pre-miRNA Information
pre-miRNA hsa-mir-4747   
Genomic Coordinates chr19: 4932687 - 4932740
Description Homo sapiens miR-4747 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4747-5p
Sequence 1| AGGGAAGGAGGCUUGGUCUUAG |22
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs560927363 4 dbSNP
rs1471226927 10 dbSNP
rs763137545 12 dbSNP
rs767337154 15 dbSNP
rs775298039 16 dbSNP
rs760472311 19 dbSNP
rs1207950315 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol KLHDC3   
Synonyms PEAS, dJ20C7.3
Description kelch domain containing 3
Transcript NM_057161   
Expression
Putative miRNA Targets on KLHDC3
3'UTR of KLHDC3
(miRNA target sites are highlighted)
>KLHDC3|NM_057161|3'UTR
   1 GAGGAAGTTTCTGCCACCTCCCCTCCTGAGCCTGCTGTCATCTTCACTGCCCCTGCCCATCTGTCACCCACCTGCTCCTT
  81 TGACCCCTGGACTTGGTATACCTCCATGTGGAGTTGTTGGGCGAGAGGTGTTCTCTGTGCTGTGAATTCAGTGGGGAGCT
 161 GTAGCGGGGTGGGGGCTAGGTTCCTCCCCCCTTGGGCCGAGGGCCCCTTCCCCTTGGTGCTCTGTCCCCATCCACCTCCT
 241 TTCAGCTGCTCCTGGGCCTCAGCTCTGCCCAGGGCCAGCCAGGTTCTGCTGGGAAGGGAAGGGAATGGGGAGAAGGGAGA
 321 AGCAAGCAGTGTCTGAGCCTCAGGAGCTTCCCCCTCCCCCTTTGCCTATCCCCTCCCCTCTGCTTGAGCCTTGAGCCTTG
 401 ACTGGGAGCTGAAAGGAGTTGCAGCTGTTGGCATGAGACCTCCTTCTCCCCGTCTTGGGGAGGTGGGGACCAGCAGATAA
 481 ATCCCACCCTTCCTTGAGCTGTCGCTGTACTCTGAAGTTCAGCCAGCTCAGATTTTATAAAAATTAATTAAAATCTCCAA
 561 ACGTGAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gauUCUGGUU--CGGAGGAAGGGa 5'
             :|:||:|  ||| ||||||| 
Target 5' cttGGGCCGAGGGCC-CCTTCCCc 3'
191 - 213 160.00 -25.00
2
miRNA  3' gauuCUG-GUUC-GGAGGAAGGGa 5'
              |:| ::|| ||||||||:| 
Target 5' tgttGGCATGAGACCTCCTTCTCc 3'
426 - 449 146.00 -19.20
3
miRNA  3' gauUCUGGUUCGG--AGGAAGGGa 5'
             |||: || ||   ||||||: 
Target 5' agcAGATAAATCCCACCCTTCCTt 3'
472 - 495 141.00 -13.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSM1255945 1 COSMIC
COSN30170834 33 COSMIC
COSN30157296 46 COSMIC
COSN30143704 53 COSMIC
COSN1333302 60 COSMIC
COSN30143479 62 COSMIC
COSN31611833 185 COSMIC
COSN1333304 356 COSMIC
COSN19630060 371 COSMIC
COSN28194333 491 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs150725436 4 dbSNP
rs753734718 6 dbSNP
rs1336299380 7 dbSNP
rs1358576256 8 dbSNP
rs751665630 14 dbSNP
rs932345810 16 dbSNP
rs754573243 25 dbSNP
rs778641311 26 dbSNP
rs1049400590 27 dbSNP
rs1301518414 31 dbSNP
rs567723860 36 dbSNP
rs891068953 36 dbSNP
rs747593069 38 dbSNP
rs758011919 41 dbSNP
rs1406175547 42 dbSNP
rs1315690558 46 dbSNP
rs1283385392 48 dbSNP
rs530971408 50 dbSNP
rs781744632 53 dbSNP
rs902324856 60 dbSNP
rs971214976 61 dbSNP
rs980174390 72 dbSNP
rs1157233640 76 dbSNP
rs1033016087 79 dbSNP
rs1409202541 80 dbSNP
rs1452814913 81 dbSNP
rs1191471608 85 dbSNP
rs1396684318 86 dbSNP
rs1246705568 87 dbSNP
rs1194794883 92 dbSNP
rs1469433444 97 dbSNP
rs550677683 108 dbSNP
rs1435155900 109 dbSNP
rs1207752832 112 dbSNP
rs1317086554 113 dbSNP
rs893218277 117 dbSNP
rs1217301428 123 dbSNP
rs570746217 124 dbSNP
rs533229960 128 dbSNP
rs1442936101 130 dbSNP
rs1373290246 131 dbSNP
rs927360373 135 dbSNP
rs1022952792 136 dbSNP
rs1169612992 143 dbSNP
rs1434436827 152 dbSNP
rs1352757015 166 dbSNP
rs941481550 167 dbSNP
rs1298262633 171 dbSNP
rs1424834981 173 dbSNP
rs1174823883 174 dbSNP
rs1038756349 177 dbSNP
rs1438291935 179 dbSNP
rs1015779337 181 dbSNP
rs1187438142 185 dbSNP
rs1485889092 186 dbSNP
rs561165330 188 dbSNP
rs745865247 190 dbSNP
rs930181520 191 dbSNP
rs1296743104 198 dbSNP
rs1214128764 199 dbSNP
rs1051353139 203 dbSNP
rs891259749 206 dbSNP
rs1054337 208 dbSNP
rs912208257 213 dbSNP
rs943967979 215 dbSNP
rs1358983031 220 dbSNP
rs1313820974 230 dbSNP
rs1436943018 231 dbSNP
rs1007467630 232 dbSNP
rs1039907474 234 dbSNP
rs1042271869 237 dbSNP
rs1428649301 240 dbSNP
rs1420953976 243 dbSNP
rs1179758775 249 dbSNP
rs902356077 250 dbSNP
rs900237024 252 dbSNP
rs999973145 259 dbSNP
rs1271489529 263 dbSNP
rs936545524 263 dbSNP
rs1033069760 264 dbSNP
rs1309798031 267 dbSNP
rs1205068136 272 dbSNP
rs546827649 274 dbSNP
rs955721305 276 dbSNP
rs1010076599 279 dbSNP
rs372855075 281 dbSNP
rs1205227809 292 dbSNP
rs1024181148 302 dbSNP
rs1294096494 303 dbSNP
rs971319649 305 dbSNP
rs746352467 314 dbSNP
rs1486561561 315 dbSNP
rs1369077602 316 dbSNP
rs1189141175 326 dbSNP
rs1251967308 328 dbSNP
rs1454410816 330 dbSNP
rs770368966 334 dbSNP
rs1023405447 339 dbSNP
rs1378179729 343 dbSNP
rs775709867 346 dbSNP
rs1418212147 348 dbSNP
rs1159727828 351 dbSNP
rs566621613 353 dbSNP
rs1345931481 354 dbSNP
rs1003540136 355 dbSNP
rs1455381690 357 dbSNP
rs535641675 358 dbSNP
rs961613903 359 dbSNP
rs768698366 360 dbSNP
rs55796558 369 dbSNP
rs8540 371 dbSNP
rs1223785183 372 dbSNP
rs1349022835 373 dbSNP
rs974196108 376 dbSNP
rs537872497 377 dbSNP
rs557437789 378 dbSNP
rs1211307183 379 dbSNP
rs1292287337 383 dbSNP
rs1460518929 383 dbSNP
rs1271946324 386 dbSNP
rs1468645176 390 dbSNP
rs918556108 391 dbSNP
rs186819417 405 dbSNP
rs1469432981 409 dbSNP
rs1051135582 410 dbSNP
rs1177749254 411 dbSNP
rs1410039973 412 dbSNP
rs1421932468 422 dbSNP
rs1162912442 423 dbSNP
rs1247385753 425 dbSNP
rs912810464 428 dbSNP
rs1462173417 432 dbSNP
rs1265260619 435 dbSNP
rs1328172194 436 dbSNP
rs1468100179 438 dbSNP
rs1253629222 439 dbSNP
rs942995035 440 dbSNP
rs554916353 441 dbSNP
rs774214862 442 dbSNP
rs1260340548 443 dbSNP
rs977722414 452 dbSNP
rs568345654 453 dbSNP
rs1440729256 456 dbSNP
rs935722470 458 dbSNP
rs146592339 459 dbSNP
rs1432239495 463 dbSNP
rs140152880 464 dbSNP
rs1289079908 465 dbSNP
rs1053573487 469 dbSNP
rs1375659891 475 dbSNP
rs1172938605 479 dbSNP
rs916390343 481 dbSNP
rs1009857874 482 dbSNP
rs1195627844 483 dbSNP
rs1190266962 484 dbSNP
rs1463598905 487 dbSNP
rs1205882665 488 dbSNP
rs948827483 488 dbSNP
rs760811335 489 dbSNP
rs1002910460 493 dbSNP
rs1215690014 494 dbSNP
rs367876716 498 dbSNP
rs1306233151 501 dbSNP
rs1001475564 504 dbSNP
rs369104793 514 dbSNP
rs761548529 523 dbSNP
rs1383487405 525 dbSNP
rs1399836301 528 dbSNP
rs897437228 530 dbSNP
rs962581134 531 dbSNP
rs1027170098 532 dbSNP
rs1274022914 538 dbSNP
rs1446648667 539 dbSNP
rs1166627064 556 dbSNP
rs114541543 557 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM4903825
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / PID14_NS
Location of target site NM_001242872 | 3UTR | AGCGGGGUGGGGGCUAGGUUCCUCCCCCCUUGGGCCGAGGGCCCCUUCCCCUUGGUGCUCUGUCCCCAUCCACCUCCUUUCAGCUGCUCCUGGGCCUCAGCUCUGCCCAGGGCCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161237
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000326974.4 | 3UTR | CCCCUUCCCCUUGGUGCUCUGUCCCCAUCCACCUCCUUUCAGCUGCUCCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
215 hsa-miR-4747-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT061689 BTG2 BTG anti-proliferation factor 2 2 2
MIRT062834 BCL7A BCL tumor suppressor 7A 2 2
MIRT079371 CCDC137 coiled-coil domain containing 137 2 2
MIRT081190 MIDN midnolin 2 4
MIRT081724 ZNF507 zinc finger protein 507 2 2
MIRT110565 ZMYND11 zinc finger MYND-type containing 11 2 2
MIRT133724 SKI SKI proto-oncogene 2 4
MIRT146689 MINK1 misshapen like kinase 1 2 2
MIRT150676 SLC27A1 solute carrier family 27 member 1 2 2
MIRT159196 NRBP1 nuclear receptor binding protein 1 2 2
MIRT180865 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT190659 PABPN1 poly(A) binding protein nuclear 1 2 2
MIRT196111 MPRIP myosin phosphatase Rho interacting protein 2 2
MIRT232390 SP1 Sp1 transcription factor 2 2
MIRT331070 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 4
MIRT338632 SHMT2 serine hydroxymethyltransferase 2 2 2
MIRT407441 CTDSP1 CTD small phosphatase 1 2 2
MIRT444276 NKX6-1 NK6 homeobox 1 2 2
MIRT444834 PDE6D phosphodiesterase 6D 2 2
MIRT445452 EXT1 exostosin glycosyltransferase 1 2 2
MIRT445644 NPY4R neuropeptide Y receptor Y4 2 2
MIRT446157 RPL12 ribosomal protein L12 2 2
MIRT446608 HIP1 huntingtin interacting protein 1 2 2
MIRT447108 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT449314 MRO maestro 2 2
MIRT450305 DRAXIN dorsal inhibitory axon guidance protein 2 2
MIRT451245 ZNF444 zinc finger protein 444 2 2
MIRT451714 OLR1 oxidized low density lipoprotein receptor 1 2 2
MIRT451908 ILK integrin linked kinase 2 2
MIRT452183 KIAA1456 KIAA1456 2 2
MIRT452610 REPIN1 replication initiator 1 2 2
MIRT453422 GLG1 golgi glycoprotein 1 2 2
MIRT454006 ALKBH5 alkB homolog 5, RNA demethylase 2 2
MIRT455072 ARHGAP39 Rho GTPase activating protein 39 2 2
MIRT455319 TTLL9 tubulin tyrosine ligase like 9 2 2
MIRT455357 KDM5C lysine demethylase 5C 2 2
MIRT455589 TAF12 TATA-box binding protein associated factor 12 2 2
MIRT455711 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT455860 TMEM254 transmembrane protein 254 2 2
MIRT455919 RAPGEF1 Rap guanine nucleotide exchange factor 1 2 2
MIRT455946 CYP4A22 cytochrome P450 family 4 subfamily A member 22 2 2
MIRT456935 LRP10 LDL receptor related protein 10 2 2
MIRT457223 AP3D1 adaptor related protein complex 3 delta 1 subunit 2 2
MIRT457431 NOL10 nucleolar protein 10 2 2
MIRT457470 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457907 ZNF212 zinc finger protein 212 2 2
MIRT458046 TSEN54 tRNA splicing endonuclease subunit 54 2 2
MIRT458073 RNLS renalase, FAD dependent amine oxidase 2 2
MIRT458234 NXPH3 neurexophilin 3 2 2
MIRT458307 TNFAIP8L3 TNF alpha induced protein 8 like 3 2 2
MIRT458378 ITM2C integral membrane protein 2C 2 2
MIRT458967 ZNF436 zinc finger protein 436 2 2
MIRT459099 CYP4A11 cytochrome P450 family 4 subfamily A member 11 2 2
MIRT459446 TMEM37 transmembrane protein 37 2 2
MIRT459671 VPS37C VPS37C, ESCRT-I subunit 2 2
MIRT460727 ASXL3 additional sex combs like 3, transcriptional regulator 2 2
MIRT460744 SRP14 signal recognition particle 14 2 2
MIRT461531 C14orf1 ergosterol biosynthesis 28 homolog 2 2
MIRT461752 DDX11 DEAD/H-box helicase 11 2 2
MIRT461837 F2RL3 F2R like thrombin or trypsin receptor 3 2 2
MIRT462019 RIF1 replication timing regulatory factor 1 2 2
MIRT462631 PHF5A PHD finger protein 5A 2 2
MIRT462772 ZNF8 zinc finger protein 8 2 2
MIRT463032 ZNF689 zinc finger protein 689 2 2
MIRT463886 WNT7B Wnt family member 7B 2 2
MIRT463995 WDTC1 WD and tetratricopeptide repeats 1 2 2
MIRT464371 URM1 ubiquitin related modifier 1 2 2
MIRT465342 TPM3 tropomyosin 3 2 4
MIRT465515 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT465602 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT465697 TNPO2 transportin 2 2 10
MIRT466988 SSRP1 structure specific recognition protein 1 2 4
MIRT467630 SLC7A5 solute carrier family 7 member 5 2 2
MIRT468132 SH3PXD2A SH3 and PX domains 2A 2 2
MIRT468322 SF3B3 splicing factor 3b subunit 3 2 2
MIRT468502 SESN2 sestrin 2 2 2
MIRT468881 RREB1 ras responsive element binding protein 1 2 2
MIRT469322 RGP1 RGP1 homolog, RAB6A GEF complex partner 1 2 2
MIRT469562 RARA retinoic acid receptor alpha 2 2
MIRT469898 PTRF caveolae associated protein 1 2 2
MIRT470045 PTGFRN prostaglandin F2 receptor inhibitor 2 2
MIRT470068 PTGES2 prostaglandin E synthase 2 2 2
MIRT470238 PRRC2A proline rich coiled-coil 2A 2 2
MIRT470390 PPP1R16B protein phosphatase 1 regulatory subunit 16B 2 2
MIRT470500 PPP1R11 protein phosphatase 1 regulatory inhibitor subunit 11 2 2
MIRT470689 POLR2D RNA polymerase II subunit D 2 2
MIRT470704 POGK pogo transposable element derived with KRAB domain 2 2
MIRT471083 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT472482 NACC2 NACC family member 2 2 2
MIRT473583 MAT2A methionine adenosyltransferase 2A 2 2
MIRT474554 KLHDC3 kelch domain containing 3 2 2
MIRT474651 KLF13 Kruppel like factor 13 2 2
MIRT474843 KHSRP KH-type splicing regulatory protein 2 2
MIRT474934 KCTD15 potassium channel tetramerization domain containing 15 2 2
MIRT475573 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 2 2
MIRT476045 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT476080 GRB2 growth factor receptor bound protein 2 2 2
MIRT476440 GBA2 glucosylceramidase beta 2 2 2
MIRT476764 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT478785 CRTC2 CREB regulated transcription coactivator 2 2 2
MIRT479287 CHAC1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 2 2
MIRT479505 CDH6 cadherin 6 2 2
MIRT479732 CCND1 cyclin D1 2 6
MIRT480352 C5orf24 chromosome 5 open reading frame 24 2 2
MIRT480407 C19orf47 chromosome 19 open reading frame 47 2 2
MIRT480859 BHLHB9 basic helix-loop-helix family member b9 2 2
MIRT481445 ARRB2 arrestin beta 2 2 2
MIRT481732 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT481824 AP2M1 adaptor related protein complex 2 mu 1 subunit 2 2
MIRT482566 ABHD2 abhydrolase domain containing 2 2 2
MIRT482607 ABHD14B abhydrolase domain containing 14B 2 2
MIRT483144 SYCE1L synaptonemal complex central element protein 1 like 2 2
MIRT483214 APOA1 apolipoprotein A1 2 6
MIRT483878 TGIF1 TGFB induced factor homeobox 1 2 2
MIRT483917 SPSB1 splA/ryanodine receptor domain and SOCS box containing 1 2 2
MIRT483939 LENG8 leukocyte receptor cluster member 8 2 4
MIRT484420 SNX19 sorting nexin 19 2 2
MIRT484489 SLC9A1 solute carrier family 9 member A1 2 2
MIRT484612 SIX3 SIX homeobox 3 2 6
MIRT484705 RNF11 ring finger protein 11 2 2
MIRT485107 SHISA6 shisa family member 6 2 2
MIRT485354 MYO1C myosin IC 2 4
MIRT485609 FOSL1 FOS like 1, AP-1 transcription factor subunit 2 4
MIRT487311 GLTSCR1 BRD4 interacting chromatin remodeling complex associated protein 2 2
MIRT487417 CACNB1 calcium voltage-gated channel auxiliary subunit beta 1 2 2
MIRT487695 CDK14 cyclin dependent kinase 14 2 2
MIRT487791 GPR20 G protein-coupled receptor 20 2 4
MIRT488042 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT488058 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT488237 DNLZ DNL-type zinc finger 2 4
MIRT488764 FXYD1 FXYD domain containing ion transport regulator 1 2 2
MIRT489401 TUBB2A tubulin beta 2A class IIa 2 2
MIRT489777 GRINA glutamate ionotropic receptor NMDA type subunit associated protein 1 2 2
MIRT490099 FN3K fructosamine 3 kinase 2 2
MIRT490290 ISL2 ISL LIM homeobox 2 2 2
MIRT490378 LHFPL3 LHFPL tetraspan subfamily member 3 2 2
MIRT491329 GFER growth factor, augmenter of liver regeneration 2 2
MIRT491435 MSX2 msh homeobox 2 2 2
MIRT491769 ZNF385A zinc finger protein 385A 2 2
MIRT491922 WNK2 WNK lysine deficient protein kinase 2 2 2
MIRT491983 UNK unkempt family zinc finger 2 2
MIRT492228 SLC48A1 solute carrier family 48 member 1 2 2
MIRT492404 SDK1 sidekick cell adhesion molecule 1 2 2
MIRT492767 PDGFB platelet derived growth factor subunit B 2 2
MIRT492966 NCS1 neuronal calcium sensor 1 2 2
MIRT493295 LLGL2 LLGL2, scribble cell polarity complex component 2 2
MIRT493650 HDLBP high density lipoprotein binding protein 2 2
MIRT493913 FAM127B retrotransposon Gag like 8A 2 4
MIRT495601 NKX2-5 NK2 homeobox 5 2 2
MIRT496875 AHCYL2 adenosylhomocysteinase like 2 2 2
MIRT498514 MYH14 myosin heavy chain 14 2 2
MIRT499178 RBPJL recombination signal binding protein for immunoglobulin kappa J region like 2 2
MIRT502143 KIF5B kinesin family member 5B 2 8
MIRT502692 CSNK1G1 casein kinase 1 gamma 1 2 4
MIRT508460 HOXB6 homeobox B6 2 4
MIRT510430 ZNF207 zinc finger protein 207 2 6
MIRT511837 GPATCH8 G-patch domain containing 8 2 4
MIRT512368 CPM carboxypeptidase M 2 2
MIRT512506 BTBD19 BTB domain containing 19 2 2
MIRT513065 ANKRD45 ankyrin repeat domain 45 2 2
MIRT513267 SCUBE1 signal peptide, CUB domain and EGF like domain containing 1 2 4
MIRT513575 EVX1 even-skipped homeobox 1 2 2
MIRT515051 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT515790 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT521657 PRKD3 protein kinase D3 2 2
MIRT522679 LUZP1 leucine zipper protein 1 2 6
MIRT528845 RAB32 RAB32, member RAS oncogene family 2 2
MIRT533569 TOR1AIP1 torsin 1A interacting protein 1 2 2
MIRT543738 DHCR7 7-dehydrocholesterol reductase 2 2
MIRT544295 TSPYL1 TSPY like 1 2 2
MIRT544857 MYH2 myosin heavy chain 2 2 4
MIRT557323 HIATL1 major facilitator superfamily domain containing 14B 2 4
MIRT560522 TMEM98 transmembrane protein 98 2 2
MIRT561565 SLC6A9 solute carrier family 6 member 9 2 2
MIRT562374 ERI2 ERI1 exoribonuclease family member 2 2 2
MIRT565780 SEMA6D semaphorin 6D 2 2
MIRT569548 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT569944 PRRT2 proline rich transmembrane protein 2 2 2
MIRT570016 COL1A2 collagen type I alpha 2 chain 2 2
MIRT572163 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT572322 HSPB6 heat shock protein family B (small) member 6 2 2
MIRT573495 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT574139 MARVELD1 MARVEL domain containing 1 2 2
MIRT609449 CCDC149 coiled-coil domain containing 149 2 2
MIRT610619 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT623355 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT629854 ACOX1 acyl-CoA oxidase 1 2 2
MIRT630516 CDC73 cell division cycle 73 2 2
MIRT632535 PSMB2 proteasome subunit beta 2 2 2
MIRT633975 SLC35E2 solute carrier family 35 member E2 2 2
MIRT636408 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT641722 LTBR lymphotoxin beta receptor 2 2
MIRT642661 RGS6 regulator of G protein signaling 6 2 2
MIRT649649 MAST3 microtubule associated serine/threonine kinase 3 2 2
MIRT650367 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT651355 ZBTB40 zinc finger and BTB domain containing 40 2 2
MIRT664840 HUS1 HUS1 checkpoint clamp component 2 2
MIRT667322 MYH9 myosin heavy chain 9 2 2
MIRT670680 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT674922 TRPM6 transient receptor potential cation channel subfamily M member 6 2 2
MIRT675919 CYP51A1 cytochrome P450 family 51 subfamily A member 1 2 2
MIRT676493 GJD3 gap junction protein delta 3 2 2
MIRT680162 ZDHHC20 zinc finger DHHC-type containing 20 2 2
MIRT688008 GSN gelsolin 2 2
MIRT688997 ATP6AP1 ATPase H+ transporting accessory protein 1 2 2
MIRT700337 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT701344 NR4A3 nuclear receptor subfamily 4 group A member 3 2 2
MIRT703519 FKBP15 FK506 binding protein 15 2 2
MIRT703901 EPT1 selenoprotein I 2 2
MIRT705565 ARHGEF18 Rho/Rac guanine nucleotide exchange factor 18 2 2
MIRT709709 DNAJC11 DnaJ heat shock protein family (Hsp40) member C11 2 2
MIRT713108 TMBIM4 transmembrane BAX inhibitor motif containing 4 2 2
MIRT718426 ZNF85 zinc finger protein 85 2 2
MIRT719236 CYSLTR2 cysteinyl leukotriene receptor 2 2 2
MIRT719326 STAC SH3 and cysteine rich domain 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4747 Paclitaxel 36314 NSC125973 approved resistant cell line (A2780)
hsa-miR-4747-5p Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-4747-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4747-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

Error report submission