pre-miRNA Information
pre-miRNA hsa-mir-1273h   
Genomic Coordinates chr16: 24203116 - 24203231
Description Homo sapiens miR-1273h stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-1273h-5p
Sequence 33| CUGGGAGGUCAAGGCUGCAGU |53
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1028034199 14 dbSNP
rs542383563 18 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol LRRC20   
Synonyms -
Description leucine rich repeat containing 20
Transcript NM_018205   
Other Transcripts NM_018239 , NM_207119   
Expression
Putative miRNA Targets on LRRC20
3'UTR of LRRC20
(miRNA target sites are highlighted)
>LRRC20|NM_018205|3'UTR
   1 GCCACCCTCCTCATGCCCACCCAGCAAGGGACAGAGGCCACAGGCCTGGAACCCTGGAAGGGAGGGAGGCCCATGGGAGG
  81 CCAAGCCTGGGGGCTGGGGGCGGGTGGGCCGAGCAGCACGTGGTGGGTGGGGTGCAGCTGGTCTGGATAGATAGCTTACA
 161 GCAGTAGTGGGCTCTGGAATGCCCAAGGGAAGAGGCAAGGTGGGGCCTGCAGCCTGGACTCGGCACTCACAGCTGCTGTG
 241 CAAACTCAGGCAGATCTCCTGCCCTCTCTGAGCCTTGTCACTTGAAAAAAACAGGACCCTTTCCCTCCTTTGGGCTCCCT
 321 GGAGGTTTTTAAGCAGTACGTGCCTCCAAGTTACCTCCAGATCAGCAGGCACAGGTGGGCATTGCCAGGTATTTTCTGAG
 401 CCCCTGCGGGTTTGAGGCCTTGTTTTTAGTGCTGAGAGCCAGTTGCTGCCCTGAGAAGAGAAGACAACCTCCATCTATTT
 481 ATTGCTTCCTGAGAACTGACCTGGATGCGGCCCTCTGCAGGGCCCAGTCTTCAGTCCTGTGGTCCCTGGACTGGTGGGAA
 561 CCTGAACTAGGAGTCCTGGGAGAGCTGTGGTGGGAATATGGGCTGGCACTGCTGCAGGGCAAGAACATTCATGTAGGAGC
 641 CCGAGGACCAGCAGGCTGGGAATGGGGAGCAAGTCACGTCAGCTCTGTCATTCCCCACAGTTAACAAATTGGCGGGGTGG
 721 GAAGTCCTGAGTGCTCCGTCCCTCTAGCATCACTCCTGAGCTGCGGGAGAGGTGGCCCAGAGAACAGCAGAGTCAGTTAC
 801 ACCTGCAGCTCTTGTCTAAAGTGATTAGATGGCCACCCTCACCACTGTCCAGTCCAGCAGCAGCCTGGCTGCCTTGTCAT
 881 GGCCTCCTGGGGGCAGAAGGCGATGTGGACCACGGGATTTGTAGCCAGCCAGCTCCCAGGCCAACGCCCAAAGCCCTGAT
 961 GACCTGGTTCTTCTGAGGCCCTCAACCTGGCATCTTAGGGTATGGTCAGGCAACAGGGTGACCAGCTGTCCTGGTTTCCC
1041 AGGACATGGAACTTTCAATGCTAAAACTGGGACAGTACCCAGCAAGTGGGGATGGTTGGTCCCCTACCAGGAGAGGGCCT
1121 GGGGCTCTTGCTTCCCGAGAACGCCTGTGGCTTGAAGAACCTTGACTGCTTGGTCCTCAGGTATCTACCTCCCACCTTCT
1201 CCTCATCTGTGGAGCAAGCCAACTCAGTGCCCCAGACCCCACCTGATCTGCATCTTTGTTTGCATCTCCAGAGACACCTG
1281 AGGCCCCAGAGCTTGAGGCAAAGCCAGGCCGTCCAAATCCTGTGTGCCGTGGACGAGTGGCCACTTTACTACTCCTAAGG
1361 CTAAGATGTTGAGAGCTCAGACCACTGCTCAGAGCAGTAATCCCTGCTCAGAATGCTCCCAGTTCCCTCGTCCCTGCCCA
1441 GGTCTCTTGTCTCTTGGGAAGGAACTGATAGGTCGGGCCATTGTTGGGCCATCACTGAGCGCTCAGTATCTCAAGAGACT
1521 CTGTTCATTCTGCTCGTATCCCAAGGCCTGGTTGGTCAAACTCTGGGCAAAGGGTTTTCAGGATGAGGAGGTCAAGACAG
1601 GATCTCCAGAGCTACCGAGTTCATCTGTGGGTGTTGGGGGCAAGTGGGGGCTGAAGTCCTGTGCAGGCTGCGCTGGCCCC
1681 ACCTGCCTTGTGCCCTGGAGTGGGGTTTCTCCTTGTTGAAGAAGAGGCATCCTTCTCTGATGTGCACAAACACAATGTAT
1761 GACCAGAGCCTTGCAACTCAAAGTGTGGTCTGTGGACCAGCAGCGGCAGTGACACCTGGGAGCTTGTTAGGAATGCAGAG
1841 TCTAGGCCTCACCCTATACCTCCCGACTCAGACCCTGCATTTTAGCAAGACCCCCAGCTGATTCCTATAAGCACTTTAGA
1921 GTTTGAGAAGCAAGGACCTAGGCTGGGGATGTCCTCCGAGCAGAGGGTGAAGTTTCTCTCAGTTCTCTCCCTGCCACTTC
2001 CAGGGATCTGAGCCTGTGCTCAGCCTCCTCCCTAACCCACCCTGGGAGACACTTGGCCTGTTAGATTGTTCCAGAGTCTG
2081 CATGGCACTCCTGAAGAAGGGAGTGTGACCTGCAGTCACCAGGAGATGAGGGTTAGGTGTGCCCAGCCCTCCAGACCCGG
2161 CCTTTCTGGTTAACCCCTGCATGCCAAGCTGCCTGCTGCCCCAGGTCCTCACCTCAGGCCTTTGAAGGGGCAGCTTCTGG
2241 AAGTTGTTTTCTCCTCTGCTTGGAGAGTTTGCCCTTGTCTGTCTTGGAAAGTGTGGGCAGCCACAGATGCCCCCAAATCA
2321 GAGCTCACAGTGAGTGAGCCCCTAAGCTTCAGTCTGCAATAAAGAATGCATTGGTTTCATCTGCAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ugacGU-CGGAACUGGAGGGUc 5'
              || |: |  |||||||| 
Target 5' tcctCAGGTATCTACCTCCCAc 3'
1174 - 1195 149.00 -15.50
2
miRNA  3' ugacGUCGGAACUGGAGGGUc 5'
              || |||  |||||||: 
Target 5' gcctCACCCTATACCTCCCGa 3'
1846 - 1866 145.00 -18.00
3
miRNA  3' ugacGUCGGAACUGGAGGGuc 5'
              ||||||   ||||||  
Target 5' tgctCAGCCT---CCTCCCta 3'
2017 - 2034 138.00 -20.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30153335 53 COSMIC
COSN6605288 93 COSMIC
COSN30496161 102 COSMIC
COSN6605287 111 COSMIC
COSN24415058 120 COSMIC
COSN23987622 718 COSMIC
COSN5821081 973 COSMIC
COSN6981320 1378 COSMIC
COSN16095110 1586 COSMIC
COSN32057856 2016 COSMIC
COSN32057855 2028 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1354876173 3 dbSNP
rs923743761 6 dbSNP
rs1404842978 7 dbSNP
rs1296882860 9 dbSNP
rs1410762892 10 dbSNP
rs1429686221 17 dbSNP
rs762932071 19 dbSNP
rs1352745459 21 dbSNP
rs1168665259 24 dbSNP
rs977955575 25 dbSNP
rs1450835707 28 dbSNP
rs1366326584 29 dbSNP
rs10740336 31 dbSNP
rs755820500 37 dbSNP
rs1415686273 38 dbSNP
rs999122588 40 dbSNP
rs753471122 41 dbSNP
rs1482686528 44 dbSNP
rs907483992 45 dbSNP
rs1230343806 52 dbSNP
rs1261803082 56 dbSNP
rs1461204600 63 dbSNP
rs1019013859 67 dbSNP
rs1045408764 69 dbSNP
rs577366372 70 dbSNP
rs1186113626 73 dbSNP
rs558927091 85 dbSNP
rs3750765 93 dbSNP
rs142087546 94 dbSNP
rs995053071 100 dbSNP
rs1385785595 101 dbSNP
rs899416592 101 dbSNP
rs941167827 102 dbSNP
rs1363167263 109 dbSNP
rs1037060037 110 dbSNP
rs10999250 111 dbSNP
rs1322912996 116 dbSNP
rs906725448 118 dbSNP
rs1046130645 119 dbSNP
rs947827943 120 dbSNP
rs554973085 123 dbSNP
rs916221743 127 dbSNP
rs113287533 136 dbSNP
rs1480753284 143 dbSNP
rs936555264 147 dbSNP
rs1417651893 152 dbSNP
rs923871305 155 dbSNP
rs1173092968 187 dbSNP
rs978440558 200 dbSNP
rs1159125194 203 dbSNP
rs1346604321 205 dbSNP
rs965222306 221 dbSNP
rs568371449 222 dbSNP
rs1244895812 224 dbSNP
rs550852333 226 dbSNP
rs1285732659 230 dbSNP
rs761885727 231 dbSNP
rs1264945840 238 dbSNP
rs1213947580 247 dbSNP
rs1223294477 251 dbSNP
rs1285000505 263 dbSNP
rs1318981555 268 dbSNP
rs907452729 268 dbSNP
rs1279731841 270 dbSNP
rs1490451225 271 dbSNP
rs1201580620 273 dbSNP
rs953449369 277 dbSNP
rs1231120888 281 dbSNP
rs1221453695 289 dbSNP
rs532347816 290 dbSNP
rs879157414 292 dbSNP
rs1409501162 299 dbSNP
rs1422404916 300 dbSNP
rs1162532410 313 dbSNP
rs11542086 314 dbSNP
rs1274740906 315 dbSNP
rs994836442 315 dbSNP
rs1325862862 317 dbSNP
rs1400756369 318 dbSNP
rs182910046 319 dbSNP
rs894144147 326 dbSNP
rs765418257 331 dbSNP
rs1296591639 334 dbSNP
rs1399591041 339 dbSNP
rs546422767 340 dbSNP
rs759551390 343 dbSNP
rs1314616327 344 dbSNP
rs886882127 349 dbSNP
rs1224452310 352 dbSNP
rs1270576760 354 dbSNP
rs1437213358 356 dbSNP
rs1046876382 371 dbSNP
rs776846890 374 dbSNP
rs574536639 375 dbSNP
rs1442227029 376 dbSNP
rs933859728 380 dbSNP
rs922487633 382 dbSNP
rs528148574 385 dbSNP
rs560667173 387 dbSNP
rs1005570812 394 dbSNP
rs1165388536 404 dbSNP
rs150831960 407 dbSNP
rs548370668 409 dbSNP
rs910567940 423 dbSNP
rs1047015674 438 dbSNP
rs530534372 445 dbSNP
rs1383842887 459 dbSNP
rs563184203 460 dbSNP
rs1338496241 462 dbSNP
rs142023048 469 dbSNP
rs936326126 471 dbSNP
rs1459872652 477 dbSNP
rs1202517107 506 dbSNP
rs577501736 508 dbSNP
rs559175836 509 dbSNP
rs1042281915 515 dbSNP
rs943964562 517 dbSNP
rs537664764 520 dbSNP
rs866189582 521 dbSNP
rs985292273 522 dbSNP
rs1278557700 526 dbSNP
rs1175829021 544 dbSNP
rs1406877004 565 dbSNP
rs1219716430 576 dbSNP
rs1398072345 578 dbSNP
rs1316471158 583 dbSNP
rs1320138542 584 dbSNP
rs932512513 590 dbSNP
rs1431205136 591 dbSNP
rs1013180693 593 dbSNP
rs1321354040 597 dbSNP
rs1222803814 598 dbSNP
rs959242041 601 dbSNP
rs1346503305 603 dbSNP
rs1203070222 610 dbSNP
rs1218069739 611 dbSNP
rs1447154209 612 dbSNP
rs562547591 630 dbSNP
rs1265736810 632 dbSNP
rs1479763938 642 dbSNP
rs370138065 643 dbSNP
rs78379698 648 dbSNP
rs1005668710 650 dbSNP
rs1467656966 666 dbSNP
rs1156822848 667 dbSNP
rs886849560 668 dbSNP
rs1286172528 677 dbSNP
rs1046804779 678 dbSNP
rs997933174 683 dbSNP
rs1299858251 684 dbSNP
rs963392698 685 dbSNP
rs1404332822 692 dbSNP
rs1283836039 693 dbSNP
rs748857460 700 dbSNP
rs374037243 711 dbSNP
rs1333433524 712 dbSNP
rs552428137 713 dbSNP
rs117242234 714 dbSNP
rs1016423720 718 dbSNP
rs915168905 722 dbSNP
rs1025105195 737 dbSNP
rs191676563 738 dbSNP
rs924656959 744 dbSNP
rs1199072198 763 dbSNP
rs895345496 764 dbSNP
rs187077636 765 dbSNP
rs1000588159 769 dbSNP
rs1470659030 770 dbSNP
rs971532218 774 dbSNP
rs1472019021 796 dbSNP
rs1363547527 806 dbSNP
rs917411821 820 dbSNP
rs1303466231 824 dbSNP
rs546357428 831 dbSNP
rs902145452 836 dbSNP
rs1199851565 861 dbSNP
rs1389558131 861 dbSNP
rs577241074 864 dbSNP
rs1241940520 868 dbSNP
rs943929477 871 dbSNP
rs1358195376 879 dbSNP
rs1266351907 880 dbSNP
rs528281622 889 dbSNP
rs1194552559 894 dbSNP
rs1322391472 896 dbSNP
rs1315125934 899 dbSNP
rs1249993871 900 dbSNP
rs566978106 901 dbSNP
rs1025322404 902 dbSNP
rs1383623673 903 dbSNP
rs1049708166 909 dbSNP
rs779299484 911 dbSNP
rs548667527 913 dbSNP
rs74139015 914 dbSNP
rs558562042 919 dbSNP
rs768144067 921 dbSNP
rs1297522075 922 dbSNP
rs1397049562 927 dbSNP
rs1448352857 932 dbSNP
rs1007176643 943 dbSNP
rs893716613 945 dbSNP
rs114546837 946 dbSNP
rs1313932694 955 dbSNP
rs935949341 959 dbSNP
rs776782501 961 dbSNP
rs1251257042 962 dbSNP
rs1179701850 965 dbSNP
rs1458553154 967 dbSNP
rs1200639804 973 dbSNP
rs1241306724 974 dbSNP
rs1441927234 987 dbSNP
rs1182637626 1002 dbSNP
rs1258075173 1003 dbSNP
rs983861921 1008 dbSNP
rs924625848 1009 dbSNP
rs1041768130 1017 dbSNP
rs950095408 1019 dbSNP
rs917360282 1021 dbSNP
rs1173697513 1028 dbSNP
rs1178505380 1030 dbSNP
rs970795757 1034 dbSNP
rs1404678455 1041 dbSNP
rs1488850718 1044 dbSNP
rs1267257879 1045 dbSNP
rs748776229 1046 dbSNP
rs1219672154 1049 dbSNP
rs1025175998 1052 dbSNP
rs1286968920 1058 dbSNP
rs991663265 1068 dbSNP
rs959133652 1071 dbSNP
rs1319247401 1073 dbSNP
rs910093527 1074 dbSNP
rs3183518 1075 dbSNP
rs1355561819 1079 dbSNP
rs182030020 1088 dbSNP
rs532814038 1091 dbSNP
rs1210832816 1098 dbSNP
rs1000585655 1107 dbSNP
rs902263281 1110 dbSNP
rs1484990534 1111 dbSNP
rs1185732771 1112 dbSNP
rs34974603 1113 dbSNP
rs755875549 1123 dbSNP
rs1025253759 1125 dbSNP
rs1478784241 1128 dbSNP
rs190789984 1134 dbSNP
rs1367725555 1136 dbSNP
rs375731025 1137 dbSNP
rs1008300769 1142 dbSNP
rs1006691723 1143 dbSNP
rs905471538 1154 dbSNP
rs1341488849 1155 dbSNP
rs1158862284 1161 dbSNP
rs540787466 1173 dbSNP
rs750209228 1179 dbSNP
rs893634325 1183 dbSNP
rs1158605858 1195 dbSNP
rs1032236715 1201 dbSNP
rs1270064753 1205 dbSNP
rs1189583154 1217 dbSNP
rs1488193494 1220 dbSNP
rs1264237453 1225 dbSNP
rs1286554328 1230 dbSNP
rs1049655821 1238 dbSNP
rs1489140241 1242 dbSNP
rs573475061 1250 dbSNP
rs1268104851 1258 dbSNP
rs555248973 1260 dbSNP
rs902455119 1264 dbSNP
rs1192450528 1270 dbSNP
rs1041737100 1276 dbSNP
rs543097892 1283 dbSNP
rs1238039902 1285 dbSNP
rs1361642652 1291 dbSNP
rs942090081 1297 dbSNP
rs1301631460 1298 dbSNP
rs1349828139 1299 dbSNP
rs1437775730 1302 dbSNP
rs907951641 1310 dbSNP
rs572964153 1311 dbSNP
rs757251504 1328 dbSNP
rs575682420 1329 dbSNP
rs917932604 1334 dbSNP
rs751459551 1335 dbSNP
rs991001698 1337 dbSNP
rs930212873 1343 dbSNP
rs1298436401 1344 dbSNP
rs763946093 1347 dbSNP
rs959621919 1354 dbSNP
rs185055482 1355 dbSNP
rs1162113752 1357 dbSNP
rs1413486121 1367 dbSNP
rs538674633 1375 dbSNP
rs1406528039 1382 dbSNP
rs980005354 1389 dbSNP
rs577475970 1390 dbSNP
rs1353207360 1393 dbSNP
rs1446138911 1397 dbSNP
rs1021110203 1401 dbSNP
rs1008001374 1408 dbSNP
rs1332080280 1413 dbSNP
rs1379947167 1418 dbSNP
rs1450696925 1422 dbSNP
rs955001578 1426 dbSNP
rs1174555289 1429 dbSNP
rs1480156599 1430 dbSNP
rs1356785676 1434 dbSNP
rs1017985225 1441 dbSNP
rs1196151604 1450 dbSNP
rs1306804893 1463 dbSNP
rs985633132 1464 dbSNP
rs957867959 1469 dbSNP
rs552852770 1471 dbSNP
rs1028007099 1474 dbSNP
rs534647094 1475 dbSNP
rs1262708977 1478 dbSNP
rs999398611 1484 dbSNP
rs1473337702 1488 dbSNP
rs1204404676 1491 dbSNP
rs902422540 1500 dbSNP
rs116420592 1501 dbSNP
rs1014214277 1511 dbSNP
rs1207852015 1515 dbSNP
rs1322254745 1517 dbSNP
rs1038330144 1518 dbSNP
rs548943203 1519 dbSNP
rs1402514934 1522 dbSNP
rs1458562964 1523 dbSNP
rs1333744167 1525 dbSNP
rs537130007 1527 dbSNP
rs1278223703 1530 dbSNP
rs1449988222 1534 dbSNP
rs756970476 1535 dbSNP
rs79296443 1536 dbSNP
rs1219129028 1542 dbSNP
rs140102697 1543 dbSNP
rs888564566 1544 dbSNP
rs1397032464 1548 dbSNP
rs949506739 1560 dbSNP
rs1278895723 1591 dbSNP
rs766566435 1593 dbSNP
rs10762360 1604 dbSNP
rs1469699287 1606 dbSNP
rs1401635964 1616 dbSNP
rs565530188 1619 dbSNP
rs1477804453 1627 dbSNP
rs938051913 1630 dbSNP
rs1172962370 1634 dbSNP
rs925529156 1637 dbSNP
rs1468315238 1641 dbSNP
rs550909907 1643 dbSNP
rs773552673 1644 dbSNP
rs1476880824 1652 dbSNP
rs145985600 1659 dbSNP
rs1188438289 1663 dbSNP
rs986926650 1667 dbSNP
rs368267718 1671 dbSNP
rs1274873042 1672 dbSNP
rs1346745724 1673 dbSNP
rs528834860 1679 dbSNP
rs918806780 1680 dbSNP
rs1257961993 1687 dbSNP
rs1181700892 1689 dbSNP
rs561451267 1690 dbSNP
rs34824394 1696 dbSNP
rs1027954721 1699 dbSNP
rs1460851345 1701 dbSNP
rs1265984592 1702 dbSNP
rs866139942 1705 dbSNP
rs527464698 1723 dbSNP
rs962406023 1752 dbSNP
rs1017253560 1755 dbSNP
rs910892611 1758 dbSNP
rs1157031292 1769 dbSNP
rs1360068883 1773 dbSNP
rs1420086240 1783 dbSNP
rs1004149438 1784 dbSNP
rs1200052509 1788 dbSNP
rs1363662918 1797 dbSNP
rs1386122257 1801 dbSNP
rs777593230 1804 dbSNP
rs1315513777 1805 dbSNP
rs1332317224 1806 dbSNP
rs767811427 1807 dbSNP
rs1244976051 1809 dbSNP
rs958024485 1810 dbSNP
rs1311095805 1816 dbSNP
rs1288568271 1823 dbSNP
rs1487812937 1825 dbSNP
rs575664754 1830 dbSNP
rs925057509 1840 dbSNP
rs142572144 1856 dbSNP
rs1179667688 1859 dbSNP
rs977885058 1860 dbSNP
rs774878748 1864 dbSNP
rs545340592 1865 dbSNP
rs1055171202 1874 dbSNP
rs1163761683 1875 dbSNP
rs1392724482 1887 dbSNP
rs1013932061 1892 dbSNP
rs937999533 1894 dbSNP
rs903887492 1899 dbSNP
rs867934265 1900 dbSNP
rs566599025 1907 dbSNP
rs945662124 1917 dbSNP
rs1320274996 1926 dbSNP
rs914023527 1930 dbSNP
rs1366912130 1931 dbSNP
rs777765583 1945 dbSNP
rs986990737 1947 dbSNP
rs1443775034 1956 dbSNP
rs934188016 1957 dbSNP
rs1237617860 1962 dbSNP
rs1458415632 1967 dbSNP
rs994257096 1973 dbSNP
rs897348883 1974 dbSNP
rs1041253757 1979 dbSNP
rs1165140266 1980 dbSNP
rs1370157812 1981 dbSNP
rs1180364683 1982 dbSNP
rs1014229415 1988 dbSNP
rs1169384712 1990 dbSNP
rs1400381519 2002 dbSNP
rs921008775 2003 dbSNP
rs944275340 2004 dbSNP
rs3211061 2016 dbSNP
rs1043867 2019 dbSNP
rs1043875 2028 dbSNP
rs924983950 2031 dbSNP
rs983068540 2032 dbSNP
rs951330791 2036 dbSNP
rs1465576979 2037 dbSNP
rs1284260045 2038 dbSNP
rs1024679775 2040 dbSNP
rs1318683144 2045 dbSNP
rs1200546354 2051 dbSNP
rs1354796399 2056 dbSNP
rs1254492679 2061 dbSNP
rs1483027806 2074 dbSNP
rs1257968595 2076 dbSNP
rs1312103285 2082 dbSNP
rs1445161001 2083 dbSNP
rs1335268617 2089 dbSNP
rs1014033695 2095 dbSNP
rs769569956 2102 dbSNP
rs1324337744 2104 dbSNP
rs1043884 2106 dbSNP
rs992026996 2112 dbSNP
rs1002262726 2119 dbSNP
rs1303833147 2121 dbSNP
rs56365320 2128 dbSNP
rs1423780439 2132 dbSNP
rs1033638068 2139 dbSNP
rs1341608311 2142 dbSNP
rs561136786 2146 dbSNP
rs1160412701 2151 dbSNP
rs180838923 2158 dbSNP
rs1363132140 2159 dbSNP
rs892717004 2163 dbSNP
rs1211075652 2173 dbSNP
rs1257598083 2174 dbSNP
rs1487191758 2179 dbSNP
rs1215536495 2202 dbSNP
rs747924149 2203 dbSNP
rs1199040339 2204 dbSNP
rs539585916 2213 dbSNP
rs565669493 2226 dbSNP
rs934135747 2229 dbSNP
rs1423817414 2233 dbSNP
rs1266349581 2237 dbSNP
rs1177776986 2239 dbSNP
rs994227328 2246 dbSNP
rs897275182 2249 dbSNP
rs1245273601 2258 dbSNP
rs921458144 2260 dbSNP
rs1041592232 2262 dbSNP
rs764611047 2267 dbSNP
rs975128121 2271 dbSNP
rs941095162 2274 dbSNP
rs1219823765 2283 dbSNP
rs1488839923 2305 dbSNP
rs890000919 2307 dbSNP
rs1288540639 2310 dbSNP
rs1239182913 2327 dbSNP
rs547976062 2330 dbSNP
rs547449694 2334 dbSNP
rs1275955755 2336 dbSNP
rs982464440 2339 dbSNP
rs951154417 2340 dbSNP
rs115694411 2342 dbSNP
rs761376508 2343 dbSNP
rs1245683820 2346 dbSNP
rs1329353970 2350 dbSNP
rs188395886 2373 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ugacGU-CGGAACUGGAGGGUc 5'
              || |: |  |||||||| 
Target 5' uccuCAGGUAUCUACCUCCCAc 3'
1 - 22
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000355790.4 | 3UTR | UCCUCAGGUAUCUACCUCCCACCUUCUCCUCAUCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
494 hsa-miR-1273h-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT074355 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT100721 TJAP1 tight junction associated protein 1 2 2
MIRT115545 MAZ MYC associated zinc finger protein 2 2
MIRT124982 XIAP X-linked inhibitor of apoptosis 2 4
MIRT139911 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT177183 ARL5B ADP ribosylation factor like GTPase 5B 2 4
MIRT187994 MBD6 methyl-CpG binding domain protein 6 2 2
MIRT207410 MAT2A methionine adenosyltransferase 2A 2 6
MIRT241928 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT260110 KLHL21 kelch like family member 21 2 2
MIRT260358 XRCC6 X-ray repair cross complementing 6 2 6
MIRT266428 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT294663 ZNF548 zinc finger protein 548 2 2
MIRT351039 PLEKHB2 pleckstrin homology domain containing B2 2 2
MIRT379943 PRRG4 proline rich and Gla domain 4 2 2
MIRT398983 KAT7 lysine acetyltransferase 7 2 2
MIRT441465 BEST3 bestrophin 3 2 2
MIRT446750 ZNF491 zinc finger protein 491 2 2
MIRT449224 RAD51B RAD51 paralog B 2 2
MIRT450623 AQR aquarius intron-binding spliceosomal factor 2 2
MIRT451090 ZNF584 zinc finger protein 584 2 2
MIRT451558 CIAPIN1 cytokine induced apoptosis inhibitor 1 2 2
MIRT451736 CES3 carboxylesterase 3 2 2
MIRT452411 QDPR quinoid dihydropteridine reductase 2 2
MIRT452559 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT452851 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT452922 DISC1 disrupted in schizophrenia 1 2 2
MIRT453043 TANGO2 transport and golgi organization 2 homolog 2 4
MIRT453097 HOXC4 homeobox C4 2 2
MIRT453297 ZNF394 zinc finger protein 394 2 2
MIRT453593 ZNF557 zinc finger protein 557 2 2
MIRT453787 KBTBD12 kelch repeat and BTB domain containing 12 2 2
MIRT453987 CECR1 adenosine deaminase 2 2 2
MIRT454083 TMEM209 transmembrane protein 209 2 2
MIRT454652 FBXL18 F-box and leucine rich repeat protein 18 2 2
MIRT454753 PFKFB3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 2 2
MIRT455311 TTLL9 tubulin tyrosine ligase like 9 2 2
MIRT456468 SERAC1 serine active site containing 1 2 2
MIRT456554 TOMM20 translocase of outer mitochondrial membrane 20 2 2
MIRT456716 TMEM239 transmembrane protein 239 2 4
MIRT456796 SIGLEC14 sialic acid binding Ig like lectin 14 2 2
MIRT457487 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457999 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT458130 TLCD2 TLC domain containing 2 2 2
MIRT459027 ZNF490 zinc finger protein 490 2 4
MIRT459119 FADS6 fatty acid desaturase 6 2 2
MIRT459315 HAVCR2 hepatitis A virus cellular receptor 2 2 2
MIRT459385 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT459412 FAM83B family with sequence similarity 83 member B 2 2
MIRT459974 RFT1 RFT1 homolog 2 2
MIRT460480 FAM105A family with sequence similarity 105 member A 2 6
MIRT460586 FEM1A fem-1 homolog A 2 2
MIRT460920 NOA1 nitric oxide associated 1 2 4
MIRT461072 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT461590 DPH2 DPH2 homolog 2 2
MIRT461854 ZNF317 zinc finger protein 317 2 2
MIRT462176 ACADL acyl-CoA dehydrogenase, long chain 2 2
MIRT462446 GCDH glutaryl-CoA dehydrogenase 2 2
MIRT463854 WNT7B Wnt family member 7B 2 2
MIRT464310 UST uronyl 2-sulfotransferase 2 2
MIRT464815 UBE2B ubiquitin conjugating enzyme E2 B 2 2
MIRT465453 TOR2A torsin family 2 member A 2 2
MIRT466073 TMEM184C transmembrane protein 184C 2 2
MIRT466514 TBXA2R thromboxane A2 receptor 2 2
MIRT467072 SRRD SRR1 domain containing 2 2
MIRT469551 RARA retinoic acid receptor alpha 2 2
MIRT469741 RAB2B RAB2B, member RAS oncogene family 2 2
MIRT470759 PNPLA6 patatin like phospholipase domain containing 6 2 2
MIRT470875 PLXND1 plexin D1 2 2
MIRT470976 PITPNA phosphatidylinositol transfer protein alpha 2 2
MIRT471048 PIM3 Pim-3 proto-oncogene, serine/threonine kinase 2 2
MIRT471215 PHAX phosphorylated adaptor for RNA export 2 2
MIRT471246 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT471286 PGAM4 phosphoglycerate mutase family member 4 2 2
MIRT471467 PDE7B phosphodiesterase 7B 2 2
MIRT473069 MORN4 MORN repeat containing 4 2 4
MIRT473989 LRRC20 leucine rich repeat containing 20 2 2
MIRT474518 KLHDC8A kelch domain containing 8A 2 2
MIRT474990 KANSL1 KAT8 regulatory NSL complex subunit 1 2 2
MIRT475547 HNRNPUL1 heterogeneous nuclear ribonucleoprotein U like 1 2 2
MIRT476350 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT477298 EPHB2 EPH receptor B2 2 2
MIRT477933 DPM2 dolichyl-phosphate mannosyltransferase subunit 2, regulatory 2 2
MIRT478282 DDX19A DEAD-box helicase 19A 2 4
MIRT478472 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT478559 CTNND1 catenin delta 1 2 2
MIRT478618 CTDNEP1 CTD nuclear envelope phosphatase 1 2 2
MIRT478834 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT479007 COL5A1 collagen type V alpha 1 chain 2 2
MIRT479166 CLSPN claspin 2 2
MIRT482454 ADAR adenosine deaminase, RNA specific 2 4
MIRT483019 KHSRP KH-type splicing regulatory protein 2 4
MIRT483798 CYP2W1 cytochrome P450 family 2 subfamily W member 1 2 6
MIRT486087 SLC7A5 solute carrier family 7 member 5 2 4
MIRT486304 SIPA1 signal-induced proliferation-associated 1 2 2
MIRT486490 MYH11 myosin heavy chain 11 2 2
MIRT486881 TSPYL4 TSPY like 4 2 2
MIRT487125 NCOR2 nuclear receptor corepressor 2 2 2
MIRT487542 TM6SF2 transmembrane 6 superfamily member 2 2 4
MIRT487676 B3GALT5 beta-1,3-galactosyltransferase 5 2 4
MIRT489251 TTLL1 tubulin tyrosine ligase like 1 2 4
MIRT489276 RBM8A RNA binding motif protein 8A 2 8
MIRT489496 CRLF3 cytokine receptor like factor 3 2 4
MIRT489571 SSBP2 single stranded DNA binding protein 2 2 2
MIRT489694 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT490166 TMEM63C transmembrane protein 63C 2 2
MIRT491199 MLLT1 MLLT1, super elongation complex subunit 2 4
MIRT491260 DHX40 DEAH-box helicase 40 2 2
MIRT491385 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT491548 YAE1D1 Yae1 domain containing 1 2 2
MIRT492722 PHF12 PHD finger protein 12 2 2
MIRT493866 FAM73B mitoguardin 2 2 4
MIRT494549 BAK1 BCL2 antagonist/killer 1 2 2
MIRT498586 KRT8 keratin 8 2 2
MIRT498722 SNTN sentan, cilia apical structure protein 2 6
MIRT499982 HIST1H2BD histone cluster 1 H2B family member d 2 4
MIRT503414 SLC25A45 solute carrier family 25 member 45 2 6
MIRT508491 FTO FTO, alpha-ketoglutarate dependent dioxygenase 2 2
MIRT508877 METTL14 methyltransferase like 14 2 2
MIRT509622 RRP7A ribosomal RNA processing 7 homolog A 2 4
MIRT510104 IRAK3 interleukin 1 receptor associated kinase 3 2 8
MIRT510139 PDGFRA platelet derived growth factor receptor alpha 2 4
MIRT510353 ZNF703 zinc finger protein 703 2 6
MIRT510620 TMEM167A transmembrane protein 167A 2 4
MIRT510786 SF3B3 splicing factor 3b subunit 3 2 6
MIRT511021 NRF1 nuclear respiratory factor 1 2 2
MIRT513925 GHITM growth hormone inducible transmembrane protein 2 2
MIRT514342 DNAH17 dynein axonemal heavy chain 17 2 4
MIRT515015 SUMF2 sulfatase modifying factor 2 2 2
MIRT515246 DUSP28 dual specificity phosphatase 28 2 2
MIRT516202 RPP30 ribonuclease P/MRP subunit p30 2 2
MIRT516435 ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 motif 4 2 4
MIRT516666 ZNF860 zinc finger protein 860 2 4
MIRT518373 ZNF250 zinc finger protein 250 2 2
MIRT518930 LSG1 large 60S subunit nuclear export GTPase 1 2 2
MIRT519676 ZNF70 zinc finger protein 70 2 2
MIRT519902 ZFAND4 zinc finger AN1-type containing 4 2 4
MIRT519945 ZCCHC8 zinc finger CCHC-type containing 8 2 2
MIRT520321 UBXN2A UBX domain protein 2A 2 2
MIRT520606 TMEM41B transmembrane protein 41B 2 2
MIRT520663 TMEM11 transmembrane protein 11 2 2
MIRT520852 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT521443 RAD51 RAD51 recombinase 2 2
MIRT521671 PRKAR2A protein kinase cAMP-dependent type II regulatory subunit alpha 2 2
MIRT522281 NKAP NFKB activating protein 2 2
MIRT522333 NCKIPSD NCK interacting protein with SH3 domain 2 8
MIRT522535 MED28 mediator complex subunit 28 2 6
MIRT523478 GNG4 G protein subunit gamma 4 2 2
MIRT523672 FOPNL FGFR1OP N-terminal like 2 2
MIRT523715 FBXW2 F-box and WD repeat domain containing 2 2 4
MIRT523867 ESCO2 establishment of sister chromatid cohesion N-acetyltransferase 2 2 4
MIRT524043 DNAJC8 DnaJ heat shock protein family (Hsp40) member C8 2 2
MIRT524167 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT524928 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT526825 PHC1 polyhomeotic homolog 1 2 2
MIRT531017 TDGF1P3 teratocarcinoma-derived growth factor 1 pseudogene 3 2 2
MIRT536085 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT540681 BMP3 bone morphogenetic protein 3 2 2
MIRT541708 TMEM33 transmembrane protein 33 2 2
MIRT541755 KLF8 Kruppel like factor 8 2 2
MIRT541888 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT545714 SPTLC2 serine palmitoyltransferase long chain base subunit 2 2 2
MIRT559054 C19orf47 chromosome 19 open reading frame 47 2 4
MIRT561748 PLAGL2 PLAG1 like zinc finger 2 2 2
MIRT562365 ETV3 ETS variant 3 2 2
MIRT562821 GCFC2 GC-rich sequence DNA-binding factor 2 2 2
MIRT562900 DNAH10OS dynein axonemal heavy chain 10 opposite strand 2 2
MIRT564452 SLC35E2 solute carrier family 35 member E2 2 5
MIRT569111 ONECUT3 one cut homeobox 3 2 2
MIRT569224 SUSD1 sushi domain containing 1 2 2
MIRT570271 ARPC3 actin related protein 2/3 complex subunit 3 2 2
MIRT570498 TFIP11 tuftelin interacting protein 11 2 2
MIRT570844 GPRC5C G protein-coupled receptor class C group 5 member C 2 2
MIRT571311 TPCN2 two pore segment channel 2 2 2
MIRT572077 EXOC8 exocyst complex component 8 2 2
MIRT572116 DNAJC24 DnaJ heat shock protein family (Hsp40) member C24 2 2
MIRT573054 TRIB1 tribbles pseudokinase 1 2 2
MIRT573483 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT573656 HES6 hes family bHLH transcription factor 6 2 2
MIRT574343 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT576494 Slc35e2 solute carrier family 35, member E2 2 4
MIRT608033 UBLCP1 ubiquitin like domain containing CTD phosphatase 1 2 2
MIRT611326 NANOS1 nanos C2HC-type zinc finger 1 2 2
MIRT613660 KIAA1210 KIAA1210 2 2
MIRT615638 ATF6 activating transcription factor 6 2 2
MIRT618573 RRAD RRAD, Ras related glycolysis inhibitor and calcium channel regulator 2 2
MIRT618865 MBL2 mannose binding lectin 2 2 2
MIRT618962 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT619172 SLC16A4 solute carrier family 16 member 4 2 2
MIRT620298 AQP6 aquaporin 6 2 2
MIRT620683 RFTN2 raftlin family member 2 2 2
MIRT621637 UBXN2B UBX domain protein 2B 2 2
MIRT621993 STK4 serine/threonine kinase 4 2 2
MIRT622421 NUDT19 nudix hydrolase 19 2 2
MIRT622804 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 4
MIRT624786 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 2
MIRT624968 ZNF665 zinc finger protein 665 2 4
MIRT625479 SMAD9 SMAD family member 9 2 2
MIRT626594 ACAA2 acetyl-CoA acyltransferase 2 2 4
MIRT626708 TRIM65 tripartite motif containing 65 2 2
MIRT626975 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT627489 STRIP2 striatin interacting protein 2 2 2
MIRT628505 ZNF878 zinc finger protein 878 2 2
MIRT628533 ZNF701 zinc finger protein 701 2 2
MIRT628591 TMEM251 transmembrane protein 251 2 2
MIRT628818 SLC25A34 solute carrier family 25 member 34 2 2
MIRT628896 IGSF6 immunoglobulin superfamily member 6 2 2
MIRT628958 UBE2D4 ubiquitin conjugating enzyme E2 D4 (putative) 2 2
MIRT629005 OSBPL10 oxysterol binding protein like 10 2 2
MIRT629059 KIF1C kinesin family member 1C 2 2
MIRT629192 PAPOLA poly(A) polymerase alpha 2 2
MIRT629346 TMPRSS11BNL TMPRSS11B N-terminal like, pseudogene 2 2
MIRT629447 WIZ widely interspaced zinc finger motifs 2 2
MIRT629696 XKR4 XK related 4 2 2
MIRT629737 SCD5 stearoyl-CoA desaturase 5 2 2
MIRT629896 SPATA5 spermatogenesis associated 5 2 2
MIRT629953 GLP2R glucagon like peptide 2 receptor 2 2
MIRT630023 MTL5 testis expressed metallothionein like protein 2 2
MIRT630181 TLN1 talin 1 2 2
MIRT630325 PAQR5 progestin and adipoQ receptor family member 5 2 2
MIRT630389 MYH9 myosin heavy chain 9 2 4
MIRT630695 EXTL3 exostosin like glycosyltransferase 3 2 2
MIRT631054 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT631130 SYNJ2 synaptojanin 2 2 2
MIRT631374 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT631557 TRAF3IP2 TRAF3 interacting protein 2 2 2
MIRT631615 PCDHB11 protocadherin beta 11 2 2
MIRT631935 CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 2 4
MIRT632109 SSR1 signal sequence receptor subunit 1 2 2
MIRT632168 CCL22 C-C motif chemokine ligand 22 2 2
MIRT632445 SGTB small glutamine rich tetratricopeptide repeat containing beta 2 2
MIRT632652 NAV1 neuron navigator 1 2 2
MIRT632688 MTMR10 myotubularin related protein 10 2 2
MIRT632828 IGF1 insulin like growth factor 1 2 2
MIRT632905 FRRS1 ferric chelate reductase 1 2 2
MIRT633027 DNAL1 dynein axonemal light chain 1 2 2
MIRT633379 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT633440 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT633726 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 2 2
MIRT633832 WHAMM WAS protein homolog associated with actin, golgi membranes and microtubules 2 2
MIRT633862 ATP6V1A ATPase H+ transporting V1 subunit A 2 2
MIRT634042 NUP155 nucleoporin 155 2 2
MIRT634266 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT634374 RAP2B RAP2B, member of RAS oncogene family 2 2
MIRT634439 PDE7A phosphodiesterase 7A 2 2
MIRT634573 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT634620 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT634693 DSEL dermatan sulfate epimerase-like 2 2
MIRT634768 CD3D CD3d molecule 2 2
MIRT635024 WWTR1 WW domain containing transcription regulator 1 2 2
MIRT635384 NHLRC2 NHL repeat containing 2 2 2
MIRT635577 TTC9C tetratricopeptide repeat domain 9C 2 2
MIRT635793 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT635837 ZNF264 zinc finger protein 264 2 2
MIRT636043 ZSCAN29 zinc finger and SCAN domain containing 29 2 4
MIRT636070 ZNF280C zinc finger protein 280C 2 2
MIRT636697 ARSK arylsulfatase family member K 2 2
MIRT637438 ZNF324B zinc finger protein 324B 2 2
MIRT637582 PLD6 phospholipase D family member 6 2 2
MIRT637672 PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D 2 2
MIRT637887 SLC19A3 solute carrier family 19 member 3 2 4
MIRT638353 RBMS2 RNA binding motif single stranded interacting protein 2 2 4
MIRT638597 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT638821 CRTAP cartilage associated protein 2 2
MIRT638871 CEP97 centrosomal protein 97 2 4
MIRT639660 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT640200 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT641592 TNS4 tensin 4 2 2
MIRT644993 POLR2J3 RNA polymerase II subunit J3 2 2
MIRT645059 UQCRQ ubiquinol-cytochrome c reductase complex III subunit VII 2 2
MIRT646948 UPK3BL uroplakin 3B like 1 2 2
MIRT647306 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT648300 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT649043 SLC1A2 solute carrier family 1 member 2 2 2
MIRT649884 SLFN12L schlafen family member 12 like 2 2
MIRT650196 DOCK7 dedicator of cytokinesis 7 2 2
MIRT654789 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655667 NUP43 nucleoporin 43 2 2
MIRT655925 NDUFA4P1 NDUFA4, mitochondrial complex associated pseudogene 1 2 2
MIRT656433 MARCH6 membrane associated ring-CH-type finger 6 2 2
MIRT657713 GPC4 glypican 4 2 2
MIRT659302 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT659844 CAPZB capping actin protein of muscle Z-line beta subunit 2 2
MIRT660660 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT661308 CPM carboxypeptidase M 2 2
MIRT661473 CHMP1B charged multivesicular body protein 1B 2 2
MIRT661906 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT662064 ZNF284 zinc finger protein 284 2 2
MIRT662491 ANGPT4 angiopoietin 4 2 2
MIRT662657 LRRC47 leucine rich repeat containing 47 2 2
MIRT662804 MSRB2 methionine sulfoxide reductase B2 2 2
MIRT663164 FGFR1OP FGFR1 oncogene partner 2 2
MIRT663376 ZNF770 zinc finger protein 770 2 4
MIRT663418 ZNF607 zinc finger protein 607 2 2
MIRT663990 WDR75 WD repeat domain 75 2 2
MIRT664157 APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F 2 4
MIRT664489 POLR3K RNA polymerase III subunit K 2 2
MIRT665058 CCDC77 coiled-coil domain containing 77 2 2
MIRT665080 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT665420 WDR55 WD repeat domain 55 2 2
MIRT665716 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT665923 TBC1D19 TBC1 domain family member 19 2 4
MIRT666239 SLC38A7 solute carrier family 38 member 7 2 4
MIRT666840 PPTC7 PTC7 protein phosphatase homolog 2 2
MIRT667378 MOB1B MOB kinase activator 1B 2 2
MIRT667573 LONRF2 LON peptidase N-terminal domain and ring finger 2 2 2
MIRT667894 ING1 inhibitor of growth family member 1 2 2
MIRT667977 HECTD3 HECT domain E3 ubiquitin protein ligase 3 2 2
MIRT668197 GCNT4 glucosaminyl (N-acetyl) transferase 4, core 2 2 2
MIRT668279 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT668386 FAT3 FAT atypical cadherin 3 2 2
MIRT668444 FAM208A family with sequence similarity 208 member A 2 2
MIRT668998 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT669180 CCNF cyclin F 2 2
MIRT669444 ATL3 atlastin GTPase 3 2 2
MIRT669661 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT669890 KIAA0754 KIAA0754 2 4
MIRT669973 SSR3 signal sequence receptor subunit 3 2 2
MIRT670153 SLC29A4 solute carrier family 29 member 4 2 2
MIRT670240 TRIM13 tripartite motif containing 13 2 2
MIRT670274 CBY3 chibby family member 3 2 2
MIRT670358 ULBP3 UL16 binding protein 3 2 4
MIRT670627 BVES blood vessel epicardial substance 2 2
MIRT670731 HOOK3 hook microtubule tethering protein 3 2 2
MIRT670770 TRIM66 tripartite motif containing 66 2 2
MIRT670913 DESI1 desumoylating isopeptidase 1 2 2
MIRT671216 CLSTN1 calsyntenin 1 2 2
MIRT671398 ERCC6L2 ERCC excision repair 6 like 2 2 2
MIRT671427 TOX4 TOX high mobility group box family member 4 2 2
MIRT671654 TRUB2 TruB pseudouridine synthase family member 2 2 4
MIRT671702 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT672136 PLEKHH1 pleckstrin homology, MyTH4 and FERM domain containing H1 2 2
MIRT672395 SLC10A6 solute carrier family 10 member 6 2 2
MIRT672508 GGCX gamma-glutamyl carboxylase 2 2
MIRT672572 RNF24 ring finger protein 24 2 2
MIRT672789 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT673019 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT673190 C10orf76 chromosome 10 open reading frame 76 2 2
MIRT673372 ZNF124 zinc finger protein 124 2 2
MIRT673495 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 6
MIRT673852 CAPN7 calpain 7 2 2
MIRT673929 ZNF500 zinc finger protein 500 2 2
MIRT673986 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT674076 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT674123 RPL7L1 ribosomal protein L7 like 1 2 2
MIRT674297 THAP5 THAP domain containing 5 2 2
MIRT674370 POLR3D RNA polymerase III subunit D 2 2
MIRT674641 NKRF NFKB repressing factor 2 2
MIRT674665 PLCE1 phospholipase C epsilon 1 2 2
MIRT674725 ZNF451 zinc finger protein 451 2 4
MIRT674779 NPR1 natriuretic peptide receptor 1 2 2
MIRT674889 RASSF9 Ras association domain family member 9 2 2
MIRT675017 SNX1 sorting nexin 1 2 2
MIRT675341 KLHL26 kelch like family member 26 2 2
MIRT675416 CLEC7A C-type lectin domain containing 7A 2 2
MIRT675497 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT675615 EHD2 EH domain containing 2 2 2
MIRT675735 AHR aryl hydrocarbon receptor 2 2
MIRT675857 ATP1B4 ATPase Na+/K+ transporting family member beta 4 2 2
MIRT675990 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676213 TMEM91 transmembrane protein 91 2 2
MIRT676406 MRO maestro 2 2
MIRT677299 CPSF2 cleavage and polyadenylation specific factor 2 2 2
MIRT677387 PCNP PEST proteolytic signal containing nuclear protein 2 2
MIRT677859 ABI2 abl interactor 2 2 2
MIRT677965 ITGB3 integrin subunit beta 3 2 2
MIRT678175 CRCP CGRP receptor component 2 2
MIRT678273 PTRH2 peptidyl-tRNA hydrolase 2 2 2
MIRT678665 SCUBE3 signal peptide, CUB domain and EGF like domain containing 3 2 2
MIRT679003 TTC39B tetratricopeptide repeat domain 39B 2 2
MIRT679053 RMDN1 regulator of microtubule dynamics 1 2 2
MIRT679461 RHOF ras homolog family member F, filopodia associated 2 2
MIRT679513 RAB36 RAB36, member RAS oncogene family 2 2
MIRT679914 ZKSCAN3 zinc finger with KRAB and SCAN domains 3 2 2
MIRT680029 OSBPL2 oxysterol binding protein like 2 2 4
MIRT680245 NDUFA7 NADH:ubiquinone oxidoreductase subunit A7 2 2
MIRT680279 AKIP1 A-kinase interacting protein 1 2 2
MIRT680499 PRIM2 DNA primase subunit 2 2 2
MIRT680586 ZNF573 zinc finger protein 573 2 2
MIRT680629 KIAA1456 KIAA1456 2 2
MIRT680819 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT680998 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 2 2
MIRT681122 INTS7 integrator complex subunit 7 2 2
MIRT681161 IBA57 IBA57 homolog, iron-sulfur cluster assembly 2 2
MIRT681221 DUSP19 dual specificity phosphatase 19 2 2
MIRT681304 IKZF3 IKAROS family zinc finger 3 2 2
MIRT681341 BRI3BP BRI3 binding protein 2 2
MIRT681608 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT681779 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT681892 SLC11A2 solute carrier family 11 member 2 2 2
MIRT682084 ITGA3 integrin subunit alpha 3 2 4
MIRT682139 SMS spermine synthase 2 2
MIRT682217 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT682367 PHACTR4 phosphatase and actin regulator 4 2 2
MIRT682535 EXOSC2 exosome component 2 2 2
MIRT682618 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT683643 ZNF695 zinc finger protein 695 2 2
MIRT684008 FOLR1 folate receptor 1 2 2
MIRT684442 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT684855 ZNF749 zinc finger protein 749 2 2
MIRT684956 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT685044 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685095 DTD2 D-tyrosyl-tRNA deacylase 2 (putative) 2 2
MIRT685382 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT685456 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT685810 SLC27A1 solute carrier family 27 member 1 2 2
MIRT685913 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT686665 TMEM120B transmembrane protein 120B 2 2
MIRT686955 SFT2D2 SFT2 domain containing 2 2 2
MIRT687118 QPCTL glutaminyl-peptide cyclotransferase like 2 2
MIRT687739 KIAA1328 KIAA1328 2 2
MIRT688063 GLUL glutamate-ammonia ligase 2 2
MIRT688191 FNIP1 folliculin interacting protein 1 2 2
MIRT688769 CDH7 cadherin 7 2 2
MIRT688979 ATP6AP1 ATPase H+ transporting accessory protein 1 2 2
MIRT689572 NUDT7 nudix hydrolase 7 2 2
MIRT689683 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT689930 MANSC1 MANSC domain containing 1 2 2
MIRT690089 PNMA2 paraneoplastic Ma antigen 2 2 2
MIRT690190 C5orf45 MRN complex interacting protein 2 2
MIRT690246 CAMLG calcium modulating ligand 2 2
MIRT690411 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT690840 DSN1 DSN1 homolog, MIS12 kinetochore complex component 2 2
MIRT690889 FUT2 fucosyltransferase 2 2 2
MIRT691107 ADIPOQ adiponectin, C1Q and collagen domain containing 2 2
MIRT691229 DFNB59 pejvakin 2 2
MIRT691300 ZNF681 zinc finger protein 681 2 2
MIRT691366 GP5 glycoprotein V platelet 2 2
MIRT691797 WARS tryptophanyl-tRNA synthetase 2 2
MIRT692142 CEP104 centrosomal protein 104 2 2
MIRT692572 NCMAP non-compact myelin associated protein 2 2
MIRT692649 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT692744 NDUFS5 NADH:ubiquinone oxidoreductase subunit S5 2 2
MIRT693092 SCNM1 sodium channel modifier 1 2 2
MIRT693296 SYTL3 synaptotagmin like 3 2 2
MIRT693392 ZNF460 zinc finger protein 460 2 2
MIRT693530 ZNF708 zinc finger protein 708 2 2
MIRT693562 PIGR polymeric immunoglobulin receptor 2 2
MIRT694492 AGBL5 ATP/GTP binding protein like 5 2 2
MIRT694722 LLGL1 LLGL1, scribble cell polarity complex component 2 2
MIRT694866 ZNF417 zinc finger protein 417 2 2
MIRT695070 ZNF17 zinc finger protein 17 2 2
MIRT695451 COX18 COX18, cytochrome c oxidase assembly factor 2 2
MIRT695724 ZNF117 zinc finger protein 117 2 2
MIRT695898 MED16 mediator complex subunit 16 2 2
MIRT696244 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT696259 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT696512 C3 complement C3 2 2
MIRT696560 TTC21B tetratricopeptide repeat domain 21B 2 2
MIRT696643 AGXT2 alanine--glyoxylate aminotransferase 2 2 2
MIRT696791 DHODH dihydroorotate dehydrogenase (quinone) 2 2
MIRT696819 PLLP plasmolipin 2 2
MIRT697088 GPKOW G-patch domain and KOW motifs 2 2
MIRT697153 INMT indolethylamine N-methyltransferase 2 2
MIRT697202 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697322 ZNF641 zinc finger protein 641 2 2
MIRT697578 YME1L1 YME1 like 1 ATPase 2 2
MIRT697619 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT698619 TES testin LIM domain protein 2 2
MIRT698804 STK38 serine/threonine kinase 38 2 2
MIRT698949 SPAST spastin 2 2
MIRT699083 SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 2 2
MIRT699430 SLC1A5 solute carrier family 1 member 5 2 2
MIRT699550 SIT1 signaling threshold regulating transmembrane adaptor 1 2 2
MIRT700324 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT700360 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT700462 PURB purine rich element binding protein B 2 2
MIRT701677 MYADM myeloid associated differentiation marker 2 2
MIRT701757 MSL2 MSL complex subunit 2 2 2
MIRT701977 MIER3 MIER family member 3 2 2
MIRT703178 GPBP1 GC-rich promoter binding protein 1 2 2
MIRT703203 GOLGA3 golgin A3 2 2
MIRT703359 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT703425 FYTTD1 forty-two-three domain containing 1 2 2
MIRT703484 FNDC3B fibronectin type III domain containing 3B 2 2
MIRT703590 FBXO45 F-box protein 45 2 2
MIRT703806 EVI5 ecotropic viral integration site 5 2 2
MIRT703915 EPG5 ectopic P-granules autophagy protein 5 homolog 2 2
MIRT704234 DHDDS dehydrodolichyl diphosphate synthase subunit 2 2
MIRT704646 CLCC1 chloride channel CLIC like 1 2 2
MIRT705151 C11orf58 chromosome 11 open reading frame 58 2 2
MIRT705480 ASXL2 additional sex combs like 2, transcriptional regulator 2 2
MIRT705530 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT705661 ANKRD40 ankyrin repeat domain 40 2 2
MIRT706144 ZNF674 zinc finger protein 674 2 2
MIRT706473 SNX27 sorting nexin family member 27 2 2
MIRT708254 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT708838 SCAND3 zinc finger BED-type containing 9 1 1
MIRT710437 BTNL3 butyrophilin like 3 2 2
MIRT711325 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT716151 RBM48 RNA binding motif protein 48 2 2
MIRT717402 ZCCHC24 zinc finger CCHC-type containing 24 2 2
MIRT720866 ADCY5 adenylate cyclase 5 2 2
MIRT722226 ZNF503 zinc finger protein 503 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-1273h-5p Paclitaxel 36314 NSC125973 approved sensitive High Ovarian Cancer cell line (SKOV3)
hsa-miR-1273h-5p Tripterygium wilfordii Hook F resistant tissue
hsa-miR-1273h-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (MGC-803)

Error report submission