pre-miRNA Information
pre-miRNA hsa-mir-4433a   
Genomic Coordinates chr2: 64340759 - 64340839
Description Homo sapiens miR-4433a stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4433a-3p
Sequence 51| ACAGGAGUGGGGGUGGGACAU |71
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs751480515 9 dbSNP
rs557760377 15 dbSNP
rs1479580865 20 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol MAP2K4   
Synonyms JNKK, JNKK1, MAPKK4, MEK4, MKK4, PRKMK4, SAPKK-1, SAPKK1, SEK1, SERK1, SKK1
Description mitogen-activated protein kinase kinase 4
Transcript NM_003010   
Expression
Putative miRNA Targets on MAP2K4
3'UTR of MAP2K4
(miRNA target sites are highlighted)
>MAP2K4|NM_003010|3'UTR
   1 TATCGCTGCTACATCAGACTCTAGAAAAAAGGGCTGAGAGGAAGCAAGACGTAAAGAATTTTCATCCCGTATCACAGTGT
  81 TTTTATTGCTCGCCCAGACACCATGTGCAATAAGATTGGTGTTCGTTTCCATCATGTCTGTATACTCCTGTCACCTAGAA
 161 CGTGCATCCTTGTAATACCTGATTGATCACACAGTGTTAGTGCTGGTCAGAGAGACCTCATCCTGCTCTTTTGTGATGAA
 241 CATATTCATGAAATGTGGAAGTCAGTACGATCAAGTTGTTGACTGTGATTAGATCACATCTTAAATTCATTTCTAGACTC
 321 AAAACCTGGAGATGCAGCTACTGGAATGGTGTTTTGTCAGACTTCCAAATCCTGGAAGGACACAGTGATGAATGTACTAT
 401 GTCTGAACATAGAAACTCGGGCTTGAGTGAGAAGAGCTTGCACAGCCAACGAGACACATTGCCTTCTGGAGCTGGGAGAC
 481 AAAGGAGGAATTTACTTTCTTCACCAAGTGCAATAGATTACTGATGTGATATTCTGTTGCTTTACAGTTACAGTTGATGT
 561 TTGGGGATCGATGTGCTCAGCCAAATTTCCTGTTTGAAATATCATGTTAAATTAGAATGAATTTATCTTTACCAAAAACC
 641 ATGTTGCGTTCAAAGAGGTGAACATTAAAATATAGAGACAGGACAGAATGTGTTCTTTTCTCCTTTACCAGTCCTATTTT
 721 TCAATGGGAAGACTCAGGAGTCTGCCACTTGTCAAAGAAGGTGCTGATCCTAAGAATTTTTCATTCTCAGAATTCGGTGT
 801 GCTGCCAACTTGATGTTCCACCTGCCACAAACCACCAGGACTGAAAGAAGAAAACAGTACAGAAGGCAAAGTTTACAGAT
 881 GTTTTTAATTCTAGTATTTTATCTGGAACAACTTGTAGCAGCTATATATTTCCCCTTGGTCCCAAGCCTGATACTTTAGC
 961 CATCATAACTCACTAACAGGGAGAAGTAGCTAGTAGCAATGTGCCTTGATTGATTAGATAAAGATTTCTAGTAGGCAGCA
1041 AAAGACCAAATCTCAGTTGTTTGCTTCTTGCCATCACTGGTCCAGGTCTTCAGTTTCCGAATCTCTTTCCCTTCCCCTGT
1121 GGTCTATTGTCGCTATGTGACTTGCGCTTAATCCAATATTTTGCCTTTTTTCTATATCAAAAAACCTTTACAGTTAGCAG
1201 GGATGTTCCTTACCAAGGATTTTTAGCCCCAAATCTCTCATATTCGCTAGTGTTTAAAAGGCTAAGAATAGTGGGGCCCA
1281 GCCGATGTGGTAGGTGATAAAGAGGCATCTTTTCTAGAGACACATTGGACCAGATGAGGATCCGAAACGGCAGCCTTTAC
1361 GTTCATCACCTGCTAGAACCTCTCGTAGTCCATCACCATTTCTTGGCATTGGAATTCTACTGGAAAAAAATACAAAAAGC
1441 AAAACAAAACCCTCAGCACTGTTACAAGAGGCCATTTAAGTATCTTGTGCTTCTTCACTTACCCATTAGCCAGGTTCTCA
1521 TTAGGTTTTGCTTGGGCCTCCCTGGCACTGAACCTTAGGCTTTGTATGACAGTGAAGCAGCACTGTGAGTGGTTCAAGCA
1601 CACTGGAATATAAAACAGTCATGGCCTGAGATGCAGGTGATGCCATTACAGAACCAAATCGTGGCACGTATTGCTGTGTC
1681 TCCTCTCAGAGTGACAGTCATAAATACTGTCAAACAATAAAGGGAGAATGGTGCTGTTTAAAGTCACATCCCTGTAAATT
1761 GCAGAATTCAAAAGTGATTATCTCTTTGATCTACTTGCCTCATTTCCCTATCTTCTCCCCCACGGTATCCTAAACTTTAG
1841 ACTTCCCACTGTTCTGAAAGGAGACATTGCTCTATGTCTGCCTTCGACCACAGCAAGCCATCATCCTCCATTGCTCCCGG
1921 GGACTCAAGAGGAATCTGTTTCTCTGCTGTCAACTTCCCATCTGGCTCAGCATAGGGTCACTTTGCCATTATGCAAATGG
2001 AGATAAAAGCAATTCTGACTGTCCAGGAGCTAATCTGACCGTTCTATTGTGTGGATGACCACATAAGAAGGCAATTTTAG
2081 TGTATTAATCATAGATTATTATAAACTATAAACTTAAGGGCAAGGAGTTTATTACAATGTATCTTTATTAAAACAAAAGG
2161 GTGTATAGTGTTCACAAACTGTGAAAATAGTGTAAGAACTGTACATTGTGAGCTCTGGTTATTTTTCTCTTGTACCATAG
2241 AAAAATGTATAAAAATTATCAAAAAGCTAATGTGCAGGGATATTGCCTTATTTGTCTGTAAAAAATGGAGCTCAGTAACA
2321 TAACTGCTTCTTGGAGCTTTGGAATATTTTATCCTGTATTCTTGTTTGAATTCCTCCTCTATTTAAGATATATACATGGA
2401 ATCGAAGTGTTTATGTAATAGTTCTATCCTTTTGCCTGCAGGTCAGTTGTAATAAATCTAGGATGTGATGATGACTTTGT
2481 AATTTGATTTTCTGAAATCAGACCCTGAGAGGGGAAAATCTTAAAGTAAATTACATTAAATTATCTGTGCATTTCACACC
2561 AGGGAAAATGA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uacAGGGUGG----GG---GUGAGGACa 5'
             |:|||:|    |:   :||||||| 
Target 5' cgtTTCCATCATGTCTGTATACTCCTGt 3'
124 - 151 148.00 -19.40
2
miRNA  3' uaCAGGGUGGGGG-UGAGGACa 5'
            |||  ||::|| | ||||| 
Target 5' ttGTCAGACTTCCAAATCCTGg 3'
354 - 375 131.00 -20.30
3
miRNA  3' uacAGGGUGGGG-GUGAGGACa 5'
             |:::|:||: :|:||:|| 
Target 5' ataTTTTATCCTGTATTCTTGt 3'
2344 - 2365 126.00 -15.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN15201838 4 COSMIC
COSN30677854 5 COSMIC
COSN32065052 28 COSMIC
COSN30645882 31 COSMIC
COSN31504262 31 COSMIC
COSN31487689 37 COSMIC
COSN13700681 40 COSMIC
COSN30751905 51 COSMIC
COSN31611911 57 COSMIC
COSN31610256 135 COSMIC
COSN30605360 148 COSMIC
COSN30505182 165 COSMIC
COSN26569892 172 COSMIC
COSN30108106 213 COSMIC
COSN26604435 215 COSMIC
COSN8831289 236 COSMIC
COSN8602349 405 COSMIC
COSN31529127 419 COSMIC
COSN28673266 432 COSMIC
COSN31591115 446 COSMIC
COSN30540989 503 COSMIC
COSN31529669 517 COSMIC
COSN8602350 535 COSMIC
COSN31557405 546 COSMIC
COSN229730 555 COSMIC
COSN31609641 625 COSMIC
COSN31541966 640 COSMIC
COSN31517214 775 COSMIC
COSN31519951 796 COSMIC
COSN26568620 895 COSMIC
COSN21669330 1274 COSMIC
COSN6650014 1329 COSMIC
COSN20188867 1662 COSMIC
COSN1713429 2064 COSMIC
COSN30172676 2068 COSMIC
COSN26508918 2124 COSMIC
COSN20243415 2250 COSMIC
COSN31479761 2314 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs759895365 4 dbSNP
rs201971628 5 dbSNP
rs1160522880 8 dbSNP
rs753044476 20 dbSNP
rs189817203 22 dbSNP
rs1177317456 26 dbSNP
rs750313329 28 dbSNP
rs1440414957 29 dbSNP
rs758163020 36 dbSNP
rs1300906062 42 dbSNP
rs1328873603 43 dbSNP
rs757919548 49 dbSNP
rs1444294698 50 dbSNP
rs368292817 51 dbSNP
rs376888511 52 dbSNP
rs1376940685 66 dbSNP
rs1173871300 69 dbSNP
rs182465459 70 dbSNP
rs991391012 77 dbSNP
rs1447077528 78 dbSNP
rs1217388804 83 dbSNP
rs1471455387 86 dbSNP
rs139724158 89 dbSNP
rs565243535 92 dbSNP
rs185329765 104 dbSNP
rs977552536 111 dbSNP
rs755582365 125 dbSNP
rs754518168 126 dbSNP
rs1277957623 128 dbSNP
rs1162191662 130 dbSNP
rs1413774405 136 dbSNP
rs778639435 138 dbSNP
rs541396988 149 dbSNP
rs1401809070 151 dbSNP
rs1278849405 158 dbSNP
rs1320294154 162 dbSNP
rs933099258 163 dbSNP
rs1051435127 173 dbSNP
rs888807017 181 dbSNP
rs1373192745 188 dbSNP
rs943587891 196 dbSNP
rs190190304 202 dbSNP
rs1386400527 207 dbSNP
rs751116797 209 dbSNP
rs1243587953 211 dbSNP
rs1420115201 225 dbSNP
rs899306678 226 dbSNP
rs773452215 232 dbSNP
rs1283517036 234 dbSNP
rs1217729861 238 dbSNP
rs1447362213 241 dbSNP
rs1283547066 242 dbSNP
rs868621549 242 dbSNP
rs1206757986 243 dbSNP
rs575260150 259 dbSNP
rs1225401711 266 dbSNP
rs1232125778 269 dbSNP
rs1353218981 270 dbSNP
rs1433396058 276 dbSNP
rs1346168731 298 dbSNP
rs1317988135 304 dbSNP
rs1281475093 306 dbSNP
rs1464067275 327 dbSNP
rs993682136 336 dbSNP
rs1203885563 344 dbSNP
rs1397268930 352 dbSNP
rs530205553 357 dbSNP
rs1026780896 366 dbSNP
rs548739275 375 dbSNP
rs1411982419 383 dbSNP
rs1188492312 389 dbSNP
rs1462922916 393 dbSNP
rs1241337469 394 dbSNP
rs1049438 402 dbSNP
rs1185791242 403 dbSNP
rs1237265742 410 dbSNP
rs1470773420 419 dbSNP
rs1273702690 430 dbSNP
rs563431936 438 dbSNP
rs1160822984 439 dbSNP
rs1004076840 444 dbSNP
rs146597820 450 dbSNP
rs183470579 451 dbSNP
rs1270006924 452 dbSNP
rs1177410004 456 dbSNP
rs959395850 457 dbSNP
rs1373883498 464 dbSNP
rs570740002 475 dbSNP
rs1327162125 478 dbSNP
rs1450741872 483 dbSNP
rs991338612 498 dbSNP
rs1021515339 502 dbSNP
rs1336161499 509 dbSNP
rs1410765497 512 dbSNP
rs542637158 513 dbSNP
rs977289694 514 dbSNP
rs1277757102 518 dbSNP
rs924479052 521 dbSNP
rs748422493 522 dbSNP
rs1487424435 523 dbSNP
rs1234141930 525 dbSNP
rs954466763 533 dbSNP
rs1223668429 544 dbSNP
rs1306613460 551 dbSNP
rs188410287 555 dbSNP
rs1320887488 564 dbSNP
rs546555189 566 dbSNP
rs910190495 570 dbSNP
rs1255844126 571 dbSNP
rs1366046920 578 dbSNP
rs943033266 579 dbSNP
rs1037916538 585 dbSNP
rs568012626 597 dbSNP
rs535168966 598 dbSNP
rs1250331492 601 dbSNP
rs920852236 601 dbSNP
rs193245128 603 dbSNP
rs576184750 605 dbSNP
rs1047889723 612 dbSNP
rs906720725 618 dbSNP
rs1177318276 626 dbSNP
rs537272159 633 dbSNP
rs1480024657 643 dbSNP
rs1249242020 648 dbSNP
rs141440676 649 dbSNP
rs774589194 652 dbSNP
rs1055150998 655 dbSNP
rs577441740 658 dbSNP
rs541405516 664 dbSNP
rs1310996638 671 dbSNP
rs1010865686 674 dbSNP
rs1224460814 675 dbSNP
rs1349960962 676 dbSNP
rs1286457201 681 dbSNP
rs1416885311 687 dbSNP
rs1376236303 689 dbSNP
rs1021464279 698 dbSNP
rs764885646 704 dbSNP
rs1049439 706 dbSNP
rs1172239991 708 dbSNP
rs1396920620 710 dbSNP
rs968661720 713 dbSNP
rs28921113 717 dbSNP
rs1031489798 718 dbSNP
rs28921114 726 dbSNP
rs386576571 726 dbSNP
rs796558922 726 dbSNP
rs184089088 737 dbSNP
rs1284597734 738 dbSNP
rs910305030 748 dbSNP
rs1232049382 751 dbSNP
rs1475343987 753 dbSNP
rs1251569890 762 dbSNP
rs11555725 767 dbSNP
rs1482472280 771 dbSNP
rs1262803165 773 dbSNP
rs1217135857 791 dbSNP
rs563793589 796 dbSNP
rs1235193997 797 dbSNP
rs59832266 798 dbSNP
rs1048481585 804 dbSNP
rs1363833074 805 dbSNP
rs186704791 806 dbSNP
rs1271080885 814 dbSNP
rs1431564879 818 dbSNP
rs1386304211 820 dbSNP
rs201362372 821 dbSNP
rs1330387946 827 dbSNP
rs1373923998 828 dbSNP
rs1461503672 833 dbSNP
rs1476264484 842 dbSNP
rs1416789044 847 dbSNP
rs191563418 857 dbSNP
rs1429854132 861 dbSNP
rs1264333760 863 dbSNP
rs1187417045 865 dbSNP
rs1464877789 866 dbSNP
rs1266751778 868 dbSNP
rs1369749772 870 dbSNP
rs1425166109 880 dbSNP
rs1215710668 882 dbSNP
rs1055095564 896 dbSNP
rs1264885041 904 dbSNP
rs1304926393 919 dbSNP
rs1242889701 925 dbSNP
rs895242550 926 dbSNP
rs528384363 927 dbSNP
rs777910390 934 dbSNP
rs1363028104 945 dbSNP
rs183860741 955 dbSNP
rs1043689070 957 dbSNP
rs1441474446 959 dbSNP
rs1389390633 969 dbSNP
rs1160906936 978 dbSNP
rs1463216885 995 dbSNP
rs1443041330 998 dbSNP
rs902541481 999 dbSNP
rs998752463 1000 dbSNP
rs565054493 1003 dbSNP
rs1032024002 1019 dbSNP
rs954528193 1031 dbSNP
rs1266804062 1034 dbSNP
rs1208088180 1040 dbSNP
rs1481771015 1049 dbSNP
rs1252105147 1053 dbSNP
rs1227466480 1056 dbSNP
rs1008742120 1057 dbSNP
rs1305270834 1059 dbSNP
rs1295808707 1060 dbSNP
rs1341925536 1072 dbSNP
rs1330396821 1074 dbSNP
rs1017481412 1077 dbSNP
rs1392590604 1081 dbSNP
rs1396857391 1087 dbSNP
rs530627261 1089 dbSNP
rs568009724 1099 dbSNP
rs188576778 1100 dbSNP
rs1388715301 1102 dbSNP
rs1175878255 1108 dbSNP
rs544055289 1109 dbSNP
rs1209380455 1121 dbSNP
rs1377538282 1122 dbSNP
rs192717367 1123 dbSNP
rs973174439 1127 dbSNP
rs1027311137 1132 dbSNP
rs1448913832 1133 dbSNP
rs1204708462 1135 dbSNP
rs1482172052 1136 dbSNP
rs759629494 1137 dbSNP
rs1344267831 1139 dbSNP
rs1273004488 1145 dbSNP
rs568630474 1146 dbSNP
rs1335849108 1147 dbSNP
rs1389291541 1148 dbSNP
rs1287089839 1157 dbSNP
rs1407647100 1160 dbSNP
rs761285228 1164 dbSNP
rs35163626 1166 dbSNP
rs1445060167 1167 dbSNP
rs1165389249 1171 dbSNP
rs928209569 1172 dbSNP
rs539172755 1175 dbSNP
rs1171349870 1179 dbSNP
rs990939743 1185 dbSNP
rs373075028 1187 dbSNP
rs1386539830 1192 dbSNP
rs1259832318 1193 dbSNP
rs1188074227 1203 dbSNP
rs570995174 1205 dbSNP
rs1049441 1216 dbSNP
rs1049442 1227 dbSNP
rs1441621558 1230 dbSNP
rs1276178698 1233 dbSNP
rs1432379329 1244 dbSNP
rs1319532533 1247 dbSNP
rs1266966506 1251 dbSNP
rs946789596 1260 dbSNP
rs377467531 1263 dbSNP
rs1317766247 1265 dbSNP
rs1446758718 1267 dbSNP
rs1340253930 1269 dbSNP
rs1332562342 1273 dbSNP
rs1049443 1282 dbSNP
rs1402972204 1284 dbSNP
rs1320385884 1285 dbSNP
rs1158570722 1286 dbSNP
rs902487359 1290 dbSNP
rs1420373118 1292 dbSNP
rs935329976 1299 dbSNP
rs1053006065 1308 dbSNP
rs1352990895 1325 dbSNP
rs890359018 1326 dbSNP
rs4792219 1329 dbSNP
rs1465328146 1332 dbSNP
rs140706208 1339 dbSNP
rs1185139556 1340 dbSNP
rs1336323354 1343 dbSNP
rs1289886706 1344 dbSNP
rs1227417275 1345 dbSNP
rs542266426 1349 dbSNP
rs1423135285 1350 dbSNP
rs1282839382 1353 dbSNP
rs1433283338 1357 dbSNP
rs900368453 1361 dbSNP
rs1433459464 1362 dbSNP
rs557420020 1371 dbSNP
rs575793095 1385 dbSNP
rs867970900 1386 dbSNP
rs1169468093 1388 dbSNP
rs1449844751 1392 dbSNP
rs1389542979 1393 dbSNP
rs1272207826 1399 dbSNP
rs546021188 1409 dbSNP
rs1316292529 1424 dbSNP
rs150125305 1433 dbSNP
rs1198462744 1436 dbSNP
rs185127839 1442 dbSNP
rs1449551534 1450 dbSNP
rs1157958844 1451 dbSNP
rs1343339167 1460 dbSNP
rs138715568 1460 dbSNP
rs1297243446 1461 dbSNP
rs1226887500 1462 dbSNP
rs991060540 1464 dbSNP
rs1454261804 1465 dbSNP
rs561848490 1466 dbSNP
rs1331118504 1474 dbSNP
rs916718655 1486 dbSNP
rs1389352561 1487 dbSNP
rs1166430649 1489 dbSNP
rs1304915457 1490 dbSNP
rs1377457996 1491 dbSNP
rs1455569997 1492 dbSNP
rs1425743763 1493 dbSNP
rs528827767 1494 dbSNP
rs1476747022 1499 dbSNP
rs550147826 1505 dbSNP
rs1205437959 1510 dbSNP
rs979445489 1511 dbSNP
rs1274404237 1512 dbSNP
rs190166554 1513 dbSNP
rs1331317306 1525 dbSNP
rs1226713597 1530 dbSNP
rs1267596512 1532 dbSNP
rs1324454535 1540 dbSNP
rs1365600685 1546 dbSNP
rs935461626 1556 dbSNP
rs1410688903 1564 dbSNP
rs182288643 1566 dbSNP
rs891149587 1572 dbSNP
rs944594322 1577 dbSNP
rs1359729229 1584 dbSNP
rs1038984510 1590 dbSNP
rs35027510 1598 dbSNP
rs1409568600 1603 dbSNP
rs1182214518 1607 dbSNP
rs1252669600 1627 dbSNP
rs1472090457 1628 dbSNP
rs1249123975 1636 dbSNP
rs1471318987 1638 dbSNP
rs1484435890 1644 dbSNP
rs1180759126 1645 dbSNP
rs1256898851 1651 dbSNP
rs1210067401 1656 dbSNP
rs548929345 1661 dbSNP
rs994677092 1662 dbSNP
rs751434207 1668 dbSNP
rs886181583 1669 dbSNP
rs142822302 1677 dbSNP
rs1299229349 1679 dbSNP
rs1286663558 1683 dbSNP
rs1004674744 1684 dbSNP
rs1302007012 1688 dbSNP
rs1445768108 1693 dbSNP
rs1408539515 1696 dbSNP
rs1035080828 1698 dbSNP
rs1456244991 1711 dbSNP
rs1166665669 1716 dbSNP
rs753340576 1716 dbSNP
rs553603101 1718 dbSNP
rs1221134145 1725 dbSNP
rs568748222 1730 dbSNP
rs1023843732 1732 dbSNP
rs1482585604 1758 dbSNP
rs536188976 1761 dbSNP
rs189374285 1772 dbSNP
rs980000346 1776 dbSNP
rs1266242857 1780 dbSNP
rs1247302010 1781 dbSNP
rs180737708 1783 dbSNP
rs956984930 1793 dbSNP
rs1049444 1799 dbSNP
rs1049445 1800 dbSNP
rs1432148263 1801 dbSNP
rs752444743 1802 dbSNP
rs1394042006 1805 dbSNP
rs539873890 1811 dbSNP
rs1268948453 1812 dbSNP
rs557978166 1816 dbSNP
rs1481152731 1817 dbSNP
rs912540518 1821 dbSNP
rs572955852 1824 dbSNP
rs532604526 1825 dbSNP
rs1458138986 1828 dbSNP
rs1367499450 1829 dbSNP
rs1164597690 1830 dbSNP
rs1038932037 1833 dbSNP
rs1392347369 1843 dbSNP
rs921854614 1849 dbSNP
rs1464808450 1852 dbSNP
rs561571491 1855 dbSNP
rs1488954694 1857 dbSNP
rs930582226 1864 dbSNP
rs747382916 1866 dbSNP
rs1344058810 1875 dbSNP
rs1049365757 1879 dbSNP
rs886298488 1880 dbSNP
rs1005010123 1883 dbSNP
rs1056235463 1886 dbSNP
rs896115338 1887 dbSNP
rs570349832 1889 dbSNP
rs1011874766 1911 dbSNP
rs1023290482 1914 dbSNP
rs968266822 1917 dbSNP
rs1449446024 1919 dbSNP
rs1428329995 1920 dbSNP
rs1201183255 1923 dbSNP
rs1001146096 1927 dbSNP
rs1031572420 1928 dbSNP
rs1438784557 1930 dbSNP
rs1193268392 1933 dbSNP
rs1484137312 1937 dbSNP
rs956909924 1939 dbSNP
rs1275146136 1947 dbSNP
rs987269021 1954 dbSNP
rs1803981 1956 dbSNP
rs374613560 1958 dbSNP
rs1276530509 1966 dbSNP
rs771371631 1972 dbSNP
rs1330002178 1974 dbSNP
rs912655032 1987 dbSNP
rs1309066008 1988 dbSNP
rs1215388789 1989 dbSNP
rs1429511984 2000 dbSNP
rs1395044798 2004 dbSNP
rs1174841059 2009 dbSNP
rs975405184 2032 dbSNP
rs1377173527 2039 dbSNP
rs1197306206 2040 dbSNP
rs573591463 2041 dbSNP
rs1049001581 2042 dbSNP
rs185090127 2047 dbSNP
rs1280385534 2049 dbSNP
rs940538048 2064 dbSNP
rs1056106567 2065 dbSNP
rs1253785833 2070 dbSNP
rs896230052 2073 dbSNP
rs1245630122 2083 dbSNP
rs1287314201 2085 dbSNP
rs1485966651 2086 dbSNP
rs1011989097 2090 dbSNP
rs562100258 2096 dbSNP
rs1044691395 2097 dbSNP
rs532801531 2098 dbSNP
rs1336514202 2100 dbSNP
rs1397148940 2106 dbSNP
rs1402078729 2108 dbSNP
rs1187924346 2114 dbSNP
rs1392393675 2120 dbSNP
rs1458876055 2124 dbSNP
rs1412724964 2132 dbSNP
rs377631607 2138 dbSNP
rs748132714 2142 dbSNP
rs903555542 2142 dbSNP
rs1239008513 2144 dbSNP
rs1001497643 2150 dbSNP
rs1407592410 2151 dbSNP
rs1441813123 2154 dbSNP
rs1031272395 2155 dbSNP
rs1321599710 2155 dbSNP
rs575309080 2162 dbSNP
rs993299076 2168 dbSNP
rs560013150 2178 dbSNP
rs892592198 2180 dbSNP
rs1266865781 2181 dbSNP
rs146989618 2183 dbSNP
rs1357967186 2191 dbSNP
rs546863393 2200 dbSNP
rs568709937 2203 dbSNP
rs964122032 2205 dbSNP
rs1389911014 2213 dbSNP
rs1382916760 2214 dbSNP
rs1335329990 2219 dbSNP
rs975519554 2230 dbSNP
rs1389507585 2235 dbSNP
rs1319914134 2237 dbSNP
rs1399223938 2238 dbSNP
rs775548386 2247 dbSNP
rs1416187277 2248 dbSNP
rs1163694710 2250 dbSNP
rs1358296663 2253 dbSNP
rs1383091869 2261 dbSNP
rs1190442821 2273 dbSNP
rs1026975007 2275 dbSNP
rs1465263417 2281 dbSNP
rs952760609 2283 dbSNP
rs1213013577 2285 dbSNP
rs1226565951 2288 dbSNP
rs985072606 2291 dbSNP
rs1317041176 2299 dbSNP
rs907792847 2300 dbSNP
rs940637164 2312 dbSNP
rs28921115 2315 dbSNP
rs1245885530 2320 dbSNP
rs1231285529 2321 dbSNP
rs1366528672 2323 dbSNP
rs1338784947 2330 dbSNP
rs1463815434 2336 dbSNP
rs538194763 2356 dbSNP
rs1188266269 2357 dbSNP
rs917770650 2359 dbSNP
rs1351896335 2361 dbSNP
rs1324471491 2371 dbSNP
rs947792171 2377 dbSNP
rs1474038251 2378 dbSNP
rs1162005562 2380 dbSNP
rs1044803816 2390 dbSNP
rs28921116 2392 dbSNP
rs771988128 2393 dbSNP
rs551297905 2397 dbSNP
rs1401423730 2404 dbSNP
rs569233824 2405 dbSNP
rs936355059 2419 dbSNP
rs1053083628 2427 dbSNP
rs892713513 2430 dbSNP
rs1272909578 2446 dbSNP
rs1213267304 2447 dbSNP
rs773074624 2461 dbSNP
rs537682530 2479 dbSNP
rs1337104125 2492 dbSNP
rs1008936178 2494 dbSNP
rs1391598759 2501 dbSNP
rs1342063571 2502 dbSNP
rs1309667915 2506 dbSNP
rs539463944 2506 dbSNP
rs1283569342 2507 dbSNP
rs558202320 2510 dbSNP
rs76996718 2512 dbSNP
rs1019775986 2518 dbSNP
rs1373426420 2521 dbSNP
rs1168234794 2527 dbSNP
rs191257357 2530 dbSNP
rs183170582 2531 dbSNP
rs1190100164 2536 dbSNP
rs1027073111 2540 dbSNP
rs952786535 2541 dbSNP
rs1052139112 2542 dbSNP
rs982794513 2544 dbSNP
rs1016048078 2548 dbSNP
rs1232599444 2552 dbSNP
rs777773191 2559 dbSNP
rs1203072758 2562 dbSNP
rs1314410484 2568 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' uacAGGGUGG----GG---GUGAGGACa 5'
             |:|||:|    |:   :||||||| 
Target 5' --uUUCCAUCAUGUCUGUAUACUCCUG- 3'
1 - 25
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000415385.3 | 3UTR | UUUCCAUCAUGUCUGUAUACUCCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
256 hsa-miR-4433a-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT088097 SEPT2 septin 2 2 2
MIRT143134 MGRN1 mahogunin ring finger 1 2 2
MIRT153912 NCOA3 nuclear receptor coactivator 3 2 2
MIRT154894 GNAS GNAS complex locus 2 4
MIRT200996 ZNF805 zinc finger protein 805 2 2
MIRT215729 C5ORF51 chromosome 5 open reading frame 51 2 10
MIRT235593 POFUT1 protein O-fucosyltransferase 1 2 2
MIRT263250 SGPL1 sphingosine-1-phosphate lyase 1 2 2
MIRT317951 CDC5L cell division cycle 5 like 2 4
MIRT325572 HIATL1 major facilitator superfamily domain containing 14B 2 4
MIRT354739 LSM3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated 2 2
MIRT444552 UBE2D3 ubiquitin conjugating enzyme E2 D3 2 4
MIRT446978 SUSD5 sushi domain containing 5 2 2
MIRT451036 ZNF610 zinc finger protein 610 2 2
MIRT451596 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT452025 NLRP6 NLR family pyrin domain containing 6 2 2
MIRT452594 CA6 carbonic anhydrase 6 2 2
MIRT452768 TCEA3 transcription elongation factor A3 2 4
MIRT452959 ZNF844 zinc finger protein 844 2 2
MIRT453191 ACSF2 acyl-CoA synthetase family member 2 2 2
MIRT453382 RHD Rh blood group D antigen 2 2
MIRT453685 CEBPD CCAAT/enhancer binding protein delta 2 2
MIRT455272 DDX39B DExD-box helicase 39B 2 8
MIRT455346 BAMBI BMP and activin membrane bound inhibitor 2 2
MIRT456494 SERAC1 serine active site containing 1 2 2
MIRT456585 NID1 nidogen 1 2 2
MIRT456888 DDA1 DET1 and DDB1 associated 1 2 2
MIRT457123 APOLD1 apolipoprotein L domain containing 1 2 2
MIRT457852 ZNF324B zinc finger protein 324B 2 2
MIRT457987 APAF1 apoptotic peptidase activating factor 1 2 2
MIRT459278 APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F 2 2
MIRT459625 SLC25A33 solute carrier family 25 member 33 2 2
MIRT459715 SGK494 uncharacterized serine/threonine-protein kinase SgK494 2 2
MIRT460057 RPL22L1 ribosomal protein L22 like 1 2 2
MIRT460182 UNK unkempt family zinc finger 2 6
MIRT460288 PDE11A phosphodiesterase 11A 2 2
MIRT460841 EGF epidermal growth factor 2 4
MIRT460860 TBC1D19 TBC1 domain family member 19 2 2
MIRT461519 EMC7 ER membrane protein complex subunit 7 2 2
MIRT461729 SLC27A1 solute carrier family 27 member 1 2 4
MIRT461821 SNAP23 synaptosome associated protein 23 2 2
MIRT462066 CCDC77 coiled-coil domain containing 77 2 4
MIRT462084 MSANTD2 Myb/SANT DNA binding domain containing 2 2 2
MIRT462508 MTFMT mitochondrial methionyl-tRNA formyltransferase 2 10
MIRT464239 VCP valosin containing protein 2 2
MIRT465316 TRAF5 TNF receptor associated factor 5 2 2
MIRT466549 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 2
MIRT467128 SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 2 8
MIRT468091 SHCBP1 SHC binding and spindle associated 1 2 2
MIRT469630 RAD21 RAD21 cohesin complex component 2 6
MIRT471097 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT472704 MYBL1 MYB proto-oncogene like 1 2 2
MIRT472830 MTMR10 myotubularin related protein 10 2 2
MIRT472872 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT472895 MTDH metadherin 2 2
MIRT473728 MAPK1 mitogen-activated protein kinase 1 2 2
MIRT473859 MAP2K4 mitogen-activated protein kinase kinase 4 2 2
MIRT474047 LONRF1 LON peptidase N-terminal domain and ring finger 1 2 2
MIRT474297 LAMC1 laminin subunit gamma 1 2 2
MIRT474658 KLF13 Kruppel like factor 13 2 2
MIRT475234 IKZF3 IKAROS family zinc finger 3 2 2
MIRT475500 HSP90B1 heat shock protein 90 beta family member 1 2 2
MIRT475742 HERPUD1 homocysteine inducible ER protein with ubiquitin like domain 1 2 4
MIRT475793 HDGF heparin binding growth factor 2 2
MIRT477254 ERGIC2 ERGIC and golgi 2 2 2
MIRT478228 DDX52 DExD-box helicase 52 2 2
MIRT478393 DCTN5 dynactin subunit 5 2 2
MIRT478754 CS citrate synthase 2 2
MIRT478827 CRKL CRK like proto-oncogene, adaptor protein 2 4
MIRT480234 C9orf41 carnosine N-methyltransferase 1 2 2
MIRT480597 BTRC beta-transducin repeat containing E3 ubiquitin protein ligase 2 2
MIRT484121 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT484689 PACSIN1 protein kinase C and casein kinase substrate in neurons 1 2 2
MIRT486331 C11orf54 chromosome 11 open reading frame 54 2 4
MIRT488599 FAM3C family with sequence similarity 3 member C 2 8
MIRT488833 MRRF mitochondrial ribosome recycling factor 2 2
MIRT492523 RAB15 RAB15, member RAS oncogene family 2 4
MIRT493632 HIC2 HIC ZBTB transcriptional repressor 2 2 2
MIRT500026 ABCF2 ATP binding cassette subfamily F member 2 2 8
MIRT501075 SMAD7 SMAD family member 7 2 8
MIRT503094 BTG2 BTG anti-proliferation factor 2 2 4
MIRT503336 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT505465 STMN1 stathmin 1 2 4
MIRT505726 SERTAD3 SERTA domain containing 3 2 4
MIRT509333 MS4A4A membrane spanning 4-domains A4A 2 2
MIRT509978 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 4
MIRT513068 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT513446 EMP1 epithelial membrane protein 1 2 6
MIRT513736 PSD3 pleckstrin and Sec7 domain containing 3 2 4
MIRT513996 CENPQ centromere protein Q 2 4
MIRT516538 MIXL1 Mix paired-like homeobox 2 2
MIRT517606 SAV1 salvador family WW domain containing protein 1 2 2
MIRT518064 CEP89 centrosomal protein 89 2 2
MIRT518119 RNMTL1 mitochondrial rRNA methyltransferase 3 2 2
MIRT518325 WDR92 WD repeat domain 92 2 2
MIRT519048 ABCB11 ATP binding cassette subfamily B member 11 2 2
MIRT520972 SPPL2A signal peptide peptidase like 2A 2 4
MIRT521359 RPL35A ribosomal protein L35a 2 2
MIRT523359 GTF3C6 general transcription factor IIIC subunit 6 2 2
MIRT523801 FAM63A MINDY lysine 48 deubiquitinase 1 2 2
MIRT524622 C7orf73 short transmembrane mitochondrial protein 1 2 2
MIRT525550 PHB2 prohibitin 2 2 4
MIRT529709 ZBTB49 zinc finger and BTB domain containing 49 2 2
MIRT531605 PLEKHA6 pleckstrin homology domain containing A6 2 2
MIRT532387 UMPS uridine monophosphate synthetase 2 2
MIRT534468 SCD stearoyl-CoA desaturase 2 4
MIRT537546 ETNK1 ethanolamine kinase 1 2 2
MIRT541619 C11orf31 selenoprotein H 2 2
MIRT548380 ENPP5 ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative) 2 4
MIRT549523 HDDC2 HD domain containing 2 2 2
MIRT549774 SOD2 superoxide dismutase 2 2 2
MIRT550578 SLC2A5 solute carrier family 2 member 5 2 2
MIRT551498 CENPN centromere protein N 2 4
MIRT552301 ITGA3 integrin subunit alpha 3 2 2
MIRT555400 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT556399 LUC7L LUC7 like 2 2
MIRT557047 HOXB3 homeobox B3 2 2
MIRT558072 ERO1L endoplasmic reticulum oxidoreductase 1 alpha 1 2
MIRT559659 AHCYL2 adenosylhomocysteinase like 2 2 2
MIRT561239 ZNF354B zinc finger protein 354B 2 2
MIRT566899 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT568786 FAM120B family with sequence similarity 120B 2 2
MIRT574014 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT574885 Dnajc6 DnaJ heat shock protein family (Hsp40) member C6 2 2
MIRT575243 Serping1 serine (or cysteine) peptidase inhibitor, clade G, member 1 2 2
MIRT576194 Vsig2 V-set and immunoglobulin domain containing 2 2 2
MIRT576309 Acbd7 acyl-Coenzyme A binding domain containing 7 2 2
MIRT576484 Lhx4 LIM homeobox protein 4 2 3
MIRT576646 Mill2 MHC I like leukocyte 2 1 1
MIRT576708 Kras Kirsten rat sarcoma viral oncogene homolog 2 2
MIRT576855 Socs6 suppressor of cytokine signaling 6 2 2
MIRT576950 Aldoa aldolase A, fructose-bisphosphate 2 2
MIRT617133 ZNF556 zinc finger protein 556 2 4
MIRT617928 ZNF783 zinc finger family member 783 2 2
MIRT618981 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT621100 SIX3 SIX homeobox 3 2 2
MIRT624537 BROX BRO1 domain and CAAX motif containing 2 2
MIRT625663 C2orf48 chromosome 2 open reading frame 48 2 2
MIRT627059 DCTN6 dynactin subunit 6 2 2
MIRT628319 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT630859 ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 2 2
MIRT632295 TMEM65 transmembrane protein 65 2 2
MIRT634115 ZNF207 zinc finger protein 207 2 2
MIRT634736 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT635655 NDST3 N-deacetylase and N-sulfotransferase 3 2 2
MIRT635772 PDCL3 phosducin like 3 2 2
MIRT635911 LILRA2 leukocyte immunoglobulin like receptor A2 2 2
MIRT636365 OGFRL1 opioid growth factor receptor like 1 2 4
MIRT637251 GLRX2 glutaredoxin 2 2 2
MIRT638705 FZD4 frizzled class receptor 4 2 2
MIRT639640 PREX2 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 2 2
MIRT639676 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT642267 SMIM17 small integral membrane protein 17 2 2
MIRT642372 ZNF581 zinc finger protein 581 2 2
MIRT643545 SLC25A17 solute carrier family 25 member 17 2 2
MIRT647994 PDE12 phosphodiesterase 12 2 2
MIRT649094 NOM1 nucleolar protein with MIF4G domain 1 2 2
MIRT650993 ZNF770 zinc finger protein 770 2 2
MIRT651956 UBE2N ubiquitin conjugating enzyme E2 N 2 2
MIRT652977 SUN2 Sad1 and UNC84 domain containing 2 2 2
MIRT654389 RBM12B RNA binding motif protein 12B 2 2
MIRT655637 OLFML2A olfactomedin like 2A 2 2
MIRT655729 NRXN3 neurexin 3 2 2
MIRT658171 FCHSD1 FCH and double SH3 domains 1 2 2
MIRT660937 ACOX1 acyl-CoA oxidase 1 2 2
MIRT662112 CERKL ceramide kinase like 2 2
MIRT662302 MPV17L MPV17 mitochondrial inner membrane protein like 2 2
MIRT662993 TMEM59 transmembrane protein 59 2 2
MIRT663071 SFR1 SWI5 dependent homologous recombination repair protein 1 2 2
MIRT663704 ABHD17B abhydrolase domain containing 17B 2 2
MIRT663864 MUC20 mucin 20, cell surface associated 2 2
MIRT665185 HAUS5 HAUS augmin like complex subunit 5 2 4
MIRT665402 WEE1 WEE1 G2 checkpoint kinase 2 2
MIRT665688 TNPO3 transportin 3 2 2
MIRT665795 TMEM170A transmembrane protein 170A 2 2
MIRT665847 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT666999 PDPN podoplanin 2 2
MIRT667598 LIPC lipase C, hepatic type 2 2
MIRT668576 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 4
MIRT670960 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT671187 ZNF891 zinc finger protein 891 2 2
MIRT671739 ZNF451 zinc finger protein 451 2 2
MIRT672745 ZNF585B zinc finger protein 585B 2 4
MIRT673446 ZNF583 zinc finger protein 583 2 2
MIRT679843 GPR75 G protein-coupled receptor 75 2 2
MIRT680556 ZNF584 zinc finger protein 584 2 2
MIRT680661 C1orf210 chromosome 1 open reading frame 210 2 2
MIRT681285 RFC2 replication factor C subunit 2 2 2
MIRT683264 ZNF329 zinc finger protein 329 2 2
MIRT684519 C1orf174 chromosome 1 open reading frame 174 2 2
MIRT685065 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685157 DTWD2 DTW domain containing 2 2 2
MIRT685168 ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit 2 2
MIRT685470 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT686001 NEK4 NIMA related kinase 4 2 2
MIRT687027 RNF24 ring finger protein 24 2 2
MIRT687543 MOB1B MOB kinase activator 1B 2 2
MIRT687592 MANEAL mannosidase endo-alpha like 2 2
MIRT687753 KIAA1328 KIAA1328 2 2
MIRT688050 GLUL glutamate-ammonia ligase 2 2
MIRT688374 ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 2 2
MIRT688802 CBFA2T3 CBFA2/RUNX1 translocation partner 3 2 2
MIRT688957 ATXN3 ataxin 3 2 2
MIRT689281 C5AR2 complement component 5a receptor 2 2 2
MIRT689988 NNMT nicotinamide N-methyltransferase 2 2
MIRT689997 MMP17 matrix metallopeptidase 17 2 2
MIRT690014 LUZP2 leucine zipper protein 2 2 2
MIRT690161 ELP3 elongator acetyltransferase complex subunit 3 2 2
MIRT690379 ZSWIM7 zinc finger SWIM-type containing 7 2 2
MIRT690563 MICA MHC class I polypeptide-related sequence A 2 2
MIRT691891 EVC EvC ciliary complex subunit 1 2 2
MIRT693107 SCNM1 sodium channel modifier 1 2 2
MIRT693832 ZFP64 ZFP64 zinc finger protein 2 2
MIRT694105 ZNF446 zinc finger protein 446 2 2
MIRT694179 ZNF486 zinc finger protein 486 2 2
MIRT694475 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT694998 GGA2 golgi associated, gamma adaptin ear containing, ARF binding protein 2 2 2
MIRT695031 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT695163 TCTN2 tectonic family member 2 2 2
MIRT695525 SLC25A34 solute carrier family 25 member 34 2 2
MIRT696067 ZNF264 zinc finger protein 264 2 2
MIRT696616 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT696661 AGXT2 alanine--glyoxylate aminotransferase 2 2 2
MIRT696705 PNPO pyridoxamine 5'-phosphate oxidase 2 2
MIRT697173 INMT indolethylamine N-methyltransferase 2 2
MIRT697303 ZNF652 zinc finger protein 652 2 2
MIRT697491 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT698657 TERF2 telomeric repeat binding factor 2 2 2
MIRT699042 SOAT1 sterol O-acyltransferase 1 2 2
MIRT699185 SLX4IP SLX4 interacting protein 2 2
MIRT699598 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 2
MIRT700150 RNF115 ring finger protein 115 2 2
MIRT700720 PNO1 partner of NOB1 homolog 2 2
MIRT700870 PER2 period circadian clock 2 2 2
MIRT700912 PDXK pyridoxal kinase 2 2
MIRT701095 PAPOLG poly(A) polymerase gamma 2 2
MIRT701194 OTUD3 OTU deubiquitinase 3 2 2
MIRT702203 LPP LIM domain containing preferred translocation partner in lipoma 2 2
MIRT702272 LHX4 LIM homeobox 4 2 3
MIRT703125 GPRC5A G protein-coupled receptor class C group 5 member A 2 2
MIRT703252 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT703262 GNL3L G protein nucleolar 3 like 2 2
MIRT703440 FYTTD1 forty-two-three domain containing 1 2 2
MIRT704321 DCUN1D5 defective in cullin neddylation 1 domain containing 5 2 2
MIRT704393 CTSS cathepsin S 2 2
MIRT704483 CPT1A carnitine palmitoyltransferase 1A 2 2
MIRT704880 CCSER2 coiled-coil serine rich protein 2 2 2
MIRT704926 CCDC36 coiled-coil domain containing 36 2 2
MIRT705175 BZW1 basic leucine zipper and W2 domains 1 2 2
MIRT706561 EIF2AK2 eukaryotic translation initiation factor 2 alpha kinase 2 2 2
MIRT707048 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT711497 PGD phosphogluconate dehydrogenase 2 2
MIRT716644 EPGN epithelial mitogen 2 2
MIRT720083 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT722288 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT725468 GRAP2 GRB2-related adaptor protein 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4433a Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-4433a Paclitaxel 36314 NSC125973 approved resistant cell line (W1)
hsa-mir-4433a Vincristine 5978 approved resistant cell line (W1)
hsa-mir-4433a Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-4433a-3p Platinum 23939 sensitive High Ovarian Cancer tissue
hsa-miR-4433a-3p Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant High Pancreatic Cancer cell line (BxPC-3)
hsa-miR-4433a-3p Paclitaxel 36314 NSC125973 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-4433a-3p Imatinib 5291 NSC743414 approved sensitive High Chronic Myelogenous Leukemia tissue
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (A2780CIS)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (CAL-27) (mitochondrial RNA)
hsa-miR-4433a-3p Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant cell line (CP20)
hsa-miR-4433a-3p Cisplatin 5460033 NSC119875 approved resistant cell line (CIS)
hsa-miR-4433a-3p Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4433a-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-4433a-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)

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