 2540 dbSNP
rs887495686 2548 dbSNP
rs1401876992 2565 dbSNP
rs1040095493 2578 dbSNP
rs1358171126 2581 dbSNP
rs1414586845 2584 dbSNP
rs1471254510 2592 dbSNP
rs901515181 2597 dbSNP
rs940432724 2598 dbSNP
rs931594903 2601 dbSNP
rs1050716801 2603 dbSNP
rs141847522 2604 dbSNP
rs1415922836 2605 dbSNP
rs1207291372 2608 dbSNP
rs766473205 2612 dbSNP
rs1006417441 2614 dbSNP
rs1241964854 2619 dbSNP
rs150622664 2622 dbSNP
rs1225480378 2623 dbSNP
rs1036917791 2625 dbSNP
rs1338368776 2628 dbSNP
rs1007023768 2630 dbSNP
rs1033512234 2632 dbSNP
rs1385919226 2641 dbSNP
rs1162950899 2642 dbSNP
rs1459937539 2646 dbSNP
rs574727463 2648 dbSNP
rs183711518 2649 dbSNP
rs560454758 2651 dbSNP
rs1485998873 2654 dbSNP
rs969363513 2659 dbSNP
rs1195749609 2663 dbSNP
rs1002592015 2669 dbSNP
rs879339742 2671 dbSNP
rs971352368 2672 dbSNP
rs780750908 2674 dbSNP
rs1336505880 2677 dbSNP
rs532847124 2682 dbSNP
rs1217518551 2684 dbSNP
rs1338299412 2687 dbSNP
rs1271908553 2693 dbSNP
rs990023905 2698 dbSNP
rs1330370702 2699 dbSNP
rs913068893 2700 dbSNP
rs937174652 2703 dbSNP
rs1432457605 2707 dbSNP
rs984680611 2708 dbSNP
rs1165707431 2710 dbSNP
rs1465211038 2721 dbSNP
rs542382283 2722 dbSNP
rs940482509 2725 dbSNP
rs1476027320 2728 dbSNP
rs1246428407 2729 dbSNP
rs1036096882 2735 dbSNP
rs41299226 2740 dbSNP
rs975830425 2742 dbSNP
rs1415707576 2752 dbSNP
rs922990296 2756 dbSNP
rs1328788595 2758 dbSNP
rs1051352952 2761 dbSNP
rs932941502 2761 dbSNP
rs1272815725 2762 dbSNP
rs890002101 2763 dbSNP
rs931678901 2771 dbSNP
rs754992229 2780 dbSNP
rs1446121502 2781 dbSNP
rs564935640 2784 dbSNP
rs1444493842 2785 dbSNP
rs1033215058 2786 dbSNP
rs1410967454 2788 dbSNP
rs1280175326 2793 dbSNP
rs1172135164 2805 dbSNP
rs1050501384 2809 dbSNP
rs778538916 2823 dbSNP
rs1177698711 2834 dbSNP
rs530517958 2838 dbSNP
rs942272342 2840 dbSNP
rs1234057556 2842 dbSNP
rs1036567258 2844 dbSNP
rs1204642349 2851 dbSNP
rs1020301257 2869 dbSNP
rs1236203842 2873 dbSNP
rs971380188 2873 dbSNP
rs1270838190 2877 dbSNP
rs1439460613 2878 dbSNP
rs981370461 2882 dbSNP
rs1239619546 2883 dbSNP
rs1181967417 2888 dbSNP
rs752602500 2889 dbSNP
rs1013669186 2891 dbSNP
rs11012782 2892 dbSNP
rs1195114508 2894 dbSNP
rs985101874 2897 dbSNP
rs1436964967 2908 dbSNP
rs528416176 2909 dbSNP
rs1395250868 2914 dbSNP
rs1466894733 2916 dbSNP
rs1046484171 2929 dbSNP
rs1158435884 2946 dbSNP
rs1167657855 2947 dbSNP
rs909073192 2955 dbSNP
rs749694051 2959 dbSNP
rs961852109 2959 dbSNP
rs1472211762 2965 dbSNP
rs769451824 2970 dbSNP
rs1255311291 2977 dbSNP
rs971821765 2978 dbSNP
rs1485963732 2980 dbSNP
rs1284980974 2987 dbSNP
rs1213419451 2990 dbSNP
rs550725364 3001 dbSNP
rs922980391 3019 dbSNP
rs567383596 3024 dbSNP
rs140699186 3030 dbSNP
rs1291516133 3037 dbSNP
rs1393841920 3039 dbSNP
rs1356685581 3047 dbSNP
rs1297937091 3050 dbSNP
rs1002241022 3052 dbSNP
rs1032739969 3060 dbSNP
rs1305931652 3063 dbSNP
rs1346582898 3063 dbSNP
rs777512462 3068 dbSNP
rs910199460 3070 dbSNP
rs957351536 3072 dbSNP
rs1011914632 3076 dbSNP
rs1404396332 3080 dbSNP
rs546150394 3081 dbSNP
rs746664914 3081 dbSNP
rs942994783 3085 dbSNP
rs1262440198 3086 dbSNP
rs1184539995 3090 dbSNP
rs1486760886 3092 dbSNP
rs1226476719 3101 dbSNP
rs1268175242 3105 dbSNP
rs546776876 3106 dbSNP
rs1271299706 3108 dbSNP
rs1235251235 3109 dbSNP
rs1295567406 3110 dbSNP
rs1336078145 3110 dbSNP
rs779202977 3142 dbSNP
rs1289829494 3151 dbSNP
rs1364442825 3151 dbSNP
rs1272398253 3153 dbSNP
rs1435241672 3155 dbSNP
rs975882662 3158 dbSNP
rs566507766 3167 dbSNP
rs1461556254 3168 dbSNP
rs746209744 3168 dbSNP
rs1168325805 3169 dbSNP
rs768382815 3170 dbSNP
rs1192976254 3174 dbSNP
rs953229540 3175 dbSNP
rs1041788320 3176 dbSNP
rs985852085 3184 dbSNP
rs907337027 3195 dbSNP
rs1371684228 3208 dbSNP
rs1002906115 3209 dbSNP
rs538961004 3210 dbSNP
rs1034383670 3214 dbSNP
rs189631905 3217 dbSNP
rs568937064 3218 dbSNP
rs1172032078 3226 dbSNP
rs1327574460 3228 dbSNP
rs1394330877 3228 dbSNP
rs1459975022 3229 dbSNP
rs111965406 3230 dbSNP
rs11545814 3231 dbSNP
rs1391789531 3231 dbSNP
rs1463418124 3234 dbSNP
rs371289558 3235 dbSNP
rs1316046129 3238 dbSNP
rs1327986462 3239 dbSNP
rs1227817386 3240 dbSNP
rs919486170 3242 dbSNP
rs1194177371 3243 dbSNP
rs1332538521 3243 dbSNP
rs1481887365 3243 dbSNP
rs949568778 3244 dbSNP
rs1273241180 3246 dbSNP
rs1485372080 3249 dbSNP
rs971849532 3251 dbSNP
rs923096486 3253 dbSNP
rs554510935 3257 dbSNP
rs905312552 3263 dbSNP
rs1334828075 3268 dbSNP
rs1194796026 3270 dbSNP
rs1304185245 3271 dbSNP
rs1417830205 3276 dbSNP
rs938093816 3280 dbSNP
rs1053828458 3288 dbSNP
rs1432791023 3290 dbSNP
rs1167262428 3308 dbSNP
rs761388895 3312 dbSNP
rs1453064822 3319 dbSNP
rs1174049337 3321 dbSNP
rs1454840561 3325 dbSNP
rs936310438 3327 dbSNP
rs1179719980 3334 dbSNP
rs1387349335 3340 dbSNP
rs1421020392 3345 dbSNP
rs1054725767 3347 dbSNP
rs893799671 3353 dbSNP
rs1484987502 3355 dbSNP
rs1009546402 3360 dbSNP
rs1282853324 3364 dbSNP
rs574617238 3367 dbSNP
rs1212086284 3381 dbSNP
rs1020223305 3387 dbSNP
rs1349467844 3388 dbSNP
rs1312013007 3389 dbSNP
rs903087768 3390 dbSNP
rs1335764254 3392 dbSNP
rs1353534160 3392 dbSNP
rs997374631 3394 dbSNP
rs1412803434 3397 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions Prostate Tissue
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in SRX1760597. RNA binding protein: AGO2. Condition:AGO-CLIP-LNCaP_C ...

- Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al., 2016, Neoplasia (New York, N.Y.).

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' gguuguccguuuuCCAAUUUg 5'
                       ||||||| 
Target 5' -----uguuucuuGGUUAAAc 3'
 		1 - 16
Article - Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al.
- Neoplasia (New York, N.Y.), 2016
MicroRNA (miRNA) deregulation in prostate cancer (PCa) contributes to PCa initiation and metastatic progression. To comprehensively define the cancer-associated changes in miRNA targeting and function in commonly studied models of PCa, we performed photoactivatable ribonucleoside-enhanced cross-linking immunoprecipitation of the Argonaute protein in a panel of PCa cell lines modeling different stages of PCa progression. Using this comprehensive catalogue of miRNA targets, we analyzed miRNA targeting on known drivers of PCa and examined tissue-specific and stage-specific pathway targeting by miRNAs. We found that androgen receptor is the most frequently targeted PCa oncogene and that miR-148a targets the largest number of known PCa drivers. Globally, tissue-specific and stage-specific changes in miRNA targeting are driven by homeostatic response to active oncogenic pathways. Our findings indicate that, even in advanced PCa, the miRNA pool adapts to regulate continuing alterations in the cancer genome to balance oncogenic molecular changes. These findings are important because they are the first to globally characterize miRNA changes in PCa and demonstrate how the miRNA target spectrum responds to staged tumorigenesis.
LinkOut: [PMID: 27292025]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000377072.3 | 3UTR | UUAAACAUUGCACAGUUCUUACCUCAUUUCUGUAAAUAAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
118 hsa-miR-552-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT060509 PPP6R3 protein phosphatase 6 regulatory subunit 3 2 2
MIRT061011 C1ORF21 chromosome 1 open reading frame 21 2 6
MIRT090823 MBNL1 muscleblind like splicing regulator 1 2 4
MIRT126569 MASTL microtubule associated serine/threonine kinase like 2 2
MIRT147688 CBX4 chromobox 4 2 4
MIRT191746 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 4
MIRT202397 GPCPD1 glycerophosphocholine phosphodiesterase 1 2 2
MIRT231334 XRRA1 X-ray radiation resistance associated 1 2 8
MIRT241355 SLC16A1 solute carrier family 16 member 1 2 2
MIRT280627 BCL11B B-cell CLL/lymphoma 11B 2 2
MIRT287408 GPATCH8 G-patch domain containing 8 2 2
MIRT314310 FCHO2 FCH domain only 2 2 2
MIRT321751 ANKRD46 ankyrin repeat domain 46 2 2
MIRT329335 ETF1 eukaryotic translation termination factor 1 2 2
MIRT346611 PMAIP1 phorbol-12-myristate-13-acetate-induced protein 1 2 6
MIRT349189 ZNF557 zinc finger protein 557 2 2
MIRT357416 HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 2 2
MIRT359670 NUS1 NUS1 dehydrodolichyl diphosphate synthase subunit 2 2
MIRT442751 PLAG1 PLAG1 zinc finger 2 6
MIRT446639 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT450820 KCNB1 potassium voltage-gated channel subfamily B member 1 2 2
MIRT452304 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 2
MIRT468814 RSRC2 arginine and serine rich coiled-coil 2 2 6
MIRT471878 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 6
MIRT472681 MYCBP MYC binding protein 2 4
MIRT473123 MLLT10 MLLT10, histone lysine methyltransferase DOT1L cofactor 2 2
MIRT477434 EML4 echinoderm microtubule associated protein like 4 2 4
MIRT501254 SECISBP2L SECIS binding protein 2 like 2 2
MIRT501586 PLCG1 phospholipase C gamma 1 2 2
MIRT503371 SCAMP1 secretory carrier membrane protein 1 2 2
MIRT504358 ARID1B AT-rich interaction domain 1B 2 6
MIRT504421 SHC4 SHC adaptor protein 4 2 6
MIRT505497 SRSF1 serine and arginine rich splicing factor 1 2 4
MIRT505792 RSBN1 round spermatid basic protein 1 2 8
MIRT506471 NAA25 N(alpha)-acetyltransferase 25, NatB auxiliary subunit 2 4
MIRT507372 EPS8 epidermal growth factor receptor pathway substrate 8 2 2
MIRT510850 RAN RAN, member RAS oncogene family 2 8
MIRT510986 PER1 period circadian clock 1 2 4
MIRT512987 SEZ6L seizure related 6 homolog like 2 4
MIRT514937 GPR141 G protein-coupled receptor 141 2 2
MIRT522131 NRBF2 nuclear receptor binding factor 2 2 6
MIRT524300 CTC1 CST telomere replication complex component 1 2 8
MIRT526363 LSAMP limbic system-associated membrane protein 2 2
MIRT526441 RBM48 RNA binding motif protein 48 2 2
MIRT526534 MDM2 MDM2 proto-oncogene 2 4
MIRT528065 HES2 hes family bHLH transcription factor 2 2 2
MIRT531043 TIPARP TCDD inducible poly(ADP-ribose) polymerase 2 2
MIRT532313 FKBP9 FK506 binding protein 9 2 4
MIRT533196 WASF3 WAS protein family member 3 2 4
MIRT535701 NAV1 neuron navigator 1 2 5
MIRT536791 HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 2 2
MIRT537228 GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 2 6
MIRT538247 CUX2 cut like homeobox 2 2 2
MIRT538476 CLOCK clock circadian regulator 2 2
MIRT538798 C2CD5 C2 calcium dependent domain containing 5 2 2
MIRT539031 ATXN7L1 ataxin 7 like 1 2 2
MIRT542043 SLC25A46 solute carrier family 25 member 46 2 2
MIRT543093 TNFRSF11A TNF receptor superfamily member 11a 2 2
MIRT543545 INTS2 integrator complex subunit 2 2 2
MIRT554332 SH3GLB1 SH3 domain containing GRB2 like, endophilin B1 2 4
MIRT556070 MRFAP1 Morf4 family associated protein 1 2 2
MIRT558125 ENPP4 ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative) 2 2
MIRT559132 BTG3 BTG anti-proliferation factor 3 2 4
MIRT559423 ASF1A anti-silencing function 1A histone chaperone 2 2
MIRT560026 ZNF780A zinc finger protein 780A 2 2
MIRT566128 RACGAP1 Rac GTPase activating protein 1 2 2
MIRT566441 PHF13 PHD finger protein 13 2 2
MIRT568541 AKT3 AKT serine/threonine kinase 3 2 2
MIRT568626 ACVR2A activin A receptor type 2A 2 2
MIRT576599 Nav1 neuron navigator 1 2 4
MIRT609438 USP27X ubiquitin specific peptidase 27, X-linked 2 2
MIRT611441 NRIP3 nuclear receptor interacting protein 3 2 2
MIRT613007 GABRB1 gamma-aminobutyric acid type A receptor beta1 subunit 2 2
MIRT614149 CEP97 centrosomal protein 97 2 2
MIRT614580 LHX1 LIM homeobox 1 2 2
MIRT615631 ATF6 activating transcription factor 6 2 4
MIRT616115 NDUFS1 NADH:ubiquinone oxidoreductase core subunit S1 2 2
MIRT620351 WDR75 WD repeat domain 75 2 2
MIRT621733 TNPO2 transportin 2 2 2
MIRT623718 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 2
MIRT626107 MYLIP myosin regulatory light chain interacting protein 2 2
MIRT630779 CRLS1 cardiolipin synthase 1 2 2
MIRT632585 PLCL1 phospholipase C like 1 (inactive) 2 2
MIRT635161 HOXD12 homeobox D12 2 2
MIRT635878 SIX3 SIX homeobox 3 2 2
MIRT636941 LIMS3 LIM zinc finger domain containing 3 2 2
MIRT637007 LIMS3L LIM zinc finger domain containing 4 2 2
MIRT639202 LRRC9 leucine rich repeat containing 9 2 4
MIRT639388 PKHD1 PKHD1, fibrocystin/polyductin 2 2
MIRT639543 SMCR7L mitochondrial elongation factor 1 1 1
MIRT642071 FUT11 fucosyltransferase 11 2 2
MIRT642567 GDPGP1 GDP-D-glucose phosphorylase 1 2 2
MIRT643035 SNX24 sorting nexin 24 2 2
MIRT648372 SMPD1 sphingomyelin phosphodiesterase 1 2 2
MIRT648529 KIAA1143 KIAA1143 2 2
MIRT652184 TRIM44 tripartite motif containing 44 2 2
MIRT652945 SYNC syncoilin, intermediate filament protein 2 2
MIRT657012 KCNK5 potassium two pore domain channel subfamily K member 5 2 2
MIRT658993 DIP2C disco interacting protein 2 homolog C 2 2
MIRT659629 CDKN2AIP CDKN2A interacting protein 2 2
MIRT659769 CCBE1 collagen and calcium binding EGF domains 1 2 2
MIRT660527 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 2
MIRT668526 ERP44 endoplasmic reticulum protein 44 2 2
MIRT687184 PRKAR1A protein kinase cAMP-dependent type I regulatory subunit alpha 2 2
MIRT696280 IER3IP1 immediate early response 3 interacting protein 1 2 2
MIRT697673 WASL Wiskott-Aldrich syndrome like 2 2
MIRT697716 VKORC1L1 vitamin K epoxide reductase complex subunit 1 like 1 2 2
MIRT699719 SESTD1 SEC14 and spectrin domain containing 1 2 2
MIRT701220 OGDH oxoglutarate dehydrogenase 2 2
MIRT701436 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT701554 NANOS1 nanos C2HC-type zinc finger 1 2 2
MIRT707559 CLVS2 clavesin 2 2 2
MIRT707925 PPP1R3D protein phosphatase 1 regulatory subunit 3D 2 2
MIRT711148 NAA15 N(alpha)-acetyltransferase 15, NatA auxiliary subunit 2 2
MIRT719256 CD44 CD44 molecule (Indian blood group) 2 2
MIRT719810 TXNDC17 thioredoxin domain containing 17 2 2
MIRT722650 SIGLEC14 sialic acid binding Ig like lectin 14 2 2
MIRT723901 PEX11A peroxisomal biogenesis factor 11 alpha 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-552 Ursodeoxycholic acid (UDCA) approved 31401 Microarray rat Liver 20689055 2010 down-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-552 Fluorouracil 3385 NSC19893 approved resistant cell line (KYSE)

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