miRTarBase - #MIRT473557


—
pre-miRNA Information
pre-miRNA hsa-mir-3942   
Genomic Coordinates chr15: 35372256 - 35372364
Description Homo sapiens miR-3942 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3942-3p
Sequence 65| UUUCAGAUAACAGUAUUACAU |85
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 5 15 - 35372296 29233923 MiREDiBase
A-to-I 10 15 - 35372291 23291724, 29233923 MiREDiBase
A-to-I 18 15 - 35372283 23291724, 29233923 MiREDiBase
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN1674243 19 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1043666670 6 dbSNP
rs1264147291 18 dbSNP
rs1223363654 20 dbSNP
Putative Targets

Gene Information
Gene Symbol MATR3   
Synonyms ALS21, MPD2, VCPDM
Description matrin 3
Transcript NM_018834   
Other Transcripts NM_199189   
Expression
Putative miRNA Targets on MATR3
3'UTR of MATR3
(miRNA target sites are highlighted)		 
>MATR3|NM_018834|3'UTR
   1 GATGTGCAAGGAGATTTAATGATTTCAAAGAAAATAATGGTTCTTTGTTTTTAATGTTAACCTTTTTTAAATACAATACT
  81 GATAGTTAGAAGAAAACTATTGTACTCTTTTGTTTTAGTGGAGAAATAATAGATGTCTGTTCATGTGTTAAGTGTTATAG
 161 CAAAAAAAATACACATATGGTTAAGTTAATGAATAGTTTTTGTTTTATCAGAATGGCAACAGACAGAAGTACTTTGTAGA
 241 GATTGACTTCCTAAGCTACTTAAGACAACTTGCACCACTAAGAAAAAAATGTAGAACCATTTGGAAAAATGAAATTTAGT
 321 AGTTCCAAGTTTCAAAGAAATGTCAACATTTTATTCCATTCAATAAAGAACAAAACCAATAGTGTTTTTATTACTTTCAT
 401 CTGAAACATTCCATGTTTTAATCTGAGCCTTGCAGACTTTCATTTGGAGTTTGAACCCGTTTTGGTTGCATTTCATTTTT
 481 GGAGAACTTAATTAACGTGAGATTGGCAATTGAAATGCAGGTGCAGTTTTCTGTTAATGTCATGCTGTTGTTTAGGTAAT
 561 AAGAAATATTAAGTAATTGGCTTTAGATTTTGTAATTTTTTTCCCTGAGTTCCTGCTAGATTTCGTATTCTAGTAGTCAA
 641 TGTATTTTCAGTGAAATGCAAAAATATTCCCGTTATCTTTGACCAGTATTAATTTTTGAGATCTTACTGCTTGTCACTTG
 721 AATCCCGTGATTGTCATACATCTCTGGTATAAGCAACATTTGATTTTTGAAGTGTGTAGACCATCTCTTCATATTTTCAA
 801 GATGTAATTTTACATTTCTGCATTTTTAAAACAGTTTGGCCATAATCCTAGATGCACGCTTCTAATTCATGTACCTGCAC
 881 ATGTGACCTTTGTGAACAGAAATTTGCATGTATAATTTGTGTTTACTTGTAACTTTCTGGTTATATACTGCTTATATCTG
 961 TGGATTCAAGTTACTGAAGTGAATACCAATAAAAAGAAAACCCTAGGCCATGTTAATTGGTTATACATGTTTGGAATGTT
1041 AACCAACGTATTTGTCAGTTGTGGTTTTTATTCGCTCTTAAACTTTGTGCATGCTTTAACAATTTATTACTTTTAAATCT
1121 AGAGTGAATTCTAAAGACTGCCGCTAAAGATCTGAGTTTTAAAAATGTTGTTGCTGGTGGATTTCTTGTTCCTGTTACAT
1201 AACTAAAAGTGAGGCCATTTGTGGTTTTTAAAAACCTTATGAATTAAAAATGCTACAGGTGAACAAACAGAAGCTTATGT
1281 TTAGAGATATTGATGACTTAACAGTACAATTGGAAGTAATACGGATGAGCAAGAATTAGTTCTGCAGCTTTTCAAAATAA
1361 TTACGTAGAGACTCTTGGTATATTGGATTATCTGTTGTAAACAATTTTTTTTTCTTCCCTGACACAGGGTCTCACTCTGT
1441 CACCCAGACTGGAGTGCAGTGGCACAGTTCTCTGCAACCTCAGCCTTTGGGCTCAAATGACCCTCCTACCTCAGTCTCCT
1521 GAGTAGCTGGGACTACAGGCTCATGCCACTATACCTGGCTAGTTTTTGGTTTTTTTGTATAGATGGGGCTTTGCCATGTT
1601 GCCCAGGTTGATCTTGAATTCCTGGGCCCAAGTGATCTGCTCGCTTCAGCCTCCCAAAGTGCTGGGACTGTAGGCATGAG
1681 CCACCATCCCTGGCCAAGAAACAAAGTTTTAATTTCAAAAAAATCTACAAAAACAGGATAGGCATTGTCTTTCAAATGTT
1761 CAGACCCCAGTTTATTAAAGGATACTTCAAATAGTTGGCTAAATTTTATGATCTCTCCCGTTGAAAAGTAGGTGATGATT
1841 TTAATGTGACATGCACAAAAAATCCTTGCCAGTTTACTTCTGCAATTTAATTTTAGCCTTTACTAATTACCCACTTCTGT
1921 TTAATTCCAATTTTTAACAGCAGGTACATAAAGCATTATGTGCACAATGGAGTTCTTCAGTGTTTCCTTTCAGTGATGGC
2001 TTTTTCATAGCTTCAACTTTGTTGGATTTAGCAAGTTGAAGGAAAGAATGCTATGTTTTTAATACCTACATTTGAGAGCA
2081 TTTAGAAATCAGAAATTATAATAAGCTGTTAGTGATAAATCTGTAACAGCCCTTCGATTACGAGAAAACCTCTTTTTAGT
2161 AGGAATGTTTCCACTCATGTTTGCTGTAAAGTTTAAGAACATTTTTCCTACGGCTATGTCAGCCCTTAGTTTAATCTTAC
2241 ATTATCCTACAAAAGTGAATGAAACTTCTAGAAGTACCTTGA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' uacAUUAUGACAAUAGACUUu 5'
             || |||| | ||||||| 
Target 5' tttTATTACTTTCATCTGAAa 3'
 386 - 406 166.00 -8.70
2 
miRNA  3' uacauUAUGACAAUAGACUUu 5'
               ||::| | ||||||: 
Target 5' attccATGTTTTAATCTGAGc 3'
 408 - 428 140.00 -6.70
3 
miRNA  3' uaCAUUAUGAC--AAUAGACuuu 5'
            || |||:||  |||||||   
Target 5' tgGT-ATATTGGATTATCTGttg 3'
 1376 - 1397 128.00 -10.12
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
351145 61 ClinVar
351146 83 ClinVar
351147 98 ClinVar
904615 139 ClinVar
351148 175 ClinVar
351149 178 ClinVar
904616 263 ClinVar
351150 276 ClinVar
351151 306 ClinVar
351152 314 ClinVar
351153 407 ClinVar
351154 414 ClinVar
905405 442 ClinVar
905406 488 ClinVar
905407 494 ClinVar
351155 497 ClinVar
351156 588 ClinVar
351157 641 ClinVar
351158 673 ClinVar
351159 709 ClinVar
351160 748 ClinVar
351161 770 ClinVar
351162 771 ClinVar
905920 858 ClinVar
351163 930 ClinVar
351164 1077 ClinVar
351165 1088 ClinVar
351166 1112 ClinVar
907990 1144 ClinVar
351167 1240 ClinVar
351168 1260 ClinVar
351169 1279 ClinVar
351170 1289 ClinVar
351171 1395 ClinVar
351172 1426 ClinVar
351173 1483 ClinVar
904678 1536 ClinVar
351174 1634 ClinVar
351175 1758 ClinVar
351176 1768 ClinVar
351177 1808 ClinVar
351178 1822 ClinVar
351179 1892 ClinVar
351180 2000 ClinVar
904679 2055 ClinVar
351181 2078 ClinVar
905469 2099 ClinVar
905470 2143 ClinVar
905471 2171 ClinVar
351182 2172 ClinVar
351183 2175 ClinVar
351184 2195 ClinVar
351185 2201 ClinVar
351186 2223 ClinVar
351187 2242 ClinVar
COSN30529971 33 COSMIC
COSN14142348 44 COSMIC
COSN30520402 46 COSMIC
COSN26551598 48 COSMIC
COSN31492273 100 COSMIC
COSN31515204 108 COSMIC
COSN31543970 138 COSMIC
COSN31481940 161 COSMIC
COSN30135813 170 COSMIC
COSN14564173 172 COSMIC
COSN31582181 179 COSMIC
COSN28204767 237 COSMIC
COSN5590412 240 COSMIC
COSN26560671 385 COSMIC
COSN31485045 406 COSMIC
COSN31959959 556 COSMIC
COSN31597480 584 COSMIC
COSN31569696 600 COSMIC
COSN28697928 673 COSMIC
COSN23372262 712 COSMIC
COSN31547840 743 COSMIC
COSN2072737 774 COSMIC
COSN31488276 788 COSMIC
COSN26578045 828 COSMIC
COSN1308148 1251 COSMIC
COSN29926406 1262 COSMIC
COSN28202212 1392 COSMIC
COSN1308149 1757 COSMIC
COSN25629761 1828 COSMIC
COSN5158420 1966 COSMIC
COSN23500583 2076 COSMIC
COSN28196235 2181 COSMIC
COSN25880366 2262 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1213322989 3 dbSNP
rs1165255715 7 dbSNP
rs1179706261 9 dbSNP
rs1388069225 10 dbSNP
rs775861407 11 dbSNP
rs374903488 12 dbSNP
rs1187745055 27 dbSNP
rs764542523 30 dbSNP
rs754207617 36 dbSNP
rs755476765 36 dbSNP
rs779246568 37 dbSNP
rs748684789 39 dbSNP
rs1470864587 40 dbSNP
rs1313317054 41 dbSNP
rs770508174 42 dbSNP
rs757747368 44 dbSNP
rs780916919 47 dbSNP
rs745502868 48 dbSNP
rs765689775 54 dbSNP
rs751028651 55 dbSNP
rs754494677 56 dbSNP
rs1212277639 57 dbSNP
rs1247686806 61 dbSNP
rs886059993 61 dbSNP
rs780754954 62 dbSNP
rs747792040 63 dbSNP
rs749356637 63 dbSNP
rs755822163 65 dbSNP
rs769565843 69 dbSNP
rs770853289 71 dbSNP
rs778731006 75 dbSNP
rs773056106 77 dbSNP
rs769383117 80 dbSNP
rs1481395643 81 dbSNP
rs1177011924 83 dbSNP
rs368308621 83 dbSNP
rs772276501 83 dbSNP
rs548768105 84 dbSNP
rs1435794737 85 dbSNP
rs978042550 86 dbSNP
rs1282590521 88 dbSNP
rs570298093 91 dbSNP
rs1305090542 92 dbSNP
rs1332518909 95 dbSNP
rs1347168722 96 dbSNP
rs1428034448 98 dbSNP
rs769044248 98 dbSNP
rs1431636800 100 dbSNP
rs1167716387 101 dbSNP
rs762103685 102 dbSNP
rs770608274 107 dbSNP
rs748998975 108 dbSNP
rs903654383 108 dbSNP
rs55932698 113 dbSNP
rs765715626 116 dbSNP
rs768520210 129 dbSNP
rs750895768 130 dbSNP
rs763517746 134 dbSNP
rs766999656 136 dbSNP
rs755732105 138 dbSNP
rs986086235 144 dbSNP
rs537721445 145 dbSNP
rs1273479657 148 dbSNP
rs777313896 150 dbSNP
rs1214588250 153 dbSNP
rs559340917 159 dbSNP
rs1309660945 161 dbSNP
rs375682201 162 dbSNP
rs761747187 162 dbSNP
rs774101826 162 dbSNP
rs757009272 167 dbSNP
rs778835793 169 dbSNP
rs1435351075 171 dbSNP
rs1285269716 173 dbSNP
rs767576295 175 dbSNP
rs886059994 175 dbSNP
rs1476950724 177 dbSNP
rs13698 178 dbSNP
rs1410488098 180 dbSNP
rs748891727 181 dbSNP
rs772188357 182 dbSNP
rs1462269413 186 dbSNP
rs919426919 190 dbSNP
rs1173741307 192 dbSNP
rs1358713492 196 dbSNP
rs1413834450 197 dbSNP
rs183623114 198 dbSNP
rs1471324845 200 dbSNP
rs1304344865 202 dbSNP
rs1331013500 207 dbSNP
rs1231587719 208 dbSNP
rs1429126345 211 dbSNP
rs747112845 212 dbSNP
rs1182473307 214 dbSNP
rs1351789348 219 dbSNP
rs751632478 219 dbSNP
rs768869655 220 dbSNP
rs1236059006 221 dbSNP
rs774652755 223 dbSNP
rs1209943899 224 dbSNP
rs1283359931 225 dbSNP
rs1361061801 230 dbSNP
rs1222565053 231 dbSNP
rs377192161 233 dbSNP
rs1268152991 234 dbSNP
rs1270009374 239 dbSNP
rs1449763388 243 dbSNP
rs1183851948 244 dbSNP
rs1233261605 249 dbSNP
rs1469382693 250 dbSNP
rs1158276779 254 dbSNP
rs1393328523 256 dbSNP
rs1377328181 257 dbSNP
rs1378690022 263 dbSNP
rs1221444957 269 dbSNP
rs553096974 270 dbSNP
rs776728878 271 dbSNP
rs187985845 276 dbSNP
rs770048005 277 dbSNP
rs1410559510 279 dbSNP
rs1331394554 281 dbSNP
rs759957450 281 dbSNP
rs1420501079 283 dbSNP
rs541973421 286 dbSNP
rs562599302 298 dbSNP
rs1483787322 301 dbSNP
rs1306704649 303 dbSNP
rs563125595 306 dbSNP
rs1246124828 310 dbSNP
rs180806333 314 dbSNP
rs896127598 315 dbSNP
rs1353586014 317 dbSNP
rs1197494739 318 dbSNP
rs1268845820 320 dbSNP
rs545686676 324 dbSNP
rs1457202862 326 dbSNP
rs1312280436 327 dbSNP
rs773334122 333 dbSNP
rs1176524079 334 dbSNP
rs760862161 334 dbSNP
rs1236627219 335 dbSNP
rs1338510280 344 dbSNP
rs1042275321 347 dbSNP
rs903689225 358 dbSNP
rs564077880 364 dbSNP
rs1367980128 370 dbSNP
rs1189462647 371 dbSNP
rs768283929 380 dbSNP
rs1268588536 381 dbSNP
rs1170216559 383 dbSNP
rs1397823085 389 dbSNP
rs1454908835 391 dbSNP
rs1465476097 391 dbSNP
rs1366282850 395 dbSNP
rs528383186 399 dbSNP
rs1445565701 406 dbSNP
rs185734839 407 dbSNP
rs1452943451 408 dbSNP
rs1311491354 409 dbSNP
rs1338193174 411 dbSNP
rs886059995 414 dbSNP
rs889186214 422 dbSNP
rs1263062151 423 dbSNP
rs1399755469 428 dbSNP
rs561547588 429 dbSNP
rs1487563276 430 dbSNP
rs528969626 432 dbSNP
rs1196637395 433 dbSNP
rs1222551340 434 dbSNP
rs190578145 435 dbSNP
rs1461560693 438 dbSNP
rs778552955 441 dbSNP
rs572126808 442 dbSNP
rs1439216330 446 dbSNP
rs570262242 458 dbSNP
rs531169751 459 dbSNP
rs1425020594 460 dbSNP
rs552815510 464 dbSNP
rs1477797955 465 dbSNP
rs1383376453 476 dbSNP
rs1387977796 483 dbSNP
rs1169101759 484 dbSNP
rs966037362 487 dbSNP
rs776375279 488 dbSNP
rs1449245898 491 dbSNP
rs780158736 492 dbSNP
rs972728364 494 dbSNP
rs140707719 497 dbSNP
rs1266717607 498 dbSNP
rs1383463217 503 dbSNP
rs1200317748 504 dbSNP
rs1290328755 509 dbSNP
rs1318444278 510 dbSNP
rs1339216449 516 dbSNP
rs1216737325 520 dbSNP
rs1285047292 525 dbSNP
rs1202683847 532 dbSNP
rs1324093319 533 dbSNP
rs1232246025 535 dbSNP
rs952223515 544 dbSNP
rs1329313600 546 dbSNP
rs1482380353 547 dbSNP
rs1207076470 553 dbSNP
rs1264021549 557 dbSNP
rs1487968284 560 dbSNP
rs1305828511 561 dbSNP
rs866740737 561 dbSNP
rs1429455809 564 dbSNP
rs1397625056 565 dbSNP
rs984942739 566 dbSNP
rs1192131544 570 dbSNP
rs1464983028 577 dbSNP
rs926382209 581 dbSNP
rs1432076579 582 dbSNP
rs1434175320 583 dbSNP
rs1175767078 585 dbSNP
rs1376244149 587 dbSNP
rs535027907 588 dbSNP
rs1438658010 590 dbSNP
rs959127142 595 dbSNP
rs1289028566 596 dbSNP
rs1342714907 596 dbSNP
rs991876703 596 dbSNP
rs1262435739 598 dbSNP
rs1223549494 601 dbSNP
rs553296428 603 dbSNP
rs945024723 605 dbSNP
rs755015663 620 dbSNP
rs1346049090 621 dbSNP
rs1361570601 623 dbSNP
rs1469293807 625 dbSNP
rs1386048289 626 dbSNP
rs1408802300 633 dbSNP
rs1163544426 635 dbSNP
rs568396556 638 dbSNP
rs535533417 639 dbSNP
rs1331279083 640 dbSNP
rs145836548 641 dbSNP
rs756266191 642 dbSNP
rs1177831439 655 dbSNP
rs1286922306 660 dbSNP
rs1353161988 665 dbSNP
rs1214522462 667 dbSNP
rs1271741129 668 dbSNP
rs575083486 670 dbSNP
rs1191075845 671 dbSNP
rs1265725491 672 dbSNP
rs7305 673 dbSNP
rs764290381 678 dbSNP
rs771371309 683 dbSNP
rs889593829 685 dbSNP
rs376391287 686 dbSNP
rs1417379646 687 dbSNP
rs1007611395 688 dbSNP
rs1164905859 688 dbSNP
rs1040420048 689 dbSNP
rs901879162 690 dbSNP
rs1457362991 692 dbSNP
rs15250 693 dbSNP
rs1350871947 694 dbSNP
rs1291651504 703 dbSNP
rs1365461813 706 dbSNP
rs1375257627 706 dbSNP
rs14109 709 dbSNP
rs1310338076 716 dbSNP
rs878926796 717 dbSNP
rs1027010429 718 dbSNP
rs1337859000 719 dbSNP
rs760157474 727 dbSNP
rs557531046 728 dbSNP
rs1322347009 729 dbSNP
rs573060775 733 dbSNP
rs952254701 736 dbSNP
rs1264200435 737 dbSNP
rs1006453599 738 dbSNP
rs1387363902 740 dbSNP
rs181792838 748 dbSNP
rs1472618319 750 dbSNP
rs1285050175 756 dbSNP
rs1446353306 761 dbSNP
rs561705958 770 dbSNP
rs886059996 771 dbSNP
rs1285861792 775 dbSNP
rs1184998380 777 dbSNP
rs1801867 779 dbSNP
rs1404171173 782 dbSNP
rs1358336329 786 dbSNP
rs992322176 788 dbSNP
rs1162673845 791 dbSNP
rs1363559998 795 dbSNP
rs750198962 796 dbSNP
rs1465989494 799 dbSNP
rs1330388107 800 dbSNP
rs1397795207 807 dbSNP
rs751390909 808 dbSNP
rs1317346590 817 dbSNP
rs1380064611 819 dbSNP
rs1187786329 820 dbSNP
rs1227800030 823 dbSNP
rs1347016491 823 dbSNP
rs966814287 831 dbSNP
rs977774186 832 dbSNP
rs1309751569 834 dbSNP
rs925215463 838 dbSNP
rs1442428666 843 dbSNP
rs1199778033 846 dbSNP
rs1257842865 848 dbSNP
rs936610882 852 dbSNP
rs1456673471 855 dbSNP
rs745417770 858 dbSNP
rs1237687059 859 dbSNP
rs868220220 865 dbSNP
rs754943354 866 dbSNP
rs1179585500 869 dbSNP
rs1196218044 870 dbSNP
rs1421616164 871 dbSNP
rs1490080995 876 dbSNP
rs1292057109 878 dbSNP
rs1225130785 881 dbSNP
rs1478123904 881 dbSNP
rs1300491337 882 dbSNP
rs1169803615 883 dbSNP
rs1421215358 888 dbSNP
rs1049604333 892 dbSNP
rs1470831265 893 dbSNP
rs1336464153 898 dbSNP
rs1359945511 903 dbSNP
rs1447447704 905 dbSNP
rs781058267 907 dbSNP
rs1342400266 908 dbSNP
rs751536372 909 dbSNP
rs1219796089 913 dbSNP
rs1342450677 921 dbSNP
rs911057309 922 dbSNP
rs1278046563 923 dbSNP
rs1316511057 926 dbSNP
rs886059997 930 dbSNP
rs1305224068 932 dbSNP
rs1278954027 940 dbSNP
rs1441451920 941 dbSNP
rs77010866 944 dbSNP
rs943871644 946 dbSNP
rs1207534389 960 dbSNP
rs747942522 961 dbSNP
rs1243366357 964 dbSNP
rs1488294486 966 dbSNP
rs1192944225 968 dbSNP
rs1421373897 970 dbSNP
rs1481325959 972 dbSNP
rs1172920096 974 dbSNP
rs1424162651 979 dbSNP
rs1479841518 979 dbSNP
rs865888982 980 dbSNP
rs756020618 986 dbSNP
rs1174147673 1004 dbSNP
rs141919082 1008 dbSNP
rs1400682264 1011 dbSNP
rs754998679 1013 dbSNP
rs1298177480 1021 dbSNP
rs1309716114 1024 dbSNP
rs1249596175 1027 dbSNP
rs1277127395 1027 dbSNP
rs1338690478 1033 dbSNP
rs576428600 1037 dbSNP
rs1339060428 1041 dbSNP
rs779880784 1041 dbSNP
rs777534987 1045 dbSNP
rs1439099572 1047 dbSNP
rs1372958202 1049 dbSNP
rs544315270 1049 dbSNP
rs748298899 1056 dbSNP
rs983790181 1057 dbSNP
rs1442681756 1059 dbSNP
rs1217122051 1062 dbSNP
rs1287715360 1063 dbSNP
rs1353869654 1065 dbSNP
rs1215233132 1074 dbSNP
rs756249632 1075 dbSNP
rs2015602 1077 dbSNP
rs1199429596 1078 dbSNP
rs937083045 1080 dbSNP
rs749589274 1082 dbSNP
rs1476878611 1084 dbSNP
rs771281653 1087 dbSNP
rs116660718 1088 dbSNP
rs1420433864 1090 dbSNP
rs1158091591 1095 dbSNP
rs1450525089 1099 dbSNP
rs1358658225 1102 dbSNP
rs1236183459 1103 dbSNP
rs746341550 1103 dbSNP
rs887746443 1103 dbSNP
rs772678059 1112 dbSNP
rs1330955477 1114 dbSNP
rs1434749425 1115 dbSNP
rs1311063276 1126 dbSNP
rs1461950311 1134 dbSNP
rs7448794 1137 dbSNP
rs1377144430 1138 dbSNP
rs1238927339 1142 dbSNP
rs552776841 1143 dbSNP
rs1357784533 1144 dbSNP
rs1224083231 1145 dbSNP
rs764920674 1146 dbSNP
rs1289052784 1147 dbSNP
rs1449709187 1149 dbSNP
rs895620327 1152 dbSNP
rs1033894502 1160 dbSNP
rs570972202 1161 dbSNP
rs528764967 1166 dbSNP
rs768513742 1166 dbSNP
rs1240304318 1167 dbSNP
rs762757938 1171 dbSNP
rs1178205082 1173 dbSNP
rs1450998052 1174 dbSNP
rs1344201758 1177 dbSNP
rs770518441 1178 dbSNP
rs766260538 1180 dbSNP
rs1164401969 1192 dbSNP
rs1390618796 1193 dbSNP
rs773926375 1198 dbSNP
rs371119946 1200 dbSNP
rs1333830769 1203 dbSNP
rs978222922 1204 dbSNP
rs1445753068 1205 dbSNP
rs1041574439 1206 dbSNP
rs1401426021 1208 dbSNP
rs1445602115 1210 dbSNP
rs1306550982 1215 dbSNP
rs904431726 1218 dbSNP
rs1485596710 1222 dbSNP
rs1202607389 1231 dbSNP
rs1244863056 1234 dbSNP
rs1000552576 1238 dbSNP
rs746298588 1240 dbSNP
rs1354125262 1253 dbSNP
rs772632850 1254 dbSNP
rs1289301625 1256 dbSNP
rs1244988821 1259 dbSNP
rs62381613 1260 dbSNP
rs1457108006 1261 dbSNP
rs1006939005 1265 dbSNP
rs1260094480 1266 dbSNP
rs1198255171 1268 dbSNP
rs750007027 1269 dbSNP
rs985383163 1269 dbSNP
rs150746889 1272 dbSNP
rs965491079 1275 dbSNP
rs116341961 1279 dbSNP
rs756222486 1280 dbSNP
rs186857653 1288 dbSNP
rs10515507 1289 dbSNP
rs984796557 1290 dbSNP
rs926940693 1291 dbSNP
rs1387589686 1294 dbSNP
rs4454047 1305 dbSNP
rs1191634856 1310 dbSNP
rs754047142 1321 dbSNP
rs769036852 1323 dbSNP
rs776781517 1324 dbSNP
rs1489903245 1326 dbSNP
rs1328940989 1328 dbSNP
rs1403870462 1338 dbSNP
rs1396142426 1339 dbSNP
rs945824567 1341 dbSNP
rs1332966262 1343 dbSNP
rs1387276611 1347 dbSNP
rs1338141153 1348 dbSNP
rs1221404233 1349 dbSNP
rs1220406341 1351 dbSNP
rs942010352 1355 dbSNP
rs1317134829 1356 dbSNP
rs1897581 1362 dbSNP
rs1225119711 1365 dbSNP
rs1041521439 1366 dbSNP
rs1249874283 1367 dbSNP
rs1484378401 1368 dbSNP
rs746279020 1370 dbSNP
rs1255580509 1371 dbSNP
rs1484695510 1372 dbSNP
rs1014195066 1374 dbSNP
rs904380790 1382 dbSNP
rs1302184418 1383 dbSNP
rs1196556032 1385 dbSNP
rs1264507822 1387 dbSNP
rs572983701 1395 dbSNP
rs1367813357 1399 dbSNP
rs1050777182 1402 dbSNP
rs1166585748 1403 dbSNP
rs560051803 1405 dbSNP
rs765646403 1405 dbSNP
rs780629465 1405 dbSNP
rs1168939782 1410 dbSNP
rs1330696023 1415 dbSNP
rs35263875 1417 dbSNP
rs1379689454 1418 dbSNP
rs889071300 1419 dbSNP
rs1171574440 1421 dbSNP
rs1007298977 1423 dbSNP
rs1200387190 1424 dbSNP
rs145516036 1426 dbSNP
rs769420636 1427 dbSNP
rs901243554 1428 dbSNP
rs1032049410 1430 dbSNP
rs1251823145 1433 dbSNP
rs1298787056 1449 dbSNP
rs370405215 1457 dbSNP
rs772913069 1460 dbSNP
rs569757757 1466 dbSNP
rs1312499886 1471 dbSNP
rs1234248896 1476 dbSNP
rs1320834029 1477 dbSNP
rs1255627342 1478 dbSNP
rs750511409 1480 dbSNP
rs952996171 1482 dbSNP
rs79616595 1483 dbSNP
rs1035008717 1485 dbSNP
rs1397782439 1488 dbSNP
rs1287411387 1491 dbSNP
rs1488266190 1492 dbSNP
rs1018169266 1495 dbSNP
rs959026934 1497 dbSNP
rs1434058602 1502 dbSNP
rs910711534 1503 dbSNP
rs770745625 1505 dbSNP
rs992437608 1509 dbSNP
rs1158759775 1510 dbSNP
rs374910018 1510 dbSNP
rs1359297142 1511 dbSNP
rs1417805320 1514 dbSNP
rs767466630 1525 dbSNP
rs1459977039 1526 dbSNP
rs1368127183 1534 dbSNP
rs111689401 1536 dbSNP
rs977161250 1539 dbSNP
rs1369004265 1541 dbSNP
rs1336701869 1543 dbSNP
rs925752471 1543 dbSNP
rs1309658840 1546 dbSNP
rs1310104626 1550 dbSNP
rs1353004519 1553 dbSNP
rs1214279444 1554 dbSNP
rs1337410705 1556 dbSNP
rs1383019417 1557 dbSNP
rs544182250 1562 dbSNP
rs1158235316 1564 dbSNP
rs147136715 1570 dbSNP
rs1050315023 1571 dbSNP
rs1180337434 1572 dbSNP
rs533023632 1576 dbSNP
rs1251481205 1577 dbSNP
rs1441187611 1578 dbSNP
rs1178806456 1581 dbSNP
rs545157283 1589 dbSNP
rs1242454558 1590 dbSNP
rs564679688 1592 dbSNP
rs1443664270 1602 dbSNP
rs767291586 1605 dbSNP
rs528725251 1610 dbSNP
rs1166905390 1614 dbSNP
rs944668047 1624 dbSNP
rs949675319 1627 dbSNP
rs752676095 1632 dbSNP
rs1041037791 1633 dbSNP
rs886059998 1634 dbSNP
rs760664137 1635 dbSNP
rs1449295767 1638 dbSNP
rs547260175 1643 dbSNP
rs902682833 1644 dbSNP
rs1222129887 1646 dbSNP
rs1315486319 1651 dbSNP
rs1450243595 1655 dbSNP
rs901192699 1658 dbSNP
rs1322886554 1662 dbSNP
rs1244640020 1665 dbSNP
rs1271678354 1668 dbSNP
rs764139043 1669 dbSNP
rs1198962355 1671 dbSNP
rs1237177789 1672 dbSNP
rs562200318 1673 dbSNP
rs1317802921 1674 dbSNP
rs994213692 1675 dbSNP
rs1183061496 1678 dbSNP
rs1413829267 1679 dbSNP
rs752719892 1687 dbSNP
rs1321969313 1688 dbSNP
rs1162629002 1694 dbSNP
rs1425512347 1697 dbSNP
rs1465940895 1698 dbSNP
rs1332364557 1700 dbSNP
rs1354136329 1703 dbSNP
rs1053495899 1704 dbSNP
rs1304684421 1705 dbSNP
rs1379916303 1710 dbSNP
rs1191922938 1713 dbSNP
rs1395964114 1717 dbSNP
rs755934666 1720 dbSNP
rs1006570407 1722 dbSNP
rs888574033 1723 dbSNP
rs1017906667 1724 dbSNP
rs1257082163 1725 dbSNP
rs965380295 1728 dbSNP
rs1305434095 1730 dbSNP
rs1230498420 1732 dbSNP
rs998114454 1739 dbSNP
rs1006131963 1742 dbSNP
rs1482605728 1743 dbSNP
rs1431572380 1745 dbSNP
rs1185798723 1752 dbSNP
rs1342560124 1753 dbSNP
rs1265230611 1754 dbSNP
rs1034548670 1755 dbSNP
rs959202217 1756 dbSNP
rs1364698210 1757 dbSNP
rs191196444 1758 dbSNP
rs1408445740 1762 dbSNP
rs763347044 1767 dbSNP
rs181125183 1768 dbSNP
rs1165169168 1769 dbSNP
rs1359887674 1771 dbSNP
rs878914089 1773 dbSNP
rs774829111 1778 dbSNP
rs1311650842 1782 dbSNP
rs977088982 1783 dbSNP
rs1383175109 1786 dbSNP
rs1342907107 1787 dbSNP
rs779221091 1789 dbSNP
rs1269998084 1790 dbSNP
rs1360236648 1791 dbSNP
rs144515208 1792 dbSNP
rs1278885074 1793 dbSNP
rs1311163756 1801 dbSNP
rs1355746587 1802 dbSNP
rs1270029317 1805 dbSNP
rs144802057 1808 dbSNP
rs886059999 1808 dbSNP
rs1288124991 1809 dbSNP
rs1436506719 1810 dbSNP
rs756938830 1810 dbSNP
rs1488589622 1811 dbSNP
rs963475712 1812 dbSNP
rs1192779778 1814 dbSNP
rs1379357957 1816 dbSNP
rs957164932 1817 dbSNP
rs750699503 1820 dbSNP
rs778501711 1821 dbSNP
rs886060000 1822 dbSNP
rs990875137 1824 dbSNP
rs1317596758 1826 dbSNP
rs1334999090 1829 dbSNP
rs1426111551 1830 dbSNP
rs1346454618 1833 dbSNP
rs910398071 1836 dbSNP
rs1293840447 1838 dbSNP
rs1434231813 1839 dbSNP
rs1171887732 1843 dbSNP
rs1362480950 1846 dbSNP
rs758790547 1852 dbSNP
rs916593351 1855 dbSNP
rs1318166722 1857 dbSNP
rs1328130557 1857 dbSNP
rs944582622 1860 dbSNP
rs1343868666 1865 dbSNP
rs1439035211 1870 dbSNP
rs1275122790 1873 dbSNP
rs1173723226 1884 dbSNP
rs780345254 1885 dbSNP
rs1231562588 1891 dbSNP
rs886060001 1892 dbSNP
rs1353717283 1895 dbSNP
rs1429556701 1897 dbSNP
rs1204556997 1902 dbSNP
rs539527330 1903 dbSNP
rs1453165867 1906 dbSNP
rs1221994629 1911 dbSNP
rs769334352 1912 dbSNP
rs949374568 1919 dbSNP
rs1454009882 1928 dbSNP
rs929953867 1931 dbSNP
rs924175493 1943 dbSNP
rs777384577 1945 dbSNP
rs1158553695 1946 dbSNP
rs1383410040 1949 dbSNP
rs1203130306 1950 dbSNP
rs1407478423 1955 dbSNP
rs1303719975 1956 dbSNP
rs1324655462 1962 dbSNP
rs1394130517 1968 dbSNP
rs1438267723 1969 dbSNP
rs551633424 1970 dbSNP
rs748837762 1971 dbSNP
rs1377073576 1975 dbSNP
rs1237678000 1979 dbSNP
rs888510906 1981 dbSNP
rs1277747042 1983 dbSNP
rs1358427158 1986 dbSNP
rs745374237 1987 dbSNP
rs1228771436 1991 dbSNP
rs771535195 1992 dbSNP
rs1483671131 1994 dbSNP
rs1466916010 1995 dbSNP
rs1468857911 1996 dbSNP
rs886060002 2000 dbSNP
rs1359325582 2001 dbSNP
rs1185726370 2002 dbSNP
rs1212126546 2003 dbSNP
rs941484955 2008 dbSNP
rs1056340297 2013 dbSNP
rs1240245439 2017 dbSNP
rs894664185 2018 dbSNP
rs780509770 2021 dbSNP
rs1181134259 2022 dbSNP
rs1006601408 2026 dbSNP
rs1179717784 2033 dbSNP
rs1014422976 2035 dbSNP
rs1362094281 2037 dbSNP
rs1442028319 2038 dbSNP
rs1474067445 2042 dbSNP
rs1039386019 2043 dbSNP
rs1183023328 2046 dbSNP
rs900874335 2050 dbSNP
rs551160626 2052 dbSNP
rs1024501877 2054 dbSNP
rs116278472 2055 dbSNP
rs768948705 2061 dbSNP
rs1169062434 2062 dbSNP
rs998457464 2064 dbSNP
rs1172437816 2066 dbSNP
rs1400536991 2069 dbSNP
rs1390424936 2070 dbSNP
rs1240605483 2071 dbSNP
rs1326310943 2071 dbSNP
rs1341674332 2077 dbSNP
rs886060003 2078 dbSNP
rs1448672130 2084 dbSNP
rs1378968222 2085 dbSNP
rs767592461 2091 dbSNP
rs1292591494 2096 dbSNP
rs1332484098 2097 dbSNP
rs1334331162 2098 dbSNP
rs774066454 2099 dbSNP
rs1428198148 2100 dbSNP
rs762544041 2103 dbSNP
rs1005450549 2106 dbSNP
rs1159559714 2109 dbSNP
rs1421938802 2112 dbSNP
rs368175267 2113 dbSNP
rs957318225 2117 dbSNP
rs1016791905 2123 dbSNP
rs1195394891 2129 dbSNP
rs985916428 2133 dbSNP
rs990905929 2136 dbSNP
rs533709198 2137 dbSNP
rs1189345129 2140 dbSNP
rs1257410034 2142 dbSNP
rs1474455766 2150 dbSNP
rs916649685 2151 dbSNP
rs1173320167 2153 dbSNP
rs1245146536 2153 dbSNP
rs1289373998 2153 dbSNP
rs879874640 2156 dbSNP
rs970781259 2157 dbSNP
rs771889318 2159 dbSNP
rs1322315548 2162 dbSNP
rs1324448909 2166 dbSNP
rs776980331 2168 dbSNP
rs1403800962 2171 dbSNP
rs886060004 2172 dbSNP
rs775200100 2175 dbSNP
rs1353449512 2177 dbSNP
rs185678902 2177 dbSNP
rs1401516872 2178 dbSNP
rs762228111 2179 dbSNP
rs1278632996 2180 dbSNP
rs573956239 2187 dbSNP
rs1461060735 2192 dbSNP
rs760576225 2195 dbSNP
rs770043950 2201 dbSNP
rs538155815 2212 dbSNP
rs1211652428 2213 dbSNP
rs1279656048 2214 dbSNP
rs1053927347 2217 dbSNP
rs1196403163 2218 dbSNP
rs983176055 2219 dbSNP
rs1262866891 2221 dbSNP
rs1428283463 2222 dbSNP
rs886060005 2223 dbSNP
rs1209034451 2234 dbSNP
rs776646382 2238 dbSNP
rs1267181433 2239 dbSNP
rs1478093999 2239 dbSNP
rs886060006 2242 dbSNP
rs1319327309 2245 dbSNP
rs909899439 2248 dbSNP
rs761898506 2249 dbSNP
rs1343319548 2251 dbSNP
rs1298728501 2252 dbSNP
rs556178232 2256 dbSNP
rs780827204 2266 dbSNP
rs1380287945 2267 dbSNP
rs1293752381 2269 dbSNP
rs1333076799 2270 dbSNP
rs1461953159 2274 dbSNP
rs765314058 2278 dbSNP
rs1302780212 2280 dbSNP
rs1401117608 2283 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' uacauUAUGACAAUAGACUUu 5'
               ||::| | ||||||: 
Target 5' auuccAUGUUUUAAUCUGAGc 3'
 		5 - 25
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_001194954 | 3UTR | UACUUUCAUCUGAAACAUUCCAUGUUUUAAUCUGAGCCUUGCAGACUUUCAUUUGGAGUUUGAACCCGUUUUGGUUGCAUUUCAUUUUUGGAGAACUUAAUUAACGUGAGAUUGGCAAUUGAAAUGCAGGUGCAGUUUUCUGUUAAUGUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_001194954 | 3UTR | UUUCAUCUGAAACAUUCCAUGUUUUAAUCUGAGCCUUGCAGACUUUCAUUUGGAGUUUGAACCCGUUUUGGUUGCAUUUCAUUUUUGGAGAACUUAAUUAACGUGAGAUUGGCAAUUGAAAUGCAGGUGCAGUUUUCUGUUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_001194954 | 3UTR | CUUUCAUCUGAAACAUUCCAUGUUUUAAUCUGAGCCUUGCAGACUUUCAUUUGGAGUUUGAACCCGUUUUGGUUGCAUUUCAUUUUUGGAGAACUUAAUUAACGUGAGAUUGGCAAUUGAAAUGCAGGUGCAGUUUUCUGUUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_001194954 | 3UTR | UGAAACAUUCCAUGUUUUAAUCUGAGCCUUGCAGACUUUCAUUUGGAGUUUGAACCCGUUUUGGUUGCAUUUCAUUUUUGGAGAACUUAAUUAACGUGAGAUUGGCAAUUGAAAUGCAGGUGCAGUUUUCUGUUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_001194954 | 3UTR | AAACAUUCCAUGUUUUAAUCUGAGCCUUGCAGACUUUCAUUUGGAGUUUGAACCCGUUUUGGUUGCAUUUCAUUUUUGGAGAACUUAAUUAACGUGAGAUUGGCAAUUGAAAUGCAGGUGCAGUUUUCUGUUAAUGUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_001194954 | 3UTR | ACUUUCAUCUGAAACAUUCCAUGUUUUAAUCUGAGCCUUGCAGACUUUCAUUUGGAGUUUGAACCCGUUUUGGUUGCAUUUCAUUUUUGGAGAACUUAAUUAACGUGAGAUUGGCAAUUGAAAUGCAGGUGCAGUUUUCUGUUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000510056.1 | 3UTR | AAACAUUCCAUGUUUUAAUCUGAGCCUUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
116 hsa-miR-3942-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT093395 TMA16 translation machinery associated 16 homolog 2 2
MIRT134018 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT194942 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT265807 NOTCH2 notch 2 2 2
MIRT287615 NPEPPS aminopeptidase puromycin sensitive 2 2
MIRT444196 SESN3 sestrin 3 2 2
MIRT444480 UBN2 ubinuclein 2 2 2
MIRT446589 FBXO40 F-box protein 40 2 2
MIRT450501 ALPK3 alpha kinase 3 2 2
MIRT455182 AGTRAP angiotensin II receptor associated protein 2 2
MIRT455446 EPB41L4B erythrocyte membrane protein band 4.1 like 4B 2 2
MIRT456385 KLHL12 kelch like family member 12 2 2
MIRT460303 FLCN folliculin 2 2
MIRT461247 COX10 COX10, heme A:farnesyltransferase cytochrome c oxidase assembly factor 2 6
MIRT467948 SLC16A1 solute carrier family 16 member 1 2 2
MIRT468007 SIX4 SIX homeobox 4 2 2
MIRT468211 SGK1 serum/glucocorticoid regulated kinase 1 2 2
MIRT470635 POM121C POM121 transmembrane nucleoporin C 2 2
MIRT471785 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 2
MIRT473557 MATR3 matrin 3 2 2
MIRT475415 ICK intestinal cell kinase 2 2
MIRT476265 GNAL G protein subunit alpha L 2 6
MIRT477135 FAM107B family with sequence similarity 107 member B 2 6
MIRT478433 DAZAP2 DAZ associated protein 2 2 2
MIRT479050 CNOT6L CCR4-NOT transcription complex subunit 6 like 2 8
MIRT480872 BDNF-AS BDNF antisense RNA 2 2
MIRT484229 CLDN1 claudin 1 2 2
MIRT485055 SUCO SUN domain containing ossification factor 2 2
MIRT489871 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT492411 SCARB2 scavenger receptor class B member 2 2 2
MIRT499682 KCTD2 potassium channel tetramerization domain containing 2 2 4
MIRT505969 RAB11FIP1 RAB11 family interacting protein 1 2 4
MIRT507708 CNIH cornichon family AMPA receptor auxiliary protein 1 2 4
MIRT511878 GID4 GID complex subunit 4 homolog 2 6
MIRT513411 RTP4 receptor transporter protein 4 2 2
MIRT519873 ZFP30 ZFP30 zinc finger protein 2 4
MIRT520703 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT522890 KCNN3 potassium calcium-activated channel subfamily N member 3 2 6
MIRT523781 FAM63B MINDY lysine 48 deubiquitinase 2 2 2
MIRT523950 DYNLT1 dynein light chain Tctex-type 1 2 4
MIRT526894 ATP6V0E2 ATPase H+ transporting V0 subunit e2 2 2
MIRT529167 CCDC25 coiled-coil domain containing 25 2 2
MIRT529703 ZBTB49 zinc finger and BTB domain containing 49 2 2
MIRT530359 PCSK1 proprotein convertase subtilisin/kexin type 1 2 2
MIRT530595 C7orf33 chromosome 7 open reading frame 33 2 4
MIRT531528 CCT6A chaperonin containing TCP1 subunit 6A 2 2
MIRT531992 BARD1 BRCA1 associated RING domain 1 2 2
MIRT539547 AAK1 AP2 associated kinase 1 2 2
MIRT547757 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT549059 CAMSAP1 calmodulin regulated spectrin associated protein 1 2 2
MIRT549836 ECHDC1 ethylmalonyl-CoA decarboxylase 1 2 2
MIRT552698 YWHAH tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein eta 2 2
MIRT554318 SH3GLB1 SH3 domain containing GRB2 like, endophilin B1 2 2
MIRT556358 MAF MAF bZIP transcription factor 2 2
MIRT557772 FRS2 fibroblast growth factor receptor substrate 2 2 2
MIRT558795 CHEK2 checkpoint kinase 2 2 2
MIRT561367 UBXN2B UBX domain protein 2B 2 2
MIRT561673 RAPGEF2 Rap guanine nucleotide exchange factor 2 2 2
MIRT567898 CSNK1A1 casein kinase 1 alpha 1 2 2
MIRT568456 ARPP19 cAMP regulated phosphoprotein 19 2 2
MIRT568838 NBPF12 NBPF member 12 2 2
MIRT568846 VPS53 VPS53, GARP complex subunit 2 2
MIRT568856 NBPF1 NBPF member 1 2 2
MIRT568888 NBPF15 NBPF member 15 2 2
MIRT569331 CDC5L cell division cycle 5 like 2 2
MIRT569388 NBPF11 NBPF member 11 2 2
MIRT569398 NBPF14 NBPF member 14 2 2
MIRT569644 NBPF10 NBPF member 10 2 2
MIRT571582 TROVE2 TROVE domain family member 2 2 2
MIRT573027 NBPF3 NBPF member 3 2 2
MIRT573293 UFM1 ubiquitin fold modifier 1 2 2
MIRT608814 SEPT6 septin 6 2 6
MIRT609046 BACH2 BTB domain and CNC homolog 2 2 6
MIRT609517 RAB3IP RAB3A interacting protein 2 2
MIRT611861 SRRM4 serine/arginine repetitive matrix 4 2 2
MIRT612174 EMC3 ER membrane protein complex subunit 3 2 2
MIRT612714 NR2F6 nuclear receptor subfamily 2 group F member 6 2 4
MIRT613305 ARL6IP6 ADP ribosylation factor like GTPase 6 interacting protein 6 2 4
MIRT616357 SH3TC2 SH3 domain and tetratricopeptide repeats 2 2 2
MIRT632424 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 2
MIRT636005 SAMD15 sterile alpha motif domain containing 15 2 2
MIRT636534 FAM126B family with sequence similarity 126 member B 2 2
MIRT637275 FGFR1OP FGFR1 oncogene partner 2 2
MIRT639131 ZNF726 zinc finger protein 726 2 2
MIRT641257 C8orf46 chromosome 8 open reading frame 46 2 2
MIRT642930 KRTAP5-9 keratin associated protein 5-9 2 2
MIRT644018 NUCB1 nucleobindin 1 2 2
MIRT645021 MAGEB4 MAGE family member B4 2 2
MIRT646790 EVC2 EvC ciliary complex subunit 2 2 2
MIRT647338 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT647975 PDE12 phosphodiesterase 12 2 2
MIRT650610 NEK4 NIMA related kinase 4 2 2
MIRT651052 ZNF579 zinc finger protein 579 2 2
MIRT651593 WDFY2 WD repeat and FYVE domain containing 2 2 2
MIRT652785 TCEANC2 transcription elongation factor A N-terminal and central domain containing 2 2 2
MIRT656450 MAPK6 mitogen-activated protein kinase 6 2 2
MIRT660086 BTD biotinidase 2 2
MIRT661398 OLR1 oxidized low density lipoprotein receptor 1 2 2
MIRT661759 MICA MHC class I polypeptide-related sequence A 2 2
MIRT666402 SH3D19 SH3 domain containing 19 2 2
MIRT668362 FGD4 FYVE, RhoGEF and PH domain containing 4 2 2
MIRT668895 CREG2 cellular repressor of E1A stimulated genes 2 2 2
MIRT669329 BSND barttin CLCNK type accessory beta subunit 2 2
MIRT672369 PDPK1 3-phosphoinositide dependent protein kinase 1 2 2
MIRT686261 YTHDF1 YTH N6-methyladenosine RNA binding protein 1 2 2
MIRT695571 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT701959 MINK1 misshapen like kinase 1 2 2
MIRT702322 KMT2A lysine methyltransferase 2A 2 2
MIRT705209 BRWD1 bromodomain and WD repeat domain containing 1 2 2
MIRT713949 KCTD6 potassium channel tetramerization domain containing 6 2 2
MIRT717082 EBF4 early B-cell factor 4 2 2
MIRT717896 COPS8 COP9 signalosome subunit 8 2 2
MIRT721043 TRIM67 tripartite motif containing 67 2 2
MIRT722194 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT722782 ACADSB acyl-CoA dehydrogenase, short/branched chain 2 2
MIRT725412 HNRNPU heterogeneous nuclear ribonucleoprotein U 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3942-3p Osimertinib 71496458 NSC779217 approved resistant Low Non-Small Cell Lung Cancer tissue
hsa-miR-3942-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-3942-3p Neoadjuvant chemotherapy resistant tissue (breast cancer)

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