miRTarBase - #MIRT474922


—
pre-miRNA Information
pre-miRNA hsa-mir-3653   
Genomic Coordinates chr22: 29333158 - 29333267
Description Homo sapiens miR-3653 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3653-5p
Sequence 23| CCUCCUGAUGAUUCUUCUUC |42
Evidence Not_experimental
Experiments
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol KCTD20   
Synonyms C6orf69, dJ108K11.3
Description potassium channel tetramerization domain containing 20
Transcript NM_173562   
Expression
Putative miRNA Targets on KCTD20
3'UTR of KCTD20
(miRNA target sites are highlighted)		 
>KCTD20|NM_173562|3'UTR
   1 GGCCAGCTGTGGGTCTACTCCTTGTTGGAGCCCATCTCACCTGGGATGCCTGCAGCCAGCCCTCCCTCGTGATTTGTCTC
  81 ACCTTGAGTAGGAGACATGCTTCTCCCCTAACCTTTTCCTTTCTGCCATAATTAACATATGTCCTTTTCAGTAAGTCCAT
 161 GCCTCTGGCAGGGGATGAAGAAGTACTCACTGGTAATTAGCTACCATCTTTGCAGCAGCCCTGGTAACTTGAAAAATTTG
 241 GGTCTGGTGCTGTTCATTGAGTCTTTGTGTAACTGCAAAAGCAGGAAAGGAAGTCAAGACTCCTGTTGCCTCGTGCTTAG
 321 CAAAGCAGTCCTTATCCTTTATACTCTGTTCTTGGGTTTTGTTTTTGTCTTGTTTTATACCAGGCAAATTGCTTAGTAGC
 401 AAAGGGACCAAACTGAAAAGGTGACAATCTCTAACTTCTAAAAGCAGACACCAATCGGATGCTCATTAGAGGTTAATGAA
 481 GATGCCATTCTTGGTGGCCTCTGCACCCAAATTGCATCTGGAAAGAACTAGGGTCTCATTCAGAATGTCCAAAAGGAAAT
 561 TCTTAAGAGCTTAAATTCAGATTTGTGTCTCATTAATGCAGTGAACAATTCAAAACCACACAGATTCCTTGGCAGGAAGG
 641 ATAATGGAATAACAGTGTTGATGAGACCTTTTTAGCTTCAAGGTTTCGGAGTCTAAACAAATGGATGATTCATTTGGAAT
 721 GAAACTCACAATGCAAGTAGAAGGACCTCTCCAAATCAGGCCAGTTGGGTTATCCTGGCTTGGAATCTGGTGTGAAACCA
 801 TAGGTCTTAACACTCTGGAGCAGCACATTGCTGTGGATATGTCCAGGAGACCTTAGATATGGCTTAAAGGCTTTCAAGAT
 881 GAGGACAGAAATTGCTTACAATTGCTCAGTTTCTCAACAGAAAGACTCATAAGAGTGCCAGCATGGGGTACATGGAGTGA
 961 AGCTGGGTGGGAAGCATCATCTGCACAGTCCCTGTCCTAGTGCAGGACTTTTCTCTGTATGTTTTCATACCATGGGATTT
1041 TTGGATATCAGTGTATTTTGGTTCTTGAAATAGCCTAATAGCTGCTCACACATTGGGTAGGAATATTATACCAATGTCAT
1121 CCCCAAAGGAAGGGTGAGCTGAATGGAAATTAAGCCCAGTCATTTTATTTGATCTATTAGCTCTGTTATCAGTGCATGAT
1201 CACCCAGATCACCCTCCTCAGCCCACACAGTGCTGAACCATCTTCCCTCCTGTTCTCCATGGCTATTAATAGTATAGCTA
1281 AATTTAGAGTGCAGAGCCAGATATAAGTATTTTGGAATTATCTCCCAGTTTGTGGTAGAAGCTGACTGGAATACAGGTTG
1361 AGTATCTCTTATCCAAAATGCTAGGGACCAGAAAGGTTTCAGATTTTTTCAGATTTTGGAATACTTAACAGTTGAGCACC
1441 CCAAATCTGAAAGGCTTCTGAACGTCATGTCAGCACTCAAAAAAGTGGATTTTGGAGCACTTCAAATTTCGGATTTTTGG
1521 ATTTGGGATGCTCATCCTGTGTAGGAGAGGCTACTCGATTCCATTTAATGACTGTCCTAGTCATAATCATCCAAAGATAA
1601 AAGCCAGGTAGATGTTGAAAGCTCTTTCCAGGGCTGAAAAAGTGTTCTTACGTTCTCTGCATGTGACTAGCATCACTGTG
1681 GAAATTAATGCTCTGTTCTTCACTAGAATGTAGTAAGTGGTTAAACTGAGCTATCCCCCACCTGATGACTATTGGCATCC
1761 ATTTGCAAGGCCAATGGCCTGGATTAAGGGTTAGGATTATTTGTAGCTAGAAGGTAATTTTATTTCTGTGAAACTAATTG
1841 GCTCATATTTGAGGTTAGGTGTGGCCTTGACCTTACCAGTACATTTATACCCACTACCAGTTGACTAGCCCAGATAATTG
1921 TTAAATGGTGCTTCTTTTCTGCTTCTCAGTAGACTTCCATGCCATTACAAAGGAAATTTGAATTACCTAGTGTTTGTATA
2001 TTCCATGATAACTATGTATAACTTCTGTTACACAGCTTATGTATTGTTAACATTTAAGTGTAAACCATGCCACAGCTAAC
2081 ACTTAAAAATGAAAACTAATTAGTTCTTGCTTAGGGAAAATGCCAGGTATGAAGTATGGCATATACTTGACACTGTCCTG
2161 TGTAACCCTTTACTTTGCTCAGGCTTTCAAGATTGAGTCTTTTTTCCCCCAAATTAGGTTAACATGCATTTGACCCCAAC
2241 CTGTGGGGTTTGAGTAAGCTGGAAATCTGTGACGGTAGGCTTTCTAGTGTCACGAGGTGGTGGTGACTGAAGGAAAAGCT
2321 GGGATCACAGGTTCCTTCTGATGGAGAGGAAGGTTTATTTCTATGCCCCTCCCACCACCCTCCACCTAGAGCTCACCCAA
2401 GCCTGCTCCAGTCCCAGGGGCAGGCCATTCTGCAAAAGCAGGACCTCACAGAAACAAGGGCTGGGTTGAGGTCACCCCCT
2481 TCAGAGTTGGTTCCTGGCCAGATGGGTAAGAGGCATTTGTAATTTTAAAAATGTGAAACTTGGGTTTGGTGTTTTCTTCT
2561 AAGTGCCTAAATAAGCAAGCCAGGCTGTTGATATTTTAGCCAGAGAAATCGGCAAGCCAAGATTAACCCGAATCTGAAGT
2641 TTAGAATCTTGAGTTTGCATCTGCATCATATCATGCTGTTTTGATGAGGAAACATTTGCCACTGAGGAGTTGGAGGGAGG
2721 GCAAGACGACAGTGTTAAGTCAGATCATTTAATGGTTTCCCCTAAGCCCTGGAAAAATATTTGAAAGAATGGCAGCAAAA
2801 AGGTTAAGAAAGCAAGCCAGATTTACTGCACAATATGCAGTACCCAGTACTACTTTAAATCCCAAGAGAACAGTGTGATG
2881 TCTAATATATACAGGTCTATGAAAATACTGTGGAATAAGCCCAGGAAGGTTAGATGTGTTTGCAAATAAGTTGCCCAAAG
2961 GGTCCCCCTCTAAGTAAAACAAATATTCAGACCACAGGCTTTAATGTAAACTGTCAAAAAGTGGGATGTGGAGGATTTTT
3041 GTTAAGTGTCAATCGAAGTTAAAAAGCAAGGGTTTTTGGCCAGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGG
3121 AGGCCGAGGCCGGCAAATCACCTAAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAA
3201 AATACAAAAAAATTAGCCCGGTGTGGTGGCAAGTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAACTGCTT
3281 GAACCCGGGAGGTAGAGGTTGCAGTGAGCCACGATCATGCCACTGCACTCCAGCCTGGGCAACAGAGCAAGACTCCATCT
3361 CAAAAAAGAAAAAAAAAAATTAAAGGTTTTGGCTGGGTGCAGTGGCTCATGCCGGTAATCCCAGCACTTTGGGAGGCCAA
3441 GGTGGGAGGATCACTTGAGGTCAGGAGTTTCAGACTGGCCTGGGCAACGTAAAAAATTAAAAAAATAGCCAGGCATGGAC
3521 ATGGTAGTGCATACCTGTGGTCCCAGCCACTCAAGAGGCTGAGACAGGATGATTGCTTGAGCCCAGGAGGATGAGGCTGC
3601 AGTGAGCCATGATGACGCTACTGCACTCCAGCCTGGATGACAGGGCAAGACCCTGTCTCAATATTTTAAGTCAAGGGTTT
3681 GTAGTAATGTATTCAGTGCCACTTCTTGCCATCACTTTGCAATTATTGAAATGGGAATACTGAGCTCAGAAAGCAAATAT
3761 GATGCTTTCATGGGAGATGGAGCCACATTTGTGTTCTGGGTGGGATCACTAGTGCAGGAGAACATTACATTTTCTTCTGA
3841 AGGCAAAATGCTTGTAGGTTTTGCCTCTACTTTGTATTTACTTTTAAAATTGCACTTGTTCACCTACCAGTGTTTACGAA
3921 ATCCTGTATTTGGGATGCTTTTTCTATAATAAAATATTATAATTTGTGAAAAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cuUCUUCUUAGU-------AGUCCUCc 5'
            :|:||:||||       ||||||| 
Target 5' gtGGGAGGATCACTTGAGGTCAGGAGt 3'
 3442 - 3468 158.00 -18.51
2 
miRNA  3' cuucuucUUAGU-------AGUCCUCc 5'
                 |||||       ||||||| 
Target 5' gccggcaAATCACCTAAGGTCAGGAGt 3'
 3129 - 3155 145.00 -10.40
3 
miRNA  3' cuUCUUCUUAGU----A-GUCCUCc 5'
            :| :|:||||    | |||||| 
Target 5' tgGGTGGGATCACTAGTGCAGGAGa 3'
 3797 - 3821 124.00 -13.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26981171 12 COSMIC
COSN30183366 16 COSMIC
COSN30502777 22 COSMIC
COSN30183310 34 COSMIC
COSN30462943 34 COSMIC
COSN20044369 39 COSMIC
COSN31495665 81 COSMIC
COSN31499769 81 COSMIC
COSN30509733 97 COSMIC
COSN30475030 113 COSMIC
COSN30475069 114 COSMIC
COSN30484752 120 COSMIC
COSN30155957 124 COSMIC
COSN15321794 152 COSMIC
COSN6319537 275 COSMIC
COSN26557405 349 COSMIC
COSN31547480 382 COSMIC
COSN31519067 452 COSMIC
COSN8400635 689 COSMIC
COSN22730575 704 COSMIC
COSN6319538 825 COSMIC
COSN31578892 1575 COSMIC
COSN30174561 1618 COSMIC
COSN31610023 1687 COSMIC
COSN25289209 1776 COSMIC
COSN5087710 1812 COSMIC
COSN26679234 1815 COSMIC
COSN6319539 1836 COSMIC
COSN26554027 1860 COSMIC
COSN17037993 1866 COSMIC
COSN28793929 1914 COSMIC
COSN30175965 2066 COSMIC
COSN21102260 2189 COSMIC
COSN20102777 2532 COSMIC
COSN4955238 2595 COSMIC
COSN9906543 2621 COSMIC
COSN2160741 2643 COSMIC
COSN21320859 2770 COSMIC
COSN5629647 2887 COSMIC
COSN7789974 2899 COSMIC
COSN7871681 3099 COSMIC
COSN9781685 3618 COSMIC
COSN6319540 3727 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs561424946 3 dbSNP
rs1224695730 12 dbSNP
rs751376497 12 dbSNP
rs779422788 14 dbSNP
rs1313790705 15 dbSNP
rs376663385 16 dbSNP
rs150988872 18 dbSNP
rs1406724605 19 dbSNP
rs1450016094 22 dbSNP
rs775809236 24 dbSNP
rs763032359 34 dbSNP
rs768842843 35 dbSNP
rs1276616888 44 dbSNP
rs774293799 45 dbSNP
rs762452096 50 dbSNP
rs757480703 53 dbSNP
rs768117089 53 dbSNP
rs1372699221 59 dbSNP
rs1439883902 60 dbSNP
rs1461578380 62 dbSNP
rs896882002 69 dbSNP
rs958150159 70 dbSNP
rs1411348973 72 dbSNP
rs974879761 77 dbSNP
rs1291026607 81 dbSNP
rs761968775 85 dbSNP
rs1029491245 89 dbSNP
rs773550853 102 dbSNP
rs1291355786 108 dbSNP
rs987714109 114 dbSNP
rs369836426 119 dbSNP
rs953827386 128 dbSNP
rs1022199412 129 dbSNP
rs140813147 129 dbSNP
rs760899094 138 dbSNP
rs978772779 139 dbSNP
rs1282542233 141 dbSNP
rs1228845567 143 dbSNP
rs1337275635 145 dbSNP
rs1205008084 149 dbSNP
rs939630849 157 dbSNP
rs149808270 173 dbSNP
rs554876555 175 dbSNP
rs1391059320 177 dbSNP
rs1484236199 181 dbSNP
rs1196534915 182 dbSNP
rs146810219 190 dbSNP
rs1338786005 193 dbSNP
rs1237093693 198 dbSNP
rs956146386 201 dbSNP
rs931088278 215 dbSNP
rs1429286476 222 dbSNP
rs1160515937 224 dbSNP
rs1055346297 230 dbSNP
rs895007653 232 dbSNP
rs184519517 237 dbSNP
rs568339975 240 dbSNP
rs992991832 242 dbSNP
rs949254967 243 dbSNP
rs917417446 253 dbSNP
rs1256356438 258 dbSNP
rs1205076894 260 dbSNP
rs1459585128 264 dbSNP
rs1165103007 271 dbSNP
rs1262473489 296 dbSNP
rs1046287243 304 dbSNP
rs571195842 306 dbSNP
rs1209249439 307 dbSNP
rs948865467 313 dbSNP
rs1277585680 314 dbSNP
rs573739314 324 dbSNP
rs535208925 337 dbSNP
rs537478352 342 dbSNP
rs1044640666 344 dbSNP
rs1317422091 356 dbSNP
rs1450594442 357 dbSNP
rs1408152128 358 dbSNP
rs1321248127 367 dbSNP
rs1167880842 370 dbSNP
rs1370984151 372 dbSNP
rs557383950 378 dbSNP
rs999475731 380 dbSNP
rs1032344284 381 dbSNP
rs893874632 386 dbSNP
rs996246297 390 dbSNP
rs1185014860 393 dbSNP
rs376806830 396 dbSNP
rs1448221602 416 dbSNP
rs1242008727 422 dbSNP
rs553646195 424 dbSNP
rs866298957 449 dbSNP
rs1448663997 452 dbSNP
rs568554555 455 dbSNP
rs1359234442 457 dbSNP
rs1036696346 463 dbSNP
rs1294286143 476 dbSNP
rs1228392922 489 dbSNP
rs1244086957 495 dbSNP
rs896928553 501 dbSNP
rs1275931171 503 dbSNP
rs145634464 510 dbSNP
rs1209203385 511 dbSNP
rs545937298 513 dbSNP
rs1278311251 517 dbSNP
rs1050794768 522 dbSNP
rs988050071 528 dbSNP
rs1384147809 531 dbSNP
rs1006700816 534 dbSNP
rs1189807645 544 dbSNP
rs1240499546 545 dbSNP
rs1192356440 574 dbSNP
rs1015145293 579 dbSNP
rs1452062420 583 dbSNP
rs1022251835 585 dbSNP
rs1219897151 586 dbSNP
rs903752431 590 dbSNP
rs1275609259 591 dbSNP
rs1216475494 592 dbSNP
rs1448908322 605 dbSNP
rs749839463 606 dbSNP
rs1031664745 607 dbSNP
rs1347893466 614 dbSNP
rs1301679697 616 dbSNP
rs1404657835 619 dbSNP
rs1390737152 629 dbSNP
rs1364635604 634 dbSNP
rs956201182 640 dbSNP
rs557176047 642 dbSNP
rs575568783 645 dbSNP
rs188317039 650 dbSNP
rs1416800137 652 dbSNP
rs771146962 654 dbSNP
rs1166769241 659 dbSNP
rs1480727178 674 dbSNP
rs931035770 678 dbSNP
rs1431509649 684 dbSNP
rs992890509 688 dbSNP
rs990555449 689 dbSNP
rs916333763 696 dbSNP
rs949207731 706 dbSNP
rs1046667063 714 dbSNP
rs970228161 720 dbSNP
rs1219816341 730 dbSNP
rs1326296013 732 dbSNP
rs1281915337 733 dbSNP
rs902436217 734 dbSNP
rs1414744024 739 dbSNP
rs774786753 739 dbSNP
rs1443965520 740 dbSNP
rs980220873 744 dbSNP
rs1335771700 748 dbSNP
rs910163213 754 dbSNP
rs935273193 755 dbSNP
rs941611063 756 dbSNP
rs1431447509 760 dbSNP
rs746075921 766 dbSNP
rs893781011 767 dbSNP
rs1342962432 775 dbSNP
rs1174146988 778 dbSNP
rs1480013556 784 dbSNP
rs1408466502 801 dbSNP
rs1178682016 810 dbSNP
rs1433680550 813 dbSNP
rs973358845 814 dbSNP
rs1265413457 815 dbSNP
rs557618340 816 dbSNP
rs918263910 819 dbSNP
rs933623190 824 dbSNP
rs1309612562 827 dbSNP
rs772398428 828 dbSNP
rs114740687 838 dbSNP
rs1452788479 844 dbSNP
rs1434962158 851 dbSNP
rs1274644227 854 dbSNP
rs890547059 856 dbSNP
rs1346133549 882 dbSNP
rs1202440009 885 dbSNP
rs1345644890 887 dbSNP
rs41272166 887 dbSNP
rs1161036195 892 dbSNP
rs1398724317 893 dbSNP
rs115619866 896 dbSNP
rs962269097 916 dbSNP
rs1464574476 921 dbSNP
rs1184407856 931 dbSNP
rs1446619216 933 dbSNP
rs1209477347 940 dbSNP
rs1249906202 947 dbSNP
rs1486488251 958 dbSNP
rs529088018 967 dbSNP
rs1196655805 971 dbSNP
rs1316669818 974 dbSNP
rs1376919776 975 dbSNP
rs973677760 976 dbSNP
rs1031312229 980 dbSNP
rs1384486723 988 dbSNP
rs1312280081 991 dbSNP
rs1027920609 992 dbSNP
rs1451202606 992 dbSNP
rs952332782 1003 dbSNP
rs990894853 1008 dbSNP
rs1290555862 1018 dbSNP
rs916297592 1027 dbSNP
rs1451408795 1037 dbSNP
rs1174014056 1044 dbSNP
rs1344362867 1063 dbSNP
rs138179538 1079 dbSNP
rs1426793088 1082 dbSNP
rs1024366048 1087 dbSNP
rs1163071226 1087 dbSNP
rs1429192629 1104 dbSNP
rs1185262035 1110 dbSNP
rs1485802062 1113 dbSNP
rs981949271 1125 dbSNP
rs1270096530 1126 dbSNP
rs970111952 1133 dbSNP
rs1361170001 1134 dbSNP
rs1289126644 1137 dbSNP
rs923805644 1145 dbSNP
rs1307533949 1157 dbSNP
rs1297698778 1172 dbSNP
rs1017107840 1177 dbSNP
rs562457329 1184 dbSNP
rs963162097 1190 dbSNP
rs1320643467 1191 dbSNP
rs1364017868 1193 dbSNP
rs935179100 1196 dbSNP
rs1439414066 1197 dbSNP
rs1462601618 1199 dbSNP
rs1323441622 1202 dbSNP
rs1168374019 1204 dbSNP
rs1332089461 1209 dbSNP
rs575462420 1213 dbSNP
rs1202121402 1219 dbSNP
rs776502782 1220 dbSNP
rs1053609301 1222 dbSNP
rs868761165 1229 dbSNP
rs1208850038 1231 dbSNP
rs933675693 1240 dbSNP
rs1423174904 1262 dbSNP
rs1224537259 1271 dbSNP
rs1317281617 1275 dbSNP
rs986448702 1287 dbSNP
rs1225155900 1290 dbSNP
rs584196 1292 dbSNP
rs1229186708 1295 dbSNP
rs931969946 1304 dbSNP
rs1398829032 1305 dbSNP
rs1296539813 1308 dbSNP
rs149219470 1312 dbSNP
rs1467194268 1318 dbSNP
rs1407560026 1321 dbSNP
rs1208027240 1322 dbSNP
rs942420566 1326 dbSNP
rs1429053821 1328 dbSNP
rs1182897588 1329 dbSNP
rs1266556987 1333 dbSNP
rs1043832665 1342 dbSNP
rs1193639443 1357 dbSNP
rs1456906090 1358 dbSNP
rs890540364 1363 dbSNP
rs903688673 1364 dbSNP
rs1205503912 1365 dbSNP
rs1321279764 1373 dbSNP
rs1274037995 1374 dbSNP
rs1409403904 1380 dbSNP
rs571157972 1383 dbSNP
rs1305131375 1389 dbSNP
rs1446187422 1392 dbSNP
rs750297517 1392 dbSNP
rs1383589275 1393 dbSNP
rs1468731502 1397 dbSNP
rs528832695 1397 dbSNP
rs1402048282 1403 dbSNP
rs995021763 1414 dbSNP
rs1413618101 1420 dbSNP
rs1455668727 1421 dbSNP
rs1365223415 1426 dbSNP
rs541994194 1430 dbSNP
rs1179194528 1432 dbSNP
rs766180546 1452 dbSNP
rs751078583 1464 dbSNP
rs1162075831 1465 dbSNP
rs143379877 1469 dbSNP
rs1459938991 1473 dbSNP
rs1014248056 1474 dbSNP
rs1027868203 1474 dbSNP
rs1392122289 1479 dbSNP
rs1388967128 1489 dbSNP
rs1205571095 1493 dbSNP
rs1352537586 1498 dbSNP
rs1259235441 1506 dbSNP
rs867541021 1511 dbSNP
rs1045699169 1512 dbSNP
rs1011906300 1519 dbSNP
rs1317270702 1520 dbSNP
rs1450525622 1525 dbSNP
rs148359571 1529 dbSNP
rs1340468050 1532 dbSNP
rs905836555 1532 dbSNP
rs116361783 1533 dbSNP
rs970490319 1537 dbSNP
rs535690470 1544 dbSNP
rs923711153 1555 dbSNP
rs1385413901 1556 dbSNP
rs562076149 1557 dbSNP
rs1266064660 1558 dbSNP
rs1236878573 1559 dbSNP
rs1356967423 1575 dbSNP
rs557395055 1585 dbSNP
rs962925301 1590 dbSNP
rs1211503755 1602 dbSNP
rs1215539844 1610 dbSNP
rs1360511291 1610 dbSNP
rs994732316 1616 dbSNP
rs989283150 1634 dbSNP
rs955606221 1636 dbSNP
rs915153132 1639 dbSNP
rs1249420508 1649 dbSNP
rs41272168 1652 dbSNP
rs879068778 1653 dbSNP
rs539802058 1654 dbSNP
rs1253553368 1655 dbSNP
rs1405924601 1656 dbSNP
rs1365885247 1660 dbSNP
rs925011128 1663 dbSNP
rs1403148348 1664 dbSNP
rs1186233951 1666 dbSNP
rs767409150 1667 dbSNP
rs1476355014 1685 dbSNP
rs1421373690 1686 dbSNP
rs1192755195 1687 dbSNP
rs757851481 1689 dbSNP
rs1271382080 1690 dbSNP
rs1052695211 1696 dbSNP
rs1173285693 1706 dbSNP
rs917865488 1710 dbSNP
rs1273805461 1712 dbSNP
rs1035555113 1714 dbSNP
rs1278122008 1714 dbSNP
rs373483243 1720 dbSNP
rs772485000 1727 dbSNP
rs1001914703 1728 dbSNP
rs746293761 1734 dbSNP
rs1038485319 1735 dbSNP
rs1348871229 1736 dbSNP
rs1370381271 1737 dbSNP
rs1328964064 1740 dbSNP
rs898557676 1743 dbSNP
rs944736689 1744 dbSNP
rs1169843112 1752 dbSNP
rs1480693809 1759 dbSNP
rs1431198565 1775 dbSNP
rs1430777806 1776 dbSNP
rs1310182692 1781 dbSNP
rs772154711 1783 dbSNP
rs1036423541 1796 dbSNP
rs557777737 1805 dbSNP
rs1377281165 1812 dbSNP
rs897914163 1813 dbSNP
rs377652608 1818 dbSNP
rs1025811529 1826 dbSNP
rs994970742 1827 dbSNP
rs1049292393 1828 dbSNP
rs78681960 1829 dbSNP
rs1008487011 1837 dbSNP
rs1013615603 1839 dbSNP
rs1018515071 1847 dbSNP
rs1341311614 1848 dbSNP
rs1205649944 1855 dbSNP
rs1374043240 1867 dbSNP
rs1330038459 1870 dbSNP
rs180680530 1872 dbSNP
rs1408129444 1887 dbSNP
rs1024574424 1899 dbSNP
rs369461736 1901 dbSNP
rs147178378 1907 dbSNP
rs1180913637 1914 dbSNP
rs1438012418 1915 dbSNP
rs544111711 1916 dbSNP
rs1237681716 1921 dbSNP
rs1256334819 1931 dbSNP
rs138715941 1934 dbSNP
rs1187284787 1940 dbSNP
rs142728918 1946 dbSNP
rs956650713 1950 dbSNP
rs1209906579 1960 dbSNP
rs1317872504 1962 dbSNP
rs1286721203 1964 dbSNP
rs1450598885 1974 dbSNP
rs1350962569 1979 dbSNP
rs956491547 1981 dbSNP
rs989273337 1984 dbSNP
rs1307911902 1990 dbSNP
rs1170885897 2000 dbSNP
rs1452706533 2005 dbSNP
rs543062703 2007 dbSNP
rs1384984493 2013 dbSNP
rs915097799 2015 dbSNP
rs1465782937 2016 dbSNP
rs185783999 2019 dbSNP
rs917749429 2026 dbSNP
rs147352465 2032 dbSNP
rs1044976910 2034 dbSNP
rs986422930 2034 dbSNP
rs768664484 2036 dbSNP
rs1446487045 2042 dbSNP
rs1254747266 2047 dbSNP
rs1181810790 2051 dbSNP
rs944663658 2052 dbSNP
rs1486456097 2055 dbSNP
rs926530976 2061 dbSNP
rs2146333 2067 dbSNP
rs117232101 2081 dbSNP
rs1297527669 2082 dbSNP
rs1038776819 2086 dbSNP
rs898615079 2094 dbSNP
rs748783153 2096 dbSNP
rs532245941 2097 dbSNP
rs930059521 2097 dbSNP
rs551954488 2102 dbSNP
rs371046229 2104 dbSNP
rs1209031293 2128 dbSNP
rs1397899056 2130 dbSNP
rs1256198307 2131 dbSNP
rs879443435 2148 dbSNP
rs1303960469 2156 dbSNP
rs1426730374 2161 dbSNP
rs1366828155 2163 dbSNP
rs1047139790 2169 dbSNP
rs1164088861 2172 dbSNP
rs1484003492 2179 dbSNP
rs1206320779 2182 dbSNP
rs1422250747 2189 dbSNP
rs559522256 2189 dbSNP
rs891319102 2194 dbSNP
rs930754019 2196 dbSNP
rs1008386922 2197 dbSNP
rs1018560859 2198 dbSNP
rs1262086566 2198 dbSNP
rs761650110 2198 dbSNP
rs1049245157 2200 dbSNP
rs1263173044 2200 dbSNP
rs1489236884 2200 dbSNP
rs894607357 2202 dbSNP
rs948933344 2204 dbSNP
rs900081265 2206 dbSNP
rs1308067802 2210 dbSNP
rs1280015554 2211 dbSNP
rs1000570956 2218 dbSNP
rs1339618696 2224 dbSNP
rs1032429056 2226 dbSNP
rs139003984 2229 dbSNP
rs1423593308 2240 dbSNP
rs149962234 2246 dbSNP
rs1462556098 2247 dbSNP
rs1356830204 2264 dbSNP
rs1177119145 2265 dbSNP
rs1379620534 2272 dbSNP
rs79015072 2274 dbSNP
rs772858692 2275 dbSNP
rs892199668 2277 dbSNP
rs1389451723 2280 dbSNP
rs980555917 2284 dbSNP
rs1290521845 2285 dbSNP
rs1434559095 2288 dbSNP
rs190108088 2295 dbSNP
rs766305108 2304 dbSNP
rs926583462 2332 dbSNP
rs548391206 2338 dbSNP
rs1301675303 2343 dbSNP
rs751203351 2347 dbSNP
rs1317152431 2349 dbSNP
rs1263543052 2350 dbSNP
rs1235120318 2360 dbSNP
rs1329632141 2364 dbSNP
rs1325254449 2369 dbSNP
rs1392082003 2377 dbSNP
rs1379243521 2381 dbSNP
rs1329353485 2383 dbSNP
rs1465570361 2386 dbSNP
rs539588949 2398 dbSNP
rs1407407748 2402 dbSNP
rs1191 2403 dbSNP
rs1464856812 2407 dbSNP
rs537294917 2409 dbSNP
rs953308307 2410 dbSNP
rs1419259121 2414 dbSNP
rs1218608590 2417 dbSNP
rs1176170547 2420 dbSNP
rs1245463501 2422 dbSNP
rs144130088 2425 dbSNP
rs1019242931 2428 dbSNP
rs1243668559 2441 dbSNP
rs1202003303 2449 dbSNP
rs1488417607 2450 dbSNP
rs1192144410 2454 dbSNP
rs965985538 2456 dbSNP
rs1240073838 2458 dbSNP
rs1356045510 2465 dbSNP
rs1307198306 2470 dbSNP
rs1471765666 2471 dbSNP
rs1384269532 2478 dbSNP
rs533955491 2479 dbSNP
rs1336688285 2482 dbSNP
rs1394706468 2498 dbSNP
rs972057064 2513 dbSNP
rs1159439816 2516 dbSNP
rs1419943774 2517 dbSNP
rs1047192095 2518 dbSNP
rs1156371837 2520 dbSNP
rs1412842302 2521 dbSNP
rs1438503681 2525 dbSNP
rs145502210 2527 dbSNP
rs1189559891 2528 dbSNP
rs1162704378 2531 dbSNP
rs1255225431 2532 dbSNP
rs1061632 2533 dbSNP
rs374999674 2533 dbSNP
rs181698554 2542 dbSNP
rs944225968 2545 dbSNP
rs1347149379 2548 dbSNP
rs930644422 2565 dbSNP
rs1039887117 2568 dbSNP
rs1285987674 2571 dbSNP
rs1243257116 2573 dbSNP
rs899963746 2577 dbSNP
rs1319459398 2579 dbSNP
rs1402234262 2581 dbSNP
rs1362106021 2586 dbSNP
rs538038225 2591 dbSNP
rs1295936022 2592 dbSNP
rs1418660600 2596 dbSNP
rs1390870799 2601 dbSNP
rs984851115 2609 dbSNP
rs114117623 2611 dbSNP
rs1471779407 2612 dbSNP
rs1367809292 2617 dbSNP
rs1224991417 2625 dbSNP
rs757685209 2630 dbSNP
rs577777374 2631 dbSNP
rs1045935342 2632 dbSNP
rs1490555273 2635 dbSNP
rs1222930543 2639 dbSNP
rs1009172891 2659 dbSNP
rs1294487483 2659 dbSNP
rs1220895252 2663 dbSNP
rs1024704272 2664 dbSNP
rs970450765 2666 dbSNP
rs1399019568 2668 dbSNP
rs1350053786 2669 dbSNP
rs1325023491 2670 dbSNP
rs1181786594 2672 dbSNP
rs907447613 2677 dbSNP
rs1389976577 2682 dbSNP
rs750926228 2685 dbSNP
rs1052035261 2686 dbSNP
rs963203669 2693 dbSNP
rs545077526 2694 dbSNP
rs560310738 2695 dbSNP
rs1196893029 2706 dbSNP
rs892101284 2711 dbSNP
rs1180202038 2712 dbSNP
rs1010544934 2716 dbSNP
rs1201105379 2718 dbSNP
rs148672294 2728 dbSNP
rs1404754864 2729 dbSNP
rs1165393301 2732 dbSNP
rs919153221 2735 dbSNP
rs570048057 2756 dbSNP
rs1367956225 2763 dbSNP
rs1276219373 2773 dbSNP
rs1433738904 2773 dbSNP
rs1367258260 2779 dbSNP
rs888878135 2781 dbSNP
rs1427557692 2793 dbSNP
rs1307126437 2799 dbSNP
rs982777575 2800 dbSNP
rs771260019 2806 dbSNP
rs1350734196 2810 dbSNP
rs1007796281 2823 dbSNP
rs1018818845 2828 dbSNP
rs965933743 2833 dbSNP
rs1414792708 2845 dbSNP
rs971946079 2856 dbSNP
rs186868486 2857 dbSNP
rs562385153 2866 dbSNP
rs1427582180 2872 dbSNP
rs529606488 2876 dbSNP
rs1171055617 2880 dbSNP
rs1443849996 2881 dbSNP
rs1238867755 2882 dbSNP
rs1180527340 2887 dbSNP
rs553217551 2889 dbSNP
rs1026254018 2892 dbSNP
rs944111561 2895 dbSNP
rs1039768624 2897 dbSNP
rs1276888617 2898 dbSNP
rs373918968 2901 dbSNP
rs1217150716 2903 dbSNP
rs1343774653 2906 dbSNP
rs1281979917 2907 dbSNP
rs1309424878 2907 dbSNP
rs192113611 2919 dbSNP
rs368401639 2921 dbSNP
rs1374624015 2923 dbSNP
rs562903104 2936 dbSNP
rs184010871 2947 dbSNP
rs1360711850 2948 dbSNP
rs1229432768 2953 dbSNP
rs1331874901 2964 dbSNP
rs551436189 2966 dbSNP
rs1414135901 2972 dbSNP
rs984818063 2983 dbSNP
rs1160605366 2986 dbSNP
rs1437876209 2987 dbSNP
rs1054473100 2993 dbSNP
rs892702243 2994 dbSNP
rs1484503095 2996 dbSNP
rs1236093997 3002 dbSNP
rs113994697 3015 dbSNP
rs1204927124 3020 dbSNP
rs970208936 3024 dbSNP
rs1241746944 3030 dbSNP
rs1350887494 3034 dbSNP
rs533908341 3035 dbSNP
rs142177382 3044 dbSNP
rs202244024 3044 dbSNP
rs71675708 3045 dbSNP
rs57672766 3048 dbSNP
rs1001912764 3053 dbSNP
rs1361461829 3055 dbSNP
rs549009837 3056 dbSNP
rs1418044186 3069 dbSNP
rs963558484 3085 dbSNP
rs146829680 3087 dbSNP
rs768930521 3092 dbSNP
rs536358084 3098 dbSNP
rs556425396 3099 dbSNP
rs1478339974 3103 dbSNP
rs1265729612 3110 dbSNP
rs1167740656 3112 dbSNP
rs1026687955 3117 dbSNP
rs1259640002 3118 dbSNP
rs1411370646 3118 dbSNP
rs769583857 3124 dbSNP
rs1331751869 3126 dbSNP
rs773542262 3127 dbSNP
rs1448147411 3131 dbSNP
rs1316478095 3132 dbSNP
rs946350592 3133 dbSNP
rs1228242652 3134 dbSNP
rs1398392350 3137 dbSNP
rs1298880994 3139 dbSNP
rs1043432905 3142 dbSNP
rs950604466 3144 dbSNP
rs571325861 3147 dbSNP
rs888859064 3148 dbSNP
rs1459478189 3154 dbSNP
rs188597963 3155 dbSNP
rs1007333089 3158 dbSNP
rs1426237736 3159 dbSNP
rs1260609283 3175 dbSNP
rs987352181 3175 dbSNP
rs773157503 3177 dbSNP
rs1489163199 3178 dbSNP
rs1263113661 3179 dbSNP
rs1213029123 3181 dbSNP
rs1278161388 3182 dbSNP
rs1318433319 3182 dbSNP
rs912569717 3189 dbSNP
rs901654015 3190 dbSNP
rs113707520 3196 dbSNP
rs1365622966 3204 dbSNP
rs1463533473 3206 dbSNP
rs975914065 3212 dbSNP
rs921343428 3213 dbSNP
rs1026203456 3214 dbSNP
rs936857336 3216 dbSNP
rs1053958109 3220 dbSNP
rs951977805 3221 dbSNP
rs535013259 3224 dbSNP
rs1476256818 3229 dbSNP
rs1176361721 3230 dbSNP
rs1328165833 3243 dbSNP
rs1170541518 3247 dbSNP
rs1424063390 3258 dbSNP
rs1022991956 3260 dbSNP
rs542642910 3270 dbSNP
rs945641313 3272 dbSNP
rs1192400270 3276 dbSNP
rs1458206768 3286 dbSNP
rs554308463 3287 dbSNP
rs763247537 3288 dbSNP
rs1321777518 3290 dbSNP
rs1046593131 3294 dbSNP
rs770788131 3298 dbSNP
rs189808948 3300 dbSNP
rs928739944 3302 dbSNP
rs1240956653 3307 dbSNP
rs1328612256 3308 dbSNP
rs1434791543 3310 dbSNP
rs1223322626 3312 dbSNP
rs956166860 3313 dbSNP
rs1274590128 3314 dbSNP
rs1403396599 3322 dbSNP
rs1304894697 3325 dbSNP
rs1467276008 3327 dbSNP
rs988945913 3328 dbSNP
rs1172551466 3331 dbSNP
rs1262490869 3338 dbSNP
rs914816616 3340 dbSNP
rs947701306 3341 dbSNP
rs1266387712 3344 dbSNP
rs1437092862 3358 dbSNP
rs1055313177 3362 dbSNP
rs898911006 3368 dbSNP
rs1279845233 3369 dbSNP
rs59123927 3369 dbSNP
rs796895967 3369 dbSNP
rs995112017 3369 dbSNP
rs750320419 3377 dbSNP
rs755870302 3380 dbSNP
rs1043766966 3387 dbSNP
rs1208081824 3391 dbSNP
rs1238970831 3398 dbSNP
rs1341537398 3401 dbSNP
rs182102960 3407 dbSNP
rs1448619138 3413 dbSNP
rs563220570 3414 dbSNP
rs533316916 3415 dbSNP
rs901601778 3416 dbSNP
rs1361899480 3419 dbSNP
rs1156242770 3424 dbSNP
rs12665037 3425 dbSNP
rs1469615403 3425 dbSNP
rs993324318 3428 dbSNP
rs1409183823 3439 dbSNP
rs1456228996 3441 dbSNP
rs759252044 3443 dbSNP
rs1256483193 3446 dbSNP
rs887672987 3457 dbSNP
rs1489355824 3458 dbSNP
rs1283995679 3472 dbSNP
rs187157917 3479 dbSNP
rs1006164053 3485 dbSNP
rs975419499 3486 dbSNP
rs191590961 3489 dbSNP
rs1385530030 3490 dbSNP
rs1323379172 3491 dbSNP
rs1355256616 3499 dbSNP
rs614702 3500 dbSNP
rs970063224 3510 dbSNP
rs1400241549 3523 dbSNP
rs1341972710 3526 dbSNP
rs1003290165 3533 dbSNP
rs1423575255 3534 dbSNP
rs1035704275 3540 dbSNP
rs943531629 3542 dbSNP
rs774834277 3544 dbSNP
rs1286656995 3559 dbSNP
rs956160119 3574 dbSNP
rs1350047722 3594 dbSNP
rs760192377 3598 dbSNP
rs553167376 3599 dbSNP
rs144243742 3605 dbSNP
rs969363294 3614 dbSNP
rs1137628 3617 dbSNP
rs911466191 3618 dbSNP
rs531751802 3627 dbSNP
rs982342160 3636 dbSNP
rs943014771 3637 dbSNP
rs375343982 3647 dbSNP
rs937703288 3655 dbSNP
rs1259174193 3661 dbSNP
rs1288967591 3662 dbSNP
rs1417615459 3665 dbSNP
rs1319605482 3667 dbSNP
rs1054790238 3672 dbSNP
rs188627046 3677 dbSNP
rs1331214058 3678 dbSNP
rs929062068 3680 dbSNP
rs1201199262 3683 dbSNP
rs1249194430 3684 dbSNP
rs1438642248 3685 dbSNP
rs1393629677 3687 dbSNP
rs1171213163 3691 dbSNP
rs1466965183 3696 dbSNP
rs930413148 3700 dbSNP
rs62402192 3701 dbSNP
rs886284187 3714 dbSNP
rs1379454698 3716 dbSNP
rs146553478 3727 dbSNP
rs1456900425 3734 dbSNP
rs140927318 3736 dbSNP
rs1239287325 3747 dbSNP
rs1200970167 3750 dbSNP
rs1044283009 3755 dbSNP
rs997291217 3759 dbSNP
rs1213633609 3761 dbSNP
rs1028333794 3765 dbSNP
rs958242715 3766 dbSNP
rs565771155 3767 dbSNP
rs1231441572 3771 dbSNP
rs989598477 3787 dbSNP
rs1331934426 3792 dbSNP
rs1448847751 3794 dbSNP
rs1426970001 3812 dbSNP
rs905785257 3813 dbSNP
rs1002869647 3815 dbSNP
rs755166815 3816 dbSNP
rs928252897 3816 dbSNP
rs781514304 3820 dbSNP
rs1306513947 3821 dbSNP
rs1370186425 3822 dbSNP
rs1453844735 3824 dbSNP
rs150278254 3843 dbSNP
rs991439749 3845 dbSNP
rs1468995715 3851 dbSNP
rs1232678402 3855 dbSNP
rs756166928 3871 dbSNP
rs1021677887 3882 dbSNP
rs1442714957 3894 dbSNP
rs1281987604 3909 dbSNP
rs1208170637 3910 dbSNP
rs1338775099 3911 dbSNP
rs138941886 3913 dbSNP
rs986039704 3918 dbSNP
rs1018519275 3919 dbSNP
rs753288666 3931 dbSNP
rs1448441582 3932 dbSNP
rs575921616 3942 dbSNP
rs1311314089 3955 dbSNP
rs1434299015 3958 dbSNP
rs1361253832 3967 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' cuucuucuuaguaGUCCUCc 5'
                       |||||| 
Target 5' ----------aggCAGGAGa 3'
 		1 - 10
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HCT116
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in ERX177620. RNA binding protein: AGO2. Condition:p53_V_AGO_CLIP_3_10 ...

- Krell J; Stebbing J; Carissimi C; Dabrowska et al., 2016, Genome research.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' cuUCUUCUUAGU-AGUCCUCc 5'
            :|:||: | |  |||||| 
Target 5' uuGGGAGGCUGAGGCAGGAGa 3'
 		1 - 21
Article - Krell J; Stebbing J; Carissimi C; Dabrowska et al.
- Genome research, 2016
DNA damage activates TP53-regulated surveillance mechanisms that are crucial in suppressing tumorigenesis. TP53 orchestrates these responses directly by transcriptionally modulating genes, including microRNAs (miRNAs), and by regulating miRNA biogenesis through interacting with the DROSHA complex. However, whether the association between miRNAs and AGO2 is regulated following DNA damage is not yet known. Here, we show that, following DNA damage, TP53 interacts with AGO2 to induce or reduce AGO2's association of a subset of miRNAs, including multiple let-7 family members. Furthermore, we show that specific mutations in TP53 decrease rather than increase the association of let-7 family miRNAs, reducing their activity without preventing TP53 from interacting with AGO2. This is consistent with the oncogenic properties of these mutants. Using AGO2 RIP-seq and PAR-CLIP-seq, we show that the DNA damage-induced increase in binding of let-7 family members to the RISC complex is functional. We unambiguously determine the global miRNA-mRNA interaction networks involved in the DNA damage response, validating them through the identification of miRNA-target chimeras formed by endogenous ligation reactions. We find that the target complementary region of the let-7 seed tends to have highly fixed positions and more variable ones. Additionally, we observe that miRNAs, whose cellular abundance or differential association with AGO2 is regulated by TP53, are involved in an intricate network of regulatory feedback and feedforward circuits. TP53-mediated regulation of AGO2-miRNA interaction represents a new mechanism of miRNA regulation in carcinogenesis.
LinkOut: [PMID: 26701625]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000373731.2 | 3UTR | AGGCAGGAGAACUGCUUGAACCCG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
543 hsa-miR-3653-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT118037 SLC1A5 solute carrier family 1 member 5 2 2
MIRT134378 E2F2 E2F transcription factor 2 2 2
MIRT171365 PHTF2 putative homeodomain transcription factor 2 2 2
MIRT174716 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 2
MIRT250468 NFATC2IP nuclear factor of activated T-cells 2 interacting protein 2 2
MIRT261002 HIF1AN hypoxia inducible factor 1 alpha subunit inhibitor 2 4
MIRT306045 SKIL SKI like proto-oncogene 2 4
MIRT352741 CSNK1E casein kinase 1 epsilon 2 2
MIRT380445 SLC2A1 solute carrier family 2 member 1 2 2
MIRT442181 SRP68 signal recognition particle 68 2 6
MIRT448534 RIMS4 regulating synaptic membrane exocytosis 4 2 2
MIRT451362 UQCR11 ubiquinol-cytochrome c reductase, complex III subunit XI 2 2
MIRT451444 ZNF556 zinc finger protein 556 2 4
MIRT452667 PPIA peptidylprolyl isomerase A 2 2
MIRT458768 CES2 carboxylesterase 2 2 2
MIRT460268 SLC26A2 solute carrier family 26 member 2 2 2
MIRT460535 TM4SF5 transmembrane 4 L six family member 5 2 2
MIRT460602 FEM1A fem-1 homolog A 2 4
MIRT463622 YY1 YY1 transcription factor 2 2
MIRT473708 MAPK1 mitogen-activated protein kinase 1 2 6
MIRT474922 KCTD20 potassium channel tetramerization domain containing 20 2 2
MIRT478532 CTNS cystinosin, lysosomal cystine transporter 2 2
MIRT482760 TMEM126B transmembrane protein 126B 2 2
MIRT491029 FDX1 ferredoxin 1 2 4
MIRT492753 PER1 period circadian clock 1 2 8
MIRT494140 CTC1 CST telomere replication complex component 1 2 10
MIRT497863 UBA5 ubiquitin like modifier activating enzyme 5 2 4
MIRT512405 CD84 CD84 molecule 2 2
MIRT512529 ATCAY ATCAY, caytaxin 2 4
MIRT513039 BRIX1 BRX1, biogenesis of ribosomes 2 2
MIRT517888 SSTR2 somatostatin receptor 2 2 2
MIRT520420 TXNL1 thioredoxin like 1 2 6
MIRT521826 POLR1D RNA polymerase I subunit D 2 2
MIRT534072 SRPK1 SRSF protein kinase 1 2 2
MIRT534240 SLC23A1 solute carrier family 23 member 1 2 2
MIRT538794 C3orf52 chromosome 3 open reading frame 52 2 2
MIRT538980 BCL2L2 BCL2 like 2 2 2
MIRT542111 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 4
MIRT546462 SLC39A14 solute carrier family 39 member 14 2 2
MIRT552217 SSPN sarcospan 2 2
MIRT552224 NDUFS1 NADH:ubiquinone oxidoreductase core subunit S1 2 2
MIRT554420 SATB2 SATB homeobox 2 2 2
MIRT555385 PPP1CC protein phosphatase 1 catalytic subunit gamma 2 2
MIRT569625 MPRIP myosin phosphatase Rho interacting protein 2 2
MIRT573895 MKI67 marker of proliferation Ki-67 2 2
MIRT575161 Fam120c family with sequence similarity 120, member C 2 2
MIRT607347 YAE1D1 Yae1 domain containing 1 2 6
MIRT607413 MCTS1 MCTS1, re-initiation and release factor 2 2
MIRT608320 SYK spleen associated tyrosine kinase 2 4
MIRT608473 RRP36 ribosomal RNA processing 36 2 2
MIRT608523 TMOD3 tropomodulin 3 2 4
MIRT608572 RNF149 ring finger protein 149 2 2
MIRT608609 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT608676 STPG1 sperm tail PG-rich repeat containing 1 2 2
MIRT608724 ZKSCAN1 zinc finger with KRAB and SCAN domains 1 2 2
MIRT610392 FOXE1 forkhead box E1 2 2
MIRT610537 FAM46A family with sequence similarity 46 member A 2 4
MIRT610664 PHLDA3 pleckstrin homology like domain family A member 3 2 2
MIRT611258 EHD3 EH domain containing 3 2 2
MIRT612247 MICALL1 MICAL like 1 2 2
MIRT613500 ZNF488 zinc finger protein 488 2 2
MIRT613790 RPS6 ribosomal protein S6 2 2
MIRT613832 SPIRE2 spire type actin nucleation factor 2 2 2
MIRT614357 LOH12CR1 BLOC-1 related complex subunit 5 2 2
MIRT614539 NOA1 nitric oxide associated 1 2 2
MIRT615947 SORD sorbitol dehydrogenase 2 2
MIRT616144 HS3ST1 heparan sulfate-glucosamine 3-sulfotransferase 1 2 2
MIRT617103 MPPE1 metallophosphoesterase 1 2 2
MIRT617383 FAM227A family with sequence similarity 227 member A 2 2
MIRT618126 LACTB lactamase beta 2 4
MIRT618236 PGBD4 piggyBac transposable element derived 4 2 2
MIRT618262 DDX51 DEAD-box helicase 51 2 2
MIRT618286 ZNF682 zinc finger protein 682 2 4
MIRT618316 IPP intracisternal A particle-promoted polypeptide 2 2
MIRT618678 MCM8 minichromosome maintenance 8 homologous recombination repair factor 2 2
MIRT619206 LRIF1 ligand dependent nuclear receptor interacting factor 1 2 2
MIRT619658 CORO2A coronin 2A 2 2
MIRT619726 FPR2 formyl peptide receptor 2 2 2
MIRT619870 ZNF347 zinc finger protein 347 2 2
MIRT620129 ZNF283 zinc finger protein 283 2 2
MIRT621087 WDR12 WD repeat domain 12 2 2
MIRT621114 SP110 SP110 nuclear body protein 2 2
MIRT621129 EMC7 ER membrane protein complex subunit 7 2 4
MIRT621236 SIGLEC9 sialic acid binding Ig like lectin 9 2 4
MIRT621421 PNPLA3 patatin like phospholipase domain containing 3 2 2
MIRT621576 ZBTB43 zinc finger and BTB domain containing 43 2 2
MIRT621689 TSPYL1 TSPY like 1 2 2
MIRT621794 TMEM233 transmembrane protein 233 2 2
MIRT621929 SYAP1 synapse associated protein 1 2 4
MIRT621965 STRIP2 striatin interacting protein 2 2 2
MIRT622102 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT622184 SLC7A14 solute carrier family 7 member 14 2 2
MIRT622238 SLC25A45 solute carrier family 25 member 45 2 2
MIRT622473 RNF11 ring finger protein 11 2 2
MIRT622514 RBM20 RNA binding motif protein 20 2 2
MIRT622523 RAD51 RAD51 recombinase 2 2
MIRT622665 POLQ DNA polymerase theta 2 4
MIRT622699 PLEKHO1 pleckstrin homology domain containing O1 2 2
MIRT622831 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT622873 PDE12 phosphodiesterase 12 2 2
MIRT623031 OCIAD2 OCIA domain containing 2 2 2
MIRT623083 NME6 NME/NM23 nucleoside diphosphate kinase 6 2 2
MIRT623303 MARCH7 membrane associated ring-CH-type finger 7 2 2
MIRT623932 FKBP14 FK506 binding protein 14 2 2
MIRT624060 EIF4E eukaryotic translation initiation factor 4E 2 2
MIRT624295 COMMD2 COMM domain containing 2 2 2
MIRT624521 C3orf62 chromosome 3 open reading frame 62 2 2
MIRT624824 ACO1 aconitase 1 2 2
MIRT624908 CTCFL CCCTC-binding factor like 2 2
MIRT625154 ZCCHC8 zinc finger CCHC-type containing 8 2 4
MIRT625382 ZNF716 zinc finger protein 716 2 2
MIRT625771 RBM3 RNA binding motif (RNP1, RRM) protein 3 2 4
MIRT625808 POFUT1 protein O-fucosyltransferase 1 2 2
MIRT625835 NXPE2 neurexophilin and PC-esterase domain family member 2 2 2
MIRT626010 ZNF517 zinc finger protein 517 2 2
MIRT626058 AP3M1 adaptor related protein complex 3 mu 1 subunit 2 2
MIRT626116 IL23R interleukin 23 receptor 2 2
MIRT626252 RBM43 RNA binding motif protein 43 2 2
MIRT626350 PACS1 phosphofurin acidic cluster sorting protein 1 2 2
MIRT626888 ANGEL1 angel homolog 1 2 2
MIRT627303 WDR31 WD repeat domain 31 2 2
MIRT627597 SGK494 uncharacterized serine/threonine-protein kinase SgK494 2 2
MIRT627618 SF3B1 splicing factor 3b subunit 1 2 2
MIRT627630 SENP8 SUMO/sentrin peptidase family member, NEDD8 specific 2 2
MIRT627642 SEC23IP SEC23 interacting protein 2 2
MIRT627651 SAR1A secretion associated Ras related GTPase 1A 2 4
MIRT628388 CACNB2 calcium voltage-gated channel auxiliary subunit beta 2 2 2
MIRT628675 C2orf72 chromosome 2 open reading frame 72 2 2
MIRT628780 TMEM154 transmembrane protein 154 2 2
MIRT629181 ALDOA aldolase, fructose-bisphosphate A 2 2
MIRT629266 NXPE1 neurexophilin and PC-esterase domain family member 1 2 2
MIRT629307 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 1
MIRT629322 ZNF487P zinc finger protein 487 1 1
MIRT629524 ZNF37A zinc finger protein 37A 2 2
MIRT629611 NOL10 nucleolar protein 10 2 2
MIRT629659 NDUFV3 NADH:ubiquinone oxidoreductase subunit V3 2 2
MIRT629671 USP1 ubiquitin specific peptidase 1 2 2
MIRT629765 STK25 serine/threonine kinase 25 2 2
MIRT630447 IDE insulin degrading enzyme 2 2
MIRT630903 GATAD1 GATA zinc finger domain containing 1 2 2
MIRT631001 ZNF573 zinc finger protein 573 2 2
MIRT631157 CCBE1 collagen and calcium binding EGF domains 1 2 2
MIRT631178 HCAR1 hydroxycarboxylic acid receptor 1 2 2
MIRT631339 ZNF84 zinc finger protein 84 2 2
MIRT631342 LATS1 large tumor suppressor kinase 1 2 2
MIRT631359 ZFP30 ZFP30 zinc finger protein 2 4
MIRT631461 FBXO47 F-box protein 47 2 2
MIRT631585 ITGAL integrin subunit alpha L 2 2
MIRT631597 ACBD7 acyl-CoA binding domain containing 7 2 2
MIRT631643 WDR91 WD repeat domain 91 2 4
MIRT631781 IL17RA interleukin 17 receptor A 2 2
MIRT631858 PIGG phosphatidylinositol glycan anchor biosynthesis class G 2 2
MIRT632040 ZNF430 zinc finger protein 430 2 2
MIRT632094 SSR1 signal sequence receptor subunit 1 2 2
MIRT632153 CWC25 CWC25 spliceosome associated protein homolog 2 2
MIRT632234 VTA1 vesicle trafficking 1 2 2
MIRT632287 TTPAL alpha tocopherol transfer protein like 2 2
MIRT632328 TCEANC2 transcription elongation factor A N-terminal and central domain containing 2 2 2
MIRT632392 SLC4A1 solute carrier family 4 member 1 (Diego blood group) 2 2
MIRT632412 SLC30A5 solute carrier family 30 member 5 2 2
MIRT632557 PRPF38A pre-mRNA processing factor 38A 2 2
MIRT633066 DENND5B DENN domain containing 5B 2 2
MIRT633185 AAK1 AP2 associated kinase 1 2 2
MIRT633196 HSPE1-MOB4 HSPE1-MOB4 readthrough 2 2
MIRT633220 ZNF584 zinc finger protein 584 2 2
MIRT633343 GRK4 G protein-coupled receptor kinase 4 2 2
MIRT633407 ZNF566 zinc finger protein 566 2 2
MIRT633479 ZNF724P zinc finger protein 724 2 2
MIRT633485 ARIH2OS ariadne RBR E3 ubiquitin protein ligase 2 opposite strand 2 2
MIRT633516 LRRC27 leucine rich repeat containing 27 2 2
MIRT633556 DLEU1 deleted in lymphocytic leukemia 1 (non-protein coding) 2 2
MIRT633659 SLC28A1 solute carrier family 28 member 1 2 2
MIRT633681 ZNF576 zinc finger protein 576 2 2
MIRT633758 CENPBD1 CENPB DNA-binding domain containing 1 2 2
MIRT633771 SWSAP1 SWIM-type zinc finger 7 associated protein 1 2 2
MIRT633776 F2 coagulation factor II, thrombin 2 2
MIRT633803 ZNF91 zinc finger protein 91 2 2
MIRT633813 WDR92 WD repeat domain 92 2 2
MIRT633948 TMEM231 transmembrane protein 231 2 2
MIRT634000 RTN2 reticulon 2 2 2
MIRT634024 MOB4 MOB family member 4, phocein 2 2
MIRT634228 TMEM132B transmembrane protein 132B 2 2
MIRT634320 SLC43A2 solute carrier family 43 member 2 2 2
MIRT634355 RNF157 ring finger protein 157 2 2
MIRT634586 KIAA1958 KIAA1958 2 2
MIRT634748 CRCP CGRP receptor component 2 2
MIRT635409 KIAA1614 KIAA1614 2 2
MIRT635461 GBP4 guanylate binding protein 4 2 2
MIRT635501 CCR4 C-C motif chemokine receptor 4 2 2
MIRT635627 CDT1 chromatin licensing and DNA replication factor 1 2 4
MIRT635646 CMBL carboxymethylenebutenolidase homolog 2 2
MIRT635750 PIK3C2A phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha 2 2
MIRT635824 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT635969 TTC31 tetratricopeptide repeat domain 31 2 2
MIRT636121 YPEL1 yippee like 1 2 2
MIRT636171 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT636194 TCEB1 elongin C 2 2
MIRT636772 CLUAP1 clusterin associated protein 1 2 2
MIRT636799 CYB5D1 cytochrome b5 domain containing 1 2 2
MIRT636955 APTX aprataxin 2 2
MIRT637096 CXorf23 BCLAF1 and THRAP3 family member 3 2 2
MIRT637149 PCDHA6 protocadherin alpha 6 2 2
MIRT637207 MEAF6 MYST/Esa1 associated factor 6 2 2
MIRT637321 FAM9B family with sequence similarity 9 member B 2 2
MIRT637544 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT637632 ZNF431 zinc finger protein 431 2 2
MIRT637658 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT637704 ZNF439 zinc finger protein 439 2 2
MIRT637807 GGPS1 geranylgeranyl diphosphate synthase 1 2 2
MIRT637831 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT637907 FAM153B family with sequence similarity 153 member B 2 4
MIRT637953 IVD isovaleryl-CoA dehydrogenase 2 2
MIRT637974 IRF1 interferon regulatory factor 1 2 2
MIRT638026 FIG4 FIG4 phosphoinositide 5-phosphatase 2 2
MIRT638066 KCNN1 potassium calcium-activated channel subfamily N member 1 2 2
MIRT638197 TAOK1 TAO kinase 1 2 2
MIRT638403 PRR11 proline rich 11 2 2
MIRT638625 GSR glutathione-disulfide reductase 2 4
MIRT638651 GK5 glycerol kinase 5 (putative) 2 2
MIRT638993 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT639000 ADO 2-aminoethanethiol dioxygenase 2 2
MIRT642200 SMAGP small cell adhesion glycoprotein 2 2
MIRT642537 CERS4 ceramide synthase 4 2 2
MIRT643021 LETM2 leucine zipper and EF-hand containing transmembrane protein 2 2 2
MIRT643423 ERVMER34-1 endogenous retrovirus group MER34 member 1, envelope 2 2
MIRT643459 LAX1 lymphocyte transmembrane adaptor 1 2 4
MIRT643766 NAGK N-acetylglucosamine kinase 2 2
MIRT643892 IMP4 IMP4, U3 small nucleolar ribonucleoprotein 2 2
MIRT644097 SIAH3 siah E3 ubiquitin protein ligase family member 3 2 2
MIRT644680 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT644710 ZNF321P zinc finger protein 321, pseudogene 2 2
MIRT644726 SEPT14 septin 14 2 2
MIRT645138 HES2 hes family bHLH transcription factor 2 2 2
MIRT645314 AGTRAP angiotensin II receptor associated protein 2 2
MIRT645561 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT645737 POLR3A RNA polymerase III subunit A 2 2
MIRT646042 NPR1 natriuretic peptide receptor 1 2 2
MIRT646150 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 2 2
MIRT646362 PIGP phosphatidylinositol glycan anchor biosynthesis class P 2 2
MIRT646566 ALDH5A1 aldehyde dehydrogenase 5 family member A1 2 2
MIRT646871 NT5C2 5'-nucleotidase, cytosolic II 2 2
MIRT647022 NQO2 N-ribosyldihydronicotinamide:quinone reductase 2 2 2
MIRT647104 GNL3L G protein nucleolar 3 like 2 2
MIRT647363 WDR5B WD repeat domain 5B 2 2
MIRT648059 TRMT10C tRNA methyltransferase 10C, mitochondrial RNase P subunit 2 2
MIRT648088 FAM192A family with sequence similarity 192 member A 2 2
MIRT648152 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT648432 MYOZ3 myozenin 3 2 2
MIRT648451 LEAP2 liver enriched antimicrobial peptide 2 2 2
MIRT648920 ZNF551 zinc finger protein 551 2 2
MIRT649104 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT649109 RPL37 ribosomal protein L37 2 2
MIRT649259 IMPA2 inositol monophosphatase 2 2 2
MIRT649742 GNB5 G protein subunit beta 5 2 2
MIRT650092 TERF2 telomeric repeat binding factor 2 2 2
MIRT650578 TTR transthyretin 2 2
MIRT650739 FKTN fukutin 2 2
MIRT650871 APOH apolipoprotein H 2 2
MIRT651024 ZNF699 zinc finger protein 699 2 2
MIRT651391 ZBTB16 zinc finger and BTB domain containing 16 2 2
MIRT651526 WNT2B Wnt family member 2B 2 2
MIRT652640 TIMM10 translocase of inner mitochondrial membrane 10 2 2
MIRT653261 SOGA3 SOGA family member 3 2 2
MIRT653285 SMURF2 SMAD specific E3 ubiquitin protein ligase 2 2 2
MIRT653526 SLC38A9 solute carrier family 38 member 9 2 2
MIRT653708 SLC25A33 solute carrier family 25 member 33 2 2
MIRT653826 SHROOM4 shroom family member 4 2 2
MIRT653888 SGK3 serum/glucocorticoid regulated kinase family member 3 2 2
MIRT654217 RNF19B ring finger protein 19B 2 2
MIRT654848 PPM1K protein phosphatase, Mg2+/Mn2+ dependent 1K 2 2
MIRT655370 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 2 2
MIRT655520 PAG1 phosphoprotein membrane anchor with glycosphingolipid microdomains 1 2 2
MIRT656962 KIAA0408 KIAA0408 2 2
MIRT657048 KCNH6 potassium voltage-gated channel subfamily H member 6 2 2
MIRT657113 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT657198 IKZF3 IKAROS family zinc finger 3 2 2
MIRT657269 HSPA4L heat shock protein family A (Hsp70) member 4 like 2 2
MIRT657317 HOOK3 hook microtubule tethering protein 3 2 2
MIRT657365 HMGB1 high mobility group box 1 2 2
MIRT657522 GTF2H5 general transcription factor IIH subunit 5 2 4
MIRT657535 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT659037 DHTKD1 dehydrogenase E1 and transketolase domain containing 1 2 2
MIRT659590 CEP135 centrosomal protein 135 2 2
MIRT659801 CAV2 caveolin 2 2 2
MIRT659947 C8orf44-SGK3 C8orf44-SGK3 readthrough 2 2
MIRT660693 ANAPC1 anaphase promoting complex subunit 1 2 4
MIRT660951 ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 2 2
MIRT660989 ABHD2 abhydrolase domain containing 2 2 2
MIRT661410 GALNT6 polypeptide N-acetylgalactosaminyltransferase 6 2 2
MIRT661524 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT661752 ATM ATM serine/threonine kinase 2 2
MIRT662158 ALDH7A1 aldehyde dehydrogenase 7 family member A1 2 2
MIRT663363 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT663513 AGMO alkylglycerol monooxygenase 2 2
MIRT663533 ZNF70 zinc finger protein 70 2 2
MIRT663633 HM13 histocompatibility minor 13 2 2
MIRT663760 ZNF285 zinc finger protein 285 2 2
MIRT663841 TRIM72 tripartite motif containing 72 2 2
MIRT664024 C9orf139 chromosome 9 open reading frame 139 2 2
MIRT664049 ANKRD62 ankyrin repeat domain 62 2 2
MIRT664118 C4orf32 family with sequence similarity 241 member A 2 2
MIRT664280 RNMTL1 mitochondrial rRNA methyltransferase 3 2 2
MIRT664642 GALM galactose mutarotase 2 2
MIRT664685 EIF2B2 eukaryotic translation initiation factor 2B subunit beta 2 2
MIRT664764 MESDC2 mesoderm development LRP chaperone 2 2
MIRT665281 ZFP14 ZFP14 zinc finger protein 2 2
MIRT665874 TGOLN2 trans-golgi network protein 2 2 2
MIRT666194 SMCR8 Smith-Magenis syndrome chromosome region, candidate 8 2 2
MIRT666416 SH3D19 SH3 domain containing 19 2 2
MIRT666917 POC1A POC1 centriolar protein A 2 2
MIRT666946 PLSCR1 phospholipid scramblase 1 2 2
MIRT667064 PAOX polyamine oxidase 2 2
MIRT667090 OSTF1 osteoclast stimulating factor 1 2 2
MIRT667677 KPNA6 karyopherin subunit alpha 6 2 2
MIRT667790 KARS lysyl-tRNA synthetase 2 2
MIRT668268 FOXO3 forkhead box O3 2 2
MIRT668555 ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit 2 2
MIRT668830 CYCS cytochrome c, somatic 2 2
MIRT669087 CDX2 caudal type homeobox 2 2 2
MIRT669397 BACE2 beta-site APP-cleaving enzyme 2 2 4
MIRT669571 AKIRIN1 akirin 1 2 2
MIRT669761 ZNF101 zinc finger protein 101 2 2
MIRT669802 GAN gigaxonin 2 2
MIRT669811 STOML1 stomatin like 1 2 2
MIRT669869 MELK maternal embryonic leucine zipper kinase 2 2
MIRT669928 LRPAP1 LDL receptor related protein associated protein 1 2 2
MIRT669952 FBXL2 F-box and leucine rich repeat protein 2 2 2
MIRT670052 RPP14 ribonuclease P/MRP subunit p14 2 2
MIRT670100 CHCHD5 coiled-coil-helix-coiled-coil-helix domain containing 5 2 2
MIRT670302 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT670391 EMP2 epithelial membrane protein 2 2 2
MIRT670487 DCUN1D2 defective in cullin neddylation 1 domain containing 2 2 2
MIRT670537 KIF1C kinesin family member 1C 2 2
MIRT670608 NPHP1 nephrocystin 1 2 2
MIRT670789 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT670885 CYTIP cytohesin 1 interacting protein 2 2
MIRT670936 LIPG lipase G, endothelial type 2 2
MIRT671267 MTRNR2L5 MT-RNR2-like 5 2 2
MIRT671307 RABGAP1L RAB GTPase activating protein 1 like 2 2
MIRT671518 AP1S3 adaptor related protein complex 1 sigma 3 subunit 2 2
MIRT671628 C20orf144 chromosome 20 open reading frame 144 2 4
MIRT671683 ADK adenosine kinase 2 2
MIRT671786 RGS17 regulator of G protein signaling 17 2 2
MIRT671811 WISP3 WNT1 inducible signaling pathway protein 3 2 2
MIRT672006 SLC35F6 solute carrier family 35 member F6 2 4
MIRT672106 TLCD2 TLC domain containing 2 2 2
MIRT672238 ABHD15 abhydrolase domain containing 15 2 2
MIRT672274 SHE Src homology 2 domain containing E 2 2
MIRT672325 C9orf3 chromosome 9 open reading frame 3 2 2
MIRT672696 ZNF677 zinc finger protein 677 2 2
MIRT672817 VEZT vezatin, adherens junctions transmembrane protein 2 2
MIRT672863 C22orf29 retrotransposon Gag like 10 2 2
MIRT672891 FXN frataxin 2 2
MIRT672980 RRAD RRAD, Ras related glycolysis inhibitor and calcium channel regulator 2 2
MIRT673256 INO80 INO80 complex subunit 2 2
MIRT673400 WNT7B Wnt family member 7B 2 2
MIRT673527 ADRBK2 G protein-coupled receptor kinase 3 2 2
MIRT673544 DEGS1 delta 4-desaturase, sphingolipid 1 2 2
MIRT674004 KCNN3 potassium calcium-activated channel subfamily N member 3 2 2
MIRT674018 KCNJ6 potassium voltage-gated channel subfamily J member 6 2 2
MIRT674249 NUP62 nucleoporin 62 2 4
MIRT674358 SLC35E3 solute carrier family 35 member E3 2 2
MIRT674708 FAM73A mitoguardin 1 2 2
MIRT674911 CAPZA2 capping actin protein of muscle Z-line alpha subunit 2 2 2
MIRT675200 ZNF554 zinc finger protein 554 2 2
MIRT675295 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT675374 DCTN5 dynactin subunit 5 2 2
MIRT675446 TPCN2 two pore segment channel 2 2 2
MIRT675473 NUBPL nucleotide binding protein like 2 2
MIRT675672 TMOD2 tropomodulin 2 2 2
MIRT675684 SLC35F5 solute carrier family 35 member F5 2 2
MIRT675789 MED28 mediator complex subunit 28 2 2
MIRT675834 DHODH dihydroorotate dehydrogenase (quinone) 2 4
MIRT675979 FAM126B family with sequence similarity 126 member B 2 2
MIRT676090 DPP9 dipeptidyl peptidase 9 2 2
MIRT676100 ZNF667 zinc finger protein 667 2 2
MIRT676132 RSL1D1 ribosomal L1 domain containing 1 2 2
MIRT676171 HIST1H2BJ histone cluster 1 H2B family member j 2 2
MIRT676243 PARP2 poly(ADP-ribose) polymerase 2 2 2
MIRT676293 SLC25A37 solute carrier family 25 member 37 2 2
MIRT676310 GTF2H2C GTF2H2 family member C 2 2
MIRT676341 PCCB propionyl-CoA carboxylase beta subunit 2 2
MIRT676389 SEC24D SEC24 homolog D, COPII coat complex component 2 2
MIRT676441 PLEKHM3 pleckstrin homology domain containing M3 2 2
MIRT676520 RNF216 ring finger protein 216 2 2
MIRT676584 RDH13 retinol dehydrogenase 13 2 4
MIRT676611 KDSR 3-ketodihydrosphingosine reductase 2 2
MIRT676692 LAIR1 leukocyte associated immunoglobulin like receptor 1 2 2
MIRT676699 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT676745 SGTB small glutamine rich tetratricopeptide repeat containing beta 2 2
MIRT676765 SNX2 sorting nexin 2 2 2
MIRT676778 NPHS1 NPHS1, nephrin 2 2
MIRT676799 RILPL1 Rab interacting lysosomal protein like 1 2 2
MIRT676859 TTC4 tetratricopeptide repeat domain 4 2 2
MIRT676881 ENSA endosulfine alpha 2 2
MIRT676948 S1PR3 sphingosine-1-phosphate receptor 3 2 2
MIRT676962 HFE hemochromatosis 2 2
MIRT677010 HINFP histone H4 transcription factor 2 2
MIRT677049 ZNF34 zinc finger protein 34 2 2
MIRT677075 VMAC vimentin type intermediate filament associated coiled-coil protein 2 2
MIRT677097 MFSD11 major facilitator superfamily domain containing 11 2 4
MIRT677130 OGFOD3 2-oxoglutarate and iron dependent oxygenase domain containing 3 2 2
MIRT677170 ZNF786 zinc finger protein 786 2 2
MIRT677219 RASSF6 Ras association domain family member 6 2 2
MIRT677238 C15orf40 chromosome 15 open reading frame 40 2 2
MIRT677408 ARPC2 actin related protein 2/3 complex subunit 2 2 2
MIRT677428 DDX19B DEAD-box helicase 19B 2 2
MIRT677436 NSMCE2 NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase 2 2
MIRT677467 PDLIM3 PDZ and LIM domain 3 2 2
MIRT677489 GTF2H2 general transcription factor IIH subunit 2 2 2
MIRT677555 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT677583 TRIM65 tripartite motif containing 65 2 2
MIRT677602 PRKX protein kinase, X-linked 2 2
MIRT677650 HAUS2 HAUS augmin like complex subunit 2 2 2
MIRT677702 GINS2 GINS complex subunit 2 2 2
MIRT677764 GRM6 glutamate metabotropic receptor 6 2 2
MIRT677788 CEACAM5 carcinoembryonic antigen related cell adhesion molecule 5 2 2
MIRT677814 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT677891 DCP1A decapping mRNA 1A 2 2
MIRT677921 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT677944 ZNF519 zinc finger protein 519 2 2
MIRT677989 GATC glutamyl-tRNA amidotransferase subunit C 2 2
MIRT678015 SPIC Spi-C transcription factor 2 2
MIRT678068 UBN2 ubinuclein 2 2 2
MIRT678084 EIF2A eukaryotic translation initiation factor 2A 2 2
MIRT678128 METTL21A methyltransferase like 21A 2 2
MIRT678147 SLC4A4 solute carrier family 4 member 4 2 2
MIRT678156 IRGQ immunity related GTPase Q 2 2
MIRT678224 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT678327 FBLIM1 filamin binding LIM protein 1 2 2
MIRT678357 PPAP2B phospholipid phosphatase 3 2 2
MIRT678401 MYPN myopalladin 2 2
MIRT678421 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678434 PDE4C phosphodiesterase 4C 2 2
MIRT678444 PARD6G par-6 family cell polarity regulator gamma 2 2
MIRT678493 ARHGEF39 Rho guanine nucleotide exchange factor 39 2 2
MIRT678507 LCTL lactase like 2 2
MIRT678526 P2RX7 purinergic receptor P2X 7 2 2
MIRT678534 TMEM78 transmembrane protein 78 2 2
MIRT678570 CDK4 cyclin dependent kinase 4 2 2
MIRT678608 MRPL17 mitochondrial ribosomal protein L17 2 2
MIRT678642 PDCD4 programmed cell death 4 2 2
MIRT678702 TRIP11 thyroid hormone receptor interactor 11 2 2
MIRT678724 SRCAP Snf2 related CREBBP activator protein 2 2
MIRT678764 CEP76 centrosomal protein 76 2 2
MIRT678814 HRH4 histamine receptor H4 2 2
MIRT678880 FAM118A family with sequence similarity 118 member A 2 2
MIRT678905 TTLL12 tubulin tyrosine ligase like 12 2 2
MIRT678946 MYADM myeloid associated differentiation marker 2 2
MIRT678960 ZNF329 zinc finger protein 329 2 2
MIRT678972 OGFOD1 2-oxoglutarate and iron dependent oxygenase domain containing 1 2 2
MIRT679067 KREMEN1 kringle containing transmembrane protein 1 2 2
MIRT679072 MANEAL mannosidase endo-alpha like 2 2
MIRT679084 PURB purine rich element binding protein B 2 2
MIRT679115 NMNAT1 nicotinamide nucleotide adenylyltransferase 1 2 2
MIRT679155 ZDHHC15 zinc finger DHHC-type containing 15 2 2
MIRT679177 FFAR4 free fatty acid receptor 4 2 2
MIRT679183 XIAP X-linked inhibitor of apoptosis 2 4
MIRT679224 MAN2A2 mannosidase alpha class 2A member 2 2 2
MIRT679234 LRP10 LDL receptor related protein 10 2 2
MIRT679271 POLM DNA polymerase mu 2 2
MIRT679279 MIPOL1 mirror-image polydactyly 1 2 2
MIRT679345 PPP1R3B protein phosphatase 1 regulatory subunit 3B 2 2
MIRT679352 LRG1 leucine rich alpha-2-glycoprotein 1 2 2
MIRT679365 SIK2 salt inducible kinase 2 2 2
MIRT679493 ZNF106 zinc finger protein 106 2 2
MIRT679600 HILPDA hypoxia inducible lipid droplet associated 2 2
MIRT679636 BRMS1L breast cancer metastasis-suppressor 1 like 2 2
MIRT679650 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT679713 RPL24 ribosomal protein L24 2 2
MIRT679762 TLR6 toll like receptor 6 2 2
MIRT679766 DSN1 DSN1 homolog, MIS12 kinetochore complex component 2 2
MIRT679807 APOBEC3A apolipoprotein B mRNA editing enzyme catalytic subunit 3A 2 2
MIRT679821 TMEM106B transmembrane protein 106B 2 2
MIRT679949 AS3MT arsenite methyltransferase 2 2
MIRT679967 FGFR1OP FGFR1 oncogene partner 2 2
MIRT679992 RUNDC1 RUN domain containing 1 2 2
MIRT680063 CD96 CD96 molecule 2 2
MIRT680079 THAP1 THAP domain containing 1 2 2
MIRT680100 PXMP4 peroxisomal membrane protein 4 2 2
MIRT680138 MRE11A MRE11 homolog, double strand break repair nuclease 2 2
MIRT680146 TOP3A DNA topoisomerase III alpha 2 2
MIRT680324 LRRC58 leucine rich repeat containing 58 2 2
MIRT680414 RNF165 ring finger protein 165 2 2
MIRT680451 PDE6A phosphodiesterase 6A 2 2
MIRT680460 TAS2R5 taste 2 receptor member 5 2 2
MIRT683249 WFDC6 WAP four-disulfide core domain 6 2 2
MIRT685083 HPSE heparanase 2 2
MIRT686255 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT687366 NUP155 nucleoporin 155 2 2
MIRT688320 FAM151B family with sequence similarity 151 member B 2 2
MIRT688390 ENAH ENAH, actin regulator 2 2
MIRT688430 DNAL1 dynein axonemal light chain 1 2 2
MIRT688643 CREM cAMP responsive element modulator 2 2
MIRT688739 CNDP1 carnosine dipeptidase 1 2 2
MIRT689335 FPR1 formyl peptide receptor 1 2 4
MIRT690685 PTCHD3 patched domain containing 3 2 2
MIRT690956 APOL1 apolipoprotein L1 2 2
MIRT691727 LARS leucyl-tRNA synthetase 2 2
MIRT693472 ZNF707 zinc finger protein 707 2 2
MIRT693959 HNRNPA1L2 heterogeneous nuclear ribonucleoprotein A1-like 2 2 2
MIRT695487 TRAT1 T-cell receptor associated transmembrane adaptor 1 2 2
MIRT696596 ORMDL2 ORMDL sphingolipid biosynthesis regulator 2 2 2
MIRT697024 EPDR1 ependymin related 1 2 2
MIRT698140 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT699106 SNIP1 Smad nuclear interacting protein 1 2 2
MIRT699817 SCN2B sodium voltage-gated channel beta subunit 2 2 2
MIRT701535 NCKAP1 NCK associated protein 1 2 2
MIRT702897 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT705035 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT706023 ZSCAN2 zinc finger and SCAN domain containing 2 2 2
MIRT706039 F2R coagulation factor II thrombin receptor 2 2
MIRT706102 ENTPD4 ectonucleoside triphosphate diphosphohydrolase 4 2 2
MIRT706311 CCDC30 coiled-coil domain containing 30 2 2
MIRT706345 STAC2 SH3 and cysteine rich domain 2 2 2
MIRT706400 HAS2 hyaluronan synthase 2 2 2
MIRT706436 LIAS lipoic acid synthetase 2 2
MIRT709396 QRFPR pyroglutamylated RFamide peptide receptor 2 2
MIRT710345 ZNF669 zinc finger protein 669 2 2
MIRT710725 C19orf68 zinc finger SWIM-type containing 9 2 2
MIRT711276 SDR9C7 short chain dehydrogenase/reductase family 9C member 7 2 2
MIRT711862 TRAF2 TNF receptor associated factor 2 2 2
MIRT711921 AKR7A2 aldo-keto reductase family 7 member A2 2 2
MIRT712060 ZBTB34 zinc finger and BTB domain containing 34 2 2
MIRT712593 ADCYAP1 adenylate cyclase activating polypeptide 1 2 2
MIRT712903 TGFA transforming growth factor alpha 2 2
MIRT713297 DCP2 decapping mRNA 2 2 2
MIRT714801 WDPCP WD repeat containing planar cell polarity effector 2 2
MIRT715314 POLR2E RNA polymerase II subunit E 2 2
MIRT715727 PIAS2 protein inhibitor of activated STAT 2 2 2
MIRT717606 DSTYK dual serine/threonine and tyrosine protein kinase 2 2
MIRT717877 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT718484 TMEM151A transmembrane protein 151A 2 2
MIRT720439 C19orf47 chromosome 19 open reading frame 47 2 2
MIRT721563 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT721698 TFAP2B transcription factor AP-2 beta 2 2
MIRT722525 PLXNA2 plexin A2 2 2
MIRT722758 SIRPB2 signal regulatory protein beta 2 2 2
MIRT723297 MOGAT1 monoacylglycerol O-acyltransferase 1 2 2
MIRT723407 NLRP10 NLR family pyrin domain containing 10 2 2
MIRT724218 RAB6B RAB6B, member RAS oncogene family 2 2
MIRT724422 FGF2 fibroblast growth factor 2 2 2
MIRT756017 AMBRA1 autophagy and beclin 1 regulator 1 3 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-3653 Ginsenoside Rh2 NULL 119307 Microarray NSCLC cell line A549 23152132 2013 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3653 Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (SKOV3)
hsa-miR-3653 Fluorouracil 3385 NSC19893 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-3653 Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-3653 Plx-4720 24180719 NSC757438 resistant High Thyroid Cancer cell line (8505c, BCPAP)
hsa-miR-3653 Platinum 23939 resistant High Ovarian Cancer tissue
hsa-miR-3653 Cisplatin 5460033 NSC119875 approved sensitive cell line (CAL-27) (cytosolic RNA)
hsa-miR-3653 Cisplatin 5460033 NSC119875 approved sensitive cell line (CP20)
hsa-miR-3653 Cisplatin 5460033 NSC119875 approved sensitive cell line (CIS)
hsa-miR-3653 Platinum 23939 resistant tissue (non-small cell lung cancer)
hsa-miR-3653 Platinum 23939 resistant tissue
hsa-miR-3653 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3653 Vemurafenib 42611257 NSC761431 approved sensitive cell line (LM16)
hsa-miR-3653-5p Docetaxel 148124 NSC628503 approved resistant High Breast Cancer cell line (MDA-MB-231, MCF-7)
hsa-miR-3653-5p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)

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