pre-miRNA Information
pre-miRNA hsa-mir-1273h   
Genomic Coordinates chr16: 24203116 - 24203231
Description Homo sapiens miR-1273h stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-1273h-5p
Sequence 33| CUGGGAGGUCAAGGCUGCAGU |53
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1028034199 14 dbSNP
rs542383563 18 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol KANSL1   
Synonyms CENP-36, KDVS, KIAA1267, MSL1v1, NSL1, hMSL1v1
Description KAT8 regulatory NSL complex subunit 1
Transcript NM_015443   
Expression
Putative miRNA Targets on KANSL1
3'UTR of KANSL1
(miRNA target sites are highlighted)
>KANSL1|NM_015443|3'UTR
   1 GCGGGAGACAGCCATCTAAACAGACTCACTAACTATTGGCATTAAAGCTTCAGAAATCTCTGCGTTTGATATTCAAACAT
  81 CATATGCCGGAAATTTTCACAGTTTTTAGTGAACTTAAGGAATTTAGATCCTACTTTGGTATTTTTTTTTCTTGTTTTAA
 161 TTTTTGTTTTGTTTTTGTTTCCATGTTTTCTTGTCACACACCTGAGCACTTCCTCCCGTTGGCAAACAGAAGTTCAGGAT
 241 GAGACCCTGCTGGCCTGGTCCTGGCACATCCTCTGCACTGTTGAATCACTGGACTTACTGATCTTAGATGACCACCCCCT
 321 CCCTCACACCTGTGGGCAGGGCAGAACAGCCTGGCGGGCTACAGTTTAGCATGGCCTTCTTGAGCTAGGGTGGAATGGGG
 401 CAGGGTGCTCTGGACTCTTACCCCCTCCCCTCCCATCTGTGGCTTGGCTCTGCTGTGGCCCTCCTGGCTGGGTCCCCTTG
 481 GTTTTTCGTGCTGGAACATCCCCACCAGAGCCTCTCTGCCATAACTGCCAGCTGCTCTCCCCGAGTGCTCAGCTGGCAGA
 561 ACACCTTTCCTTTCTCACCCAGAACTTAAGAGACTGATTTTTTGTTTCATCTGCATTTGGTCTTCTCTGTTTTGACTCTT
 641 TCACTGCAGTAACCTGGCTGTGGCTGCTCAGGTTCCCCTCCTCATGCCCCTTGGTACCCTTCCCTGTCTGCTCTCCCATG
 721 CCATGTACACACCCACAACCCGTCCTTCCACTTGGAATATTTTTACCACCTATCCTGATCTTTGAAGGTAGGGTTAGGAC
 801 TACTTAACCTCTATTCCCACTCCCCTGCAAACTGGGGGTTGTGGGAAGTGAGCAGCCATCTCCCTGTGTGATTTTTTTTT
 881 TTTTTCCCTCTGATTCACTTTGCCATGTTTCCTTCACATCCAGATCCCTGTCGGTGTTAGTTCCACTCTTGGTCTTTCAC
 961 GCTCCCCTTGCCTGTGGAACATTGTCTGGTCCTAGCTGTGGTTCCCATTGTTCCCCCTTCACCCTTCTCTGTTAACCTTG
1041 TGCCTGTCTCCTGTATGATCACATCACCAAAAAGGGGGAGGGGGGAGAAGACTCTTTTTTTTTGGCCATTTTGTAATCGT
1121 ATAAAAATAGTAGACAACTGCTTAATGGTTGGGGTTTTTTCACAATTTTCAACATTAGTGATTTTTTTTTCTGTTTGCAA
1201 GTTAAAGGGTTTGTCATTGTTTCTTTAAAAAAAAATACAATAATGCACCATATCCCTATGCATAAAGTGCTTCTTCTATT
1281 TATAAGGTTGAAAATTCTGAATAACCCTTTTAGCATTGAAAAAAAAAACAAAAACAAAAAATGGAAAAAAAAAACCTTGT
1361 ATTTTGTAAATATTTTCTTTTCCTGCTTTGGAGCTGTGTAATGGCAGCGAAACATGTAGCTGTCTTTGTTCTATAGAAAT
1441 GCTTTTCTTCAGAGAAGCTGATCTTTGTTAATGTCTTGATTCTGTTCGCAAAGCACAGACTAGTGCTTAAAAAAAAAAAA
1521 GAAGGAAAAATTGAAAAAAATAAAAAAAAAAGTTACAGAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ugacgucGGAACUGGAGGGUc 5'
                 || |  ||||||| 
Target 5' tcttaccCCCTCCCCTCCCAt 3'
416 - 436 146.00 -14.60
2
miRNA  3' ugACGUCG-GAACUGGAGGGUc 5'
            || ||| |||  ||||||: 
Target 5' ccTG-AGCACTT--CCTCCCGt 3'
201 - 219 138.00 -18.50
3
miRNA  3' ugacGUCGGAACUGGAGGGUc 5'
              | |:| || :|||||| 
Target 5' ttccCTGTC-TGCTCTCCCAt 3'
700 - 719 136.00 -14.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
391464 2 ClinVar
381968 3 ClinVar
323761 36 ClinVar
323760 38 ClinVar
323759 217 ClinVar
323758 360 ClinVar
323757 388 ClinVar
323756 487 ClinVar
323754 626 ClinVar
323752 640 ClinVar
323751 742 ClinVar
323749 886 ClinVar
323748 954 ClinVar
323746 1027 ClinVar
323745 1028 ClinVar
323744 1104 ClinVar
323743 1196 ClinVar
323741 1236 ClinVar
323742 1236 ClinVar
323738 1329 ClinVar
323735 1355 ClinVar
323736 1355 ClinVar
323731 1521 ClinVar
323732 1521 ClinVar
323730 1552 ClinVar
COSN23669300 3 COSMIC
COSN30480583 5 COSMIC
COSN31542880 63 COSMIC
COSN31598717 63 COSMIC
COSN30176262 68 COSMIC
COSN31518995 88 COSMIC
COSN31491287 120 COSMIC
COSN22816383 141 COSMIC
COSN28878956 142 COSMIC
COSN4769228 241 COSMIC
COSN31579872 253 COSMIC
COSN20114044 355 COSMIC
COSN25784081 401 COSMIC
COSN25229791 540 COSMIC
COSN16073428 542 COSMIC
COSN8837408 703 COSMIC
COSN20114043 871 COSMIC
COSN28988513 872 COSMIC
COSN22555722 876 COSMIC
COSN8837407 984 COSMIC
COSN20114042 1226 COSMIC
COSN31548922 1231 COSMIC
COSN29586879 1318 COSMIC
COSN20114040 1319 COSMIC
COSN31489110 1478 COSMIC
COSN31517507 1487 COSMIC
COSN20114038 1509 COSMIC
COSN24306242 1541 COSMIC
COSN24305899 1542 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1173885709 1 dbSNP
rs774194245 2 dbSNP
rs372125138 3 dbSNP
rs901807508 4 dbSNP
rs1361944933 7 dbSNP
rs775460035 8 dbSNP
rs769590171 9 dbSNP
rs1304244642 10 dbSNP
rs746012943 15 dbSNP
rs1231071714 16 dbSNP
rs567243937 17 dbSNP
rs776352811 18 dbSNP
rs1449330951 19 dbSNP
rs1323279372 25 dbSNP
rs1331969624 26 dbSNP
rs747161928 30 dbSNP
rs1377535849 31 dbSNP
rs768138439 31 dbSNP
rs1335580355 35 dbSNP
rs767896466 36 dbSNP
rs373668834 38 dbSNP
rs1168911624 41 dbSNP
rs778296615 45 dbSNP
rs553624358 47 dbSNP
rs1229182895 48 dbSNP
rs1182791468 51 dbSNP
rs1275311912 56 dbSNP
rs1020982547 60 dbSNP
rs943068318 63 dbSNP
rs1266402208 84 dbSNP
rs1429596239 84 dbSNP
rs1201057168 86 dbSNP
rs752732089 88 dbSNP
rs1245766208 89 dbSNP
rs1448378807 93 dbSNP
rs546370187 114 dbSNP
rs1423274696 115 dbSNP
rs1043475663 134 dbSNP
rs76025910 141 dbSNP
rs778823729 145 dbSNP
rs78288850 150 dbSNP
rs1001626132 151 dbSNP
rs1035821925 151 dbSNP
rs905971553 151 dbSNP
rs1448700368 154 dbSNP
rs947552634 162 dbSNP
rs913401170 167 dbSNP
rs1282036143 171 dbSNP
rs1299903735 177 dbSNP
rs1367349996 181 dbSNP
rs989036321 182 dbSNP
rs754855855 183 dbSNP
rs1242519535 184 dbSNP
rs1356812096 185 dbSNP
rs938927477 190 dbSNP
rs1211367233 193 dbSNP
rs928904706 201 dbSNP
rs1265892709 207 dbSNP
rs763093998 208 dbSNP
rs1006660959 209 dbSNP
rs980084725 216 dbSNP
rs140200874 217 dbSNP
rs1016332766 218 dbSNP
rs1421485926 218 dbSNP
rs985292957 219 dbSNP
rs1284169061 229 dbSNP
rs1369518617 231 dbSNP
rs1459806070 241 dbSNP
rs1225521194 249 dbSNP
rs1421249799 255 dbSNP
rs1388256066 264 dbSNP
rs1047456876 266 dbSNP
rs929907898 268 dbSNP
rs1404017743 269 dbSNP
rs1395477046 270 dbSNP
rs1311962418 281 dbSNP
rs1340955898 284 dbSNP
rs950545981 287 dbSNP
rs1026563610 290 dbSNP
rs750626539 297 dbSNP
rs1328130044 298 dbSNP
rs557530485 298 dbSNP
rs537145609 300 dbSNP
rs759242187 304 dbSNP
rs1347488375 308 dbSNP
rs767649413 315 dbSNP
rs865959422 318 dbSNP
rs868488291 319 dbSNP
rs1269577623 320 dbSNP
rs1457049015 320 dbSNP
rs1407230915 322 dbSNP
rs1482009195 323 dbSNP
rs112051212 325 dbSNP
rs1257544953 329 dbSNP
rs910997692 335 dbSNP
rs1180558476 347 dbSNP
rs1017498972 351 dbSNP
rs776107572 353 dbSNP
rs1432398390 355 dbSNP
rs1007157801 356 dbSNP
rs200384907 356 dbSNP
rs113448888 360 dbSNP
rs978494820 363 dbSNP
rs903544100 366 dbSNP
rs1423995525 367 dbSNP
rs1161676422 377 dbSNP
rs1357603344 378 dbSNP
rs1186644514 380 dbSNP
rs968821569 385 dbSNP
rs367998611 388 dbSNP
rs1402893449 391 dbSNP
rs1240311755 398 dbSNP
rs1306049294 399 dbSNP
rs1349678512 401 dbSNP
rs1228740369 405 dbSNP
rs762158298 407 dbSNP
rs945125361 408 dbSNP
rs988842186 415 dbSNP
rs1256070945 419 dbSNP
rs1483909414 420 dbSNP
rs892252377 421 dbSNP
rs182071752 422 dbSNP
rs554651362 423 dbSNP
rs1035877419 424 dbSNP
rs763541489 426 dbSNP
rs1001678553 428 dbSNP
rs1184745162 429 dbSNP
rs938858367 432 dbSNP
rs751575389 439 dbSNP
rs970184139 440 dbSNP
rs144386890 442 dbSNP
rs149673847 448 dbSNP
rs1427849690 450 dbSNP
rs1166679142 451 dbSNP
rs948671739 452 dbSNP
rs909219514 455 dbSNP
rs191706665 460 dbSNP
rs1300792640 461 dbSNP
rs764279233 466 dbSNP
rs1006298467 467 dbSNP
rs532137925 471 dbSNP
rs186913097 474 dbSNP
rs17652961 487 dbSNP
rs965867183 488 dbSNP
rs35349036 504 dbSNP
rs1017445052 510 dbSNP
rs1207807016 512 dbSNP
rs1007437326 519 dbSNP
rs901106157 521 dbSNP
rs1407471957 530 dbSNP
rs549897622 532 dbSNP
rs942536883 537 dbSNP
rs1192020827 542 dbSNP
rs182060151 543 dbSNP
rs776007238 547 dbSNP
rs1358239634 559 dbSNP
rs1389541779 565 dbSNP
rs1430326919 566 dbSNP
rs1170655045 568 dbSNP
rs1347917130 571 dbSNP
rs560953214 578 dbSNP
rs1293781873 582 dbSNP
rs1022378860 585 dbSNP
rs1432321323 588 dbSNP
rs1009271335 589 dbSNP
rs1043237843 590 dbSNP
rs1366641816 590 dbSNP
rs1216831083 592 dbSNP
rs1321531498 596 dbSNP
rs139454638 596 dbSNP
rs1222737832 604 dbSNP
rs886053067 608 dbSNP
rs912938302 610 dbSNP
rs770095702 611 dbSNP
rs1244859288 621 dbSNP
rs533537317 626 dbSNP
rs1482784109 627 dbSNP
rs959677140 629 dbSNP
rs886053066 637 dbSNP
rs17574361 640 dbSNP
rs1423067890 642 dbSNP
rs1205417776 657 dbSNP
rs1165188895 659 dbSNP
rs1309474040 669 dbSNP
rs1396293466 675 dbSNP
rs1272661187 682 dbSNP
rs776223913 682 dbSNP
rs1455310090 684 dbSNP
rs1282514469 688 dbSNP
rs770486856 690 dbSNP
rs1319388066 693 dbSNP
rs907384123 703 dbSNP
rs1044634669 706 dbSNP
rs1432242851 713 dbSNP
rs551056408 716 dbSNP
rs948953208 717 dbSNP
rs909500431 721 dbSNP
rs1049518868 724 dbSNP
rs1379054616 729 dbSNP
rs929346121 732 dbSNP
rs1384251780 733 dbSNP
rs1327441487 738 dbSNP
rs1208363443 741 dbSNP
rs7350928 742 dbSNP
rs1208068358 744 dbSNP
rs985327203 748 dbSNP
rs950838851 751 dbSNP
rs1378809972 757 dbSNP
rs976204534 764 dbSNP
rs1471453999 765 dbSNP
rs1157990723 770 dbSNP
rs1443999029 777 dbSNP
rs1412215385 783 dbSNP
rs1401989962 787 dbSNP
rs1352397062 790 dbSNP
rs1331608292 799 dbSNP
rs1359162538 800 dbSNP
rs965815496 808 dbSNP
rs1026792301 809 dbSNP
rs1349043891 811 dbSNP
rs1167457716 813 dbSNP
rs886053065 816 dbSNP
rs577559225 824 dbSNP
rs1019574491 825 dbSNP
rs1443008596 832 dbSNP
rs1006808933 833 dbSNP
rs910386118 835 dbSNP
rs561989638 838 dbSNP
rs1470956437 845 dbSNP
rs891562125 846 dbSNP
rs947181405 846 dbSNP
rs967932272 857 dbSNP
rs1022242826 858 dbSNP
rs1369211640 861 dbSNP
rs1409650576 863 dbSNP
rs1178727267 864 dbSNP
rs1481766320 871 dbSNP
rs77877023 872 dbSNP
rs1009631186 884 dbSNP
rs1249866659 885 dbSNP
rs1339958463 886 dbSNP
rs1434585074 886 dbSNP
rs1491039734 886 dbSNP
rs35400776 886 dbSNP
rs560103470 886 dbSNP
rs5820607 886 dbSNP
rs1204262345 887 dbSNP
rs1204549020 887 dbSNP
rs1273450983 889 dbSNP
rs928298669 889 dbSNP
rs1294589261 890 dbSNP
rs1245732240 892 dbSNP
rs1243175652 893 dbSNP
rs980362743 896 dbSNP
rs1388920449 904 dbSNP
rs1429664812 905 dbSNP
rs1169709832 906 dbSNP
rs1399097922 913 dbSNP
rs1403903828 913 dbSNP
rs1323176145 916 dbSNP
rs1331879115 923 dbSNP
rs777125731 926 dbSNP
rs1295491013 932 dbSNP
rs557566678 933 dbSNP
rs1308243548 952 dbSNP
rs150500194 954 dbSNP
rs1251771407 958 dbSNP
rs1035154991 960 dbSNP
rs113829708 961 dbSNP
rs1207814485 961 dbSNP
rs1245667353 964 dbSNP
rs1448289477 966 dbSNP
rs1194546439 967 dbSNP
rs1375244012 970 dbSNP
rs1003302717 974 dbSNP
rs1472036779 976 dbSNP
rs1306982817 977 dbSNP
rs1391814861 979 dbSNP
rs1405036374 981 dbSNP
rs866247914 988 dbSNP
rs984993270 991 dbSNP
rs1388031807 992 dbSNP
rs1366831878 997 dbSNP
rs1296262192 1000 dbSNP
rs1328108860 1004 dbSNP
rs950928013 1007 dbSNP
rs1283374622 1013 dbSNP
rs1457407843 1017 dbSNP
rs1234761537 1020 dbSNP
rs748062988 1022 dbSNP
rs11870461 1027 dbSNP
rs375427074 1028 dbSNP
rs976154695 1031 dbSNP
rs888008383 1037 dbSNP
rs534663923 1040 dbSNP
rs1410068430 1043 dbSNP
rs754764162 1046 dbSNP
rs1017619560 1047 dbSNP
rs919270859 1048 dbSNP
rs749102622 1050 dbSNP
rs1208129234 1052 dbSNP
rs1007531685 1055 dbSNP
rs565649466 1060 dbSNP
rs1488461949 1062 dbSNP
rs1411474243 1063 dbSNP
rs1261803681 1064 dbSNP
rs1241652562 1065 dbSNP
rs1327435716 1067 dbSNP
rs1287340918 1068 dbSNP
rs944788271 1069 dbSNP
rs910672963 1070 dbSNP
rs28553921 1073 dbSNP
rs985915837 1075 dbSNP
rs558466127 1080 dbSNP
rs946596612 1081 dbSNP
rs1385716313 1082 dbSNP
rs779954172 1088 dbSNP
rs757396562 1093 dbSNP
rs1290513929 1094 dbSNP
rs1261978881 1095 dbSNP
rs189466615 1096 dbSNP
rs374923391 1096 dbSNP
rs548139198 1096 dbSNP
rs1455445474 1098 dbSNP
rs1044049608 1102 dbSNP
rs1180446465 1104 dbSNP
rs1419888412 1104 dbSNP
rs142756815 1104 dbSNP
rs948363123 1104 dbSNP
rs1387559131 1106 dbSNP
rs569545053 1116 dbSNP
rs1480924159 1118 dbSNP
rs988090327 1118 dbSNP
rs956540674 1119 dbSNP
rs1375958374 1128 dbSNP
rs1196910599 1132 dbSNP
rs1305951899 1133 dbSNP
rs549673929 1137 dbSNP
rs1034695431 1138 dbSNP
rs1391626960 1140 dbSNP
rs1432617318 1143 dbSNP
rs929522902 1149 dbSNP
rs11539537 1154 dbSNP
rs1231857039 1161 dbSNP
rs1281732907 1163 dbSNP
rs1263052852 1165 dbSNP
rs751844327 1168 dbSNP
rs764036245 1176 dbSNP
rs758494380 1183 dbSNP
rs1179189919 1186 dbSNP
rs1395677016 1191 dbSNP
rs910610046 1191 dbSNP
rs986148064 1191 dbSNP
rs1436513631 1192 dbSNP
rs1267969567 1193 dbSNP
rs968435320 1195 dbSNP
rs137970866 1196 dbSNP
rs1462269664 1204 dbSNP
rs1299572676 1207 dbSNP
rs1365029617 1213 dbSNP
rs567201128 1221 dbSNP
rs887963961 1227 dbSNP
rs1272671932 1232 dbSNP
rs140510364 1236 dbSNP
rs955940898 1236 dbSNP
rs1308475611 1237 dbSNP
rs1028286613 1240 dbSNP
rs1263948668 1244 dbSNP
rs1488270523 1245 dbSNP
rs1031926441 1250 dbSNP
rs547375618 1251 dbSNP
rs556641274 1255 dbSNP
rs527324885 1259 dbSNP
rs183793920 1272 dbSNP
rs1186630691 1276 dbSNP
rs1447680884 1276 dbSNP
rs771885571 1278 dbSNP
rs1394911635 1282 dbSNP
rs1428955485 1283 dbSNP
rs1172256764 1284 dbSNP
rs993765382 1285 dbSNP
rs1347830462 1286 dbSNP
rs886053064 1287 dbSNP
rs552931988 1288 dbSNP
rs1326091736 1290 dbSNP
rs898109168 1291 dbSNP
rs1396054075 1295 dbSNP
rs541570663 1304 dbSNP
rs886053063 1306 dbSNP
rs1288837011 1307 dbSNP
rs1363244997 1316 dbSNP
rs1432879209 1318 dbSNP
rs1311021467 1319 dbSNP
rs1334549258 1320 dbSNP
rs1044105690 1322 dbSNP
rs1012563461 1329 dbSNP
rs1208167600 1329 dbSNP
rs71665335 1329 dbSNP
rs887429997 1329 dbSNP
rs1364363028 1330 dbSNP
rs1049356938 1333 dbSNP
rs1470819669 1335 dbSNP
rs1474728842 1335 dbSNP
rs1455232817 1336 dbSNP
rs1317001949 1338 dbSNP
rs929549668 1339 dbSNP
rs1040343025 1340 dbSNP
rs1301554430 1341 dbSNP
rs1355262577 1341 dbSNP
rs1415748605 1342 dbSNP
rs1295404304 1343 dbSNP
rs532837667 1344 dbSNP
rs1327327198 1345 dbSNP
rs1223360311 1346 dbSNP
rs886053062 1350 dbSNP
rs563924578 1354 dbSNP
rs1217885374 1355 dbSNP
rs1485243815 1355 dbSNP
rs67641084 1355 dbSNP
rs886053061 1355 dbSNP
rs1465619864 1356 dbSNP
rs1259249695 1370 dbSNP
rs1471403209 1373 dbSNP
rs1373777177 1383 dbSNP
rs11539536 1389 dbSNP
rs1190590475 1398 dbSNP
rs760101658 1402 dbSNP
rs1040576904 1408 dbSNP
rs1375351409 1409 dbSNP
rs781388886 1409 dbSNP
rs7502673 1410 dbSNP
rs543626880 1414 dbSNP
rs915088423 1415 dbSNP
rs1315177862 1417 dbSNP
rs886053060 1433 dbSNP
rs886053059 1434 dbSNP
rs776847930 1442 dbSNP
rs1280305941 1444 dbSNP
rs574879269 1464 dbSNP
rs1276069084 1468 dbSNP
rs1375653613 1471 dbSNP
rs986202187 1481 dbSNP
rs1278162237 1487 dbSNP
rs147415592 1488 dbSNP
rs1282203616 1493 dbSNP
rs1047606 1495 dbSNP
rs1435817118 1501 dbSNP
rs1199465338 1502 dbSNP
rs759428148 1505 dbSNP
rs1233070500 1518 dbSNP
rs935260350 1519 dbSNP
rs75210291 1520 dbSNP
rs11539535 1521 dbSNP
rs1455092333 1521 dbSNP
rs67801660 1521 dbSNP
rs75187918 1521 dbSNP
rs886053058 1521 dbSNP
rs915224810 1521 dbSNP
rs968110171 1521 dbSNP
rs988123041 1523 dbSNP
rs1339640463 1524 dbSNP
rs1356471550 1524 dbSNP
rs769319125 1525 dbSNP
rs1371735394 1526 dbSNP
rs142803832 1532 dbSNP
rs1031523000 1541 dbSNP
rs1305486957 1541 dbSNP
rs1002681481 1542 dbSNP
rs1315586365 1545 dbSNP
rs1022702747 1552 dbSNP
rs1273345732 1552 dbSNP
rs1439193045 1552 dbSNP
rs767830420 1552 dbSNP
rs886053057 1552 dbSNP
rs887493893 1552 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ugacgucGGAACUGGAGGGUc 5'
                 || |  ||||||| 
Target 5' ------cCCCUCCCCUCCCAu 3'
1 - 15
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000574590.1 | 3UTR | CCCCUCCCCUCCCAUCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
494 hsa-miR-1273h-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT074355 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT100721 TJAP1 tight junction associated protein 1 2 2
MIRT115545 MAZ MYC associated zinc finger protein 2 2
MIRT124982 XIAP X-linked inhibitor of apoptosis 2 4
MIRT139911 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT177183 ARL5B ADP ribosylation factor like GTPase 5B 2 4
MIRT187994 MBD6 methyl-CpG binding domain protein 6 2 2
MIRT207410 MAT2A methionine adenosyltransferase 2A 2 6
MIRT241928 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT260110 KLHL21 kelch like family member 21 2 2
MIRT260358 XRCC6 X-ray repair cross complementing 6 2 6
MIRT266428 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT294663 ZNF548 zinc finger protein 548 2 2
MIRT351039 PLEKHB2 pleckstrin homology domain containing B2 2 2
MIRT379943 PRRG4 proline rich and Gla domain 4 2 2
MIRT398983 KAT7 lysine acetyltransferase 7 2 2
MIRT441465 BEST3 bestrophin 3 2 2
MIRT446750 ZNF491 zinc finger protein 491 2 2
MIRT449224 RAD51B RAD51 paralog B 2 2
MIRT450623 AQR aquarius intron-binding spliceosomal factor 2 2
MIRT451090 ZNF584 zinc finger protein 584 2 2
MIRT451558 CIAPIN1 cytokine induced apoptosis inhibitor 1 2 2
MIRT451736 CES3 carboxylesterase 3 2 2
MIRT452411 QDPR quinoid dihydropteridine reductase 2 2
MIRT452559 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT452851 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT452922 DISC1 disrupted in schizophrenia 1 2 2
MIRT453043 TANGO2 transport and golgi organization 2 homolog 2 4
MIRT453097 HOXC4 homeobox C4 2 2
MIRT453297 ZNF394 zinc finger protein 394 2 2
MIRT453593 ZNF557 zinc finger protein 557 2 2
MIRT453787 KBTBD12 kelch repeat and BTB domain containing 12 2 2
MIRT453987 CECR1 adenosine deaminase 2 2 2
MIRT454083 TMEM209 transmembrane protein 209 2 2
MIRT454652 FBXL18 F-box and leucine rich repeat protein 18 2 2
MIRT454753 PFKFB3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 2 2
MIRT455311 TTLL9 tubulin tyrosine ligase like 9 2 2
MIRT456468 SERAC1 serine active site containing 1 2 2
MIRT456554 TOMM20 translocase of outer mitochondrial membrane 20 2 2
MIRT456716 TMEM239 transmembrane protein 239 2 4
MIRT456796 SIGLEC14 sialic acid binding Ig like lectin 14 2 2
MIRT457487 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457999 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT458130 TLCD2 TLC domain containing 2 2 2
MIRT459027 ZNF490 zinc finger protein 490 2 4
MIRT459119 FADS6 fatty acid desaturase 6 2 2
MIRT459315 HAVCR2 hepatitis A virus cellular receptor 2 2 2
MIRT459385 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT459412 FAM83B family with sequence similarity 83 member B 2 2
MIRT459974 RFT1 RFT1 homolog 2 2
MIRT460480 FAM105A family with sequence similarity 105 member A 2 6
MIRT460586 FEM1A fem-1 homolog A 2 2
MIRT460920 NOA1 nitric oxide associated 1 2 4
MIRT461072 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT461590 DPH2 DPH2 homolog 2 2
MIRT461854 ZNF317 zinc finger protein 317 2 2
MIRT462176 ACADL acyl-CoA dehydrogenase, long chain 2 2
MIRT462446 GCDH glutaryl-CoA dehydrogenase 2 2
MIRT463854 WNT7B Wnt family member 7B 2 2
MIRT464310 UST uronyl 2-sulfotransferase 2 2
MIRT464815 UBE2B ubiquitin conjugating enzyme E2 B 2 2
MIRT465453 TOR2A torsin family 2 member A 2 2
MIRT466073 TMEM184C transmembrane protein 184C 2 2
MIRT466514 TBXA2R thromboxane A2 receptor 2 2
MIRT467072 SRRD SRR1 domain containing 2 2
MIRT469551 RARA retinoic acid receptor alpha 2 2
MIRT469741 RAB2B RAB2B, member RAS oncogene family 2 2
MIRT470759 PNPLA6 patatin like phospholipase domain containing 6 2 2
MIRT470875 PLXND1 plexin D1 2 2
MIRT470976 PITPNA phosphatidylinositol transfer protein alpha 2 2
MIRT471048 PIM3 Pim-3 proto-oncogene, serine/threonine kinase 2 2
MIRT471215 PHAX phosphorylated adaptor for RNA export 2 2
MIRT471246 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT471286 PGAM4 phosphoglycerate mutase family member 4 2 2
MIRT471467 PDE7B phosphodiesterase 7B 2 2
MIRT473069 MORN4 MORN repeat containing 4 2 4
MIRT473989 LRRC20 leucine rich repeat containing 20 2 2
MIRT474518 KLHDC8A kelch domain containing 8A 2 2
MIRT474990 KANSL1 KAT8 regulatory NSL complex subunit 1 2 2
MIRT475547 HNRNPUL1 heterogeneous nuclear ribonucleoprotein U like 1 2 2
MIRT476350 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT477298 EPHB2 EPH receptor B2 2 2
MIRT477933 DPM2 dolichyl-phosphate mannosyltransferase subunit 2, regulatory 2 2
MIRT478282 DDX19A DEAD-box helicase 19A 2 4
MIRT478472 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT478559 CTNND1 catenin delta 1 2 2
MIRT478618 CTDNEP1 CTD nuclear envelope phosphatase 1 2 2
MIRT478834 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT479007 COL5A1 collagen type V alpha 1 chain 2 2
MIRT479166 CLSPN claspin 2 2
MIRT482454 ADAR adenosine deaminase, RNA specific 2 4
MIRT483019 KHSRP KH-type splicing regulatory protein 2 4
MIRT483798 CYP2W1 cytochrome P450 family 2 subfamily W member 1 2 6
MIRT486087 SLC7A5 solute carrier family 7 member 5 2 4
MIRT486304 SIPA1 signal-induced proliferation-associated 1 2 2
MIRT486490 MYH11 myosin heavy chain 11 2 2
MIRT486881 TSPYL4 TSPY like 4 2 2
MIRT487125 NCOR2 nuclear receptor corepressor 2 2 2
MIRT487542 TM6SF2 transmembrane 6 superfamily member 2 2 4
MIRT487676 B3GALT5 beta-1,3-galactosyltransferase 5 2 4
MIRT489251 TTLL1 tubulin tyrosine ligase like 1 2 4
MIRT489276 RBM8A RNA binding motif protein 8A 2 8
MIRT489496 CRLF3 cytokine receptor like factor 3 2 4
MIRT489571 SSBP2 single stranded DNA binding protein 2 2 2
MIRT489694 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT490166 TMEM63C transmembrane protein 63C 2 2
MIRT491199 MLLT1 MLLT1, super elongation complex subunit 2 4
MIRT491260 DHX40 DEAH-box helicase 40 2 2
MIRT491385 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT491548 YAE1D1 Yae1 domain containing 1 2 2
MIRT492722 PHF12 PHD finger protein 12 2 2
MIRT493866 FAM73B mitoguardin 2 2 4
MIRT494549 BAK1 BCL2 antagonist/killer 1 2 2
MIRT498586 KRT8 keratin 8 2 2
MIRT498722 SNTN sentan, cilia apical structure protein 2 6
MIRT499982 HIST1H2BD histone cluster 1 H2B family member d 2 4
MIRT503414 SLC25A45 solute carrier family 25 member 45 2 6
MIRT508491 FTO FTO, alpha-ketoglutarate dependent dioxygenase 2 2
MIRT508877 METTL14 methyltransferase like 14 2 2
MIRT509622 RRP7A ribosomal RNA processing 7 homolog A 2 4
MIRT510104 IRAK3 interleukin 1 receptor associated kinase 3 2 8
MIRT510139 PDGFRA platelet derived growth factor receptor alpha 2 4
MIRT510353 ZNF703 zinc finger protein 703 2 6
MIRT510620 TMEM167A transmembrane protein 167A 2 4
MIRT510786 SF3B3 splicing factor 3b subunit 3 2 6
MIRT511021 NRF1 nuclear respiratory factor 1 2 2
MIRT513925 GHITM growth hormone inducible transmembrane protein 2 2
MIRT514342 DNAH17 dynein axonemal heavy chain 17 2 4
MIRT515015 SUMF2 sulfatase modifying factor 2 2 2
MIRT515246 DUSP28 dual specificity phosphatase 28 2 2
MIRT516202 RPP30 ribonuclease P/MRP subunit p30 2 2
MIRT516435 ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 motif 4 2 4
MIRT516666 ZNF860 zinc finger protein 860 2 4
MIRT518373 ZNF250 zinc finger protein 250 2 2
MIRT518930 LSG1 large 60S subunit nuclear export GTPase 1 2 2
MIRT519676 ZNF70 zinc finger protein 70 2 2
MIRT519902 ZFAND4 zinc finger AN1-type containing 4 2 4
MIRT519945 ZCCHC8 zinc finger CCHC-type containing 8 2 2
MIRT520321 UBXN2A UBX domain protein 2A 2 2
MIRT520606 TMEM41B transmembrane protein 41B 2 2
MIRT520663 TMEM11 transmembrane protein 11 2 2
MIRT520852 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT521443 RAD51 RAD51 recombinase 2 2
MIRT521671 PRKAR2A protein kinase cAMP-dependent type II regulatory subunit alpha 2 2
MIRT522281 NKAP NFKB activating protein 2 2
MIRT522333 NCKIPSD NCK interacting protein with SH3 domain 2 8
MIRT522535 MED28 mediator complex subunit 28 2 6
MIRT523478 GNG4 G protein subunit gamma 4 2 2
MIRT523672 FOPNL FGFR1OP N-terminal like 2 2
MIRT523715 FBXW2 F-box and WD repeat domain containing 2 2 4
MIRT523867 ESCO2 establishment of sister chromatid cohesion N-acetyltransferase 2 2 4
MIRT524043 DNAJC8 DnaJ heat shock protein family (Hsp40) member C8 2 2
MIRT524167 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT524928 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT526825 PHC1 polyhomeotic homolog 1 2 2
MIRT531017 TDGF1P3 teratocarcinoma-derived growth factor 1 pseudogene 3 2 2
MIRT536085 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT540681 BMP3 bone morphogenetic protein 3 2 2
MIRT541708 TMEM33 transmembrane protein 33 2 2
MIRT541755 KLF8 Kruppel like factor 8 2 2
MIRT541888 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT545714 SPTLC2 serine palmitoyltransferase long chain base subunit 2 2 2
MIRT559054 C19orf47 chromosome 19 open reading frame 47 2 4
MIRT561748 PLAGL2 PLAG1 like zinc finger 2 2 2
MIRT562365 ETV3 ETS variant 3 2 2
MIRT562821 GCFC2 GC-rich sequence DNA-binding factor 2 2 2
MIRT562900 DNAH10OS dynein axonemal heavy chain 10 opposite strand 2 2
MIRT564452 SLC35E2 solute carrier family 35 member E2 2 5
MIRT569111 ONECUT3 one cut homeobox 3 2 2
MIRT569224 SUSD1 sushi domain containing 1 2 2
MIRT570271 ARPC3 actin related protein 2/3 complex subunit 3 2 2
MIRT570498 TFIP11 tuftelin interacting protein 11 2 2
MIRT570844 GPRC5C G protein-coupled receptor class C group 5 member C 2 2
MIRT571311 TPCN2 two pore segment channel 2 2 2
MIRT572077 EXOC8 exocyst complex component 8 2 2
MIRT572116 DNAJC24 DnaJ heat shock protein family (Hsp40) member C24 2 2
MIRT573054 TRIB1 tribbles pseudokinase 1 2 2
MIRT573483 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT573656 HES6 hes family bHLH transcription factor 6 2 2
MIRT574343 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT576494 Slc35e2 solute carrier family 35, member E2 2 4
MIRT608033 UBLCP1 ubiquitin like domain containing CTD phosphatase 1 2 2
MIRT611326 NANOS1 nanos C2HC-type zinc finger 1 2 2
MIRT613660 KIAA1210 KIAA1210 2 2
MIRT615638 ATF6 activating transcription factor 6 2 2
MIRT618573 RRAD RRAD, Ras related glycolysis inhibitor and calcium channel regulator 2 2
MIRT618865 MBL2 mannose binding lectin 2 2 2
MIRT618962 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT619172 SLC16A4 solute carrier family 16 member 4 2 2
MIRT620298 AQP6 aquaporin 6 2 2
MIRT620683 RFTN2 raftlin family member 2 2 2
MIRT621637 UBXN2B UBX domain protein 2B 2 2
MIRT621993 STK4 serine/threonine kinase 4 2 2
MIRT622421 NUDT19 nudix hydrolase 19 2 2
MIRT622804 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 4
MIRT624786 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 2
MIRT624968 ZNF665 zinc finger protein 665 2 4
MIRT625479 SMAD9 SMAD family member 9 2 2
MIRT626594 ACAA2 acetyl-CoA acyltransferase 2 2 4
MIRT626708 TRIM65 tripartite motif containing 65 2 2
MIRT626975 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT627489 STRIP2 striatin interacting protein 2 2 2
MIRT628505 ZNF878 zinc finger protein 878 2 2
MIRT628533 ZNF701 zinc finger protein 701 2 2
MIRT628591 TMEM251 transmembrane protein 251 2 2
MIRT628818 SLC25A34 solute carrier family 25 member 34 2 2
MIRT628896 IGSF6 immunoglobulin superfamily member 6 2 2
MIRT628958 UBE2D4 ubiquitin conjugating enzyme E2 D4 (putative) 2 2
MIRT629005 OSBPL10 oxysterol binding protein like 10 2 2
MIRT629059 KIF1C kinesin family member 1C 2 2
MIRT629192 PAPOLA poly(A) polymerase alpha 2 2
MIRT629346 TMPRSS11BNL TMPRSS11B N-terminal like, pseudogene 2 2
MIRT629447 WIZ widely interspaced zinc finger motifs 2 2
MIRT629696 XKR4 XK related 4 2 2
MIRT629737 SCD5 stearoyl-CoA desaturase 5 2 2
MIRT629896 SPATA5 spermatogenesis associated 5 2 2
MIRT629953 GLP2R glucagon like peptide 2 receptor 2 2
MIRT630023 MTL5 testis expressed metallothionein like protein 2 2
MIRT630181 TLN1 talin 1 2 2
MIRT630325 PAQR5 progestin and adipoQ receptor family member 5 2 2
MIRT630389 MYH9 myosin heavy chain 9 2 4
MIRT630695 EXTL3 exostosin like glycosyltransferase 3 2 2
MIRT631054 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT631130 SYNJ2 synaptojanin 2 2 2
MIRT631374 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT631557 TRAF3IP2 TRAF3 interacting protein 2 2 2
MIRT631615 PCDHB11 protocadherin beta 11 2 2
MIRT631935 CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 2 4
MIRT632109 SSR1 signal sequence receptor subunit 1 2 2
MIRT632168 CCL22 C-C motif chemokine ligand 22 2 2
MIRT632445 SGTB small glutamine rich tetratricopeptide repeat containing beta 2 2
MIRT632652 NAV1 neuron navigator 1 2 2
MIRT632688 MTMR10 myotubularin related protein 10 2 2
MIRT632828 IGF1 insulin like growth factor 1 2 2
MIRT632905 FRRS1 ferric chelate reductase 1 2 2
MIRT633027 DNAL1 dynein axonemal light chain 1 2 2
MIRT633379 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT633440 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT633726 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 2 2
MIRT633832 WHAMM WAS protein homolog associated with actin, golgi membranes and microtubules 2 2
MIRT633862 ATP6V1A ATPase H+ transporting V1 subunit A 2 2
MIRT634042 NUP155 nucleoporin 155 2 2
MIRT634266 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT634374 RAP2B RAP2B, member of RAS oncogene family 2 2
MIRT634439 PDE7A phosphodiesterase 7A 2 2
MIRT634573 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT634620 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT634693 DSEL dermatan sulfate epimerase-like 2 2
MIRT634768 CD3D CD3d molecule 2 2
MIRT635024 WWTR1 WW domain containing transcription regulator 1 2 2
MIRT635384 NHLRC2 NHL repeat containing 2 2 2
MIRT635577 TTC9C tetratricopeptide repeat domain 9C 2 2
MIRT635793 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT635837 ZNF264 zinc finger protein 264 2 2
MIRT636043 ZSCAN29 zinc finger and SCAN domain containing 29 2 4
MIRT636070 ZNF280C zinc finger protein 280C 2 2
MIRT636697 ARSK arylsulfatase family member K 2 2
MIRT637438 ZNF324B zinc finger protein 324B 2 2
MIRT637582 PLD6 phospholipase D family member 6 2 2
MIRT637672 PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D 2 2
MIRT637887 SLC19A3 solute carrier family 19 member 3 2 4
MIRT638353 RBMS2 RNA binding motif single stranded interacting protein 2 2 4
MIRT638597 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT638821 CRTAP cartilage associated protein 2 2
MIRT638871 CEP97 centrosomal protein 97 2 4
MIRT639660 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT640200 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT641592 TNS4 tensin 4 2 2
MIRT644993 POLR2J3 RNA polymerase II subunit J3 2 2
MIRT645059 UQCRQ ubiquinol-cytochrome c reductase complex III subunit VII 2 2
MIRT646948 UPK3BL uroplakin 3B like 1 2 2
MIRT647306 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT648300 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT649043 SLC1A2 solute carrier family 1 member 2 2 2
MIRT649884 SLFN12L schlafen family member 12 like 2 2
MIRT650196 DOCK7 dedicator of cytokinesis 7 2 2
MIRT654789 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655667 NUP43 nucleoporin 43 2 2
MIRT655925 NDUFA4P1 NDUFA4, mitochondrial complex associated pseudogene 1 2 2
MIRT656433 MARCH6 membrane associated ring-CH-type finger 6 2 2
MIRT657713 GPC4 glypican 4 2 2
MIRT659302 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT659844 CAPZB capping actin protein of muscle Z-line beta subunit 2 2
MIRT660660 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT661308 CPM carboxypeptidase M 2 2
MIRT661473 CHMP1B charged multivesicular body protein 1B 2 2
MIRT661906 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT662064 ZNF284 zinc finger protein 284 2 2
MIRT662491 ANGPT4 angiopoietin 4 2 2
MIRT662657 LRRC47 leucine rich repeat containing 47 2 2
MIRT662804 MSRB2 methionine sulfoxide reductase B2 2 2
MIRT663164 FGFR1OP FGFR1 oncogene partner 2 2
MIRT663376 ZNF770 zinc finger protein 770 2 4
MIRT663418 ZNF607 zinc finger protein 607 2 2
MIRT663990 WDR75 WD repeat domain 75 2 2
MIRT664157 APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F 2 4
MIRT664489 POLR3K RNA polymerase III subunit K 2 2
MIRT665058 CCDC77 coiled-coil domain containing 77 2 2
MIRT665080 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT665420 WDR55 WD repeat domain 55 2 2
MIRT665716 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT665923 TBC1D19 TBC1 domain family member 19 2 4
MIRT666239 SLC38A7 solute carrier family 38 member 7 2 4
MIRT666840 PPTC7 PTC7 protein phosphatase homolog 2 2
MIRT667378 MOB1B MOB kinase activator 1B 2 2
MIRT667573 LONRF2 LON peptidase N-terminal domain and ring finger 2 2 2
MIRT667894 ING1 inhibitor of growth family member 1 2 2
MIRT667977 HECTD3 HECT domain E3 ubiquitin protein ligase 3 2 2
MIRT668197 GCNT4 glucosaminyl (N-acetyl) transferase 4, core 2 2 2
MIRT668279 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT668386 FAT3 FAT atypical cadherin 3 2 2
MIRT668444 FAM208A family with sequence similarity 208 member A 2 2
MIRT668998 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT669180 CCNF cyclin F 2 2
MIRT669444 ATL3 atlastin GTPase 3 2 2
MIRT669661 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT669890 KIAA0754 KIAA0754 2 4
MIRT669973 SSR3 signal sequence receptor subunit 3 2 2
MIRT670153 SLC29A4 solute carrier family 29 member 4 2 2
MIRT670240 TRIM13 tripartite motif containing 13 2 2
MIRT670274 CBY3 chibby family member 3 2 2
MIRT670358 ULBP3 UL16 binding protein 3 2 4
MIRT670627 BVES blood vessel epicardial substance 2 2
MIRT670731 HOOK3 hook microtubule tethering protein 3 2 2
MIRT670770 TRIM66 tripartite motif containing 66 2 2
MIRT670913 DESI1 desumoylating isopeptidase 1 2 2
MIRT671216 CLSTN1 calsyntenin 1 2 2
MIRT671398 ERCC6L2 ERCC excision repair 6 like 2 2 2
MIRT671427 TOX4 TOX high mobility group box family member 4 2 2
MIRT671654 TRUB2 TruB pseudouridine synthase family member 2 2 4
MIRT671702 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT672136 PLEKHH1 pleckstrin homology, MyTH4 and FERM domain containing H1 2 2
MIRT672395 SLC10A6 solute carrier family 10 member 6 2 2
MIRT672508 GGCX gamma-glutamyl carboxylase 2 2
MIRT672572 RNF24 ring finger protein 24 2 2
MIRT672789 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT673019 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT673190 C10orf76 chromosome 10 open reading frame 76 2 2
MIRT673372 ZNF124 zinc finger protein 124 2 2
MIRT673495 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 6
MIRT673852 CAPN7 calpain 7 2 2
MIRT673929 ZNF500 zinc finger protein 500 2 2
MIRT673986 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT674076 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT674123 RPL7L1 ribosomal protein L7 like 1 2 2
MIRT674297 THAP5 THAP domain containing 5 2 2
MIRT674370 POLR3D RNA polymerase III subunit D 2 2
MIRT674641 NKRF NFKB repressing factor 2 2
MIRT674665 PLCE1 phospholipase C epsilon 1 2 2
MIRT674725 ZNF451 zinc finger protein 451 2 4
MIRT674779 NPR1 natriuretic peptide receptor 1 2 2
MIRT674889 RASSF9 Ras association domain family member 9 2 2
MIRT675017 SNX1 sorting nexin 1 2 2
MIRT675341 KLHL26 kelch like family member 26 2 2
MIRT675416 CLEC7A C-type lectin domain containing 7A 2 2
MIRT675497 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT675615 EHD2 EH domain containing 2 2 2
MIRT675735 AHR aryl hydrocarbon receptor 2 2
MIRT675857 ATP1B4 ATPase Na+/K+ transporting family member beta 4 2 2
MIRT675990 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676213 TMEM91 transmembrane protein 91 2 2
MIRT676406 MRO maestro 2 2
MIRT677299 CPSF2 cleavage and polyadenylation specific factor 2 2 2
MIRT677387 PCNP PEST proteolytic signal containing nuclear protein 2 2
MIRT677859 ABI2 abl interactor 2 2 2
MIRT677965 ITGB3 integrin subunit beta 3 2 2
MIRT678175 CRCP CGRP receptor component 2 2
MIRT678273 PTRH2 peptidyl-tRNA hydrolase 2 2 2
MIRT678665 SCUBE3 signal peptide, CUB domain and EGF like domain containing 3 2 2
MIRT679003 TTC39B tetratricopeptide repeat domain 39B 2 2
MIRT679053 RMDN1 regulator of microtubule dynamics 1 2 2
MIRT679461 RHOF ras homolog family member F, filopodia associated 2 2
MIRT679513 RAB36 RAB36, member RAS oncogene family 2 2
MIRT679914 ZKSCAN3 zinc finger with KRAB and SCAN domains 3 2 2
MIRT680029 OSBPL2 oxysterol binding protein like 2 2 4
MIRT680245 NDUFA7 NADH:ubiquinone oxidoreductase subunit A7 2 2
MIRT680279 AKIP1 A-kinase interacting protein 1 2 2
MIRT680499 PRIM2 DNA primase subunit 2 2 2
MIRT680586 ZNF573 zinc finger protein 573 2 2
MIRT680629 KIAA1456 KIAA1456 2 2
MIRT680819 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT680998 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 2 2
MIRT681122 INTS7 integrator complex subunit 7 2 2
MIRT681161 IBA57 IBA57 homolog, iron-sulfur cluster assembly 2 2
MIRT681221 DUSP19 dual specificity phosphatase 19 2 2
MIRT681304 IKZF3 IKAROS family zinc finger 3 2 2
MIRT681341 BRI3BP BRI3 binding protein 2 2
MIRT681608 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT681779 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT681892 SLC11A2 solute carrier family 11 member 2 2 2
MIRT682084 ITGA3 integrin subunit alpha 3 2 4
MIRT682139 SMS spermine synthase 2 2
MIRT682217 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT682367 PHACTR4 phosphatase and actin regulator 4 2 2
MIRT682535 EXOSC2 exosome component 2 2 2
MIRT682618 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT683643 ZNF695 zinc finger protein 695 2 2
MIRT684008 FOLR1 folate receptor 1 2 2
MIRT684442 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT684855 ZNF749 zinc finger protein 749 2 2
MIRT684956 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT685044 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685095 DTD2 D-tyrosyl-tRNA deacylase 2 (putative) 2 2
MIRT685382 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT685456 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT685810 SLC27A1 solute carrier family 27 member 1 2 2
MIRT685913 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT686665 TMEM120B transmembrane protein 120B 2 2
MIRT686955 SFT2D2 SFT2 domain containing 2 2 2
MIRT687118 QPCTL glutaminyl-peptide cyclotransferase like 2 2
MIRT687739 KIAA1328 KIAA1328 2 2
MIRT688063 GLUL glutamate-ammonia ligase 2 2
MIRT688191 FNIP1 folliculin interacting protein 1 2 2
MIRT688769 CDH7 cadherin 7 2 2
MIRT688979 ATP6AP1 ATPase H+ transporting accessory protein 1 2 2
MIRT689572 NUDT7 nudix hydrolase 7 2 2
MIRT689683 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT689930 MANSC1 MANSC domain containing 1 2 2
MIRT690089 PNMA2 paraneoplastic Ma antigen 2 2 2
MIRT690190 C5orf45 MRN complex interacting protein 2 2
MIRT690246 CAMLG calcium modulating ligand 2 2
MIRT690411 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT690840 DSN1 DSN1 homolog, MIS12 kinetochore complex component 2 2
MIRT690889 FUT2 fucosyltransferase 2 2 2
MIRT691107 ADIPOQ adiponectin, C1Q and collagen domain containing 2 2
MIRT691229 DFNB59 pejvakin 2 2
MIRT691300 ZNF681 zinc finger protein 681 2 2
MIRT691366 GP5 glycoprotein V platelet 2 2
MIRT691797 WARS tryptophanyl-tRNA synthetase 2 2
MIRT692142 CEP104 centrosomal protein 104 2 2
MIRT692572 NCMAP non-compact myelin associated protein 2 2
MIRT692649 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT692744 NDUFS5 NADH:ubiquinone oxidoreductase subunit S5 2 2
MIRT693092 SCNM1 sodium channel modifier 1 2 2
MIRT693296 SYTL3 synaptotagmin like 3 2 2
MIRT693392 ZNF460 zinc finger protein 460 2 2
MIRT693530 ZNF708 zinc finger protein 708 2 2
MIRT693562 PIGR polymeric immunoglobulin receptor 2 2
MIRT694492 AGBL5 ATP/GTP binding protein like 5 2 2
MIRT694722 LLGL1 LLGL1, scribble cell polarity complex component 2 2
MIRT694866 ZNF417 zinc finger protein 417 2 2
MIRT695070 ZNF17 zinc finger protein 17 2 2
MIRT695451 COX18 COX18, cytochrome c oxidase assembly factor 2 2
MIRT695724 ZNF117 zinc finger protein 117 2 2
MIRT695898 MED16 mediator complex subunit 16 2 2
MIRT696244 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT696259 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT696512 C3 complement C3 2 2
MIRT696560 TTC21B tetratricopeptide repeat domain 21B 2 2
MIRT696643 AGXT2 alanine--glyoxylate aminotransferase 2 2 2
MIRT696791 DHODH dihydroorotate dehydrogenase (quinone) 2 2
MIRT696819 PLLP plasmolipin 2 2
MIRT697088 GPKOW G-patch domain and KOW motifs 2 2
MIRT697153 INMT indolethylamine N-methyltransferase 2 2
MIRT697202 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697322 ZNF641 zinc finger protein 641 2 2
MIRT697578 YME1L1 YME1 like 1 ATPase 2 2
MIRT697619 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT698619 TES testin LIM domain protein 2 2
MIRT698804 STK38 serine/threonine kinase 38 2 2
MIRT698949 SPAST spastin 2 2
MIRT699083 SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 2 2
MIRT699430 SLC1A5 solute carrier family 1 member 5 2 2
MIRT699550 SIT1 signaling threshold regulating transmembrane adaptor 1 2 2
MIRT700324 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT700360 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT700462 PURB purine rich element binding protein B 2 2
MIRT701677 MYADM myeloid associated differentiation marker 2 2
MIRT701757 MSL2 MSL complex subunit 2 2 2
MIRT701977 MIER3 MIER family member 3 2 2
MIRT703178 GPBP1 GC-rich promoter binding protein 1 2 2
MIRT703203 GOLGA3 golgin A3 2 2
MIRT703359 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT703425 FYTTD1 forty-two-three domain containing 1 2 2
MIRT703484 FNDC3B fibronectin type III domain containing 3B 2 2
MIRT703590 FBXO45 F-box protein 45 2 2
MIRT703806 EVI5 ecotropic viral integration site 5 2 2
MIRT703915 EPG5 ectopic P-granules autophagy protein 5 homolog 2 2
MIRT704234 DHDDS dehydrodolichyl diphosphate synthase subunit 2 2
MIRT704646 CLCC1 chloride channel CLIC like 1 2 2
MIRT705151 C11orf58 chromosome 11 open reading frame 58 2 2
MIRT705480 ASXL2 additional sex combs like 2, transcriptional regulator 2 2
MIRT705530 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT705661 ANKRD40 ankyrin repeat domain 40 2 2
MIRT706144 ZNF674 zinc finger protein 674 2 2
MIRT706473 SNX27 sorting nexin family member 27 2 2
MIRT708254 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT708838 SCAND3 zinc finger BED-type containing 9 1 1
MIRT710437 BTNL3 butyrophilin like 3 2 2
MIRT711325 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT716151 RBM48 RNA binding motif protein 48 2 2
MIRT717402 ZCCHC24 zinc finger CCHC-type containing 24 2 2
MIRT720866 ADCY5 adenylate cyclase 5 2 2
MIRT722226 ZNF503 zinc finger protein 503 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-1273h-5p Paclitaxel 36314 NSC125973 approved sensitive High Ovarian Cancer cell line (SKOV3)
hsa-miR-1273h-5p Tripterygium wilfordii Hook F resistant tissue
hsa-miR-1273h-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (MGC-803)

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