pre-miRNA Information
pre-miRNA hsa-mir-4282   
Genomic Coordinates chr6: 72967687 - 72967753
Description Homo sapiens miR-4282 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4282
Sequence 40| UAAAAUUUGCAUCCAGGA |57
Evidence Experimental
Experiments SOLiD
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN32074657 13 COSMIC
COSN6331413 18 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1195771339 5 dbSNP
rs755058572 6 dbSNP
rs1245753664 11 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol KLHL11   
Synonyms -
Description kelch like family member 11
Transcript NM_018143   
Expression
Putative miRNA Targets on KLHL11
3'UTR of KLHL11
(miRNA target sites are highlighted)
>KLHL11|NM_018143|3'UTR
   1 GTTCTCTCAAGCGTGCCGATTAAAACTGTTACACCCGTTTCGTGAAGCTGAAGATACCCAGGCTGTTATTTAAAAAAGTA
  81 TGTCGATAACTTATTTTCTACATGAACTGATTATTACCCCATATAAAGGAAATAGAGTTAAAAACTAAAGAATGGGAGAC
 161 TCAGTTCAATACATGGTCATTTTGTTAGCTTGCAATTTTTGTCTTTGGTTTGTTTGTTTGTGCTAGCTAAATAAGATCTT
 241 ATTAAGGACAAGTGGAAAAATCAGGTGTAGTTGCTTAGCTGTTTTCCTGCCAACGAGTTATGACTCCTTTGTCTTGAGGA
 321 CTTACGTTTTGAACATGCTTTAAGCACCAATTTTATTTGCACATTTACTTTGATATTCTTTTTCATTTTTTATTAAATGA
 401 TTGGTTTTGGCAAGATCTGACTTCTGCATTGAGCCCTCATCTGCAGGAGGCATGTGCAATAGTGAGACTGAAATTTGAAT
 481 GAAAACACTCAATATTTCAGCAAGATAATTTGAGAATGTTTGCATTGATATTTTCTTATGTTTATCTAGAAATGCCAGTT
 561 TCCTTCCTAGAAGATGTGACTGATGAGAAATTTTTTACTGGCTCATGCATTTTTTGAATATTTTTCATTAGCAGCTGTTT
 641 ATAGACTTTAAGCCTTCAATCTGAGGTGACGGTAGTTGGCAAAAGTATAGATCTTTAGCTAATTGACTAAATACAGAGCA
 721 AGTTACATGTGTGAACTTTGTTTCTCTAAGAAGAAAAGTATTAGTGTAGACTGGGAAATCAAAGGCATTTAAAATTTTTT
 801 CAACATTTTTTTCAGGAGTTGCAGGATTATTTGAGGATATGTTAATGAGTGTAAATAATGCCTATGACAATCGACACTCA
 881 ATGCCTTCCATTTTAATTTTTGCTCTAATGCATATTATATAGAATCTTCATTATTCCTTTTCTCTTTTTTTTTTTTTTTT
 961 TGCTCATGTTGCCCAGGCTGGAGTGCAGTGGTGCAATCTCGGCTCACTGCAACCTCTGCCTGCCAGGTTCGAGTGATTCT
1041 CTTGCCTCAGCATCCCGAGTAGCTGGGATTACAGGTACCCACCATCACGCCTGGCTAATTTTTGTGCTTTTAGTAGAGAC
1121 AGGGTTTCACCATGTTGACCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATACGCCCGCCTCAGCCTCCCAAAGTGCTG
1201 GGATTACAGGCATGAGCCACCGTGCCCAGTCCATTATTCTTTTCTACAAGAAACTGTTTTTTTCCAAAATGGGAAGGAAG
1281 TCACAATTTAGAGAAATGTTGCTAAAGAGAAGCCTTATTATTTCTGATTGTTATATTTTATCCAGTTGCCCCACACTTTC
1361 AAACTTTGCCTGAGCCTAGGATACCAAATTTGGGTACATAATTTTGGCTTTTAAAGGTTTATGGGCTGGGCACGGTGGCT
1441 CATGACTGTAATCCCAACACTTTGGAGGAGGCTGAGGTGGGCAGATTTTGAGCCCAAGAGTTCAAGACCAGCCTGGGAAA
1521 CATAGCAAGATCCTGTCTCTACAAAAAGTAGAAAAATTAGCTGAGTGTGGTAGCTGGCACGTGCCTGTAGTCCTTCCTAC
1601 TTGAAGCCAAGGTGGGAGGATCACCAGAGCCTGGGAAGGTTGAGGCTGAAATGAGCTGTGATCATGCCACTCTACCTTGG
1681 GTGACAGAGAGACGGTGTCTCAAATAAAAATTAAAAAGATCACTGAAGCTATCTTTTATTTAGTTTTATACGTTATTCGA
1761 ATTATCTTATGTCTCCTGAGCTTTATAAAAGTTAGCACTCAAATTGACTTTTTTTTTTTTTTGGGCCAGGGGATGGGGTC
1841 CCACTTTGTCACCCAGGTTGGAGTACAGTGGTATGATCTCGGCTCACTACAACCTCCACCTCCTGGATGCAAGCCATCCT
1921 GCCACCTCAGCATACGGAGTAGCTGGGACTATGGGCACGCGCCACCACGCCCAGCTAATTTTTTTTTTGTATTTTTGGTA
2001 GAGATGGGGTTTCTCCATGTTGCCGAGGCTGGTCTCCAACTCCTGGGCTCAGGAGATCCACCCGTATCAGCCTCCCAGGG
2081 TGCTAGGATTAGGTGTGAGCCACCACGCCCGGCCTCAAAATAACTTTTTTTTTTTTTTTTGAAACAGTCACGCTTTGTCG
2161 CCCTGGCTGGAGTGCAGTTGCGCAGTCTCAGCTCACTGCAACCTCCACCTCCCGGGTTCATGTGATTCTCCTGCCTCAGC
2241 CTGCTGAGTAGCTGGGATTGCAGGTGTGTACCACCACGCCCGGCTAATTTTTGTATTTTTAATAGAGATGGGGTTTCACC
2321 ATGTTGGTTAGGCTGGTCTCGAACTCCTGACCTCGTGATCCGCCCACCTCAGCCTCTCAAAGCGCTGGGATTACAGGCAT
2401 GAGCCACCATGCCCAGCCCTCAAATTTACTCTTAATGCTCAGTTAATATAAAGGATTCCTAACAGTTTACAATGTGGTTT
2481 TCTTGTTTTTGTTGTTGTTTTGGTTTTTTAAGATGTGAGGTCTCACCTTATTGGCCAGGCTGGTCTCAAGCTCCTTTCCT
2561 CAAGCAATCCTCCCACCTTGGCCTCCCAAAGAGCCACCTGTCCAATGATTTATCCTGTTTCTTAAGAACTGTCTTTACCT
2641 TCTTAGACATTTTGTCATACCATTCTAGAAGTCAAATTCCAAGTGCAGTGATTTTTTTTTTCCCTAGTCCATTATAGTTA
2721 ATCTTCTTGTTAGTGATCAAATACCAAAAGAGAAAAGCACAACCAGAAATTTTGGCTATTTGCTGCAAGTTGTAGGTCTT
2801 GGGCTCTATACTAAGAACTTGAAATTTTTAAATTAGTATCCCTGCCTAGGTGAAAAGTTTTTAATAAATGTGTTGAAAAT
2881 CAACTTTAAATCCATTTAATTTAGACTGGAGTGGGCGTGAGAAACTGCAAGTCTATTTCTACATATAAGGATATATTATT
2961 ATATTGTCCCATCCCACCACTACCTTTTTCTCAATTTCTATTTCTTTGTAGTTATTTTAGTAAAAGCCATTTGGATTCTG
3041 AGAAGCACTAATTCTTAGCTGTGATAGGTCTATGCAAGTAAGACAGAATCATTAAATGAAGCTCACTAAATGAAGTTCTC
3121 ATTTCTCTCCAACAGACTGTGCTAGCAAACTTCGTTTTCTTGATTGTATTTAAATAATTTAGTATCTCACTACGATAATA
3201 GTTTTTAACTGGAAGGGTGTGATGTGTTTTTTGTTTTTTGTTCTCAGAGTTGTCTTCTGAGATAATTATTACCAAGTCAT
3281 TTGTGGGGTTGTGTTTTTTTCACATCATGTGACAGAAATTATAACTCATAAGATTTAGGCATAATCTGGTTTTAAAACCT
3361 TGATTGAAACTGTTGTTTTTTAACTTAGCAGGCAGCCTAGGCCATGGCTGAAAAGAAGGGGTAAGTCCTTCATTGCATGA
3441 TGATGTGTGCAGGTTTTCCTGATTTTCTAATTTTTATTTTTGAATTCACATGTGTAATTTCACATCAATAACTTGTGTTT
3521 CTGAAATATCCTAACTAACTTGTTAATAAGGAAAGAAACCAGATTTGCTTAAATCTGTTCAAGGCTGACATTCTGAAATT
3601 CTAAACTGGAAATAACTTCCCAGAGTATTTGGAAAGGTTCTAAGTACAAGGATCAGGCCTAAAATAGCTCCTTGGGAAAG
3681 AAATTTCCTTTTTGATGAGAAAACTTAAAATATTGTTTTTGGTAATGTAAGCAGTTAAAAACATGACTTTAGAAAGACAG
3761 CTTAATGCGTATTCAAGCAAACCTTTGTTTTGTTGCTTTTGCTTTTGTTTGTAGAAGAGAGAGGAAGTTATTATACCAAA
3841 AAGTAATAGTATATGTAACTTTGAGTGAGGCTACTTATATCTTAGAATGGGTATCCTTGAACTATATCTACCCCACCATG
3921 GCTTAAAAAAATCAGTGGTATATATTGAGAATGTCAGTCATGAGCTTAGTGTTTAAGTAACACATCCCACTTACAGTTGT
4001 TTGCATGATTAGTCTTGTGTATCATGATGTTCAACTTTGCTTTTGCTGTGCCAGTTCAAAAATATCTTTTTTGCTAAAAA
4081 CTCTTAAAATTCATGACATAAGTTTTGTTTTGATCACCCGGTTTTATATAGTATTTCTGGGACCAAAAAATTTAAATATA
4161 CCTTTTTAATATAAAACAGAAGTTTGAAGCTGGAAAGATAGTGTTTATGGAAGATTTGTGTGCTTTTGTGTTTTTTAAAC
4241 CCGTCAGGCTGCTGGTAAGGCAGTTTCTAGGGCTCACTTTTCCTCCTTACCTCTTGACTAGTGTAGCATGTGGTATGTTT
4321 AAAATATTTCATTTTCTGCTTTGTAATTCTAAAGTCAACACTATACTGTATGTAGACAGGAGAGCTGATTTGTATATTTT
4401 AGTTATTTGGTCTAATCAAGCATAACTAAAGGGACTTCTTTTTTGATACTTTTCTCAAATTAAGTTTAAATATAGTATAC
4481 GGGCCACATTTCATGTCTTTGAAAGTGTTGTACATTACTGTAAACCAAGTACTCTGTCTACACCAGAGGGTGCTTTAACT
4561 GCAAAATATTTGAGAAACAATTCAGTCTCTCAAACATTTTGGCACAGTTCATCACTCCAGTTTGTTACTTTCTTGAGAAT
4641 AGTCCATTTTTTGTTTTTGTTATTGTACCGTATGTTCTGGTCATTGGAAACAGAACAGCTCATAGTTGGGTGATGTAATA
4721 TAATAACAGTAATATAACCTAGTAGTCATTTTGCTTCAAGTAATTTAATTAGATAGCAAAATCACTGCGGTTTGTTTATT
4801 ACACTTGTAGGGCTTTTTATCTTACTCAGTGACCATCACTACGAATGTCTTACATTGAAGCACAGACTGCAGAGCACTTG
4881 TTAACTTAGTCCTCCTGCATAATGCACTCGTGAAAAGTAGTGCTTGCTAGGTGTTTGAAGATTTTATGATCCGTGTGCTT
4961 GGGCTCGTTGAGTTATTTGTAAAATAAACATTTAGTTTGAGTTGATGCAGTAAGTTTTTTGGACTAGTAGTATCCAGGTC
5041 CCTACTCTACTGAAAATATAATCTTCACTATCTCCCCTTAACTCAGAGGAGATGTAGCATTTAGAACACCTTGAGACATG
5121 ACATTGTAAAATAGCTTGTTTTATGTTCCTGAAGCTATCTTGTTCTCTGTTAAAGCTACTAATTGTCTCAGTGTAAGTTT
5201 TAAATAAACATATTTCTTTAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' agGACCUAC-GUUUAAAAu 5'
            || ||||  ||||||| 
Target 5' gaCT-GATGAGAAATTTTt 3'
578 - 595 151.00 -7.00
2
miRNA  3' agGAC-CUA--CGUUUAAAAu 5'
            ||| |:|  |||:||||| 
Target 5' ggCTGAGGTGGGCAGATTTTg 3'
1470 - 1490 142.00 -12.20
3
miRNA  3' agGACCUACGUUUAAAAu 5'
            ||  :||:||:|||| 
Target 5' gtCTCAGTGTAAGTTTTa 3'
5185 - 5202 140.00 -10.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26981678 12 COSMIC
COSN14448442 18 COSMIC
COSN28196079 18 COSMIC
COSN31605924 21 COSMIC
COSN30484117 41 COSMIC
COSN15323960 42 COSMIC
COSN30150648 50 COSMIC
COSN30163464 58 COSMIC
COSN30104266 61 COSMIC
COSN31600883 72 COSMIC
COSN26981677 77 COSMIC
COSN31586780 81 COSMIC
COSN30130184 84 COSMIC
COSN30474486 109 COSMIC
COSN28213841 173 COSMIC
rs11079018 4342 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1022561115 1 dbSNP
rs781809728 4 dbSNP
rs782143717 7 dbSNP
rs782658735 9 dbSNP
rs141272202 13 dbSNP
rs782701158 16 dbSNP
rs782167307 18 dbSNP
rs372525901 23 dbSNP
rs1308247225 26 dbSNP
rs1319094980 26 dbSNP
rs782178567 32 dbSNP
rs782441570 32 dbSNP
rs782529514 33 dbSNP
rs781853437 36 dbSNP
rs17498875 37 dbSNP
rs782117531 39 dbSNP
rs782684163 41 dbSNP
rs79313880 42 dbSNP
rs781877614 47 dbSNP
rs1457043779 52 dbSNP
rs1178859577 57 dbSNP
rs941398226 58 dbSNP
rs1421809594 69 dbSNP
rs889893562 72 dbSNP
rs34262423 78 dbSNP
rs1164046960 82 dbSNP
rs782337623 87 dbSNP
rs556843474 101 dbSNP
rs1328011155 102 dbSNP
rs782481584 113 dbSNP
rs922666870 113 dbSNP
rs781840609 116 dbSNP
rs1298941036 121 dbSNP
rs1376040133 123 dbSNP
rs1227000588 129 dbSNP
rs1312389428 130 dbSNP
rs1336122403 132 dbSNP
rs1235606936 136 dbSNP
rs1255676640 164 dbSNP
rs1316731641 170 dbSNP
rs782189986 171 dbSNP
rs781915829 174 dbSNP
rs782414683 176 dbSNP
rs1234225660 178 dbSNP
rs1482043446 184 dbSNP
rs1181081897 195 dbSNP
rs1256514577 202 dbSNP
rs989094310 207 dbSNP
rs1168434416 208 dbSNP
rs934602920 211 dbSNP
rs879983855 216 dbSNP
rs1421641910 222 dbSNP
rs925747067 231 dbSNP
rs1465144182 238 dbSNP
rs978582095 242 dbSNP
rs969886024 244 dbSNP
rs1356511025 245 dbSNP
rs782274078 250 dbSNP
rs992568573 254 dbSNP
rs782638057 260 dbSNP
rs1302636292 263 dbSNP
rs1356498943 265 dbSNP
rs1417225284 267 dbSNP
rs1276831534 276 dbSNP
rs1316798288 291 dbSNP
rs1274429045 293 dbSNP
rs550348219 294 dbSNP
rs1208984770 297 dbSNP
rs1280856098 300 dbSNP
rs1486518690 301 dbSNP
rs6503672 302 dbSNP
rs1187195521 305 dbSNP
rs1262429192 305 dbSNP
rs1475675057 305 dbSNP
rs1025985344 307 dbSNP
rs1421655108 321 dbSNP
rs782211586 325 dbSNP
rs1376492633 326 dbSNP
rs1436935557 333 dbSNP
rs1296693968 335 dbSNP
rs1340465120 340 dbSNP
rs961665623 346 dbSNP
rs1271499427 348 dbSNP
rs568215810 360 dbSNP
rs1364861766 367 dbSNP
rs546962370 369 dbSNP
rs1303655067 372 dbSNP
rs1005705848 376 dbSNP
rs1349554790 385 dbSNP
rs1214213418 392 dbSNP
rs782588517 394 dbSNP
rs1284968127 398 dbSNP
rs1447513948 404 dbSNP
rs1217854151 409 dbSNP
rs1243972272 415 dbSNP
rs889988429 422 dbSNP
rs527674478 424 dbSNP
rs1193287971 432 dbSNP
rs998273365 435 dbSNP
rs1395954820 456 dbSNP
rs1455708820 459 dbSNP
rs1157235348 462 dbSNP
rs1384693766 482 dbSNP
rs564790410 486 dbSNP
rs1401853923 488 dbSNP
rs1320820981 492 dbSNP
rs901134666 506 dbSNP
rs1053137684 519 dbSNP
rs1303432618 525 dbSNP
rs1372737221 527 dbSNP
rs1237426986 539 dbSNP
rs934548024 554 dbSNP
rs925872677 555 dbSNP
rs1225444465 557 dbSNP
rs1287607129 559 dbSNP
rs1450923617 564 dbSNP
rs1213170196 574 dbSNP
rs1253640967 575 dbSNP
rs551772872 577 dbSNP
rs187677114 581 dbSNP
rs1176986866 588 dbSNP
rs566903851 590 dbSNP
rs1470697623 601 dbSNP
rs948546439 605 dbSNP
rs551880559 607 dbSNP
rs1412287259 616 dbSNP
rs1461322757 616 dbSNP
rs1326008069 621 dbSNP
rs183928800 626 dbSNP
rs1444203842 633 dbSNP
rs915781793 637 dbSNP
rs992500025 647 dbSNP
rs1444153335 649 dbSNP
rs563138189 670 dbSNP
rs959827618 671 dbSNP
rs146548969 674 dbSNP
rs760928240 687 dbSNP
rs1233818877 688 dbSNP
rs1273953537 697 dbSNP
rs544435143 701 dbSNP
rs1337010543 709 dbSNP
rs918890952 716 dbSNP
rs1197027441 728 dbSNP
rs971775226 747 dbSNP
rs1438558686 748 dbSNP
rs782801526 764 dbSNP
rs1184440115 770 dbSNP
rs1017185765 790 dbSNP
rs1005841055 791 dbSNP
rs1475208203 796 dbSNP
rs529540418 805 dbSNP
rs954154224 812 dbSNP
rs1166273454 825 dbSNP
rs1419455019 836 dbSNP
rs1463580441 843 dbSNP
rs1166769233 861 dbSNP
rs1396797003 864 dbSNP
rs1028503065 870 dbSNP
rs998240793 873 dbSNP
rs901274803 874 dbSNP
rs1415373857 881 dbSNP
rs1295016920 887 dbSNP
rs1053634828 889 dbSNP
rs1338281815 914 dbSNP
rs1216896193 929 dbSNP
rs998852093 939 dbSNP
rs1340325104 944 dbSNP
rs904553910 946 dbSNP
rs1277026165 947 dbSNP
rs1485538447 961 dbSNP
rs1189323899 962 dbSNP
rs1373086125 962 dbSNP
rs1463253973 962 dbSNP
rs528439576 971 dbSNP
rs1374667555 976 dbSNP
rs192086570 979 dbSNP
rs948643742 988 dbSNP
rs540560651 993 dbSNP
rs372936738 996 dbSNP
rs938409055 1000 dbSNP
rs1327092857 1001 dbSNP
rs1229956324 1010 dbSNP
rs1273271946 1012 dbSNP
rs1347381611 1018 dbSNP
rs918996447 1025 dbSNP
rs559685796 1027 dbSNP
rs572484363 1031 dbSNP
rs1205055908 1053 dbSNP
rs1261879918 1056 dbSNP
rs1429742351 1057 dbSNP
rs963068664 1072 dbSNP
rs908918170 1077 dbSNP
rs186008885 1085 dbSNP
rs183198604 1086 dbSNP
rs1175283233 1087 dbSNP
rs1028470373 1088 dbSNP
rs1289356919 1089 dbSNP
rs976927706 1089 dbSNP
rs575207860 1092 dbSNP
rs1031746713 1094 dbSNP
rs1235213401 1103 dbSNP
rs557020786 1104 dbSNP
rs1306177362 1107 dbSNP
rs999381480 1110 dbSNP
rs1315481300 1113 dbSNP
rs1239008787 1114 dbSNP
rs1261856449 1121 dbSNP
rs190213014 1123 dbSNP
rs1487107768 1124 dbSNP
rs904481567 1128 dbSNP
rs1251759935 1129 dbSNP
rs1468691927 1132 dbSNP
rs1195095275 1133 dbSNP
rs5004986 1138 dbSNP
rs1021590456 1151 dbSNP
rs1159516781 1155 dbSNP
rs1365491260 1156 dbSNP
rs55861010 1161 dbSNP
rs55784751 1162 dbSNP
rs1012759832 1170 dbSNP
rs1162885640 1171 dbSNP
rs12945295 1174 dbSNP
rs1393823381 1174 dbSNP
rs1057002534 1175 dbSNP
rs938516766 1178 dbSNP
rs55999651 1179 dbSNP
rs1308076879 1195 dbSNP
rs55775937 1198 dbSNP
rs1319254541 1203 dbSNP
rs1231989850 1206 dbSNP
rs897687866 1222 dbSNP
rs1215224813 1226 dbSNP
rs1230854604 1227 dbSNP
rs1480081039 1233 dbSNP
rs541735675 1242 dbSNP
rs1252326578 1245 dbSNP
rs879959098 1247 dbSNP
rs1417296186 1251 dbSNP
rs1462060491 1253 dbSNP
rs1036110407 1256 dbSNP
rs1352990162 1258 dbSNP
rs1461608753 1263 dbSNP
rs1299165220 1264 dbSNP
rs941782611 1272 dbSNP
rs1413520811 1281 dbSNP
rs908849627 1285 dbSNP
rs1356621132 1291 dbSNP
rs1234622215 1304 dbSNP
rs767874876 1312 dbSNP
rs985810834 1329 dbSNP
rs1204775258 1334 dbSNP
rs1252914639 1340 dbSNP
rs931658710 1343 dbSNP
rs1186907980 1347 dbSNP
rs377221118 1348 dbSNP
rs1476112596 1349 dbSNP
rs1417453818 1354 dbSNP
rs114478495 1360 dbSNP
rs977441227 1362 dbSNP
rs534942318 1364 dbSNP
rs1356688801 1380 dbSNP
rs1433286308 1392 dbSNP
rs1312605018 1394 dbSNP
rs1032257550 1396 dbSNP
rs977502107 1432 dbSNP
rs570778006 1433 dbSNP
rs1021559300 1434 dbSNP
rs1214847544 1440 dbSNP
rs781860623 1448 dbSNP
rs551761654 1449 dbSNP
rs1012854021 1453 dbSNP
rs1345233088 1456 dbSNP
rs111618590 1457 dbSNP
rs1280693656 1459 dbSNP
rs372011743 1463 dbSNP
rs1213539570 1464 dbSNP
rs1240477688 1470 dbSNP
rs1485564941 1481 dbSNP
rs574178445 1484 dbSNP
rs782076845 1494 dbSNP
rs563915253 1495 dbSNP
rs1173414269 1500 dbSNP
rs1396065849 1510 dbSNP
rs1036617578 1523 dbSNP
rs1316820859 1525 dbSNP
rs941765570 1537 dbSNP
rs1344133030 1541 dbSNP
rs887506018 1554 dbSNP
rs1430851369 1560 dbSNP
rs769572037 1580 dbSNP
rs931626136 1581 dbSNP
rs922969152 1599 dbSNP
rs1233103270 1603 dbSNP
rs1303950734 1607 dbSNP
rs976989623 1609 dbSNP
rs1222041893 1618 dbSNP
rs944292461 1623 dbSNP
rs1447463647 1625 dbSNP
rs1216612041 1630 dbSNP
rs1249908240 1631 dbSNP
rs1467362441 1633 dbSNP
rs1193231491 1637 dbSNP
rs1254076715 1638 dbSNP
rs1479192160 1644 dbSNP
rs924776934 1655 dbSNP
rs1401728601 1670 dbSNP
rs1160828251 1672 dbSNP
rs1391631134 1690 dbSNP
rs1439764324 1691 dbSNP
rs1326126059 1693 dbSNP
rs529451184 1693 dbSNP
rs761622110 1694 dbSNP
rs1278679654 1704 dbSNP
rs1351321151 1709 dbSNP
rs782163882 1723 dbSNP
rs7216461 1725 dbSNP
rs1270159548 1751 dbSNP
rs914647972 1752 dbSNP
rs148927710 1758 dbSNP
rs1453482854 1759 dbSNP
rs528725723 1761 dbSNP
rs1180112006 1764 dbSNP
rs1232659477 1765 dbSNP
rs1470831539 1769 dbSNP
rs958696446 1792 dbSNP
rs1415070351 1795 dbSNP
rs1460491397 1798 dbSNP
rs578251412 1801 dbSNP
rs1164949792 1802 dbSNP
rs1392450038 1809 dbSNP
rs1002764446 1812 dbSNP
rs1407794361 1815 dbSNP
rs1328015770 1817 dbSNP
rs962287798 1820 dbSNP
rs1336115001 1821 dbSNP
rs564449861 1822 dbSNP
rs1232765681 1823 dbSNP
rs1273815703 1823 dbSNP
rs1291330431 1823 dbSNP
rs199666907 1823 dbSNP
rs1358820168 1824 dbSNP
rs1194283768 1825 dbSNP
rs1272799653 1828 dbSNP
rs545435170 1829 dbSNP
rs575240847 1831 dbSNP
rs1256045624 1842 dbSNP
rs1475135895 1844 dbSNP
rs1188055322 1847 dbSNP
rs1014865626 1849 dbSNP
rs1369697001 1849 dbSNP
rs1474258008 1856 dbSNP
rs1166937441 1876 dbSNP
rs1396997130 1880 dbSNP
rs1006044387 1885 dbSNP
rs1310798132 1894 dbSNP
rs1374776394 1899 dbSNP
rs1415316625 1916 dbSNP
rs887641844 1925 dbSNP
rs7216097 1936 dbSNP
rs1225567022 1937 dbSNP
rs1269858856 1942 dbSNP
rs1231096543 1947 dbSNP
rs1278552467 1950 dbSNP
rs1485671771 1957 dbSNP
rs1212213159 1958 dbSNP
rs995926586 1959 dbSNP
rs541941280 1960 dbSNP
rs1191796951 1965 dbSNP
rs1373313964 1968 dbSNP
rs574660806 1969 dbSNP
rs1171596727 1987 dbSNP
rs1040459537 1989 dbSNP
rs1394237362 1989 dbSNP
rs1435318574 1989 dbSNP
rs944282691 1991 dbSNP
rs924840947 1998 dbSNP
rs1042003155 2001 dbSNP
rs535310560 2004 dbSNP
rs1366210872 2008 dbSNP
rs376369617 2016 dbSNP
rs1230883202 2017 dbSNP
rs553173360 2024 dbSNP
rs1347587673 2025 dbSNP
rs534822960 2043 dbSNP
rs1258321543 2049 dbSNP
rs991494218 2053 dbSNP
rs1349105438 2062 dbSNP
rs1204051983 2063 dbSNP
rs1261810701 2064 dbSNP
rs371904918 2066 dbSNP
rs958790519 2081 dbSNP
rs928629593 2093 dbSNP
rs1191334801 2097 dbSNP
rs981830474 2098 dbSNP
rs1177902599 2103 dbSNP
rs962097584 2107 dbSNP
rs577165660 2110 dbSNP
rs1158139105 2117 dbSNP
rs1389458231 2125 dbSNP
rs1437613904 2132 dbSNP
rs1324099643 2138 dbSNP
rs1238942383 2141 dbSNP
rs1268265269 2141 dbSNP
rs782423316 2141 dbSNP
rs1330566233 2149 dbSNP
rs558941810 2151 dbSNP
rs1468595936 2152 dbSNP
rs1192708492 2158 dbSNP
rs539443574 2160 dbSNP
rs1248148770 2169 dbSNP
rs1418494796 2175 dbSNP
rs1182413289 2181 dbSNP
rs1006180044 2182 dbSNP
rs1458915320 2184 dbSNP
rs951818447 2194 dbSNP
rs1028836270 2195 dbSNP
rs995895429 2199 dbSNP
rs901609238 2204 dbSNP
rs1458545663 2205 dbSNP
rs569269798 2207 dbSNP
rs1040151505 2213 dbSNP
rs999585920 2214 dbSNP
rs1371600919 2220 dbSNP
rs1391362840 2225 dbSNP
rs1289557825 2228 dbSNP
rs782240185 2231 dbSNP
rs1230933762 2233 dbSNP
rs902212425 2243 dbSNP
rs1322016629 2270 dbSNP
rs1041950427 2274 dbSNP
rs1223298156 2277 dbSNP
rs1249455791 2278 dbSNP
rs1480171911 2279 dbSNP
rs947644287 2281 dbSNP
rs1253918849 2282 dbSNP
rs550777126 2287 dbSNP
rs1474152929 2293 dbSNP
rs1185906206 2327 dbSNP
rs535915529 2332 dbSNP
rs568231501 2340 dbSNP
rs1417232663 2341 dbSNP
rs1424663628 2344 dbSNP
rs1167139448 2346 dbSNP
rs1352940116 2347 dbSNP
rs1461813376 2348 dbSNP
rs546749515 2352 dbSNP
rs1308950034 2355 dbSNP
rs1372948331 2356 dbSNP
rs1413466043 2361 dbSNP
rs914708696 2362 dbSNP
rs746748491 2367 dbSNP
rs528664617 2376 dbSNP
rs937534606 2380 dbSNP
rs928696433 2383 dbSNP
rs1228886176 2384 dbSNP
rs1276428943 2385 dbSNP
rs781956641 2388 dbSNP
rs1210042878 2394 dbSNP
rs537017102 2398 dbSNP
rs1483637688 2406 dbSNP
rs1183624082 2412 dbSNP
rs1417649775 2417 dbSNP
rs780070885 2418 dbSNP
rs1169695502 2423 dbSNP
rs149848082 2429 dbSNP
rs1433458708 2451 dbSNP
rs1173531992 2457 dbSNP
rs1360214472 2459 dbSNP
rs1449613275 2464 dbSNP
rs185549300 2469 dbSNP
rs1360844394 2473 dbSNP
rs984669957 2493 dbSNP
rs1435359605 2500 dbSNP
rs1299609202 2511 dbSNP
rs951953324 2519 dbSNP
rs1233241875 2520 dbSNP
rs1279272845 2521 dbSNP
rs1313820788 2523 dbSNP
rs1212338671 2526 dbSNP
rs782322275 2530 dbSNP
rs1240422952 2542 dbSNP
rs1464658637 2543 dbSNP
rs782187299 2553 dbSNP
rs1028808647 2567 dbSNP
rs1189433333 2585 dbSNP
rs1250338724 2587 dbSNP
rs374447891 2589 dbSNP
rs1172313956 2591 dbSNP
rs1426501212 2598 dbSNP
rs1416592052 2601 dbSNP
rs1156400724 2603 dbSNP
rs35014758 2605 dbSNP
rs1019104870 2622 dbSNP
rs4796722 2627 dbSNP
rs902137465 2633 dbSNP
rs1322171219 2634 dbSNP
rs1368274006 2656 dbSNP
rs1021925534 2660 dbSNP
rs1439911155 2665 dbSNP
rs1275148739 2680 dbSNP
rs1369721964 2688 dbSNP
rs114676860 2691 dbSNP
rs893370576 2701 dbSNP
rs1209395027 2702 dbSNP
rs1328540222 2702 dbSNP
rs1270276806 2704 dbSNP
rs373628980 2711 dbSNP
rs1467268892 2717 dbSNP
rs868950510 2720 dbSNP
rs1247655356 2722 dbSNP
rs1479324970 2723 dbSNP
rs1175957157 2729 dbSNP
rs1472643604 2729 dbSNP
rs181284484 2740 dbSNP
rs1391845091 2742 dbSNP
rs1460590110 2744 dbSNP
rs189341450 2752 dbSNP
rs1351382078 2764 dbSNP
rs370517497 2770 dbSNP
rs1439984598 2775 dbSNP
rs559495606 2778 dbSNP
rs1046190897 2790 dbSNP
rs1278921171 2796 dbSNP
rs1350982387 2800 dbSNP
rs1229103228 2805 dbSNP
rs940791619 2808 dbSNP
rs1290223524 2825 dbSNP
rs907845735 2832 dbSNP
rs1333056523 2843 dbSNP
rs1209454724 2867 dbSNP
rs984805911 2870 dbSNP
rs1291103894 2872 dbSNP
rs1453713155 2883 dbSNP
rs1202803387 2907 dbSNP
rs1251740845 2912 dbSNP
rs1473164386 2915 dbSNP
rs930655896 2916 dbSNP
rs921834873 2917 dbSNP
rs1472288875 2930 dbSNP
rs1163443893 2931 dbSNP
rs974694437 2933 dbSNP
rs1408024854 2935 dbSNP
rs1307119162 2943 dbSNP
rs966271423 2945 dbSNP
rs1371093015 2950 dbSNP
rs1411585045 2955 dbSNP
rs1310001509 2958 dbSNP
rs1353621814 2961 dbSNP
rs1244103683 2967 dbSNP
rs1285023654 2979 dbSNP
rs552928334 2981 dbSNP
rs541227137 2992 dbSNP
rs1358662365 3000 dbSNP
rs1213181347 3008 dbSNP
rs1274364224 3013 dbSNP
rs1207890781 3015 dbSNP
rs1254826470 3018 dbSNP
rs1441369347 3027 dbSNP
rs1187580135 3044 dbSNP
rs1238856467 3045 dbSNP
rs1018782939 3048 dbSNP
rs1474184482 3050 dbSNP
rs978211456 3063 dbSNP
rs1390551494 3064 dbSNP
rs782632547 3070 dbSNP
rs376476255 3072 dbSNP
rs1010514001 3082 dbSNP
rs894848609 3084 dbSNP
rs536052522 3088 dbSNP
rs558560080 3092 dbSNP
rs1395537012 3093 dbSNP
rs1334836143 3094 dbSNP
rs1342555114 3114 dbSNP
rs1433152941 3120 dbSNP
rs1297388270 3126 dbSNP
rs1034561249 3138 dbSNP
rs1278843493 3139 dbSNP
rs782811206 3145 dbSNP
rs782503049 3154 dbSNP
rs1257656080 3164 dbSNP
rs1444987015 3171 dbSNP
rs1248457720 3189 dbSNP
rs907327863 3191 dbSNP
rs536000318 3193 dbSNP
rs576281295 3194 dbSNP
rs1173292700 3195 dbSNP
rs1404414269 3199 dbSNP
rs1455879586 3202 dbSNP
rs1320176787 3217 dbSNP
rs1366144796 3217 dbSNP
rs1437744806 3222 dbSNP
rs1299562294 3223 dbSNP
rs1331103152 3226 dbSNP
rs1234591456 3233 dbSNP
rs1257301385 3236 dbSNP
rs1347886236 3240 dbSNP
rs1207511364 3255 dbSNP
rs940746225 3263 dbSNP
rs186015263 3279 dbSNP
rs1465920672 3287 dbSNP
rs1211655202 3288 dbSNP
rs1266389537 3293 dbSNP
rs1200874651 3301 dbSNP
rs1433749565 3301 dbSNP
rs1361951450 3306 dbSNP
rs1471663449 3309 dbSNP
rs535491628 3318 dbSNP
rs568169013 3323 dbSNP
rs1389667410 3337 dbSNP
rs1459017846 3342 dbSNP
rs1292207337 3348 dbSNP
rs1390441926 3348 dbSNP
rs782587665 3349 dbSNP
rs1304094903 3360 dbSNP
rs1349106231 3362 dbSNP
rs1227248431 3363 dbSNP
rs373822780 3364 dbSNP
rs1330841721 3370 dbSNP
rs781993043 3374 dbSNP
rs921969781 3404 dbSNP
rs553098454 3407 dbSNP
rs534877974 3417 dbSNP
rs34227257 3422 dbSNP
rs944648548 3429 dbSNP
rs182322087 3440 dbSNP
rs1482651141 3441 dbSNP
rs911687105 3445 dbSNP
rs782427099 3447 dbSNP
rs1181635888 3451 dbSNP
rs1412780692 3481 dbSNP
rs1162913762 3490 dbSNP
rs1368077896 3502 dbSNP
rs781901294 3508 dbSNP
rs1295582690 3512 dbSNP
rs1369315438 3518 dbSNP
rs1409732485 3532 dbSNP
rs1308158616 3554 dbSNP
rs1351764817 3573 dbSNP
rs966543972 3576 dbSNP
rs1226079073 3579 dbSNP
rs1311596743 3595 dbSNP
rs782794234 3598 dbSNP
rs1321885009 3601 dbSNP
rs1246726792 3607 dbSNP
rs1272207142 3612 dbSNP
rs1341439744 3619 dbSNP
rs1205759289 3623 dbSNP
rs1252682716 3635 dbSNP
rs1481679376 3640 dbSNP
rs782130829 3641 dbSNP
rs1180143908 3644 dbSNP
rs989229013 3646 dbSNP
rs1255738805 3647 dbSNP
rs958990691 3651 dbSNP
rs1167416809 3658 dbSNP
rs1033312124 3671 dbSNP
rs1388679903 3673 dbSNP
rs1002161785 3680 dbSNP
rs1429715754 3703 dbSNP
rs140939198 3704 dbSNP
rs6503671 3713 dbSNP
rs1445191639 3726 dbSNP
rs570267019 3729 dbSNP
rs1301683999 3735 dbSNP
rs1379530338 3756 dbSNP
rs1005040020 3765 dbSNP
rs1397405096 3769 dbSNP
rs1295194364 3771 dbSNP
rs886642513 3773 dbSNP
rs1364160561 3779 dbSNP
rs782735720 3780 dbSNP
rs1228821209 3788 dbSNP
rs1276719161 3792 dbSNP
rs1310311172 3795 dbSNP
rs1208188235 3797 dbSNP
rs994928005 3801 dbSNP
rs1185617848 3804 dbSNP
rs1246378807 3811 dbSNP
rs900470130 3819 dbSNP
rs1189546585 3833 dbSNP
rs1392569727 3834 dbSNP
rs1413264503 3838 dbSNP
rs1039047870 3842 dbSNP
rs782637427 3855 dbSNP
rs1174817764 3856 dbSNP
rs1359214828 3863 dbSNP
rs944598381 3874 dbSNP
rs1318171400 3877 dbSNP
rs1363954242 3878 dbSNP
rs190485755 3880 dbSNP
rs1299468424 3881 dbSNP
rs1365473213 3890 dbSNP
rs1218547798 3909 dbSNP
rs529764522 3912 dbSNP
rs544927081 3914 dbSNP
rs1205587740 3915 dbSNP
rs1266484169 3917 dbSNP
rs1464558326 3918 dbSNP
rs1209825172 3931 dbSNP
rs1244183498 3931 dbSNP
rs1477354773 3932 dbSNP
rs1191093598 3936 dbSNP
rs1426443733 3938 dbSNP
rs1481146989 3965 dbSNP
rs781920295 3969 dbSNP
rs1156249719 3970 dbSNP
rs1387462620 3981 dbSNP
rs1457427978 3989 dbSNP
rs915078260 3990 dbSNP
rs184311312 3994 dbSNP
rs1435438317 4002 dbSNP
rs1294065213 4005 dbSNP
rs1369567272 4006 dbSNP
rs147292302 4007 dbSNP
rs868916245 4018 dbSNP
rs1286525506 4034 dbSNP
rs551422904 4040 dbSNP
rs1229221233 4043 dbSNP
rs1286831726 4051 dbSNP
rs1450274265 4052 dbSNP
rs368017358 4064 dbSNP
rs374110167 4065 dbSNP
rs371654380 4066 dbSNP
rs1247819104 4072 dbSNP
rs199737901 4073 dbSNP
rs543268140 4074 dbSNP
rs1410550706 4090 dbSNP
rs1472735989 4091 dbSNP
rs144311899 4092 dbSNP
rs1411116717 4100 dbSNP
rs1404564241 4112 dbSNP
rs1323891428 4113 dbSNP
rs1351613227 4117 dbSNP
rs782603205 4119 dbSNP
rs1024553355 4120 dbSNP
rs1349916800 4128 dbSNP
rs1410474286 4145 dbSNP
rs1005588575 4149 dbSNP
rs140358950 4150 dbSNP
rs1354442997 4158 dbSNP
rs1228118070 4165 dbSNP
rs1362278136 4168 dbSNP
rs35447856 4168 dbSNP
rs1203587572 4172 dbSNP
rs1251673878 4173 dbSNP
rs1483107882 4183 dbSNP
rs1027833624 4198 dbSNP
rs1183274408 4200 dbSNP
rs1235386863 4212 dbSNP
rs541818372 4215 dbSNP
rs994893891 4226 dbSNP
rs1472258453 4237 dbSNP
rs1163682341 4242 dbSNP
rs782173238 4243 dbSNP
rs200432930 4248 dbSNP
rs1167918561 4253 dbSNP
rs1371038561 4256 dbSNP
rs1039553010 4270 dbSNP
rs1410620433 4282 dbSNP
rs1330904248 4294 dbSNP
rs1338999807 4295 dbSNP
rs1447562351 4298 dbSNP
rs1285194173 4300 dbSNP
rs797040801 4312 dbSNP
rs868992185 4313 dbSNP
rs549349908 4336 dbSNP
rs11079018 4342 dbSNP
rs1274566765 4343 dbSNP
rs1343412149 4350 dbSNP
rs11653094 4353 dbSNP
rs1042268490 4363 dbSNP
rs761383109 4368 dbSNP
rs1244559399 4371 dbSNP
rs150533891 4377 dbSNP
rs1187636832 4378 dbSNP
rs559069976 4394 dbSNP
rs1463461943 4399 dbSNP
rs1169788296 4424 dbSNP
rs141654993 4432 dbSNP
rs1413934665 4433 dbSNP
rs1337661291 4443 dbSNP
rs937868535 4448 dbSNP
rs1408494315 4449 dbSNP
rs1297312380 4464 dbSNP
rs1433353517 4464 dbSNP
rs926378168 4465 dbSNP
rs1230232088 4475 dbSNP
rs1272613561 4477 dbSNP
rs537254298 4480 dbSNP
rs1200484641 4481 dbSNP
rs148397441 4481 dbSNP
rs1463220506 4497 dbSNP
rs908210395 4505 dbSNP
rs1248400160 4514 dbSNP
rs544054381 4528 dbSNP
rs950957935 4532 dbSNP
rs1376945764 4541 dbSNP
rs1027801241 4543 dbSNP
rs1177158608 4555 dbSNP
rs1431802665 4560 dbSNP
rs1455830050 4562 dbSNP
rs973550612 4564 dbSNP
rs782485356 4566 dbSNP
rs1320361535 4569 dbSNP
rs1386092647 4570 dbSNP
rs1384235350 4580 dbSNP
rs1322173849 4587 dbSNP
rs1330972785 4592 dbSNP
rs548645312 4595 dbSNP
rs1223601071 4596 dbSNP
rs1009398940 4607 dbSNP
rs1326713783 4615 dbSNP
rs1227377330 4619 dbSNP
rs1268322459 4623 dbSNP
rs890428037 4637 dbSNP
rs781808632 4640 dbSNP
rs1207783280 4653 dbSNP
rs9896025 4665 dbSNP
rs1452102135 4669 dbSNP
rs1009413186 4670 dbSNP
rs1431513077 4673 dbSNP
rs1471756566 4676 dbSNP
rs1158747038 4699 dbSNP
rs1364552238 4700 dbSNP
rs1455687797 4701 dbSNP
rs1161757485 4705 dbSNP
rs1390732766 4717 dbSNP
rs1406079265 4719 dbSNP
rs1304485693 4720 dbSNP
rs1348057363 4727 dbSNP
rs1408631587 4729 dbSNP
rs1307274166 4730 dbSNP
rs893704407 4738 dbSNP
rs1053656641 4744 dbSNP
rs1360133890 4745 dbSNP
rs937840577 4762 dbSNP
rs1224588954 4764 dbSNP
rs1249480980 4774 dbSNP
rs905066306 4779 dbSNP
rs565710040 4784 dbSNP
rs111942712 4788 dbSNP
rs1251524405 4793 dbSNP
rs760533408 4794 dbSNP
rs1421106060 4797 dbSNP
rs949169104 4802 dbSNP
rs4796616 4819 dbSNP
rs75914986 4834 dbSNP
rs1425897761 4835 dbSNP
rs930991509 4843 dbSNP
rs1369181468 4848 dbSNP
rs920835602 4849 dbSNP
rs1428540561 4858 dbSNP
rs1298244442 4860 dbSNP
rs1375147282 4870 dbSNP
rs574282799 4881 dbSNP
rs1311791974 4888 dbSNP
rs1383297664 4892 dbSNP
rs1247834722 4893 dbSNP
rs1272408413 4899 dbSNP
rs1341292080 4907 dbSNP
rs1204000721 4909 dbSNP
rs1251955378 4910 dbSNP
rs1180307653 4922 dbSNP
rs1481771940 4922 dbSNP
rs1255690209 4926 dbSNP
rs1445629183 4933 dbSNP
rs782122431 4949 dbSNP
rs531452271 4952 dbSNP
rs1449377318 4953 dbSNP
rs1170591740 4958 dbSNP
rs1355740140 4965 dbSNP
rs1464069768 4966 dbSNP
rs561227043 4967 dbSNP
rs1406282245 4975 dbSNP
rs1454383022 4976 dbSNP
rs1295126920 4985 dbSNP
rs542546881 4989 dbSNP
rs1364446912 4997 dbSNP
rs574470090 5008 dbSNP
rs1296439870 5010 dbSNP
rs8066947 5011 dbSNP
rs1208033446 5021 dbSNP
rs1021016269 5038 dbSNP
rs77331851 5041 dbSNP
rs1461935501 5053 dbSNP
rs782351568 5057 dbSNP
rs1246547857 5058 dbSNP
rs1485849519 5059 dbSNP
rs1187647457 5067 dbSNP
rs1422210731 5070 dbSNP
rs1430965197 5072 dbSNP
rs1174668275 5077 dbSNP
rs1429640267 5081 dbSNP
rs4796615 5082 dbSNP
rs1318353052 5083 dbSNP
rs1387600312 5090 dbSNP
rs1431148667 5092 dbSNP
rs958064766 5097 dbSNP
rs1290589283 5098 dbSNP
rs774251602 5104 dbSNP
rs1365317528 5107 dbSNP
rs1044777 5108 dbSNP
rs1217607733 5114 dbSNP
rs1282708883 5138 dbSNP
rs781912184 5148 dbSNP
rs782429945 5153 dbSNP
rs782269338 5157 dbSNP
rs1266427950 5165 dbSNP
rs1316719519 5181 dbSNP
rs904993136 5187 dbSNP
rs1046675185 5190 dbSNP
rs1216879768 5200 dbSNP
rs1013312454 5210 dbSNP
rs1487790164 5214 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545212. RNA binding protein: AGO1. Condition:Control PAR-CLIP data was present in GSM545214. RNA binding protein: AGO3. Condition:Control PAR-CLIP data was present in GSM545217. RNA binding protein: AGO2. Condition:miR-7 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 55175.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714645. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 3 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 55175.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065668. RNA binding protein: AGO1. Condition:4-thiouridine "PAR-CLIP data was present in GSM1065669. RNA binding protein: AGO1. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
Experimental Support 4 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM545212
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / Control
Location of target site ENST00000319121.3 | 3UTR | CACCAAUUUUAUUUGCACAUUUACUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM545214
Method / RBP PAR-CLIP / AGO3
Cell line / Condition HEK293 / Control
Location of target site ENST00000319121.3 | 3UTR | CACCAAUUUUAUUUGCACAUUUACUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM545217
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-7 transfection
Location of target site ENST00000319121.3 | 3UTR | CUUUAAGCACCAAUUUUAUUUGCACAUUUAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM714645
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000319121.3 | 3UTR | CACCAAUUUUAUUUGCACAUUUACUUUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM1065668
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_7
Location of target site ENST00000319121.3 | 3UTR | CACCAAUUUUAUUUGCACAUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM1065669
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_8
Location of target site ENST00000319121.3 | 3UTR | CACCAAUUUUAUUUGCACAUUUACUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000319121.3 | 3UTR | CACCAAUUUUAUUUGCACAUUUACUUUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
280 hsa-miR-4282 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057628 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT060732 RPS3 ribosomal protein S3 2 2
MIRT063371 ETNK1 ethanolamine kinase 1 2 2
MIRT066257 LRIG3 leucine rich repeats and immunoglobulin like domains 3 2 4
MIRT070774 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT070871 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 4
MIRT078056 PCTP phosphatidylcholine transfer protein 2 2
MIRT078408 DCAF7 DDB1 and CUL4 associated factor 7 2 4
MIRT084059 PPP1R3D protein phosphatase 1 regulatory subunit 3D 2 2
MIRT093537 GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 2 6
MIRT096072 SFXN1 sideroflexin 1 2 2
MIRT098316 REV3L REV3 like, DNA directed polymerase zeta catalytic subunit 2 2
MIRT100493 UHRF1BP1 UHRF1 binding protein 1 2 2
MIRT102254 HBP1 HMG-box transcription factor 1 2 4
MIRT105318 VPS37A VPS37A, ESCRT-I subunit 2 2
MIRT114143 MZT1 mitotic spindle organizing protein 1 2 4
MIRT114873 DICER1 dicer 1, ribonuclease III 2 2
MIRT134683 PNRC2 proline rich nuclear receptor coactivator 2 2 2
MIRT137640 RCOR1 REST corepressor 1 2 2
MIRT155449 CCNT2 cyclin T2 2 4
MIRT165656 DCTN4 dynactin subunit 4 2 2
MIRT177570 CSTF2T cleavage stimulation factor subunit 2 tau variant 2 4
MIRT188514 E2F7 E2F transcription factor 7 2 10
MIRT193019 TMOD3 tropomodulin 3 2 4
MIRT195823 GADD45A growth arrest and DNA damage inducible alpha 2 2
MIRT195885 DEPDC1 DEP domain containing 1 2 6
MIRT206029 NUP50 nucleoporin 50 2 6
MIRT212148 CLCN3 chloride voltage-gated channel 3 2 2
MIRT213999 DCP2 decapping mRNA 2 2 2
MIRT214650 HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 2 2
MIRT221568 CBX3 chromobox 3 2 2
MIRT224544 ZNF623 zinc finger protein 623 2 2
MIRT227654 SET SET nuclear proto-oncogene 2 2
MIRT229992 CHIC1 cysteine rich hydrophobic domain 1 2 2
MIRT238968 QKI QKI, KH domain containing RNA binding 2 2
MIRT239825 ACTB actin beta 2 2
MIRT241084 ZXDA zinc finger, X-linked, duplicated A 2 4
MIRT244852 ZBTB5 zinc finger and BTB domain containing 5 2 2
MIRT264534 TARDBP TAR DNA binding protein 2 2
MIRT271438 SKI SKI proto-oncogene 2 2
MIRT271597 ENAH ENAH, actin regulator 2 2
MIRT294332 ZNF264 zinc finger protein 264 2 2
MIRT296341 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT301715 TEF TEF, PAR bZIP transcription factor 2 2
MIRT308549 ZNF654 zinc finger protein 654 2 2
MIRT313866 DEPDC1B DEP domain containing 1B 2 2
MIRT315529 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT321066 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT343777 NUTF2 nuclear transport factor 2 2 2
MIRT359109 MAP1B microtubule associated protein 1B 2 2
MIRT397393 GOLGA3 golgin A3 2 4
MIRT400822 CPEB2 cytoplasmic polyadenylation element binding protein 2 2 2
MIRT442171 DSEL dermatan sulfate epimerase-like 2 2
MIRT442777 JAG1 jagged 1 2 2
MIRT442862 SCARF1 scavenger receptor class F member 1 2 4
MIRT442919 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 2 2
MIRT444567 TRA2B transformer 2 beta homolog 2 2
MIRT444718 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT445018 RBMS3 RNA binding motif single stranded interacting protein 3 2 2
MIRT445853 LRRC1 leucine rich repeat containing 1 2 2
MIRT446242 HELZ helicase with zinc finger 2 2
MIRT446542 GOLGA8B golgin A8 family member B 2 2
MIRT446643 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT446948 ZMAT3 zinc finger matrin-type 3 2 4
MIRT447061 KCNAB1 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 2 2
MIRT447327 ZSCAN21 zinc finger and SCAN domain containing 21 2 2
MIRT447995 CDX1 caudal type homeobox 1 2 2
MIRT448543 RHEBP1 RHEB pseudogene 1 2 6
MIRT448752 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT448772 GOLGA8A golgin A8 family member A 2 2
MIRT449342 WDR26 WD repeat domain 26 2 2
MIRT450011 SLC16A6 solute carrier family 16 member 6 2 4
MIRT450229 PCNX pecanex homolog 1 2 2
MIRT450340 MRPL17 mitochondrial ribosomal protein L17 2 4
MIRT450381 MSI2 musashi RNA binding protein 2 2 2
MIRT450759 PGGT1B protein geranylgeranyltransferase type I subunit beta 2 2
MIRT450809 NRCAM neuronal cell adhesion molecule 2 2
MIRT450947 ATAD2 ATPase family, AAA domain containing 2 2 2
MIRT459095 CCPG1 cell cycle progression 1 2 2
MIRT462428 TWISTNB TWIST neighbor 2 2
MIRT465200 TROVE2 TROVE domain family member 2 2 4
MIRT467382 SON SON DNA binding protein 2 4
MIRT468546 SERP1 stress associated endoplasmic reticulum protein 1 2 2
MIRT471506 PDE4D phosphodiesterase 4D 2 2
MIRT471981 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT474478 KLHL11 kelch like family member 11 2 8
MIRT475011 KANSL1 KAT8 regulatory NSL complex subunit 1 2 8
MIRT480341 C5orf51 chromosome 5 open reading frame 51 2 2
MIRT482696 TEX9 testis expressed 9 2 6
MIRT483462 YTHDF1 YTH N6-methyladenosine RNA binding protein 1 2 6
MIRT485623 FAM217B family with sequence similarity 217 member B 2 2
MIRT485714 CASP16 caspase 16, pseudogene 2 8
MIRT486279 SEC23A Sec23 homolog A, coat complex II component 2 2
MIRT491000 PEBP1 phosphatidylethanolamine binding protein 1 2 4
MIRT492594 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT493365 KIF5B kinesin family member 5B 2 2
MIRT494316 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT495208 EDN3 endothelin 3 2 2
MIRT497011 TCF15 transcription factor 15 2 2
MIRT498512 FRK fyn related Src family tyrosine kinase 2 2
MIRT498778 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT501045 SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase 2 6
MIRT502939 CDC37L1 cell division cycle 37 like 1 2 8
MIRT504806 VHL von Hippel-Lindau tumor suppressor 2 6
MIRT505656 SHMT1 serine hydroxymethyltransferase 1 2 6
MIRT505964 RAB5C RAB5C, member RAS oncogene family 2 6
MIRT506322 OTUD4 OTU deubiquitinase 4 2 4
MIRT506803 KLHL15 kelch like family member 15 2 6
MIRT506917 KBTBD8 kelch repeat and BTB domain containing 8 2 4
MIRT507400 EMC7 ER membrane protein complex subunit 7 2 8
MIRT507471 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 6
MIRT508058 ATP13A3 ATPase 13A3 2 4
MIRT508135 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT509895 RPS23 ribosomal protein S23 2 4
MIRT510881 RAN RAN, member RAS oncogene family 2 8
MIRT513766 PEX5L peroxisomal biogenesis factor 5 like 2 4
MIRT516898 COPS8 COP9 signalosome subunit 8 2 2
MIRT518703 TIMD4 T-cell immunoglobulin and mucin domain containing 4 2 4
MIRT520429 TTPAL alpha tocopherol transfer protein like 2 6
MIRT521843 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT522116 NUDT3 nudix hydrolase 3 2 4
MIRT525467 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT525583 MTRNR2L7 MT-RNR2-like 7 2 2
MIRT525906 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT526072 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT526232 MTRNR2L5 MT-RNR2-like 5 2 4
MIRT526455 FAM71F2 family with sequence similarity 71 member F2 2 4
MIRT526515 POU5F1B POU class 5 homeobox 1B 2 2
MIRT528032 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT528422 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT528995 ISLR2 immunoglobulin superfamily containing leucine rich repeat 2 2 4
MIRT529311 ATRNL1 attractin like 1 2 2
MIRT529376 SKP1 S-phase kinase associated protein 1 2 4
MIRT530015 SRRM1 serine and arginine repetitive matrix 1 2 2
MIRT530089 FMN2 formin 2 2 2
MIRT530942 ENPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 2 2
MIRT531229 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT533088 YTHDF3 YTH N6-methyladenosine RNA binding protein 3 2 2
MIRT533299 USP46 ubiquitin specific peptidase 46 2 2
MIRT533318 UNKL unkempt family like zinc finger 2 2
MIRT533721 TMEM30A transmembrane protein 30A 2 2
MIRT534096 AZF1 azoospermia factor 1 2 2
MIRT534188 SLC7A11 solute carrier family 7 member 11 2 2
MIRT534493 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT536077 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT536242 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT537524 FAM104A family with sequence similarity 104 member A 2 2
MIRT538088 DGKH diacylglycerol kinase eta 2 2
MIRT538475 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT538853 BTG1 BTG anti-proliferation factor 1 2 4
MIRT539075 GDNF glial cell derived neurotrophic factor 2 2
MIRT539480 ACVR2B activin A receptor type 2B 2 4
MIRT540210 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT541940 TSPAN2 tetraspanin 2 2 2
MIRT543812 COCH cochlin 2 2
MIRT545120 PDZRN4 PDZ domain containing ring finger 4 2 2
MIRT545571 GIMAP4 GTPase, IMAP family member 4 2 2
MIRT545989 XKR4 XK related 4 2 2
MIRT547213 PANK3 pantothenate kinase 3 2 4
MIRT547740 KIAA1468 KIAA1468 2 2
MIRT548022 GRB2 growth factor receptor bound protein 2 2 4
MIRT548032 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548102 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 4
MIRT548217 FKBP1A FK506 binding protein 1A 2 2
MIRT548588 DDX3X DEAD-box helicase 3, X-linked 2 4
MIRT548953 CDC27 cell division cycle 27 2 2
MIRT549072 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT550368 INCENP inner centromere protein 2 6
MIRT550546 MYZAP myocardial zonula adherens protein 2 2
MIRT551491 TMEM192 transmembrane protein 192 2 4
MIRT553078 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT554104 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT555127 PTPRG protein tyrosine phosphatase, receptor type G 2 2
MIRT555477 POC1B-GALNT4 POC1B-GALNT4 readthrough 2 2
MIRT555978 NPTN neuroplastin 2 2
MIRT557011 HPRT1 hypoxanthine phosphoribosyltransferase 1 2 2
MIRT557706 GALNT4 polypeptide N-acetylgalactosaminyltransferase 4 2 2
MIRT558333 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT558488 DBN1 drebrin 1 2 2
MIRT559942 ZNF567 zinc finger protein 567 2 2
MIRT561127 ATP2B1 ATPase plasma membrane Ca2+ transporting 1 2 2
MIRT561791 PAWR pro-apoptotic WT1 regulator 2 2
MIRT562438 EEF2 eukaryotic translation elongation factor 2 2 2
MIRT563102 PABPC4L poly(A) binding protein cytoplasmic 4 like 2 2
MIRT563212 ZNF813 zinc finger protein 813 2 2
MIRT563426 KIF3A kinesin family member 3A 2 2
MIRT563473 SPIN4 spindlin family member 4 2 2
MIRT564015 HSPA4 heat shock protein family A (Hsp70) member 4 2 4
MIRT564117 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT564223 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT564503 CACNG1 calcium voltage-gated channel auxiliary subunit gamma 1 2 2
MIRT564515 DUSP3 dual specificity phosphatase 3 2 2
MIRT564811 ZBTB21 zinc finger and BTB domain containing 21 2 2
MIRT565265 TPD52 tumor protein D52 2 2
MIRT566012 RHOB ras homolog family member B 2 2
MIRT566216 PTMA prothymosin, alpha 2 2
MIRT566638 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT566821 MAPK8 mitogen-activated protein kinase 8 2 2
MIRT566948 LEPROT leptin receptor overlapping transcript 2 2
MIRT567290 HNRNPAB heterogeneous nuclear ribonucleoprotein A/B 2 2
MIRT567895 CSTF2 cleavage stimulation factor subunit 2 2 2
MIRT568731 MTRNR2L3 MT-RNR2-like 3 2 2
MIRT571263 ZNF239 zinc finger protein 239 2 2
MIRT572593 EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 2 2
MIRT573827 TGOLN2 trans-golgi network protein 2 2 2
MIRT576391 Fhl2 four and a half LIM domains 2 2 2
MIRT609901 SMS spermine synthase 2 2
MIRT613710 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 2
MIRT614406 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT615042 DCX doublecortin 2 2
MIRT617514 C5orf45 MRN complex interacting protein 2 2
MIRT619476 PRDM10 PR/SET domain 10 2 2
MIRT620349 TLN1 talin 1 2 2
MIRT620910 PLA2G7 phospholipase A2 group VII 2 2
MIRT622131 SP4 Sp4 transcription factor 2 2
MIRT622955 OTUD7B OTU deubiquitinase 7B 2 2
MIRT623351 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT623619 INTU inturned planar cell polarity protein 2 2
MIRT624409 CCDC171 coiled-coil domain containing 171 2 2
MIRT625171 CCS copper chaperone for superoxide dismutase 2 2
MIRT625685 RPP40 ribonuclease P/MRP subunit p40 2 2
MIRT625875 ALDH18A1 aldehyde dehydrogenase 18 family member A1 2 2
MIRT626002 FAM107A family with sequence similarity 107 member A 2 2
MIRT626872 HRH4 histamine receptor H4 2 4
MIRT628220 FKBP9 FK506 binding protein 9 2 2
MIRT628265 DIO2 iodothyronine deiodinase 2 2 2
MIRT628402 C8orf37 chromosome 8 open reading frame 37 2 2
MIRT630564 C3orf36 chromosome 3 open reading frame 36 2 4
MIRT631577 RASSF9 Ras association domain family member 9 2 2
MIRT635730 CCDC58 coiled-coil domain containing 58 2 2
MIRT636224 SLC8A1 solute carrier family 8 member A1 2 2
MIRT636613 CLIC5 chloride intracellular channel 5 2 2
MIRT638899 CDK9 cyclin dependent kinase 9 2 2
MIRT640167 ATXN7L1 ataxin 7 like 1 2 2
MIRT642070 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT643034 CHCHD7 coiled-coil-helix-coiled-coil-helix domain containing 7 2 2
MIRT644572 SPOP speckle type BTB/POZ protein 2 2
MIRT644954 IFNB1 interferon beta 1 2 2
MIRT645948 TTF2 transcription termination factor 2 2 2
MIRT646440 XRCC2 X-ray repair cross complementing 2 2 2
MIRT647896 EPN2 epsin 2 2 2
MIRT648276 ZNF582 zinc finger protein 582 2 2
MIRT649381 NEDD1 neural precursor cell expressed, developmentally down-regulated 1 2 2
MIRT650254 CD68 CD68 molecule 2 2
MIRT650333 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT651707 VMP1 vacuole membrane protein 1 2 2
MIRT651774 VASP vasodilator stimulated phosphoprotein 2 2
MIRT653144 SRPK2 SRSF protein kinase 2 2 2
MIRT654112 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT654161 RORB RAR related orphan receptor B 2 2
MIRT655716 MLF2 myeloid leukemia factor 2 2 2
MIRT657476 HDAC4 histone deacetylase 4 2 2
MIRT658095 FOXO1 forkhead box O1 2 2
MIRT658860 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT658988 DNAJA1 DnaJ heat shock protein family (Hsp40) member A1 2 2
MIRT660767 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT661622 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT661694 TFDP2 transcription factor Dp-2 2 2
MIRT662208 PLA2G4E phospholipase A2 group IVE 2 2
MIRT662443 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT664422 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT687505 NECAB1 N-terminal EF-hand calcium binding protein 1 2 2
MIRT689910 SOD2 superoxide dismutase 2 2 2
MIRT690781 PLA2G2C phospholipase A2 group IIC 2 2
MIRT698488 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT699685 SFMBT2 Scm like with four mbt domains 2 2 2
MIRT700926 PDS5A PDS5 cohesin associated factor A 2 2
MIRT702258 LMNB1 lamin B1 2 2
MIRT703166 GPR137C G protein-coupled receptor 137C 2 2
MIRT703242 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT704737 CENPQ centromere protein Q 2 2
MIRT707310 GLRX2 glutaredoxin 2 2 2
MIRT710021 KCNQ5 potassium voltage-gated channel subfamily Q member 5 2 2
MIRT712212 SCOC short coiled-coil protein 2 2
MIRT714742 SETBP1 SET binding protein 1 2 2
MIRT718268 ZNF749 zinc finger protein 749 2 2
MIRT720553 DYRK4 dual specificity tyrosine phosphorylation regulated kinase 4 2 2
MIRT722248 RBM41 RNA binding motif protein 41 2 2
MIRT723767 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT723977 KIAA0146 scaffolding protein involved in DNA repair 1 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4282 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)

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