miRTarBase - #MIRT474704


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pre-miRNA Information
pre-miRNA hsa-mir-4316   
Genomic Coordinates chr17: 77396984 - 77397054
Description Homo sapiens miR-4316 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4316
Sequence 11| GGUGAGGCUAGCUGGUG |27
Evidence Experimental
Experiments SOLiD
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs989002279 5 dbSNP
rs957742923 17 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol KIF3A   
Synonyms FLA10, KLP-20
Description kinesin family member 3A
Transcript NM_007054   
Expression
Putative miRNA Targets on KIF3A
3'UTR of KIF3A
(miRNA target sites are highlighted)		 
>KIF3A|NM_007054|3'UTR
   1 ATGTTACAGACTTAAAGTCACAATAAAAATTAGTGATATTCTCATGCCTGGACAAAATCTTTAATTAAAACAGTGAAGAC
  81 TTCTCTATAATTTCAATTAATGGAAGTTGTAGATCAATGAATAAGACTGGAAATAATAATTTGCTTAAGAACTTTTAGTC
 161 TACATATATTAATATAACATTAAAATTGTACAACTGGTGATTGTTCAAATTGTTGTACTACTACTCTTCAATTGTACTGT
 241 GCAGGGAAGTTGGGGGAACAGTTCATACTATAGAGAGTTACAGTTTAGATGTATGTGTAAATCGATTAGCTATTTATCCA
 321 ACTACTGTATATTTAGGTAACTAGAATTTCAAAATAGAAAAAAAAAAACTGTGTCCTGTTTTGCACATAGAAAGAAGCAG
 401 ATCAGATTGTCCTATGTTGCGCTGTTATATATGAATGTTTGGACTGTACATCTAAAGAATGATTCCGTCCTAACACCCAC
 481 CCAGCCTGTTTGAACACATTCTAATTGTCTAACATTTGTTGCATTTTAAGTATGAGATGACTGATCTTATGAATGTTTTG
 561 TAGAAAATGTTATAATTTAACAGTCTTTGCGAGTATACATGTTTTTTAACAAGTTGAAAATGTTTCATCTGAACCTTTCC
 641 TAACTTTTTTTTGCCAGTTTGAGTTCAAATCAAATACACCTTAAGTTCTGGTTTCATGTTCTCTTGAAACATTGAATTGT
 721 ACGTAAATATAAAGGATCTACTGTTGCGGAAAATTAAGAAGCTAAATACTGCTCAGTTATCTTTGCCTGCGTGTATATTT
 801 TTAAAAATTCACTCTGAAGTGTTATGGATGCTTTTCTTTGAGTTCTAAATTTTGGTGGGAATTACTTTATGTCTCCCAGT
 881 TAAGAAGAGTCTCCATTTTCCAGAAAATACAGCTAAGCAAGAAAAATATCTTTTAAATACTTTGCCTTTAAAACACTTTT
 961 TTATTTTGTTTTTCTATTTTAAAAATAAAATATTATTTTCTGAATTTCTTCTATTGGGTAATCCAGTTAGACCATATTCC
1041 TCTACAAATAAAAACTATGTTGATTTCATAGTAAAGTAAGTTGTAATAGAGATAATTATTTTTTTCTGTTGTTAGCTGCT
1121 TATGAAACTTTTATTGTATTTTTTTAAAGTTATGCTACTCCTGGCCGGGCATGGTGGCTCACGCCTGTAATCCCAGCACT
1201 TTGGGAGGCCGAGGCACGTGGATCACTTGATGTCAGGAGTTCGAGACCAGCCTGGCTAACATGGTGAAACCCTGTCTCCA
1281 GTACAAATACAATAATTAGCTGGGTGTGGTGGCGCACACCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCA
1361 CTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCTGAGATGGCATCACTGCACTCCAGCCTGGGTGACAGGGTGACACTCCA
1441 CCTCAAAAAATAAAAATAAAATAAAAATAAAGTTATGCTACTCCTAAACCACTTAATATATGTTTTGTGGTTTTCAAAAT
1521 TATGTAATCAGCCCTGAAACACATTGGTTGAAAATATTTTGAGACTTTATAAGTTAGTATTTATTAAATTAATATTATTT
1601 TAATAAGTTTTGTTAAATCCTAGTTTAAATGACAAAGCTGTGTATAGAGTAGGGGTGAGTGAAGGTGGAGTACTCTTGAG
1681 GTGGCGATAAAAATGTACCCATAAATTTAAAGTCCATTCTGTAATTGGAATACTGAATGTCCTGTGTGTGGTGAACATTT
1761 TCTAGGTGATTAGAATTGCATTTCACTGGCTGCATTTGTTTGTGGTATGTAAGATAGCTAGAAATTTATTACTTAACTCT
1841 GTGGGGCATTGTTTAGATACTGTGAAGAGTTGAGGTAAATATGTGTCTTGTAAAAGCTTTGTGTGATCAGAATATTTTGG
1921 TAATTATAAAATGTTTTTGATGATACACATTTAACTCTGTTAGTAATTACTCTAAAGAAATCTTAATTTTACCAGTTTAA
2001 AAAAAACGCTTCTTTTTAAAAGTTCATGTTTCTAACCTTTAACAATTCAGTTAATAGGAAAGGAGTAACTTTTAAATCAA
2081 GCTTTAAAACATGGAAATTTAAGCCAGTATGTTAGATATTTTTTCTATCCCACCCTACCATGATAATAAAAATAAATCTA
2161 TAAAAAGTCAAAATAAAAAGCCGATCTATAAAAAGTCAATTGAGAAGTTCTAAAAGCAGGCTACTATAGCAGGGGTGTTT
2241 GTTTTTTGTTTGGAGACGGAGTCTGGCTCTATTACCTAGGCTGGAGTGCAGTGGGACAATCTCGGCTCACTGTAACCTCT
2321 GTCTCTTCAGCCTCCTGAGTTGCTGGAACTACAGCTGTATGCCATCATGCTCGGCTAATTTTTGTATTTTTTTGTAGAGA
2401 TGGGGTTTTGCCATGTTGCCCGGGCCTGTCTTGAACTCCTAGAGCTTAAGTGATCCACCCGCCTCAGGCTCCCGAAGTGC
2481 TGGGATTACAGGCATGATTATAGGCCTGAGCCACCACACCCCGCCTACTATAGCAGTTTTTTAAAAAAAGCATTATGTTA
2561 AAACTGATTATACCAGATGGACATTAAATATCCATCTCAGAAATACCAAAATTTGATACATAAGCCTGGCCTGAATATCT
2641 TTTTTTTTTTTTTGAGACGGAGTCTTACTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAACCTC
2721 TGCCTCCTGGGTTCAAGGGATTCTCCTGCCTCAGCCTCTTGAGTAGCTGGGATTACAGGTTTGCGCCACCACACCCAGCT
2801 AATTTTTGTATTTTTTTTTTAGTAGAGACCGGGTTTCACCATGTTGGCCAGGCTGGTCTCACCTGACTTTGTGATCCGCC
2881 CGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCACGCCTGGCCTCAAGCCTGGTCTGAATATCTATATG
2961 CAAATATGGGACACTGACTTCAGAGCTATTCATTTAGCTCCAGTCATAGCAATTCTGTAGTTTCCTCACATTTACTGTGT
3041 CTTTGTCCACAAATGAAATATGTTGTAAGGTCAGTGTTAATTTCGTGAGACGATATAGATGAACACACTTGCTCATTTTT
3121 TGAAATAAATATGCAGATTTAAAATGAGTGGCACATATATATAAATAGGTTATTGAATGGGTATTCTCTTTTCCCTTTAA
3201 TTTAAAAAGTGATATTTATTTATTAAAAGGAGCATTGGTAGAATTATTGGTTTATAGTATCTTCTTTAATAATCCTTACA
3281 ATTACATATACTAATAGGATGTTAAAATTATCATCGTGTTTCCTATTTGTGTTTAGATTCTTATAAAGCATGAGATGAGT
3361 AATCAAGGGAAGGGTCGCATCTCCATGTTTGCCCCATGAATAGAATCCATTTGACAAGCCATTTCATTTCCTTTCTGGAG
3441 AAAGGGAGTTGTTTTTTTTTTCTTTTTACAGCAAAAATTTAAGGTTTTATTGGGGGAGGGGGTGGTGCTACTTCCTCTGT
3521 AACATGTTTTTAAAACTATGATTATGGTTTTTGGTTGTTTTTTGTTTTGTTTGTTTCCTTTTAGTCTGTTTTTAATATCC
3601 TTCCCCTTAACTCTTAAGGAAAGTCTTCTTTCCTACAGGGCTGTGAATTAAGGAATGGGTAGCGTTTACATTTAAGTACA
3681 CCAATGTCTGCCCAATTTCCTAATGTATACATTTGTTTTATTTTAAATTATTTTTTGTTCTTAAAAATACTAGAAGAAAA
3761 CATAGATGTTTCTAGTGCCTTTGAACTTATACTGTAGTCTGACTAATTTAATGAATAACTTCAGTAGCATTACTATAATA
3841 CTGTATGCTGGCCAAAATTACAAATTACAGTTTGTTGCATCAGTTTCAAAAGCCATGCTTTCATTGTATTTTATGTATAA
3921 ATTGTATTTGTTCAAGTTGTATATATTGGTATTGTATGTATACATGCAGCATGGTTAAATAAGAATAAAAATCTTTTACC
4001 TAATGCCAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' guGGU-CGAUCGGAGUGg 5'
            ||| |||:|:||||| 
Target 5' ggCCAGGCTGGTCTCACc 3'
 2846 - 2863 147.00 -24.80
2 
miRNA  3' guGGU-C-GAUCGGAGUgg 5'
            ||| | ||:||||||  
Target 5' caCCACGCCTGGCCTCAag 3'
 2921 - 2939 135.00 -19.50
3 
miRNA  3' guGGUCGAUCGGAGUgg 5'
            :| ||  ||||||  
Target 5' gaTCCGCCCGCCTCAgc 3'
 2873 - 2889 127.00 -14.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30527977 23 COSMIC
COSN30533194 29 COSMIC
COSN31600218 59 COSMIC
COSN18718476 60 COSMIC
COSN31607988 89 COSMIC
COSN508911 102 COSMIC
COSN30101974 125 COSMIC
COSN30512385 125 COSMIC
COSN26565345 268 COSMIC
COSN20101808 357 COSMIC
COSN25179691 363 COSMIC
COSN26564606 482 COSMIC
COSN20091243 692 COSMIC
COSN20101803 957 COSMIC
COSN7052430 1607 COSMIC
COSN14728428 1659 COSMIC
COSN21594779 1872 COSMIC
COSN9405939 1939 COSMIC
COSN9405938 2176 COSMIC
COSN25350281 2523 COSMIC
COSN25401124 2543 COSMIC
COSN6583658 2602 COSMIC
COSN28356252 2705 COSMIC
COSN14756452 2835 COSMIC
COSN30161791 2915 COSMIC
COSN26636778 3010 COSMIC
COSN31483220 3017 COSMIC
COSN31534111 3028 COSMIC
COSN31608272 3041 COSMIC
COSN24979421 3146 COSMIC
COSN26583659 3150 COSMIC
COSN31556942 3156 COSMIC
COSN2070575 3409 COSMIC
COSN21595000 3446 COSMIC
COSN20101802 3451 COSMIC
COSN31528672 3551 COSMIC
COSN30164659 3586 COSMIC
COSN31611155 3730 COSMIC
COSN31513870 3900 COSMIC
rs17690965 1659 GWAS
rs4705963 2835 GWAS
rs17510339 2912 GWAS
rs4705962 3468 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs748130062 1 dbSNP
rs1441672844 6 dbSNP
rs950853382 18 dbSNP
rs1401462894 23 dbSNP
rs776548288 31 dbSNP
rs1303340889 32 dbSNP
rs752754929 35 dbSNP
rs779064367 37 dbSNP
rs367715945 38 dbSNP
rs1384793999 39 dbSNP
rs1425550608 41 dbSNP
rs1165299439 43 dbSNP
rs1169617417 48 dbSNP
rs749801541 49 dbSNP
rs200200989 50 dbSNP
rs1026359100 53 dbSNP
rs1048954266 59 dbSNP
rs765728118 63 dbSNP
rs1330203673 72 dbSNP
rs1376952407 73 dbSNP
rs1291719612 83 dbSNP
rs1320966178 94 dbSNP
rs574008530 113 dbSNP
rs557175585 117 dbSNP
rs1312304797 123 dbSNP
rs1381507533 133 dbSNP
rs747665841 139 dbSNP
rs930474272 147 dbSNP
rs921847395 157 dbSNP
rs1410143434 158 dbSNP
rs1452223677 160 dbSNP
rs1273584981 162 dbSNP
rs879534366 164 dbSNP
rs777053647 165 dbSNP
rs1007243663 168 dbSNP
rs889710223 173 dbSNP
rs975066627 174 dbSNP
rs1242615345 181 dbSNP
rs1445460886 186 dbSNP
rs1189950180 190 dbSNP
rs1050963276 197 dbSNP
rs543655884 208 dbSNP
rs1475314302 213 dbSNP
rs1168884392 217 dbSNP
rs1329130287 217 dbSNP
rs1403021327 223 dbSNP
rs1468712473 224 dbSNP
rs370686985 231 dbSNP
rs988517721 232 dbSNP
rs1396235102 234 dbSNP
rs998020490 236 dbSNP
rs567802528 238 dbSNP
rs183467237 256 dbSNP
rs1278627617 257 dbSNP
rs78683393 258 dbSNP
rs1221683549 268 dbSNP
rs1262577226 270 dbSNP
rs914915026 273 dbSNP
rs1054795129 276 dbSNP
rs1446659158 286 dbSNP
rs938296424 287 dbSNP
rs928228421 294 dbSNP
rs1426234200 301 dbSNP
rs1470695772 303 dbSNP
rs17166194 304 dbSNP
rs1427959488 305 dbSNP
rs747603660 308 dbSNP
rs565927162 312 dbSNP
rs1014954555 316 dbSNP
rs919397838 318 dbSNP
rs1437730317 319 dbSNP
rs895816291 321 dbSNP
rs1342206265 322 dbSNP
rs1221590904 335 dbSNP
rs973490315 338 dbSNP
rs1244367270 339 dbSNP
rs1205000737 341 dbSNP
rs1459604399 349 dbSNP
rs1262050899 350 dbSNP
rs1015628822 353 dbSNP
rs12514976 354 dbSNP
rs1277533647 355 dbSNP
rs535753698 357 dbSNP
rs1340984591 368 dbSNP
rs1265773130 369 dbSNP
rs1489975344 369 dbSNP
rs397760002 369 dbSNP
rs558132997 369 dbSNP
rs58963671 369 dbSNP
rs1435441082 370 dbSNP
rs774029743 370 dbSNP
rs1317142282 371 dbSNP
rs888505259 375 dbSNP
rs1454592172 379 dbSNP
rs1452590452 381 dbSNP
rs1158928303 382 dbSNP
rs1018062551 383 dbSNP
rs1362185840 384 dbSNP
rs1402827870 387 dbSNP
rs527918414 388 dbSNP
rs1368143569 392 dbSNP
rs1048526080 397 dbSNP
rs930452573 397 dbSNP
rs570049261 403 dbSNP
rs34232731 406 dbSNP
rs1241115033 410 dbSNP
rs954832089 414 dbSNP
rs1029600816 420 dbSNP
rs549929573 421 dbSNP
rs1489753975 429 dbSNP
rs944660234 430 dbSNP
rs911542098 431 dbSNP
rs1157187748 440 dbSNP
rs902376613 445 dbSNP
rs1438585093 460 dbSNP
rs1042226513 461 dbSNP
rs533373412 466 dbSNP
rs368430848 467 dbSNP
rs1055250124 470 dbSNP
rs1350320499 471 dbSNP
rs1386343538 474 dbSNP
rs1459364964 476 dbSNP
rs768230266 489 dbSNP
rs1296427764 498 dbSNP
rs752723321 499 dbSNP
rs934347034 518 dbSNP
rs1447553220 522 dbSNP
rs937695940 549 dbSNP
rs927609997 550 dbSNP
rs1484863362 573 dbSNP
rs1245610541 576 dbSNP
rs1046644183 590 dbSNP
rs570965845 591 dbSNP
rs551200317 599 dbSNP
rs970244791 609 dbSNP
rs973595597 617 dbSNP
rs1458622674 619 dbSNP
rs1023596820 627 dbSNP
rs868768872 635 dbSNP
rs963831935 642 dbSNP
rs910638241 644 dbSNP
rs1442388622 646 dbSNP
rs960599337 651 dbSNP
rs1015869236 657 dbSNP
rs986595365 662 dbSNP
rs528234369 676 dbSNP
rs954704521 692 dbSNP
rs1243716426 696 dbSNP
rs1466083323 698 dbSNP
rs1030321494 701 dbSNP
rs1333445506 706 dbSNP
rs1027035392 720 dbSNP
rs748791118 722 dbSNP
rs192563423 723 dbSNP
rs1381660817 726 dbSNP
rs1020833456 735 dbSNP
rs577599233 747 dbSNP
rs1295322651 748 dbSNP
rs542640032 765 dbSNP
rs893591744 769 dbSNP
rs1321926818 772 dbSNP
rs1316514830 773 dbSNP
rs1400425516 774 dbSNP
rs890342089 775 dbSNP
rs944625477 775 dbSNP
rs1484040914 776 dbSNP
rs1184493256 779 dbSNP
rs1422745482 787 dbSNP
rs1478101314 789 dbSNP
rs1366618151 790 dbSNP
rs72799407 791 dbSNP
rs1002333531 792 dbSNP
rs867326603 795 dbSNP
rs1413941333 798 dbSNP
rs1176913455 802 dbSNP
rs1361051975 810 dbSNP
rs563595655 814 dbSNP
rs1046029566 817 dbSNP
rs1288650822 820 dbSNP
rs929601084 825 dbSNP
rs1402370429 830 dbSNP
rs1281969862 836 dbSNP
rs1323486707 841 dbSNP
rs769713822 847 dbSNP
rs1385201076 854 dbSNP
rs543595045 855 dbSNP
rs1278722537 860 dbSNP
rs577921051 873 dbSNP
rs898077221 875 dbSNP
rs1042810237 878 dbSNP
rs146413698 890 dbSNP
rs1476139814 905 dbSNP
rs746032741 910 dbSNP
rs942228140 926 dbSNP
rs1192028265 929 dbSNP
rs1471481390 935 dbSNP
rs545392015 939 dbSNP
rs376710138 956 dbSNP
rs372447479 957 dbSNP
rs993378109 959 dbSNP
rs199610810 963 dbSNP
rs397999285 963 dbSNP
rs5871461 963 dbSNP
rs1477665727 968 dbSNP
rs1173164328 972 dbSNP
rs908753086 976 dbSNP
rs1158323049 996 dbSNP
rs1361532395 998 dbSNP
rs1421861251 1007 dbSNP
rs572530728 1013 dbSNP
rs1163702250 1022 dbSNP
rs555462001 1025 dbSNP
rs986259990 1026 dbSNP
rs781164317 1030 dbSNP
rs1274915479 1049 dbSNP
rs1215180414 1054 dbSNP
rs1341568906 1068 dbSNP
rs535473792 1085 dbSNP
rs1284818889 1087 dbSNP
rs1354001373 1092 dbSNP
rs933372188 1093 dbSNP
rs35398309 1095 dbSNP
rs1251688724 1099 dbSNP
rs1289326620 1106 dbSNP
rs1450958402 1107 dbSNP
rs1268600789 1114 dbSNP
rs188906842 1128 dbSNP
rs757026054 1136 dbSNP
rs115401962 1153 dbSNP
rs1216776948 1164 dbSNP
rs778019855 1166 dbSNP
rs1403558962 1167 dbSNP
rs539607053 1171 dbSNP
rs183965193 1173 dbSNP
rs1406441375 1176 dbSNP
rs957911819 1177 dbSNP
rs1353301910 1178 dbSNP
rs191765622 1182 dbSNP
rs1214364062 1183 dbSNP
rs1019708610 1185 dbSNP
rs1312627100 1196 dbSNP
rs1001935350 1197 dbSNP
rs1445884819 1199 dbSNP
rs1355440073 1207 dbSNP
rs1210327344 1208 dbSNP
rs1291880835 1210 dbSNP
rs1166863337 1211 dbSNP
rs1436027881 1215 dbSNP
rs906290991 1217 dbSNP
rs1024634028 1218 dbSNP
rs993134201 1222 dbSNP
rs1368228015 1235 dbSNP
rs897471018 1242 dbSNP
rs1037967569 1243 dbSNP
rs1417922074 1247 dbSNP
rs1465568808 1253 dbSNP
rs942260919 1255 dbSNP
rs1400463851 1257 dbSNP
rs889311732 1264 dbSNP
rs547994884 1273 dbSNP
rs534403024 1274 dbSNP
rs1206578171 1278 dbSNP
rs1051029145 1281 dbSNP
rs565780411 1282 dbSNP
rs933424397 1284 dbSNP
rs1324529225 1286 dbSNP
rs923358306 1288 dbSNP
rs1301314632 1293 dbSNP
rs1367349013 1296 dbSNP
rs1315914319 1300 dbSNP
rs1299200626 1301 dbSNP
rs977463499 1303 dbSNP
rs1445014251 1305 dbSNP
rs1353312788 1306 dbSNP
rs548672342 1313 dbSNP
rs377552306 1314 dbSNP
rs914529642 1315 dbSNP
rs1465736004 1318 dbSNP
rs1443232483 1320 dbSNP
rs546420155 1321 dbSNP
rs1173820929 1323 dbSNP
rs989441945 1336 dbSNP
rs958176788 1345 dbSNP
rs1408471247 1355 dbSNP
rs1178777842 1356 dbSNP
rs1172072461 1358 dbSNP
rs1479599116 1361 dbSNP
rs144315164 1367 dbSNP
rs1198073715 1376 dbSNP
rs1423678283 1377 dbSNP
rs1466691449 1385 dbSNP
rs1170319968 1386 dbSNP
rs778059342 1387 dbSNP
rs926518316 1388 dbSNP
rs149591075 1392 dbSNP
rs754942602 1393 dbSNP
rs765135626 1398 dbSNP
rs980565879 1401 dbSNP
rs970503155 1404 dbSNP
rs1308122158 1405 dbSNP
rs1024684865 1410 dbSNP
rs993176597 1411 dbSNP
rs1319943415 1421 dbSNP
rs1231093429 1422 dbSNP
rs915623882 1426 dbSNP
rs1345975979 1452 dbSNP
rs1389567184 1460 dbSNP
rs1202457085 1462 dbSNP
rs1260055645 1462 dbSNP
rs1488189219 1462 dbSNP
rs1371800979 1463 dbSNP
rs1309193532 1467 dbSNP
rs1265913820 1472 dbSNP
rs1056883357 1480 dbSNP
rs868438169 1483 dbSNP
rs1376640569 1487 dbSNP
rs1466214197 1490 dbSNP
rs188614957 1491 dbSNP
rs752769773 1492 dbSNP
rs983027725 1498 dbSNP
rs952964188 1499 dbSNP
rs1298601949 1500 dbSNP
rs1342227190 1507 dbSNP
rs1385078482 1509 dbSNP
rs1300667902 1516 dbSNP
rs1331800119 1521 dbSNP
rs919912827 1523 dbSNP
rs765240503 1530 dbSNP
rs755171856 1533 dbSNP
rs975789788 1539 dbSNP
rs889357788 1545 dbSNP
rs1050665744 1569 dbSNP
rs1288607857 1573 dbSNP
rs997687127 1588 dbSNP
rs1008346661 1594 dbSNP
rs954542341 1598 dbSNP
rs1345458950 1602 dbSNP
rs1161012771 1603 dbSNP
rs182699542 1621 dbSNP
rs754379664 1629 dbSNP
rs1438703715 1632 dbSNP
rs998717647 1641 dbSNP
rs1041836900 1652 dbSNP
rs17690965 1659 dbSNP
rs1292904596 1673 dbSNP
rs1445269011 1679 dbSNP
rs761086689 1685 dbSNP
rs1181874943 1686 dbSNP
rs1376349843 1690 dbSNP
rs1483046898 1695 dbSNP
rs1241233134 1698 dbSNP
rs1012958995 1699 dbSNP
rs1054863397 1706 dbSNP
rs936637345 1717 dbSNP
rs1221337891 1719 dbSNP
rs1266497911 1720 dbSNP
rs564105945 1721 dbSNP
rs1489762191 1723 dbSNP
rs1214945480 1724 dbSNP
rs1235903041 1727 dbSNP
rs1457034837 1728 dbSNP
rs1178923910 1731 dbSNP
rs1409846889 1748 dbSNP
rs1218319669 1751 dbSNP
rs926543613 1753 dbSNP
rs1163829901 1763 dbSNP
rs980619554 1765 dbSNP
rs1057274575 1776 dbSNP
rs970545638 1783 dbSNP
rs541254973 1787 dbSNP
rs1047289856 1794 dbSNP
rs931480480 1799 dbSNP
rs971809182 1802 dbSNP
rs920147827 1808 dbSNP
rs1395010323 1814 dbSNP
rs1313889402 1818 dbSNP
rs962095791 1819 dbSNP
rs1217403373 1823 dbSNP
rs1290279603 1825 dbSNP
rs975699109 1826 dbSNP
rs369999536 1828 dbSNP
rs572415742 1832 dbSNP
rs1359695412 1837 dbSNP
rs1164075259 1844 dbSNP
rs1426446433 1845 dbSNP
rs912603451 1858 dbSNP
rs1015963972 1860 dbSNP
rs1006307044 1861 dbSNP
rs1181001501 1870 dbSNP
rs1433223804 1871 dbSNP
rs142497497 1881 dbSNP
rs1476138087 1883 dbSNP
rs1168505293 1896 dbSNP
rs373223477 1897 dbSNP
rs1466165097 1901 dbSNP
rs1172924498 1903 dbSNP
rs956817826 1905 dbSNP
rs11242126 1912 dbSNP
rs576040483 1914 dbSNP
rs74916395 1926 dbSNP
rs1381863222 1927 dbSNP
rs997739348 1936 dbSNP
rs968527820 1938 dbSNP
rs1278075785 1943 dbSNP
rs1341701880 1955 dbSNP
rs1218646323 1959 dbSNP
rs1274499592 1959 dbSNP
rs868044821 1982 dbSNP
rs902041724 1993 dbSNP
rs1310069357 1994 dbSNP
rs1041891231 2001 dbSNP
rs1010360785 2006 dbSNP
rs1021924786 2007 dbSNP
rs762525200 2007 dbSNP
rs77531068 2007 dbSNP
rs556182880 2008 dbSNP
rs1262314754 2012 dbSNP
rs1478109979 2021 dbSNP
rs893204222 2034 dbSNP
rs17690923 2042 dbSNP
rs1414104022 2045 dbSNP
rs759096141 2053 dbSNP
rs1035383805 2057 dbSNP
rs1485069764 2060 dbSNP
rs1002610244 2062 dbSNP
rs1223744615 2081 dbSNP
rs577498790 2112 dbSNP
rs554036070 2116 dbSNP
rs927295433 2125 dbSNP
rs1044988482 2133 dbSNP
rs534425538 2135 dbSNP
rs1271419209 2137 dbSNP
rs1307573220 2138 dbSNP
rs949283727 2144 dbSNP
rs1380191008 2158 dbSNP
rs1301478204 2181 dbSNP
rs1349620025 2182 dbSNP
rs1214095892 2183 dbSNP
rs931429535 2185 dbSNP
rs761518148 2190 dbSNP
rs1488570861 2192 dbSNP
rs560797037 2197 dbSNP
rs1217931273 2206 dbSNP
rs1245026771 2210 dbSNP
rs898698286 2222 dbSNP
rs1040358113 2223 dbSNP
rs1397055751 2233 dbSNP
rs1438067632 2234 dbSNP
rs1480762336 2235 dbSNP
rs942990189 2236 dbSNP
rs1406607490 2237 dbSNP
rs1361638300 2242 dbSNP
rs565591584 2248 dbSNP
rs940500369 2257 dbSNP
rs908958302 2258 dbSNP
rs776519953 2271 dbSNP
rs953176577 2275 dbSNP
rs1373744828 2277 dbSNP
rs148412631 2280 dbSNP
rs923991083 2284 dbSNP
rs1423262375 2290 dbSNP
rs776103248 2291 dbSNP
rs979496213 2303 dbSNP
rs768197971 2304 dbSNP
rs1308234596 2308 dbSNP
rs966281110 2309 dbSNP
rs1020501070 2310 dbSNP
rs1287588127 2317 dbSNP
rs1450975477 2321 dbSNP
rs761049387 2323 dbSNP
rs1397314058 2325 dbSNP
rs1222309415 2330 dbSNP
rs1255030894 2335 dbSNP
rs1456600247 2342 dbSNP
rs1010830112 2348 dbSNP
rs893267221 2351 dbSNP
rs1033531919 2354 dbSNP
rs1001611350 2356 dbSNP
rs1471338146 2358 dbSNP
rs1161843443 2364 dbSNP
rs905894494 2367 dbSNP
rs1413623806 2369 dbSNP
rs1035619600 2372 dbSNP
rs1438267955 2373 dbSNP
rs1396100877 2374 dbSNP
rs1224659205 2375 dbSNP
rs1257966383 2384 dbSNP
rs1336008610 2394 dbSNP
rs1002516987 2396 dbSNP
rs535584587 2404 dbSNP
rs1355546445 2407 dbSNP
rs1228874264 2410 dbSNP
rs1275101788 2414 dbSNP
rs1316186865 2416 dbSNP
rs1198122767 2421 dbSNP
rs569666136 2422 dbSNP
rs1225049230 2424 dbSNP
rs896414284 2433 dbSNP
rs777445965 2438 dbSNP
rs1036241783 2452 dbSNP
rs1237326209 2455 dbSNP
rs1018747189 2457 dbSNP
rs1473399865 2457 dbSNP
rs940537275 2458 dbSNP
rs909017617 2460 dbSNP
rs984976387 2464 dbSNP
rs931732639 2465 dbSNP
rs1423108246 2468 dbSNP
rs921638059 2471 dbSNP
rs975740102 2473 dbSNP
rs1376306862 2474 dbSNP
rs1339704260 2481 dbSNP
rs1415288639 2482 dbSNP
rs1295009959 2488 dbSNP
rs965669558 2490 dbSNP
rs1020553488 2492 dbSNP
rs989056062 2494 dbSNP
rs1341721243 2501 dbSNP
rs549830857 2504 dbSNP
rs1198999494 2511 dbSNP
rs112058399 2518 dbSNP
rs145403816 2522 dbSNP
rs1443316823 2523 dbSNP
rs1253365192 2529 dbSNP
rs1261588407 2533 dbSNP
rs1060980 2534 dbSNP
rs891355975 2542 dbSNP
rs564422478 2543 dbSNP
rs748318132 2546 dbSNP
rs1002062070 2549 dbSNP
rs1456935482 2550 dbSNP
rs1463177138 2550 dbSNP
rs1401090674 2551 dbSNP
rs905946924 2557 dbSNP
rs1435050032 2564 dbSNP
rs1024308556 2568 dbSNP
rs1314504383 2570 dbSNP
rs1263333583 2574 dbSNP
rs150074408 2580 dbSNP
rs1321037478 2583 dbSNP
rs1296361873 2604 dbSNP
rs190048812 2608 dbSNP
rs935302382 2616 dbSNP
rs1357375055 2619 dbSNP
rs1274000707 2620 dbSNP
rs897138332 2620 dbSNP
rs1348890991 2628 dbSNP
rs1213388270 2630 dbSNP
rs562002055 2642 dbSNP
rs541914288 2647 dbSNP
rs576178714 2648 dbSNP
rs1043784569 2650 dbSNP
rs1194610067 2654 dbSNP
rs753479660 2654 dbSNP
rs946843970 2654 dbSNP
rs1304797743 2658 dbSNP
rs868549858 2659 dbSNP
rs1399680921 2660 dbSNP
rs1337580380 2666 dbSNP
rs914374550 2667 dbSNP
rs139334750 2674 dbSNP
rs185408688 2675 dbSNP
rs376103073 2684 dbSNP
rs1172353643 2691 dbSNP
rs1387079780 2696 dbSNP
rs940605305 2697 dbSNP
rs887630814 2698 dbSNP
rs180748536 2699 dbSNP
rs928497338 2702 dbSNP
rs554448371 2704 dbSNP
rs190975173 2709 dbSNP
rs921689005 2716 dbSNP
rs771266570 2724 dbSNP
rs944375565 2725 dbSNP
rs912875113 2731 dbSNP
rs1207485058 2734 dbSNP
rs1251899873 2737 dbSNP
rs1025338472 2749 dbSNP
rs1195156448 2755 dbSNP
rs1278606894 2759 dbSNP
rs1378132496 2762 dbSNP
rs1277551231 2763 dbSNP
rs574966440 2767 dbSNP
rs1205441416 2771 dbSNP
rs989489523 2772 dbSNP
rs1159583382 2775 dbSNP
rs1283743104 2777 dbSNP
rs1365405298 2781 dbSNP
rs1463849207 2784 dbSNP
rs866588430 2785 dbSNP
rs1395370505 2791 dbSNP
rs749572666 2794 dbSNP
rs755081982 2795 dbSNP
rs1329509976 2796 dbSNP
rs980301758 2797 dbSNP
rs555364112 2808 dbSNP
rs1024361046 2809 dbSNP
rs1392267807 2815 dbSNP
rs1338912140 2816 dbSNP
rs1018461420 2821 dbSNP
rs1309609849 2821 dbSNP
rs1014264230 2824 dbSNP
rs1333761568 2824 dbSNP
rs1401611618 2825 dbSNP
rs961387405 2827 dbSNP
rs1271956228 2829 dbSNP
rs187328280 2830 dbSNP
rs1005248400 2831 dbSNP
rs1419599334 2833 dbSNP
rs4705963 2835 dbSNP
rs1386483751 2836 dbSNP
rs1252471524 2838 dbSNP
rs1421959537 2840 dbSNP
rs1049418203 2848 dbSNP
rs1186797387 2848 dbSNP
rs1463032905 2852 dbSNP
rs1168638060 2858 dbSNP
rs996014741 2869 dbSNP
rs1139660 2877 dbSNP
rs1040162978 2878 dbSNP
rs1139661 2879 dbSNP
rs944427466 2881 dbSNP
rs879136998 2882 dbSNP
rs1139663 2886 dbSNP
rs1139664 2887 dbSNP
rs556161740 2895 dbSNP
rs539442602 2896 dbSNP
rs1306551047 2897 dbSNP
rs1052777740 2899 dbSNP
rs570610485 2901 dbSNP
rs540631188 2905 dbSNP
rs17510339 2912 dbSNP
rs1293932693 2913 dbSNP
rs970213304 2914 dbSNP
rs1258066957 2915 dbSNP
rs981338350 2925 dbSNP
rs917402439 2927 dbSNP
rs951307315 2929 dbSNP
rs1062247 2930 dbSNP
rs1354373442 2930 dbSNP
rs992896922 2932 dbSNP
rs918521508 2935 dbSNP
rs751403052 2939 dbSNP
rs756710166 2942 dbSNP
rs567913810 2944 dbSNP
rs1398764184 2945 dbSNP
rs1275728182 2947 dbSNP
rs1360706603 2956 dbSNP
rs17539066 2960 dbSNP
rs1297211550 2963 dbSNP
rs1016046276 2985 dbSNP
rs1209802073 2986 dbSNP
rs1017991722 2992 dbSNP
rs1296736932 2996 dbSNP
rs1399848962 2998 dbSNP
rs1005560401 3001 dbSNP
rs1305490730 3002 dbSNP
rs952784669 3006 dbSNP
rs531656678 3011 dbSNP
rs1486603747 3012 dbSNP
rs1007088120 3016 dbSNP
rs376688663 3023 dbSNP
rs1241479158 3026 dbSNP
rs1486207930 3034 dbSNP
rs1188374832 3036 dbSNP
rs1423248697 3038 dbSNP
rs1403054059 3041 dbSNP
rs1454052840 3041 dbSNP
rs1174645567 3044 dbSNP
rs955533762 3047 dbSNP
rs1418371297 3050 dbSNP
rs1318198951 3053 dbSNP
rs1346326089 3060 dbSNP
rs1430745851 3067 dbSNP
rs1290119139 3070 dbSNP
rs1029806462 3076 dbSNP
rs1027593280 3082 dbSNP
rs574817802 3084 dbSNP
rs996068664 3085 dbSNP
rs999717937 3091 dbSNP
rs900368395 3092 dbSNP
rs1040226874 3096 dbSNP
rs776444088 3123 dbSNP
rs1468189933 3124 dbSNP
rs1194543942 3132 dbSNP
rs1192647303 3134 dbSNP
rs1010866571 3138 dbSNP
rs1438164756 3144 dbSNP
rs1490455681 3146 dbSNP
rs1270912033 3148 dbSNP
rs1158364673 3149 dbSNP
rs1219311977 3157 dbSNP
rs1451016885 3158 dbSNP
rs371630369 3159 dbSNP
rs1160636647 3166 dbSNP
rs866917537 3168 dbSNP
rs891549068 3174 dbSNP
rs895145933 3180 dbSNP
rs1053239785 3195 dbSNP
rs1444227088 3196 dbSNP
rs1278809586 3206 dbSNP
rs35538088 3209 dbSNP
rs939456624 3210 dbSNP
rs935697247 3211 dbSNP
rs1218337075 3216 dbSNP
rs1346571751 3217 dbSNP
rs1225446162 3229 dbSNP
rs1277067124 3232 dbSNP
rs1334197080 3234 dbSNP
rs866432761 3250 dbSNP
rs1214418151 3257 dbSNP
rs1434910680 3259 dbSNP
rs1456611447 3276 dbSNP
rs907022546 3281 dbSNP
rs1471429070 3286 dbSNP
rs879319919 3296 dbSNP
rs1417802907 3297 dbSNP
rs758059156 3298 dbSNP
rs1165017897 3302 dbSNP
rs1396220172 3310 dbSNP
rs1044655738 3313 dbSNP
rs530468254 3315 dbSNP
rs941031068 3316 dbSNP
rs974405880 3316 dbSNP
rs1354755370 3325 dbSNP
rs545743781 3329 dbSNP
rs1316279165 3333 dbSNP
rs1195493503 3344 dbSNP
rs563052233 3348 dbSNP
rs1189294032 3349 dbSNP
rs1477656700 3372 dbSNP
rs76111951 3376 dbSNP
rs147281506 3377 dbSNP
rs1475859871 3381 dbSNP
rs1188033424 3385 dbSNP
rs141835643 3389 dbSNP
rs1474202523 3393 dbSNP
rs952757507 3394 dbSNP
rs1396799805 3397 dbSNP
rs575059179 3400 dbSNP
rs1022510590 3407 dbSNP
rs1374770328 3408 dbSNP
rs1415387919 3420 dbSNP
rs1256347347 3426 dbSNP
rs759008276 3431 dbSNP
rs1198272630 3447 dbSNP
rs776144172 3448 dbSNP
rs974684547 3451 dbSNP
rs1303816337 3452 dbSNP
rs964612750 3454 dbSNP
rs1232545519 3456 dbSNP
rs111609523 3462 dbSNP
rs1280136512 3462 dbSNP
rs551903934 3462 dbSNP
rs77802045 3462 dbSNP
rs1444734260 3463 dbSNP
rs1191866964 3468 dbSNP
rs4705962 3468 dbSNP
rs1217900850 3471 dbSNP
rs1018837547 3476 dbSNP
rs1394306930 3479 dbSNP
rs760538618 3488 dbSNP
rs1314602914 3489 dbSNP
rs1382714521 3489 dbSNP
rs1174752884 3492 dbSNP
rs1319140589 3496 dbSNP
rs1280657912 3498 dbSNP
rs891598370 3501 dbSNP
rs544836218 3514 dbSNP
rs773270818 3537 dbSNP
rs576179078 3538 dbSNP
rs906593382 3541 dbSNP
rs1236980984 3544 dbSNP
rs904212542 3546 dbSNP
rs1330157388 3547 dbSNP
rs1047847639 3551 dbSNP
rs1204034954 3552 dbSNP
rs1044037567 3553 dbSNP
rs1261893774 3556 dbSNP
rs200610769 3569 dbSNP
rs929762644 3577 dbSNP
rs753523295 3584 dbSNP
rs897027356 3593 dbSNP
rs949007289 3596 dbSNP
rs896080862 3600 dbSNP
rs879312509 3601 dbSNP
rs1175288335 3603 dbSNP
rs368077504 3604 dbSNP
rs1361989079 3605 dbSNP
rs1453039064 3614 dbSNP
rs1167036466 3620 dbSNP
rs1159193842 3622 dbSNP
rs182390037 3625 dbSNP
rs17539072 3626 dbSNP
rs190156300 3632 dbSNP
rs184200202 3635 dbSNP
rs921296828 3636 dbSNP
rs1305400322 3640 dbSNP
rs1335676775 3650 dbSNP
rs80295611 3656 dbSNP
rs965330996 3662 dbSNP
rs1018888125 3663 dbSNP
rs987771868 3664 dbSNP
rs1258046608 3674 dbSNP
rs966842423 3676 dbSNP
rs1022924613 3681 dbSNP
rs568027506 3684 dbSNP
rs547950935 3686 dbSNP
rs1182382993 3690 dbSNP
rs531404133 3695 dbSNP
rs904269027 3698 dbSNP
rs1183491826 3699 dbSNP
rs1164314253 3704 dbSNP
rs1395491666 3708 dbSNP
rs1352202336 3712 dbSNP
rs1022629398 3713 dbSNP
rs559062921 3727 dbSNP
rs1380821717 3729 dbSNP
rs895456693 3731 dbSNP
rs1300721468 3741 dbSNP
rs1396281972 3751 dbSNP
rs1446969905 3767 dbSNP
rs959861462 3772 dbSNP
rs11545722 3786 dbSNP
rs1354130846 3789 dbSNP
rs1230917003 3790 dbSNP
rs1292198091 3794 dbSNP
rs1345587191 3802 dbSNP
rs1223366994 3805 dbSNP
rs748020598 3805 dbSNP
rs779243016 3813 dbSNP
rs1480157291 3816 dbSNP
rs568967901 3835 dbSNP
rs1057332234 3837 dbSNP
rs1160284942 3843 dbSNP
rs1417747781 3845 dbSNP
rs1379684215 3855 dbSNP
rs1158110291 3858 dbSNP
rs1003507697 3862 dbSNP
rs970726480 3864 dbSNP
rs552630133 3871 dbSNP
rs1026395615 3876 dbSNP
rs769027945 3895 dbSNP
rs1354187859 3898 dbSNP
rs896970667 3899 dbSNP
rs1300338069 3911 dbSNP
rs1004851702 3913 dbSNP
rs1180367962 3923 dbSNP
rs887309604 3925 dbSNP
rs1005395379 3926 dbSNP
rs1311708327 3929 dbSNP
rs1049029696 3930 dbSNP
rs1355493729 3936 dbSNP
rs931461236 3939 dbSNP
rs921359009 3945 dbSNP
rs1229556701 3950 dbSNP
rs1039783213 3954 dbSNP
rs1483076369 3966 dbSNP
rs944039579 3967 dbSNP
rs1243027988 3969 dbSNP
rs772629143 3977 dbSNP
rs1276587210 3979 dbSNP
rs749330878 3987 dbSNP
rs1484638842 3989 dbSNP
rs1049633793 3996 dbSNP
rs1258177000 4003 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' guggucgaucGGAGUGg 5'
                    |||||| 
Target 5' -------uuuCCUCACa 3'
 		1 - 10
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000378746.4 | 3UTR | UUUCCUCACAUUUACUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
74 hsa-miR-4316 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT080624 PMAIP1 phorbol-12-myristate-13-acetate-induced protein 1 2 2
MIRT095088 SEC24A SEC24 homolog A, COPII coat complex component 2 4
MIRT123331 CALU calumenin 2 2
MIRT154964 RRM2 ribonucleotide reductase regulatory subunit M2 2 2
MIRT370850 TGFBR2 transforming growth factor beta receptor 2 2 2
MIRT442955 SGCD sarcoglycan delta 2 2
MIRT448240 ZNF774 zinc finger protein 774 2 2
MIRT451710 OLR1 oxidized low density lipoprotein receptor 1 2 2
MIRT452072 ATP6V0B ATPase H+ transporting V0 subunit b 2 2
MIRT455665 GLO1 glyoxalase I 2 2
MIRT460354 TXNDC16 thioredoxin domain containing 16 2 2
MIRT461908 NECAB3 N-terminal EF-hand calcium binding protein 3 2 2
MIRT462047 HOXC13 homeobox C13 2 2
MIRT462735 EFNB1 ephrin B1 2 2
MIRT463409 ZC3HAV1L zinc finger CCCH-type containing, antiviral 1 like 2 2
MIRT464952 TWIST1 twist family bHLH transcription factor 1 2 2
MIRT465052 TSR1 TSR1, ribosome maturation factor 2 2
MIRT467549 SMARCD1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 2 4
MIRT470226 PRRC2A proline rich coiled-coil 2A 2 2
MIRT474081 LMBR1L limb development membrane protein 1 like 2 2
MIRT474481 KLHDC8B kelch domain containing 8B 2 2
MIRT474704 KIF3A kinesin family member 3A 2 2
MIRT474897 KCTD21 potassium channel tetramerization domain containing 21 2 2
MIRT475203 IL2RB interleukin 2 receptor subunit beta 2 2
MIRT477664 EFHD2 EF-hand domain family member D2 2 2
MIRT477775 E2F3 E2F transcription factor 3 2 2
MIRT477940 DPM2 dolichyl-phosphate mannosyltransferase subunit 2, regulatory 2 2
MIRT478224 DDX52 DExD-box helicase 52 2 2
MIRT479904 CCDC117 coiled-coil domain containing 117 2 2
MIRT480639 BSCL2 BSCL2, seipin lipid droplet biogenesis associated 2 2
MIRT482435 ADM adrenomedullin 2 10
MIRT483908 GNB1L G protein subunit beta 1 like 2 2
MIRT484161 FAM71B family with sequence similarity 71 member B 2 2
MIRT484405 SNX19 sorting nexin 19 2 2
MIRT485426 LASP1 LIM and SH3 protein 1 2 2
MIRT489788 KRT80 keratin 80 2 4
MIRT490813 ASB1 ankyrin repeat and SOCS box containing 1 2 4
MIRT491176 LAMA5 laminin subunit alpha 5 2 2
MIRT491573 HSDL1 hydroxysteroid dehydrogenase like 1 2 2
MIRT492633 PLXNA1 plexin A1 2 2
MIRT492984 NAV1 neuron navigator 1 2 2
MIRT496441 RAB11FIP4 RAB11 family interacting protein 4 2 2
MIRT501829 NCOA3 nuclear receptor coactivator 3 2 2
MIRT502165 KIAA0195 transmembrane protein 94 2 2
MIRT508652 DIABLO diablo IAP-binding mitochondrial protein 2 4
MIRT509554 ACTG1 actin gamma 1 2 4
MIRT520033 YOD1 YOD1 deubiquitinase 2 6
MIRT523969 DVL3 dishevelled segment polarity protein 3 2 2
MIRT526150 KIAA1456 KIAA1456 2 2
MIRT530330 ARHGAP1 Rho GTPase activating protein 1 2 2
MIRT539985 SLC24A4 solute carrier family 24 member 4 2 4
MIRT540851 NUP155 nucleoporin 155 2 2
MIRT542326 LIMD1 LIM domains containing 1 2 2
MIRT558908 CBX5 chromobox 5 2 2
MIRT563663 SMC4 structural maintenance of chromosomes 4 2 2
MIRT565433 SURF4 surfeit 4 2 2
MIRT567773 DGAT2 diacylglycerol O-acyltransferase 2 2 2
MIRT615573 NCS1 neuronal calcium sensor 1 2 2
MIRT627336 TTLL7 tubulin tyrosine ligase like 7 2 2
MIRT632965 EIF2S3 eukaryotic translation initiation factor 2 subunit gamma 2 2
MIRT634307 SNTN sentan, cilia apical structure protein 2 2
MIRT641569 RAX retina and anterior neural fold homeobox 2 2
MIRT660509 ARL5A ADP ribosylation factor like GTPase 5A 2 2
MIRT662703 C10orf111 chromosome 10 open reading frame 111 2 4
MIRT663214 ZNF277 zinc finger protein 277 2 2
MIRT665318 YIPF4 Yip1 domain family member 4 2 2
MIRT695264 CD209 CD209 molecule 2 2
MIRT696231 LIN9 lin-9 DREAM MuvB core complex component 2 2
MIRT698867 SRPR SRP receptor alpha subunit 2 2
MIRT702700 IPO9 importin 9 2 2
MIRT704236 DHDDS dehydrodolichyl diphosphate synthase subunit 2 2
MIRT704935 CCDC120 coiled-coil domain containing 120 2 2
MIRT724285 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT735579 VEGFA vascular endothelial growth factor A 3 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4316 Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-miR-4316 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4316 Docetaxel+Cisplatin+5-Fluorouracil resistant tissue (hypopharyngeal squamous cell carcinoma)

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