miRTarBase - #MIRT474452


—
pre-miRNA Information
pre-miRNA hsa-mir-520g   
Genomic Coordinates chr19: 53722166 - 53722255
Description Homo sapiens miR-520g stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-520g-3p
Sequence 55| ACAAAGUGCUUCCCUUUAGAGUGU |78
Evidence Experimental
Experiments Array-cloned
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1323826229 2 dbSNP
rs755388007 3 dbSNP
rs1164244906 6 dbSNP
rs1246278474 7 dbSNP
rs765799681 8 dbSNP
rs753182219 9 dbSNP
rs572746807 17 dbSNP
rs1384883413 18 dbSNP
rs1439199232 20 dbSNP
rs780750635 21 dbSNP
rs745461502 22 dbSNP
rs370035590 23 dbSNP
rs1017282550 24 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol KLHL11   
Synonyms -
Description kelch like family member 11
Transcript NM_018143   
Expression
Putative miRNA Targets on KLHL11
3'UTR of KLHL11
(miRNA target sites are highlighted)		 
>KLHL11|NM_018143|3'UTR
   1 GTTCTCTCAAGCGTGCCGATTAAAACTGTTACACCCGTTTCGTGAAGCTGAAGATACCCAGGCTGTTATTTAAAAAAGTA
  81 TGTCGATAACTTATTTTCTACATGAACTGATTATTACCCCATATAAAGGAAATAGAGTTAAAAACTAAAGAATGGGAGAC
 161 TCAGTTCAATACATGGTCATTTTGTTAGCTTGCAATTTTTGTCTTTGGTTTGTTTGTTTGTGCTAGCTAAATAAGATCTT
 241 ATTAAGGACAAGTGGAAAAATCAGGTGTAGTTGCTTAGCTGTTTTCCTGCCAACGAGTTATGACTCCTTTGTCTTGAGGA
 321 CTTACGTTTTGAACATGCTTTAAGCACCAATTTTATTTGCACATTTACTTTGATATTCTTTTTCATTTTTTATTAAATGA
 401 TTGGTTTTGGCAAGATCTGACTTCTGCATTGAGCCCTCATCTGCAGGAGGCATGTGCAATAGTGAGACTGAAATTTGAAT
 481 GAAAACACTCAATATTTCAGCAAGATAATTTGAGAATGTTTGCATTGATATTTTCTTATGTTTATCTAGAAATGCCAGTT
 561 TCCTTCCTAGAAGATGTGACTGATGAGAAATTTTTTACTGGCTCATGCATTTTTTGAATATTTTTCATTAGCAGCTGTTT
 641 ATAGACTTTAAGCCTTCAATCTGAGGTGACGGTAGTTGGCAAAAGTATAGATCTTTAGCTAATTGACTAAATACAGAGCA
 721 AGTTACATGTGTGAACTTTGTTTCTCTAAGAAGAAAAGTATTAGTGTAGACTGGGAAATCAAAGGCATTTAAAATTTTTT
 801 CAACATTTTTTTCAGGAGTTGCAGGATTATTTGAGGATATGTTAATGAGTGTAAATAATGCCTATGACAATCGACACTCA
 881 ATGCCTTCCATTTTAATTTTTGCTCTAATGCATATTATATAGAATCTTCATTATTCCTTTTCTCTTTTTTTTTTTTTTTT
 961 TGCTCATGTTGCCCAGGCTGGAGTGCAGTGGTGCAATCTCGGCTCACTGCAACCTCTGCCTGCCAGGTTCGAGTGATTCT
1041 CTTGCCTCAGCATCCCGAGTAGCTGGGATTACAGGTACCCACCATCACGCCTGGCTAATTTTTGTGCTTTTAGTAGAGAC
1121 AGGGTTTCACCATGTTGACCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATACGCCCGCCTCAGCCTCCCAAAGTGCTG
1201 GGATTACAGGCATGAGCCACCGTGCCCAGTCCATTATTCTTTTCTACAAGAAACTGTTTTTTTCCAAAATGGGAAGGAAG
1281 TCACAATTTAGAGAAATGTTGCTAAAGAGAAGCCTTATTATTTCTGATTGTTATATTTTATCCAGTTGCCCCACACTTTC
1361 AAACTTTGCCTGAGCCTAGGATACCAAATTTGGGTACATAATTTTGGCTTTTAAAGGTTTATGGGCTGGGCACGGTGGCT
1441 CATGACTGTAATCCCAACACTTTGGAGGAGGCTGAGGTGGGCAGATTTTGAGCCCAAGAGTTCAAGACCAGCCTGGGAAA
1521 CATAGCAAGATCCTGTCTCTACAAAAAGTAGAAAAATTAGCTGAGTGTGGTAGCTGGCACGTGCCTGTAGTCCTTCCTAC
1601 TTGAAGCCAAGGTGGGAGGATCACCAGAGCCTGGGAAGGTTGAGGCTGAAATGAGCTGTGATCATGCCACTCTACCTTGG
1681 GTGACAGAGAGACGGTGTCTCAAATAAAAATTAAAAAGATCACTGAAGCTATCTTTTATTTAGTTTTATACGTTATTCGA
1761 ATTATCTTATGTCTCCTGAGCTTTATAAAAGTTAGCACTCAAATTGACTTTTTTTTTTTTTTGGGCCAGGGGATGGGGTC
1841 CCACTTTGTCACCCAGGTTGGAGTACAGTGGTATGATCTCGGCTCACTACAACCTCCACCTCCTGGATGCAAGCCATCCT
1921 GCCACCTCAGCATACGGAGTAGCTGGGACTATGGGCACGCGCCACCACGCCCAGCTAATTTTTTTTTTGTATTTTTGGTA
2001 GAGATGGGGTTTCTCCATGTTGCCGAGGCTGGTCTCCAACTCCTGGGCTCAGGAGATCCACCCGTATCAGCCTCCCAGGG
2081 TGCTAGGATTAGGTGTGAGCCACCACGCCCGGCCTCAAAATAACTTTTTTTTTTTTTTTTGAAACAGTCACGCTTTGTCG
2161 CCCTGGCTGGAGTGCAGTTGCGCAGTCTCAGCTCACTGCAACCTCCACCTCCCGGGTTCATGTGATTCTCCTGCCTCAGC
2241 CTGCTGAGTAGCTGGGATTGCAGGTGTGTACCACCACGCCCGGCTAATTTTTGTATTTTTAATAGAGATGGGGTTTCACC
2321 ATGTTGGTTAGGCTGGTCTCGAACTCCTGACCTCGTGATCCGCCCACCTCAGCCTCTCAAAGCGCTGGGATTACAGGCAT
2401 GAGCCACCATGCCCAGCCCTCAAATTTACTCTTAATGCTCAGTTAATATAAAGGATTCCTAACAGTTTACAATGTGGTTT
2481 TCTTGTTTTTGTTGTTGTTTTGGTTTTTTAAGATGTGAGGTCTCACCTTATTGGCCAGGCTGGTCTCAAGCTCCTTTCCT
2561 CAAGCAATCCTCCCACCTTGGCCTCCCAAAGAGCCACCTGTCCAATGATTTATCCTGTTTCTTAAGAACTGTCTTTACCT
2641 TCTTAGACATTTTGTCATACCATTCTAGAAGTCAAATTCCAAGTGCAGTGATTTTTTTTTTCCCTAGTCCATTATAGTTA
2721 ATCTTCTTGTTAGTGATCAAATACCAAAAGAGAAAAGCACAACCAGAAATTTTGGCTATTTGCTGCAAGTTGTAGGTCTT
2801 GGGCTCTATACTAAGAACTTGAAATTTTTAAATTAGTATCCCTGCCTAGGTGAAAAGTTTTTAATAAATGTGTTGAAAAT
2881 CAACTTTAAATCCATTTAATTTAGACTGGAGTGGGCGTGAGAAACTGCAAGTCTATTTCTACATATAAGGATATATTATT
2961 ATATTGTCCCATCCCACCACTACCTTTTTCTCAATTTCTATTTCTTTGTAGTTATTTTAGTAAAAGCCATTTGGATTCTG
3041 AGAAGCACTAATTCTTAGCTGTGATAGGTCTATGCAAGTAAGACAGAATCATTAAATGAAGCTCACTAAATGAAGTTCTC
3121 ATTTCTCTCCAACAGACTGTGCTAGCAAACTTCGTTTTCTTGATTGTATTTAAATAATTTAGTATCTCACTACGATAATA
3201 GTTTTTAACTGGAAGGGTGTGATGTGTTTTTTGTTTTTTGTTCTCAGAGTTGTCTTCTGAGATAATTATTACCAAGTCAT
3281 TTGTGGGGTTGTGTTTTTTTCACATCATGTGACAGAAATTATAACTCATAAGATTTAGGCATAATCTGGTTTTAAAACCT
3361 TGATTGAAACTGTTGTTTTTTAACTTAGCAGGCAGCCTAGGCCATGGCTGAAAAGAAGGGGTAAGTCCTTCATTGCATGA
3441 TGATGTGTGCAGGTTTTCCTGATTTTCTAATTTTTATTTTTGAATTCACATGTGTAATTTCACATCAATAACTTGTGTTT
3521 CTGAAATATCCTAACTAACTTGTTAATAAGGAAAGAAACCAGATTTGCTTAAATCTGTTCAAGGCTGACATTCTGAAATT
3601 CTAAACTGGAAATAACTTCCCAGAGTATTTGGAAAGGTTCTAAGTACAAGGATCAGGCCTAAAATAGCTCCTTGGGAAAG
3681 AAATTTCCTTTTTGATGAGAAAACTTAAAATATTGTTTTTGGTAATGTAAGCAGTTAAAAACATGACTTTAGAAAGACAG
3761 CTTAATGCGTATTCAAGCAAACCTTTGTTTTGTTGCTTTTGCTTTTGTTTGTAGAAGAGAGAGGAAGTTATTATACCAAA
3841 AAGTAATAGTATATGTAACTTTGAGTGAGGCTACTTATATCTTAGAATGGGTATCCTTGAACTATATCTACCCCACCATG
3921 GCTTAAAAAAATCAGTGGTATATATTGAGAATGTCAGTCATGAGCTTAGTGTTTAAGTAACACATCCCACTTACAGTTGT
4001 TTGCATGATTAGTCTTGTGTATCATGATGTTCAACTTTGCTTTTGCTGTGCCAGTTCAAAAATATCTTTTTTGCTAAAAA
4081 CTCTTAAAATTCATGACATAAGTTTTGTTTTGATCACCCGGTTTTATATAGTATTTCTGGGACCAAAAAATTTAAATATA
4161 CCTTTTTAATATAAAACAGAAGTTTGAAGCTGGAAAGATAGTGTTTATGGAAGATTTGTGTGCTTTTGTGTTTTTTAAAC
4241 CCGTCAGGCTGCTGGTAAGGCAGTTTCTAGGGCTCACTTTTCCTCCTTACCTCTTGACTAGTGTAGCATGTGGTATGTTT
4321 AAAATATTTCATTTTCTGCTTTGTAATTCTAAAGTCAACACTATACTGTATGTAGACAGGAGAGCTGATTTGTATATTTT
4401 AGTTATTTGGTCTAATCAAGCATAACTAAAGGGACTTCTTTTTTGATACTTTTCTCAAATTAAGTTTAAATATAGTATAC
4481 GGGCCACATTTCATGTCTTTGAAAGTGTTGTACATTACTGTAAACCAAGTACTCTGTCTACACCAGAGGGTGCTTTAACT
4561 GCAAAATATTTGAGAAACAATTCAGTCTCTCAAACATTTTGGCACAGTTCATCACTCCAGTTTGTTACTTTCTTGAGAAT
4641 AGTCCATTTTTTGTTTTTGTTATTGTACCGTATGTTCTGGTCATTGGAAACAGAACAGCTCATAGTTGGGTGATGTAATA
4721 TAATAACAGTAATATAACCTAGTAGTCATTTTGCTTCAAGTAATTTAATTAGATAGCAAAATCACTGCGGTTTGTTTATT
4801 ACACTTGTAGGGCTTTTTATCTTACTCAGTGACCATCACTACGAATGTCTTACATTGAAGCACAGACTGCAGAGCACTTG
4881 TTAACTTAGTCCTCCTGCATAATGCACTCGTGAAAAGTAGTGCTTGCTAGGTGTTTGAAGATTTTATGATCCGTGTGCTT
4961 GGGCTCGTTGAGTTATTTGTAAAATAAACATTTAGTTTGAGTTGATGCAGTAAGTTTTTTGGACTAGTAGTATCCAGGTC
5041 CCTACTCTACTGAAAATATAATCTTCACTATCTCCCCTTAACTCAGAGGAGATGTAGCATTTAGAACACCTTGAGACATG
5121 ACATTGTAAAATAGCTTGTTTTATGTTCCTGAAGCTATCTTGTTCTCTGTTAAAGCTACTAATTGTCTCAGTGTAAGTTT
5201 TAAATAAACATATTTCTTTAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ugUGAGAUUUCCCUUCGUGAAACa 5'
            ||| |||    || ||||||| 
Target 5' tgACTGTAATCCCAA-CACTTTGg 3'
 1443 - 1465 157.00 -9.82
2 
miRNA  3' ugugagauUUCCCUUC------GUGAAACa 5'
                  |:|||| |      ||||||| 
Target 5' tttgggccAGGGGATGGGGTCCCACTTTGt 3'
 1820 - 1849 150.00 -14.20
3 
miRNA  3' uguGAGAUUUCCCUUCGUGAAAca 5'
             :||||   ||:  ||||||  
Target 5' agtTTCTA---GGGCTCACTTTtc 3'
 4262 - 4282 134.00 -10.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26981678 12 COSMIC
COSN14448442 18 COSMIC
COSN28196079 18 COSMIC
COSN31605924 21 COSMIC
COSN30484117 41 COSMIC
COSN15323960 42 COSMIC
COSN30150648 50 COSMIC
COSN30163464 58 COSMIC
COSN30104266 61 COSMIC
COSN31600883 72 COSMIC
COSN26981677 77 COSMIC
COSN31586780 81 COSMIC
COSN30130184 84 COSMIC
COSN30474486 109 COSMIC
COSN28213841 173 COSMIC
rs11079018 4342 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1022561115 1 dbSNP
rs781809728 4 dbSNP
rs782143717 7 dbSNP
rs782658735 9 dbSNP
rs141272202 13 dbSNP
rs782701158 16 dbSNP
rs782167307 18 dbSNP
rs372525901 23 dbSNP
rs1308247225 26 dbSNP
rs1319094980 26 dbSNP
rs782178567 32 dbSNP
rs782441570 32 dbSNP
rs782529514 33 dbSNP
rs781853437 36 dbSNP
rs17498875 37 dbSNP
rs782117531 39 dbSNP
rs782684163 41 dbSNP
rs79313880 42 dbSNP
rs781877614 47 dbSNP
rs1457043779 52 dbSNP
rs1178859577 57 dbSNP
rs941398226 58 dbSNP
rs1421809594 69 dbSNP
rs889893562 72 dbSNP
rs34262423 78 dbSNP
rs1164046960 82 dbSNP
rs782337623 87 dbSNP
rs556843474 101 dbSNP
rs1328011155 102 dbSNP
rs782481584 113 dbSNP
rs922666870 113 dbSNP
rs781840609 116 dbSNP
rs1298941036 121 dbSNP
rs1376040133 123 dbSNP
rs1227000588 129 dbSNP
rs1312389428 130 dbSNP
rs1336122403 132 dbSNP
rs1235606936 136 dbSNP
rs1255676640 164 dbSNP
rs1316731641 170 dbSNP
rs782189986 171 dbSNP
rs781915829 174 dbSNP
rs782414683 176 dbSNP
rs1234225660 178 dbSNP
rs1482043446 184 dbSNP
rs1181081897 195 dbSNP
rs1256514577 202 dbSNP
rs989094310 207 dbSNP
rs1168434416 208 dbSNP
rs934602920 211 dbSNP
rs879983855 216 dbSNP
rs1421641910 222 dbSNP
rs925747067 231 dbSNP
rs1465144182 238 dbSNP
rs978582095 242 dbSNP
rs969886024 244 dbSNP
rs1356511025 245 dbSNP
rs782274078 250 dbSNP
rs992568573 254 dbSNP
rs782638057 260 dbSNP
rs1302636292 263 dbSNP
rs1356498943 265 dbSNP
rs1417225284 267 dbSNP
rs1276831534 276 dbSNP
rs1316798288 291 dbSNP
rs1274429045 293 dbSNP
rs550348219 294 dbSNP
rs1208984770 297 dbSNP
rs1280856098 300 dbSNP
rs1486518690 301 dbSNP
rs6503672 302 dbSNP
rs1187195521 305 dbSNP
rs1262429192 305 dbSNP
rs1475675057 305 dbSNP
rs1025985344 307 dbSNP
rs1421655108 321 dbSNP
rs782211586 325 dbSNP
rs1376492633 326 dbSNP
rs1436935557 333 dbSNP
rs1296693968 335 dbSNP
rs1340465120 340 dbSNP
rs961665623 346 dbSNP
rs1271499427 348 dbSNP
rs568215810 360 dbSNP
rs1364861766 367 dbSNP
rs546962370 369 dbSNP
rs1303655067 372 dbSNP
rs1005705848 376 dbSNP
rs1349554790 385 dbSNP
rs1214213418 392 dbSNP
rs782588517 394 dbSNP
rs1284968127 398 dbSNP
rs1447513948 404 dbSNP
rs1217854151 409 dbSNP
rs1243972272 415 dbSNP
rs889988429 422 dbSNP
rs527674478 424 dbSNP
rs1193287971 432 dbSNP
rs998273365 435 dbSNP
rs1395954820 456 dbSNP
rs1455708820 459 dbSNP
rs1157235348 462 dbSNP
rs1384693766 482 dbSNP
rs564790410 486 dbSNP
rs1401853923 488 dbSNP
rs1320820981 492 dbSNP
rs901134666 506 dbSNP
rs1053137684 519 dbSNP
rs1303432618 525 dbSNP
rs1372737221 527 dbSNP
rs1237426986 539 dbSNP
rs934548024 554 dbSNP
rs925872677 555 dbSNP
rs1225444465 557 dbSNP
rs1287607129 559 dbSNP
rs1450923617 564 dbSNP
rs1213170196 574 dbSNP
rs1253640967 575 dbSNP
rs551772872 577 dbSNP
rs187677114 581 dbSNP
rs1176986866 588 dbSNP
rs566903851 590 dbSNP
rs1470697623 601 dbSNP
rs948546439 605 dbSNP
rs551880559 607 dbSNP
rs1412287259 616 dbSNP
rs1461322757 616 dbSNP
rs1326008069 621 dbSNP
rs183928800 626 dbSNP
rs1444203842 633 dbSNP
rs915781793 637 dbSNP
rs992500025 647 dbSNP
rs1444153335 649 dbSNP
rs563138189 670 dbSNP
rs959827618 671 dbSNP
rs146548969 674 dbSNP
rs760928240 687 dbSNP
rs1233818877 688 dbSNP
rs1273953537 697 dbSNP
rs544435143 701 dbSNP
rs1337010543 709 dbSNP
rs918890952 716 dbSNP
rs1197027441 728 dbSNP
rs971775226 747 dbSNP
rs1438558686 748 dbSNP
rs782801526 764 dbSNP
rs1184440115 770 dbSNP
rs1017185765 790 dbSNP
rs1005841055 791 dbSNP
rs1475208203 796 dbSNP
rs529540418 805 dbSNP
rs954154224 812 dbSNP
rs1166273454 825 dbSNP
rs1419455019 836 dbSNP
rs1463580441 843 dbSNP
rs1166769233 861 dbSNP
rs1396797003 864 dbSNP
rs1028503065 870 dbSNP
rs998240793 873 dbSNP
rs901274803 874 dbSNP
rs1415373857 881 dbSNP
rs1295016920 887 dbSNP
rs1053634828 889 dbSNP
rs1338281815 914 dbSNP
rs1216896193 929 dbSNP
rs998852093 939 dbSNP
rs1340325104 944 dbSNP
rs904553910 946 dbSNP
rs1277026165 947 dbSNP
rs1485538447 961 dbSNP
rs1189323899 962 dbSNP
rs1373086125 962 dbSNP
rs1463253973 962 dbSNP
rs528439576 971 dbSNP
rs1374667555 976 dbSNP
rs192086570 979 dbSNP
rs948643742 988 dbSNP
rs540560651 993 dbSNP
rs372936738 996 dbSNP
rs938409055 1000 dbSNP
rs1327092857 1001 dbSNP
rs1229956324 1010 dbSNP
rs1273271946 1012 dbSNP
rs1347381611 1018 dbSNP
rs918996447 1025 dbSNP
rs559685796 1027 dbSNP
rs572484363 1031 dbSNP
rs1205055908 1053 dbSNP
rs1261879918 1056 dbSNP
rs1429742351 1057 dbSNP
rs963068664 1072 dbSNP
rs908918170 1077 dbSNP
rs186008885 1085 dbSNP
rs183198604 1086 dbSNP
rs1175283233 1087 dbSNP
rs1028470373 1088 dbSNP
rs1289356919 1089 dbSNP
rs976927706 1089 dbSNP
rs575207860 1092 dbSNP
rs1031746713 1094 dbSNP
rs1235213401 1103 dbSNP
rs557020786 1104 dbSNP
rs1306177362 1107 dbSNP
rs999381480 1110 dbSNP
rs1315481300 1113 dbSNP
rs1239008787 1114 dbSNP
rs1261856449 1121 dbSNP
rs190213014 1123 dbSNP
rs1487107768 1124 dbSNP
rs904481567 1128 dbSNP
rs1251759935 1129 dbSNP
rs1468691927 1132 dbSNP
rs1195095275 1133 dbSNP
rs5004986 1138 dbSNP
rs1021590456 1151 dbSNP
rs1159516781 1155 dbSNP
rs1365491260 1156 dbSNP
rs55861010 1161 dbSNP
rs55784751 1162 dbSNP
rs1012759832 1170 dbSNP
rs1162885640 1171 dbSNP
rs12945295 1174 dbSNP
rs1393823381 1174 dbSNP
rs1057002534 1175 dbSNP
rs938516766 1178 dbSNP
rs55999651 1179 dbSNP
rs1308076879 1195 dbSNP
rs55775937 1198 dbSNP
rs1319254541 1203 dbSNP
rs1231989850 1206 dbSNP
rs897687866 1222 dbSNP
rs1215224813 1226 dbSNP
rs1230854604 1227 dbSNP
rs1480081039 1233 dbSNP
rs541735675 1242 dbSNP
rs1252326578 1245 dbSNP
rs879959098 1247 dbSNP
rs1417296186 1251 dbSNP
rs1462060491 1253 dbSNP
rs1036110407 1256 dbSNP
rs1352990162 1258 dbSNP
rs1461608753 1263 dbSNP
rs1299165220 1264 dbSNP
rs941782611 1272 dbSNP
rs1413520811 1281 dbSNP
rs908849627 1285 dbSNP
rs1356621132 1291 dbSNP
rs1234622215 1304 dbSNP
rs767874876 1312 dbSNP
rs985810834 1329 dbSNP
rs1204775258 1334 dbSNP
rs1252914639 1340 dbSNP
rs931658710 1343 dbSNP
rs1186907980 1347 dbSNP
rs377221118 1348 dbSNP
rs1476112596 1349 dbSNP
rs1417453818 1354 dbSNP
rs114478495 1360 dbSNP
rs977441227 1362 dbSNP
rs534942318 1364 dbSNP
rs1356688801 1380 dbSNP
rs1433286308 1392 dbSNP
rs1312605018 1394 dbSNP
rs1032257550 1396 dbSNP
rs977502107 1432 dbSNP
rs570778006 1433 dbSNP
rs1021559300 1434 dbSNP
rs1214847544 1440 dbSNP
rs781860623 1448 dbSNP
rs551761654 1449 dbSNP
rs1012854021 1453 dbSNP
rs1345233088 1456 dbSNP
rs111618590 1457 dbSNP
rs1280693656 1459 dbSNP
rs372011743 1463 dbSNP
rs1213539570 1464 dbSNP
rs1240477688 1470 dbSNP
rs1485564941 1481 dbSNP
rs574178445 1484 dbSNP
rs782076845 1494 dbSNP
rs563915253 1495 dbSNP
rs1173414269 1500 dbSNP
rs1396065849 1510 dbSNP
rs1036617578 1523 dbSNP
rs1316820859 1525 dbSNP
rs941765570 1537 dbSNP
rs1344133030 1541 dbSNP
rs887506018 1554 dbSNP
rs1430851369 1560 dbSNP
rs769572037 1580 dbSNP
rs931626136 1581 dbSNP
rs922969152 1599 dbSNP
rs1233103270 1603 dbSNP
rs1303950734 1607 dbSNP
rs976989623 1609 dbSNP
rs1222041893 1618 dbSNP
rs944292461 1623 dbSNP
rs1447463647 1625 dbSNP
rs1216612041 1630 dbSNP
rs1249908240 1631 dbSNP
rs1467362441 1633 dbSNP
rs1193231491 1637 dbSNP
rs1254076715 1638 dbSNP
rs1479192160 1644 dbSNP
rs924776934 1655 dbSNP
rs1401728601 1670 dbSNP
rs1160828251 1672 dbSNP
rs1391631134 1690 dbSNP
rs1439764324 1691 dbSNP
rs1326126059 1693 dbSNP
rs529451184 1693 dbSNP
rs761622110 1694 dbSNP
rs1278679654 1704 dbSNP
rs1351321151 1709 dbSNP
rs782163882 1723 dbSNP
rs7216461 1725 dbSNP
rs1270159548 1751 dbSNP
rs914647972 1752 dbSNP
rs148927710 1758 dbSNP
rs1453482854 1759 dbSNP
rs528725723 1761 dbSNP
rs1180112006 1764 dbSNP
rs1232659477 1765 dbSNP
rs1470831539 1769 dbSNP
rs958696446 1792 dbSNP
rs1415070351 1795 dbSNP
rs1460491397 1798 dbSNP
rs578251412 1801 dbSNP
rs1164949792 1802 dbSNP
rs1392450038 1809 dbSNP
rs1002764446 1812 dbSNP
rs1407794361 1815 dbSNP
rs1328015770 1817 dbSNP
rs962287798 1820 dbSNP
rs1336115001 1821 dbSNP
rs564449861 1822 dbSNP
rs1232765681 1823 dbSNP
rs1273815703 1823 dbSNP
rs1291330431 1823 dbSNP
rs199666907 1823 dbSNP
rs1358820168 1824 dbSNP
rs1194283768 1825 dbSNP
rs1272799653 1828 dbSNP
rs545435170 1829 dbSNP
rs575240847 1831 dbSNP
rs1256045624 1842 dbSNP
rs1475135895 1844 dbSNP
rs1188055322 1847 dbSNP
rs1014865626 1849 dbSNP
rs1369697001 1849 dbSNP
rs1474258008 1856 dbSNP
rs1166937441 1876 dbSNP
rs1396997130 1880 dbSNP
rs1006044387 1885 dbSNP
rs1310798132 1894 dbSNP
rs1374776394 1899 dbSNP
rs1415316625 1916 dbSNP
rs887641844 1925 dbSNP
rs7216097 1936 dbSNP
rs1225567022 1937 dbSNP
rs1269858856 1942 dbSNP
rs1231096543 1947 dbSNP
rs1278552467 1950 dbSNP
rs1485671771 1957 dbSNP
rs1212213159 1958 dbSNP
rs995926586 1959 dbSNP
rs541941280 1960 dbSNP
rs1191796951 1965 dbSNP
rs1373313964 1968 dbSNP
rs574660806 1969 dbSNP
rs1171596727 1987 dbSNP
rs1040459537 1989 dbSNP
rs1394237362 1989 dbSNP
rs1435318574 1989 dbSNP
rs944282691 1991 dbSNP
rs924840947 1998 dbSNP
rs1042003155 2001 dbSNP
rs535310560 2004 dbSNP
rs1366210872 2008 dbSNP
rs376369617 2016 dbSNP
rs1230883202 2017 dbSNP
rs553173360 2024 dbSNP
rs1347587673 2025 dbSNP
rs534822960 2043 dbSNP
rs1258321543 2049 dbSNP
rs991494218 2053 dbSNP
rs1349105438 2062 dbSNP
rs1204051983 2063 dbSNP
rs1261810701 2064 dbSNP
rs371904918 2066 dbSNP
rs958790519 2081 dbSNP
rs928629593 2093 dbSNP
rs1191334801 2097 dbSNP
rs981830474 2098 dbSNP
rs1177902599 2103 dbSNP
rs962097584 2107 dbSNP
rs577165660 2110 dbSNP
rs1158139105 2117 dbSNP
rs1389458231 2125 dbSNP
rs1437613904 2132 dbSNP
rs1324099643 2138 dbSNP
rs1238942383 2141 dbSNP
rs1268265269 2141 dbSNP
rs782423316 2141 dbSNP
rs1330566233 2149 dbSNP
rs558941810 2151 dbSNP
rs1468595936 2152 dbSNP
rs1192708492 2158 dbSNP
rs539443574 2160 dbSNP
rs1248148770 2169 dbSNP
rs1418494796 2175 dbSNP
rs1182413289 2181 dbSNP
rs1006180044 2182 dbSNP
rs1458915320 2184 dbSNP
rs951818447 2194 dbSNP
rs1028836270 2195 dbSNP
rs995895429 2199 dbSNP
rs901609238 2204 dbSNP
rs1458545663 2205 dbSNP
rs569269798 2207 dbSNP
rs1040151505 2213 dbSNP
rs999585920 2214 dbSNP
rs1371600919 2220 dbSNP
rs1391362840 2225 dbSNP
rs1289557825 2228 dbSNP
rs782240185 2231 dbSNP
rs1230933762 2233 dbSNP
rs902212425 2243 dbSNP
rs1322016629 2270 dbSNP
rs1041950427 2274 dbSNP
rs1223298156 2277 dbSNP
rs1249455791 2278 dbSNP
rs1480171911 2279 dbSNP
rs947644287 2281 dbSNP
rs1253918849 2282 dbSNP
rs550777126 2287 dbSNP
rs1474152929 2293 dbSNP
rs1185906206 2327 dbSNP
rs535915529 2332 dbSNP
rs568231501 2340 dbSNP
rs1417232663 2341 dbSNP
rs1424663628 2344 dbSNP
rs1167139448 2346 dbSNP
rs1352940116 2347 dbSNP
rs1461813376 2348 dbSNP
rs546749515 2352 dbSNP
rs1308950034 2355 dbSNP
rs1372948331 2356 dbSNP
rs1413466043 2361 dbSNP
rs914708696 2362 dbSNP
rs746748491 2367 dbSNP
rs528664617 2376 dbSNP
rs937534606 2380 dbSNP
rs928696433 2383 dbSNP
rs1228886176 2384 dbSNP
rs1276428943 2385 dbSNP
rs781956641 2388 dbSNP
rs1210042878 2394 dbSNP
rs537017102 2398 dbSNP
rs1483637688 2406 dbSNP
rs1183624082 2412 dbSNP
rs1417649775 2417 dbSNP
rs780070885 2418 dbSNP
rs1169695502 2423 dbSNP
rs149848082 2429 dbSNP
rs1433458708 2451 dbSNP
rs1173531992 2457 dbSNP
rs1360214472 2459 dbSNP
rs1449613275 2464 dbSNP
rs185549300 2469 dbSNP
rs1360844394 2473 dbSNP
rs984669957 2493 dbSNP
rs1435359605 2500 dbSNP
rs1299609202 2511 dbSNP
rs951953324 2519 dbSNP
rs1233241875 2520 dbSNP
rs1279272845 2521 dbSNP
rs1313820788 2523 dbSNP
rs1212338671 2526 dbSNP
rs782322275 2530 dbSNP
rs1240422952 2542 dbSNP
rs1464658637 2543 dbSNP
rs782187299 2553 dbSNP
rs1028808647 2567 dbSNP
rs1189433333 2585 dbSNP
rs1250338724 2587 dbSNP
rs374447891 2589 dbSNP
rs1172313956 2591 dbSNP
rs1426501212 2598 dbSNP
rs1416592052 2601 dbSNP
rs1156400724 2603 dbSNP
rs35014758 2605 dbSNP
rs1019104870 2622 dbSNP
rs4796722 2627 dbSNP
rs902137465 2633 dbSNP
rs1322171219 2634 dbSNP
rs1368274006 2656 dbSNP
rs1021925534 2660 dbSNP
rs1439911155 2665 dbSNP
rs1275148739 2680 dbSNP
rs1369721964 2688 dbSNP
rs114676860 2691 dbSNP
rs893370576 2701 dbSNP
rs1209395027 2702 dbSNP
rs1328540222 2702 dbSNP
rs1270276806 2704 dbSNP
rs373628980 2711 dbSNP
rs1467268892 2717 dbSNP
rs868950510 2720 dbSNP
rs1247655356 2722 dbSNP
rs1479324970 2723 dbSNP
rs1175957157 2729 dbSNP
rs1472643604 2729 dbSNP
rs181284484 2740 dbSNP
rs1391845091 2742 dbSNP
rs1460590110 2744 dbSNP
rs189341450 2752 dbSNP
rs1351382078 2764 dbSNP
rs370517497 2770 dbSNP
rs1439984598 2775 dbSNP
rs559495606 2778 dbSNP
rs1046190897 2790 dbSNP
rs1278921171 2796 dbSNP
rs1350982387 2800 dbSNP
rs1229103228 2805 dbSNP
rs940791619 2808 dbSNP
rs1290223524 2825 dbSNP
rs907845735 2832 dbSNP
rs1333056523 2843 dbSNP
rs1209454724 2867 dbSNP
rs984805911 2870 dbSNP
rs1291103894 2872 dbSNP
rs1453713155 2883 dbSNP
rs1202803387 2907 dbSNP
rs1251740845 2912 dbSNP
rs1473164386 2915 dbSNP
rs930655896 2916 dbSNP
rs921834873 2917 dbSNP
rs1472288875 2930 dbSNP
rs1163443893 2931 dbSNP
rs974694437 2933 dbSNP
rs1408024854 2935 dbSNP
rs1307119162 2943 dbSNP
rs966271423 2945 dbSNP
rs1371093015 2950 dbSNP
rs1411585045 2955 dbSNP
rs1310001509 2958 dbSNP
rs1353621814 2961 dbSNP
rs1244103683 2967 dbSNP
rs1285023654 2979 dbSNP
rs552928334 2981 dbSNP
rs541227137 2992 dbSNP
rs1358662365 3000 dbSNP
rs1213181347 3008 dbSNP
rs1274364224 3013 dbSNP
rs1207890781 3015 dbSNP
rs1254826470 3018 dbSNP
rs1441369347 3027 dbSNP
rs1187580135 3044 dbSNP
rs1238856467 3045 dbSNP
rs1018782939 3048 dbSNP
rs1474184482 3050 dbSNP
rs978211456 3063 dbSNP
rs1390551494 3064 dbSNP
rs782632547 3070 dbSNP
rs376476255 3072 dbSNP
rs1010514001 3082 dbSNP
rs894848609 3084 dbSNP
rs536052522 3088 dbSNP
rs558560080 3092 dbSNP
rs1395537012 3093 dbSNP
rs1334836143 3094 dbSNP
rs1342555114 3114 dbSNP
rs1433152941 3120 dbSNP
rs1297388270 3126 dbSNP
rs1034561249 3138 dbSNP
rs1278843493 3139 dbSNP
rs782811206 3145 dbSNP
rs782503049 3154 dbSNP
rs1257656080 3164 dbSNP
rs1444987015 3171 dbSNP
rs1248457720 3189 dbSNP
rs907327863 3191 dbSNP
rs536000318 3193 dbSNP
rs576281295 3194 dbSNP
rs1173292700 3195 dbSNP
rs1404414269 3199 dbSNP
rs1455879586 3202 dbSNP
rs1320176787 3217 dbSNP
rs1366144796 3217 dbSNP
rs1437744806 3222 dbSNP
rs1299562294 3223 dbSNP
rs1331103152 3226 dbSNP
rs1234591456 3233 dbSNP
rs1257301385 3236 dbSNP
rs1347886236 3240 dbSNP
rs1207511364 3255 dbSNP
rs940746225 3263 dbSNP
rs186015263 3279 dbSNP
rs1465920672 3287 dbSNP
rs1211655202 3288 dbSNP
rs1266389537 3293 dbSNP
rs1200874651 3301 dbSNP
rs1433749565 3301 dbSNP
rs1361951450 3306 dbSNP
rs1471663449 3309 dbSNP
rs535491628 3318 dbSNP
rs568169013 3323 dbSNP
rs1389667410 3337 dbSNP
rs1459017846 3342 dbSNP
rs1292207337 3348 dbSNP
rs1390441926 3348 dbSNP
rs782587665 3349 dbSNP
rs1304094903 3360 dbSNP
rs1349106231 3362 dbSNP
rs1227248431 3363 dbSNP
rs373822780 3364 dbSNP
rs1330841721 3370 dbSNP
rs781993043 3374 dbSNP
rs921969781 3404 dbSNP
rs553098454 3407 dbSNP
rs534877974 3417 dbSNP
rs34227257 3422 dbSNP
rs944648548 3429 dbSNP
rs182322087 3440 dbSNP
rs1482651141 3441 dbSNP
rs911687105 3445 dbSNP
rs782427099 3447 dbSNP
rs1181635888 3451 dbSNP
rs1412780692 3481 dbSNP
rs1162913762 3490 dbSNP
rs1368077896 3502 dbSNP
rs781901294 3508 dbSNP
rs1295582690 3512 dbSNP
rs1369315438 3518 dbSNP
rs1409732485 3532 dbSNP
rs1308158616 3554 dbSNP
rs1351764817 3573 dbSNP
rs966543972 3576 dbSNP
rs1226079073 3579 dbSNP
rs1311596743 3595 dbSNP
rs782794234 3598 dbSNP
rs1321885009 3601 dbSNP
rs1246726792 3607 dbSNP
rs1272207142 3612 dbSNP
rs1341439744 3619 dbSNP
rs1205759289 3623 dbSNP
rs1252682716 3635 dbSNP
rs1481679376 3640 dbSNP
rs782130829 3641 dbSNP
rs1180143908 3644 dbSNP
rs989229013 3646 dbSNP
rs1255738805 3647 dbSNP
rs958990691 3651 dbSNP
rs1167416809 3658 dbSNP
rs1033312124 3671 dbSNP
rs1388679903 3673 dbSNP
rs1002161785 3680 dbSNP
rs1429715754 3703 dbSNP
rs140939198 3704 dbSNP
rs6503671 3713 dbSNP
rs1445191639 3726 dbSNP
rs570267019 3729 dbSNP
rs1301683999 3735 dbSNP
rs1379530338 3756 dbSNP
rs1005040020 3765 dbSNP
rs1397405096 3769 dbSNP
rs1295194364 3771 dbSNP
rs886642513 3773 dbSNP
rs1364160561 3779 dbSNP
rs782735720 3780 dbSNP
rs1228821209 3788 dbSNP
rs1276719161 3792 dbSNP
rs1310311172 3795 dbSNP
rs1208188235 3797 dbSNP
rs994928005 3801 dbSNP
rs1185617848 3804 dbSNP
rs1246378807 3811 dbSNP
rs900470130 3819 dbSNP
rs1189546585 3833 dbSNP
rs1392569727 3834 dbSNP
rs1413264503 3838 dbSNP
rs1039047870 3842 dbSNP
rs782637427 3855 dbSNP
rs1174817764 3856 dbSNP
rs1359214828 3863 dbSNP
rs944598381 3874 dbSNP
rs1318171400 3877 dbSNP
rs1363954242 3878 dbSNP
rs190485755 3880 dbSNP
rs1299468424 3881 dbSNP
rs1365473213 3890 dbSNP
rs1218547798 3909 dbSNP
rs529764522 3912 dbSNP
rs544927081 3914 dbSNP
rs1205587740 3915 dbSNP
rs1266484169 3917 dbSNP
rs1464558326 3918 dbSNP
rs1209825172 3931 dbSNP
rs1244183498 3931 dbSNP
rs1477354773 3932 dbSNP
rs1191093598 3936 dbSNP
rs1426443733 3938 dbSNP
rs1481146989 3965 dbSNP
rs781920295 3969 dbSNP
rs1156249719 3970 dbSNP
rs1387462620 3981 dbSNP
rs1457427978 3989 dbSNP
rs915078260 3990 dbSNP
rs184311312 3994 dbSNP
rs1435438317 4002 dbSNP
rs1294065213 4005 dbSNP
rs1369567272 4006 dbSNP
rs147292302 4007 dbSNP
rs868916245 4018 dbSNP
rs1286525506 4034 dbSNP
rs551422904 4040 dbSNP
rs1229221233 4043 dbSNP
rs1286831726 4051 dbSNP
rs1450274265 4052 dbSNP
rs368017358 4064 dbSNP
rs374110167 4065 dbSNP
rs371654380 4066 dbSNP
rs1247819104 4072 dbSNP
rs199737901 4073 dbSNP
rs543268140 4074 dbSNP
rs1410550706 4090 dbSNP
rs1472735989 4091 dbSNP
rs144311899 4092 dbSNP
rs1411116717 4100 dbSNP
rs1404564241 4112 dbSNP
rs1323891428 4113 dbSNP
rs1351613227 4117 dbSNP
rs782603205 4119 dbSNP
rs1024553355 4120 dbSNP
rs1349916800 4128 dbSNP
rs1410474286 4145 dbSNP
rs1005588575 4149 dbSNP
rs140358950 4150 dbSNP
rs1354442997 4158 dbSNP
rs1228118070 4165 dbSNP
rs1362278136 4168 dbSNP
rs35447856 4168 dbSNP
rs1203587572 4172 dbSNP
rs1251673878 4173 dbSNP
rs1483107882 4183 dbSNP
rs1027833624 4198 dbSNP
rs1183274408 4200 dbSNP
rs1235386863 4212 dbSNP
rs541818372 4215 dbSNP
rs994893891 4226 dbSNP
rs1472258453 4237 dbSNP
rs1163682341 4242 dbSNP
rs782173238 4243 dbSNP
rs200432930 4248 dbSNP
rs1167918561 4253 dbSNP
rs1371038561 4256 dbSNP
rs1039553010 4270 dbSNP
rs1410620433 4282 dbSNP
rs1330904248 4294 dbSNP
rs1338999807 4295 dbSNP
rs1447562351 4298 dbSNP
rs1285194173 4300 dbSNP
rs797040801 4312 dbSNP
rs868992185 4313 dbSNP
rs549349908 4336 dbSNP
rs11079018 4342 dbSNP
rs1274566765 4343 dbSNP
rs1343412149 4350 dbSNP
rs11653094 4353 dbSNP
rs1042268490 4363 dbSNP
rs761383109 4368 dbSNP
rs1244559399 4371 dbSNP
rs150533891 4377 dbSNP
rs1187636832 4378 dbSNP
rs559069976 4394 dbSNP
rs1463461943 4399 dbSNP
rs1169788296 4424 dbSNP
rs141654993 4432 dbSNP
rs1413934665 4433 dbSNP
rs1337661291 4443 dbSNP
rs937868535 4448 dbSNP
rs1408494315 4449 dbSNP
rs1297312380 4464 dbSNP
rs1433353517 4464 dbSNP
rs926378168 4465 dbSNP
rs1230232088 4475 dbSNP
rs1272613561 4477 dbSNP
rs537254298 4480 dbSNP
rs1200484641 4481 dbSNP
rs148397441 4481 dbSNP
rs1463220506 4497 dbSNP
rs908210395 4505 dbSNP
rs1248400160 4514 dbSNP
rs544054381 4528 dbSNP
rs950957935 4532 dbSNP
rs1376945764 4541 dbSNP
rs1027801241 4543 dbSNP
rs1177158608 4555 dbSNP
rs1431802665 4560 dbSNP
rs1455830050 4562 dbSNP
rs973550612 4564 dbSNP
rs782485356 4566 dbSNP
rs1320361535 4569 dbSNP
rs1386092647 4570 dbSNP
rs1384235350 4580 dbSNP
rs1322173849 4587 dbSNP
rs1330972785 4592 dbSNP
rs548645312 4595 dbSNP
rs1223601071 4596 dbSNP
rs1009398940 4607 dbSNP
rs1326713783 4615 dbSNP
rs1227377330 4619 dbSNP
rs1268322459 4623 dbSNP
rs890428037 4637 dbSNP
rs781808632 4640 dbSNP
rs1207783280 4653 dbSNP
rs9896025 4665 dbSNP
rs1452102135 4669 dbSNP
rs1009413186 4670 dbSNP
rs1431513077 4673 dbSNP
rs1471756566 4676 dbSNP
rs1158747038 4699 dbSNP
rs1364552238 4700 dbSNP
rs1455687797 4701 dbSNP
rs1161757485 4705 dbSNP
rs1390732766 4717 dbSNP
rs1406079265 4719 dbSNP
rs1304485693 4720 dbSNP
rs1348057363 4727 dbSNP
rs1408631587 4729 dbSNP
rs1307274166 4730 dbSNP
rs893704407 4738 dbSNP
rs1053656641 4744 dbSNP
rs1360133890 4745 dbSNP
rs937840577 4762 dbSNP
rs1224588954 4764 dbSNP
rs1249480980 4774 dbSNP
rs905066306 4779 dbSNP
rs565710040 4784 dbSNP
rs111942712 4788 dbSNP
rs1251524405 4793 dbSNP
rs760533408 4794 dbSNP
rs1421106060 4797 dbSNP
rs949169104 4802 dbSNP
rs4796616 4819 dbSNP
rs75914986 4834 dbSNP
rs1425897761 4835 dbSNP
rs930991509 4843 dbSNP
rs1369181468 4848 dbSNP
rs920835602 4849 dbSNP
rs1428540561 4858 dbSNP
rs1298244442 4860 dbSNP
rs1375147282 4870 dbSNP
rs574282799 4881 dbSNP
rs1311791974 4888 dbSNP
rs1383297664 4892 dbSNP
rs1247834722 4893 dbSNP
rs1272408413 4899 dbSNP
rs1341292080 4907 dbSNP
rs1204000721 4909 dbSNP
rs1251955378 4910 dbSNP
rs1180307653 4922 dbSNP
rs1481771940 4922 dbSNP
rs1255690209 4926 dbSNP
rs1445629183 4933 dbSNP
rs782122431 4949 dbSNP
rs531452271 4952 dbSNP
rs1449377318 4953 dbSNP
rs1170591740 4958 dbSNP
rs1355740140 4965 dbSNP
rs1464069768 4966 dbSNP
rs561227043 4967 dbSNP
rs1406282245 4975 dbSNP
rs1454383022 4976 dbSNP
rs1295126920 4985 dbSNP
rs542546881 4989 dbSNP
rs1364446912 4997 dbSNP
rs574470090 5008 dbSNP
rs1296439870 5010 dbSNP
rs8066947 5011 dbSNP
rs1208033446 5021 dbSNP
rs1021016269 5038 dbSNP
rs77331851 5041 dbSNP
rs1461935501 5053 dbSNP
rs782351568 5057 dbSNP
rs1246547857 5058 dbSNP
rs1485849519 5059 dbSNP
rs1187647457 5067 dbSNP
rs1422210731 5070 dbSNP
rs1430965197 5072 dbSNP
rs1174668275 5077 dbSNP
rs1429640267 5081 dbSNP
rs4796615 5082 dbSNP
rs1318353052 5083 dbSNP
rs1387600312 5090 dbSNP
rs1431148667 5092 dbSNP
rs958064766 5097 dbSNP
rs1290589283 5098 dbSNP
rs774251602 5104 dbSNP
rs1365317528 5107 dbSNP
rs1044777 5108 dbSNP
rs1217607733 5114 dbSNP
rs1282708883 5138 dbSNP
rs781912184 5148 dbSNP
rs782429945 5153 dbSNP
rs782269338 5157 dbSNP
rs1266427950 5165 dbSNP
rs1316719519 5181 dbSNP
rs904993136 5187 dbSNP
rs1046675185 5190 dbSNP
rs1216879768 5200 dbSNP
rs1013312454 5210 dbSNP
rs1487790164 5214 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124A_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + A ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545212. RNA binding protein: AGO1. Condition:Control PAR-CLIP data was present in GSM545214. RNA binding protein: AGO3. Condition:Control PAR-CLIP data was present in GSM545217. RNA binding protein: AGO2. Condition:miR-7 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 3 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 55175.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714645. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' ugUGAGAUUUCCCU-U-CGUGAAACa 5'
            |:|:||   | | |  :|||||| 
Target 5' caAUUUUAUUUGCACAUUUACUUUG- 3'
 		4 - 28
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 4 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 55175.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065669. RNA binding protein: AGO1. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
Experimental Support 5 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' ugUGAGAUUUCCCU-U-CGUGAAACa 5'
            |:|:||   | | |  :|||||| 
Target 5' caAUUUUAUUUGCACAUUUACUUUG- 3'
 		4 - 28
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset Chi_124A_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + A
Location of target site ENST00000319121.3 | 3UTR | UUUGGAGGAGGCUGAGGUGGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM545212
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / Control
Location of target site ENST00000319121.3 | 3UTR | CACCAAUUUUAUUUGCACAUUUACUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM545214
Method / RBP PAR-CLIP / AGO3
Cell line / Condition HEK293 / Control
Location of target site ENST00000319121.3 | 3UTR | CACCAAUUUUAUUUGCACAUUUACUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM545217
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-7 transfection
Location of target site ENST00000319121.3 | 3UTR | CUUUAAGCACCAAUUUUAUUUGCACAUUUAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM714645
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000319121.3 | 3UTR | CACCAAUUUUAUUUGCACAUUUACUUUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM1065669
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_8
Location of target site ENST00000319121.3 | 3UTR | CACCAAUUUUAUUUGCACAUUUACUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000319121.3 | 3UTR | CACCAAUUUUAUUUGCACAUUUACUUUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
BRCA -0.525 0.03 -0.626 0.01 14 Click to see details
HNSC -0.341 0.23 -0.179 0.35 7 Click to see details
LIHC -0.234 0.42 -0.500 0.33 3 Click to see details
LIHC -0.234 0.42 -0.500 0.33 3 Click to see details
LIHC -0.234 0.42 -0.500 0.33 3 Click to see details
LIHC -0.234 0.42 -0.500 0.33 3 Click to see details
362 hsa-miR-520g-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT004276 VEGFA vascular endothelial growth factor A 2 1
MIRT061377 WEE1 WEE1 G2 checkpoint kinase 2 2
MIRT070863 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 4
MIRT074319 TNRC6A trinucleotide repeat containing 6A 2 4
MIRT081126 LDLR low density lipoprotein receptor 2 6
MIRT093444 MSMO1 methylsterol monooxygenase 1 2 2
MIRT103397 CBX3 chromobox 3 2 2
MIRT107536 VLDLR very low density lipoprotein receptor 2 2
MIRT109624 KLHL15 kelch like family member 15 2 4
MIRT119717 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT130126 TXNIP thioredoxin interacting protein 2 2
MIRT133699 SKI SKI proto-oncogene 2 2
MIRT140155 SPRED1 sprouty related EVH1 domain containing 1 2 2
MIRT153990 PRNP prion protein 2 2
MIRT161898 FXR1 FMR1 autosomal homolog 1 2 2
MIRT164670 WHSC1 nuclear receptor binding SET domain protein 2 2 4
MIRT178073 SAMD8 sterile alpha motif domain containing 8 2 2
MIRT193026 TMOD3 tropomodulin 3 2 2
MIRT216879 MSH3 mutS homolog 3 2 2
MIRT230977 PRRG4 proline rich and Gla domain 4 2 2
MIRT242752 FNBP1L formin binding protein 1 like 2 2
MIRT249018 PABPC3 poly(A) binding protein cytoplasmic 3 2 8
MIRT254769 XRCC6 X-ray repair cross complementing 6 2 6
MIRT266862 SLC25A44 solute carrier family 25 member 44 2 2
MIRT275453 TMPO thymopoietin 2 2
MIRT285530 CDT1 chromatin licensing and DNA replication factor 1 2 2
MIRT286959 SOCS7 suppressor of cytokine signaling 7 2 2
MIRT301219 SH3BP4 SH3 domain binding protein 4 2 2
MIRT325706 CSTF2 cleavage stimulation factor subunit 2 2 2
MIRT437832 SMAD7 SMAD family member 7 3 1
MIRT442639 TBC1D12 TBC1 domain family member 12 2 2
MIRT443433 MAPT microtubule associated protein tau 2 2
MIRT446289 RIMKLB ribosomal modification protein rimK like family member B 2 2
MIRT447962 WDR77 WD repeat domain 77 2 2
MIRT454271 PSMA1 proteasome subunit alpha 1 2 2
MIRT454809 NEDD9 neural precursor cell expressed, developmentally down-regulated 9 2 2
MIRT456031 CRYZ crystallin zeta 2 8
MIRT462068 CCDC77 coiled-coil domain containing 77 2 4
MIRT463549 ZBTB5 zinc finger and BTB domain containing 5 2 4
MIRT470351 PPP2R5E protein phosphatase 2 regulatory subunit B'epsilon 2 2
MIRT474452 KLHL11 kelch like family member 11 2 10
MIRT476644 G2E3 G2/M-phase specific E3 ubiquitin protein ligase 2 2
MIRT481110 B2M beta-2-microglobulin 2 2
MIRT481790 APEX1 apurinic/apyrimidinic endodeoxyribonuclease 1 2 2
MIRT482106 AKT3 AKT serine/threonine kinase 3 2 4
MIRT482526 ACTB actin beta 2 4
MIRT485571 FOXQ1 forkhead box Q1 2 2
MIRT486010 LPAR2 lysophosphatidic acid receptor 2 2 2
MIRT493607 HMGB3 high mobility group box 3 2 6
MIRT495181 MUC20 mucin 20, cell surface associated 2 2
MIRT496046 MORC1 MORC family CW-type zinc finger 1 2 2
MIRT496734 TRIM31 tripartite motif containing 31 2 2
MIRT497421 FAM46A family with sequence similarity 46 member A 2 2
MIRT497493 RGS17 regulator of G protein signaling 17 2 2
MIRT497751 OXGR1 oxoglutarate receptor 1 2 2
MIRT498355 ABHD17B abhydrolase domain containing 17B 2 2
MIRT501454 PTPN4 protein tyrosine phosphatase, non-receptor type 4 2 8
MIRT501584 PLEKHA1 pleckstrin homology domain containing A1 2 10
MIRT501781 NRBF2 nuclear receptor binding factor 2 2 6
MIRT506503 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 2 2
MIRT507414 ELK4 ELK4, ETS transcription factor 2 2
MIRT508557 CEP72 centrosomal protein 72 2 4
MIRT508726 ZNF682 zinc finger protein 682 2 4
MIRT508762 IPP intracisternal A particle-promoted polypeptide 2 2
MIRT508818 GPR155 G protein-coupled receptor 155 2 2
MIRT509112 BMP8B bone morphogenetic protein 8b 2 6
MIRT509273 NPM3 nucleophosmin/nucleoplasmin 3 2 6
MIRT511537 HMGB1 high mobility group box 1 2 6
MIRT514118 SERF2 small EDRK-rich factor 2 2 2
MIRT514302 FXYD5 FXYD domain containing ion transport regulator 5 2 6
MIRT514962 SIGLEC11 sialic acid binding Ig like lectin 11 2 2
MIRT515557 TMEM134 transmembrane protein 134 2 2
MIRT516042 MED18 mediator complex subunit 18 2 2
MIRT516540 MIXL1 Mix paired-like homeobox 2 2
MIRT516992 COX19 COX19, cytochrome c oxidase assembly factor 2 4
MIRT517169 SLC28A1 solute carrier family 28 member 1 2 2
MIRT517242 PRIM1 DNA primase subunit 1 2 4
MIRT517722 KIF1C kinesin family member 1C 2 2
MIRT517797 EFCAB11 EF-hand calcium binding domain 11 2 4
MIRT517997 SLC16A13 solute carrier family 16 member 13 2 2
MIRT518033 ABHD15 abhydrolase domain containing 15 2 4
MIRT518843 NEK8 NIMA related kinase 8 2 2
MIRT518874 NKD1 naked cuticle homolog 1 2 2
MIRT520138 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT521531 QSOX1 quiescin sulfhydryl oxidase 1 2 4
MIRT522855 KIAA1551 KIAA1551 2 2
MIRT522976 INTU inturned planar cell polarity protein 2 2
MIRT523064 HYPK huntingtin interacting protein K 2 2
MIRT523421 GPR157 G protein-coupled receptor 157 2 2
MIRT524077 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT524277 CYCS cytochrome c, somatic 2 2
MIRT524326 CRLF3 cytokine receptor like factor 3 2 4
MIRT524374 CREB1 cAMP responsive element binding protein 1 2 2
MIRT524439 CNKSR3 CNKSR family member 3 2 2
MIRT524756 BCL2L2 BCL2 like 2 2 2
MIRT526621 NME6 NME/NM23 nucleoside diphosphate kinase 6 2 2
MIRT529610 H1F0 H1 histone family member 0 2 2
MIRT529984 TNFAIP8L1 TNF alpha induced protein 8 like 1 2 6
MIRT530605 C7orf33 chromosome 7 open reading frame 33 2 4
MIRT531759 TXK TXK tyrosine kinase 2 4
MIRT532031 FHDC1 FH2 domain containing 1 2 2
MIRT532107 RRP8 ribosomal RNA processing 8 2 2
MIRT532920 ZNF385A zinc finger protein 385A 2 2
MIRT533005 ZFHX3 zinc finger homeobox 3 2 4
MIRT533102 YOD1 YOD1 deubiquitinase 2 2
MIRT534262 SLC12A7 solute carrier family 12 member 7 2 2
MIRT534458 SCML2 Scm polycomb group protein like 2 2 4
MIRT534982 PRR11 proline rich 11 2 2
MIRT536679 IKZF5 IKAROS family zinc finger 5 2 2
MIRT537431 FBXL7 F-box and leucine rich repeat protein 7 2 2
MIRT538035 DNAJB6 DnaJ heat shock protein family (Hsp40) member B6 2 2
MIRT539717 EIF3H eukaryotic translation initiation factor 3 subunit H 2 2
MIRT540260 FAM89A family with sequence similarity 89 member A 2 2
MIRT540372 MASTL microtubule associated serine/threonine kinase like 2 2
MIRT540519 CXCL10 C-X-C motif chemokine ligand 10 2 2
MIRT540651 ZNF514 zinc finger protein 514 2 2
MIRT540921 KCNA7 potassium voltage-gated channel subfamily A member 7 2 2
MIRT541156 PABPC1 poly(A) binding protein cytoplasmic 1 2 4
MIRT541745 ZC3HAV1 zinc finger CCCH-type containing, antiviral 1 2 2
MIRT542029 PEX2 peroxisomal biogenesis factor 2 2 2
MIRT542036 PTRF caveolae associated protein 1 2 2
MIRT542127 DIS3L DIS3 like exosome 3'-5' exoribonuclease 2 2
MIRT542252 HSPA4L heat shock protein family A (Hsp70) member 4 like 2 2
MIRT542354 MED16 mediator complex subunit 16 2 2
MIRT542466 AKR7A2 aldo-keto reductase family 7 member A2 2 2
MIRT542505 WDR13 WD repeat domain 13 2 2
MIRT542712 RPS15A ribosomal protein S15a 2 2
MIRT542958 FOXK1 forkhead box K1 2 2
MIRT543179 FICD FIC domain containing 2 2
MIRT552884 WASL Wiskott-Aldrich syndrome like 2 4
MIRT554997 RAB39B RAB39B, member RAS oncogene family 2 2
MIRT555187 PRUNE2 prune homolog 2 2 2
MIRT555236 PRICKLE2 prickle planar cell polarity protein 2 2 2
MIRT555451 POLR3A RNA polymerase III subunit A 2 2
MIRT557811 FOXO1 forkhead box O1 2 4
MIRT558161 ELAVL2 ELAV like RNA binding protein 2 2 2
MIRT558753 CHERP calcium homeostasis endoplasmic reticulum protein 2 2
MIRT558765 CFL2 cofilin 2 2 2
MIRT559114 C16orf52 chromosome 16 open reading frame 52 2 2
MIRT561823 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 2
MIRT562486 CELSR3 cadherin EGF LAG seven-pass G-type receptor 3 2 2
MIRT566139 RACGAP1 Rac GTPase activating protein 1 2 2
MIRT566951 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT566965 LBR lamin B receptor 2 2
MIRT567845 DCAF8 DDB1 and CUL4 associated factor 8 2 2
MIRT568209 CAV1 caveolin 1 2 2
MIRT568398 ATF7IP activating transcription factor 7 interacting protein 2 2
MIRT569177 DMD dystrophin 2 2
MIRT570687 FZD5 frizzled class receptor 5 2 2
MIRT572245 ANP32E acidic nuclear phosphoprotein 32 family member E 2 2
MIRT572662 AGMAT agmatinase 2 4
MIRT575209 Piwil2 piwi-like RNA-mediated gene silencing 2 2 5
MIRT575985 Fem1a feminization 1 homolog a (C. elegans) 2 5
MIRT606843 FEM1A fem-1 homolog A 2 7
MIRT608364 PIWIL2 piwi like RNA-mediated gene silencing 2 2 7
MIRT608734 MYH9 myosin heavy chain 9 2 2
MIRT612598 RANGAP1 Ran GTPase activating protein 1 2 2
MIRT614247 WDR53 WD repeat domain 53 2 4
MIRT615162 SPIB Spi-B transcription factor 2 2
MIRT615467 BNC2 basonuclin 2 2 2
MIRT615812 COQ7 coenzyme Q7, hydroxylase 2 2
MIRT619490 QSOX2 quiescin sulfhydryl oxidase 2 2 2
MIRT619825 POLM DNA polymerase mu 2 4
MIRT623527 KCNK10 potassium two pore domain channel subfamily K member 10 2 2
MIRT624353 CHRM3 cholinergic receptor muscarinic 3 2 2
MIRT625978 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT626207 PNRC1 proline rich nuclear receptor coactivator 1 2 4
MIRT626915 HIST1H2BG histone cluster 1 H2B family member g 2 2
MIRT628563 MELK maternal embryonic leucine zipper kinase 2 2
MIRT630116 PNPLA3 patatin like phospholipase domain containing 3 2 2
MIRT631328 CARHSP1 calcium regulated heat stable protein 1 2 2
MIRT631514 TTC4 tetratricopeptide repeat domain 4 2 2
MIRT633106 CBX5 chromobox 5 2 2
MIRT634084 APOH apolipoprotein H 2 2
MIRT634644 HIP1 huntingtin interacting protein 1 2 4
MIRT634941 GTF2H2C GTF2H2 family member C 2 4
MIRT639434 PKP1 plakophilin 1 2 2
MIRT640365 C1orf210 chromosome 1 open reading frame 210 2 2
MIRT640717 CEP68 centrosomal protein 68 2 2
MIRT641216 TRIB1 tribbles pseudokinase 1 2 4
MIRT642272 SMIM17 small integral membrane protein 17 2 2
MIRT644010 PPP1R3G protein phosphatase 1 regulatory subunit 3G 2 2
MIRT645145 CUBN cubilin 2 2
MIRT645199 POLR3F RNA polymerase III subunit F 2 2
MIRT653159 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT654474 RANBP2 RAN binding protein 2 2 2
MIRT656176 MRPL44 mitochondrial ribosomal protein L44 2 2
MIRT658856 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT662111 LACTB lactamase beta 2 2
MIRT662393 ICA1L islet cell autoantigen 1 like 2 4
MIRT663405 SYT17 synaptotagmin 17 2 2
MIRT663852 LEPROTL1 leptin receptor overlapping transcript like 1 2 2
MIRT663934 ZNF554 zinc finger protein 554 2 2
MIRT664214 LSM3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated 2 2
MIRT664379 CYB5A cytochrome b5 type A 2 2
MIRT672156 PLEKHH1 pleckstrin homology, MyTH4 and FERM domain containing H1 2 2
MIRT673120 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT676082 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT676772 SNX2 sorting nexin 2 2 2
MIRT677106 MFSD11 major facilitator superfamily domain containing 11 2 4
MIRT677142 DEGS1 delta 4-desaturase, sphingolipid 1 2 2
MIRT677247 C15orf40 chromosome 15 open reading frame 40 2 2
MIRT677591 PIK3C2A phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha 2 2
MIRT678311 NPHS1 NPHS1, nephrin 2 2
MIRT678528 P2RX7 purinergic receptor P2X 7 2 2
MIRT678732 SRCAP Snf2 related CREBBP activator protein 2 2
MIRT679619 RRP36 ribosomal RNA processing 36 2 2
MIRT680134 ADRBK2 G protein-coupled receptor kinase 3 2 2
MIRT680358 GATAD1 GATA zinc finger domain containing 1 2 4
MIRT680685 ZNF785 zinc finger protein 785 2 2
MIRT681824 N4BP2L2 NEDD4 binding protein 2 like 2 2 2
MIRT683315 C19orf40 Fanconi anemia core complex associated protein 24 1 1
MIRT683384 ESR2 estrogen receptor 2 2 2
MIRT683490 ZNF7 zinc finger protein 7 2 2
MIRT683522 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT683687 MICA MHC class I polypeptide-related sequence A 2 2
MIRT683871 OCIAD1 OCIA domain containing 1 2 2
MIRT683942 MYLK3 myosin light chain kinase 3 2 2
MIRT683973 QRFPR pyroglutamylated RFamide peptide receptor 2 2
MIRT684048 FOLR1 folate receptor 1 2 2
MIRT684078 TLR7 toll like receptor 7 2 2
MIRT684130 CEP104 centrosomal protein 104 2 2
MIRT684356 BCAS4 breast carcinoma amplified sequence 4 2 2
MIRT684489 GPR137B G protein-coupled receptor 137B 2 2
MIRT684570 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT684613 GTF2IRD2B GTF2I repeat domain containing 2B 2 2
MIRT684645 PDE4C phosphodiesterase 4C 2 2
MIRT684709 LRRD1 leucine rich repeats and death domain containing 1 2 2
MIRT684740 DNAJB13 DnaJ heat shock protein family (Hsp40) member B13 2 2
MIRT684783 MYO1F myosin IF 2 2
MIRT684917 CD28 CD28 molecule 2 2
MIRT685193 DCTN5 dynactin subunit 5 2 2
MIRT685242 F2RL1 F2R like trypsin receptor 1 2 2
MIRT685312 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT685349 CCL5 C-C motif chemokine ligand 5 2 2
MIRT685574 KCNK6 potassium two pore domain channel subfamily K member 6 2 2
MIRT685630 C12orf49 chromosome 12 open reading frame 49 2 2
MIRT685658 C11orf1 chromosome 11 open reading frame 1 2 2
MIRT685707 BHMT2 betaine--homocysteine S-methyltransferase 2 2 2
MIRT685737 C12orf65 chromosome 12 open reading frame 65 2 2
MIRT685779 ZNF426 zinc finger protein 426 2 2
MIRT685879 RTN2 reticulon 2 2 2
MIRT685951 PTGIS prostaglandin I2 synthase 2 2
MIRT686103 TNIP3 TNFAIP3 interacting protein 3 2 2
MIRT686152 HS3ST1 heparan sulfate-glucosamine 3-sulfotransferase 1 2 2
MIRT686281 WWC1 WW and C2 domain containing 1 2 2
MIRT686319 VPS53 VPS53, GARP complex subunit 2 2
MIRT686359 USP15 ubiquitin specific peptidase 15 2 2
MIRT686388 UBE2V2 ubiquitin conjugating enzyme E2 V2 2 2
MIRT686440 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT686523 TRAF3IP2 TRAF3 interacting protein 2 2 2
MIRT686692 TIMM10 translocase of inner mitochondrial membrane 10 2 2
MIRT686823 SLC7A11 solute carrier family 7 member 11 2 2
MIRT686879 SLC1A5 solute carrier family 1 member 5 2 2
MIRT686912 SGTB small glutamine rich tetratricopeptide repeat containing beta 2 2
MIRT687042 RNF115 ring finger protein 115 2 2
MIRT687075 RABGAP1L RAB GTPase activating protein 1 like 2 2
MIRT687250 PDHB pyruvate dehydrogenase E1 beta subunit 2 2
MIRT687401 NSUN4 NOP2/Sun RNA methyltransferase family member 4 2 2
MIRT687498 NFATC2IP nuclear factor of activated T-cells 2 interacting protein 2 2
MIRT687645 LRIF1 ligand dependent nuclear receptor interacting factor 1 2 2
MIRT687856 ISCA2 iron-sulfur cluster assembly 2 2 2
MIRT687927 HOOK3 hook microtubule tethering protein 3 2 2
MIRT687979 GTF2IRD2 GTF2I repeat domain containing 2 2 2
MIRT688110 GK5 glycerol kinase 5 (putative) 2 2
MIRT688121 GEMIN8 gem nuclear organelle associated protein 8 2 2
MIRT688213 FKBP14 FK506 binding protein 14 2 2
MIRT688270 FAM213A family with sequence similarity 213 member A 2 2
MIRT688465 DNAJB4 DnaJ heat shock protein family (Hsp40) member B4 2 2
MIRT688503 DDI2 DNA damage inducible 1 homolog 2 2 2
MIRT688633 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT688676 CPT1A carnitine palmitoyltransferase 1A 2 2
MIRT688826 CAPZA2 capping actin protein of muscle Z-line alpha subunit 2 2 2
MIRT689122 ZBTB25 zinc finger and BTB domain containing 25 2 2
MIRT689170 ZNF665 zinc finger protein 665 2 2
MIRT689795 GTF2H3 general transcription factor IIH subunit 3 2 2
MIRT689842 HIST1H2BJ histone cluster 1 H2B family member j 2 2
MIRT690364 RPL37A ribosomal protein L37a 2 2
MIRT690736 IRAK4 interleukin 1 receptor associated kinase 4 2 2
MIRT690982 ZNF578 zinc finger protein 578 2 2
MIRT691073 NUGGC nuclear GTPase, germinal center associated 2 2
MIRT691328 KIAA1841 KIAA1841 2 2
MIRT691493 FOXRED2 FAD dependent oxidoreductase domain containing 2 2 2
MIRT691575 CCDC125 coiled-coil domain containing 125 2 2
MIRT692069 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT692105 CXorf38 chromosome X open reading frame 38 2 4
MIRT692209 NOL9 nucleolar protein 9 2 2
MIRT692319 RFK riboflavin kinase 2 2
MIRT692380 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT692441 METTL8 methyltransferase like 8 2 2
MIRT692542 PARD3 par-3 family cell polarity regulator 2 2
MIRT692605 GDF5OS growth differentiation factor 5 opposite strand 2 2
MIRT692786 SYNPO2L synaptopodin 2 like 2 2
MIRT692816 C1orf50 chromosome 1 open reading frame 50 2 2
MIRT692877 RBM41 RNA binding motif protein 41 2 2
MIRT692988 LGSN lengsin, lens protein with glutamine synthetase domain 2 2
MIRT693195 MKI67 marker of proliferation Ki-67 2 2
MIRT693350 RNF34 ring finger protein 34 2 2
MIRT694107 ZNF446 zinc finger protein 446 2 2
MIRT694194 ZNF347 zinc finger protein 347 2 2
MIRT694661 C14orf119 chromosome 14 open reading frame 119 2 2
MIRT694815 STX4 syntaxin 4 2 2
MIRT694935 ANKS4B ankyrin repeat and sterile alpha motif domain containing 4B 2 2
MIRT695181 SLC25A33 solute carrier family 25 member 33 2 2
MIRT695617 VBP1 VHL binding protein 1 2 2
MIRT695661 MAN2B2 mannosidase alpha class 2B member 2 2 2
MIRT695832 ABCG8 ATP binding cassette subfamily G member 8 2 2
MIRT695923 ZNF174 zinc finger protein 174 2 2
MIRT695973 EIF2B2 eukaryotic translation initiation factor 2B subunit beta 2 2
MIRT696184 GNB5 G protein subunit beta 5 2 2
MIRT696444 SUGP1 SURP and G-patch domain containing 1 2 2
MIRT696861 UBOX5 U-box domain containing 5 2 2
MIRT696905 C14orf105 coiled-coil domain containing 198 2 2
MIRT697247 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697392 ZMAT3 zinc finger matrin-type 3 2 2
MIRT697984 TSPAN6 tetraspanin 6 2 2
MIRT698331 TMEM127 transmembrane protein 127 2 2
MIRT699267 SLC6A4 solute carrier family 6 member 4 2 2
MIRT699318 SLC35F5 solute carrier family 35 member F5 2 4
MIRT699634 SH3BP5 SH3 domain binding protein 5 2 2
MIRT699697 SF3B3 splicing factor 3b subunit 3 2 2
MIRT699768 SEMA4D semaphorin 4D 2 2
MIRT700047 RPL14 ribosomal protein L14 2 2
MIRT700104 RNF19B ring finger protein 19B 2 2
MIRT701110 PAPD5 poly(A) RNA polymerase D5, non-canonical 2 2
MIRT701296 NUDT3 nudix hydrolase 3 2 2
MIRT702050 METTL21A methyltransferase like 21A 2 2
MIRT702088 MCFD2 multiple coagulation factor deficiency 2 2 2
MIRT702381 KLF10 Kruppel like factor 10 2 2
MIRT702526 KCND3 potassium voltage-gated channel subfamily D member 3 2 2
MIRT702582 JARID2 jumonji and AT-rich interaction domain containing 2 2 2
MIRT702945 HIPK3 homeodomain interacting protein kinase 3 2 2
MIRT703093 GPRIN3 GPRIN family member 3 2 2
MIRT704010 EFCAB14 EF-hand calcium binding domain 14 2 2
MIRT704112 DRAXIN dorsal inhibitory axon guidance protein 2 2
MIRT704147 DNAL1 dynein axonemal light chain 1 2 2
MIRT704197 LDHD lactate dehydrogenase D 2 2
MIRT704445 CTNNB1 catenin beta 1 2 2
MIRT704764 CDKN2AIPNL CDKN2A interacting protein N-terminal like 2 2
MIRT705084 C4orf29 abhydrolase domain containing 18 2 2
MIRT705350 ATP1B3 ATPase Na+/K+ transporting subunit beta 3 2 2
MIRT706108 ENTPD4 ectonucleoside triphosphate diphosphohydrolase 4 2 2
MIRT706278 SLC35F6 solute carrier family 35 member F6 2 2
MIRT706313 CCDC30 coiled-coil domain containing 30 2 2
MIRT706353 STAC2 SH3 and cysteine rich domain 2 2 2
MIRT706403 HAS2 hyaluronan synthase 2 2 2
MIRT706516 MTMR9 myotubularin related protein 9 2 2
MIRT707828 TMEM133 transmembrane protein 133 2 2
MIRT708370 CDIPT CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 2
MIRT708450 MAPKAPK5 mitogen-activated protein kinase-activated protein kinase 5 2 2
MIRT708513 CHCHD3 coiled-coil-helix-coiled-coil-helix domain containing 3 2 2
MIRT709074 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT709507 RHOH ras homolog family member H 2 2
MIRT709539 ZBED1 zinc finger BED-type containing 1 2 2
MIRT711774 RFXAP regulatory factor X associated protein 2 2
MIRT714309 ZNF454 zinc finger protein 454 2 2
MIRT719073 ACOX1 acyl-CoA oxidase 1 2 2
MIRT719105 PCYT1A phosphate cytidylyltransferase 1, choline, alpha 2 2
MIRT719420 B4GALNT3 beta-1,4-N-acetyl-galactosaminyltransferase 3 2 2
MIRT722311 DHCR24 24-dehydrocholesterol reductase 2 2
MIRT724552 HAUS2 HAUS augmin like complex subunit 2 2 2
MIRT737294 MYO18B myosin XVIIIB 2 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-520g Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-mir-520g Androstenedione+Letrozole resistant cell line (MCF-7)
hsa-miR-520g-3p Doxorubicin 31703 NSC123127 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-520g-3p Verapamil 2520 NSC272366 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-520g-3p Cisplatin 5460033 NSC119875 approved resistant High Germ Cell Tumor cell line (NTERA-2)
hsa-miR-520g-3p Cisplatin 5460033 NSC119875 approved resistant Low Epithelial Ovarian Cancer cell line (A2780)
hsa-miR-520g-3p Paclitaxel 36314 NSC125973 approved resistant Low Epithelial Ovarian Cancer cell line (A2780)
hsa-miR-520g-3p Trametinib 11707110 NSC758246 approved sensitive High Melanoma cell line (M14) (500nM)
hsa-miR-520g-3p Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (M14) (500nM)
hsa-miR-520g-3p Bortezomib 387447 NSC681239 approved sensitive Low Multiple Myeloma cell line (RPMI-8266, H929)
hsa-miR-520g-3p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-520g-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-520g-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-520g-3p Paclitaxel 36314 NSC125973 approved resistant cell line (HS578T)
hsa-miR-520g-3p Doxorubicin 31703 NSC123127 approved sensitive cell line (HS578T)
hsa-miR-520g-3p Ethanol+Tamoxifen sensitive cell line (LY2)
hsa-miR-520g-3p Sunitinib 5329102 NSC750690 approved resistant tissue (CardA)
hsa-miR-520g-3p Paclitaxel 36314 NSC125973 approved sensitive cell line (SKOV3)
hsa-miR-520g-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (T24)
hsa-miR-520g-3p Oxaliplatin 6857599 NSC266046 approved resistant cell line (IGROV-1)
hsa-miR-520g-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-520g-3p Cisplatin 5460033 NSC119875 approved resistant cell line (H460)
hsa-miR-520g-3p Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

Error report submission