pre-miRNA Information
pre-miRNA hsa-mir-4282   
Genomic Coordinates chr6: 72967687 - 72967753
Description Homo sapiens miR-4282 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4282
Sequence 40| UAAAAUUUGCAUCCAGGA |57
Evidence Experimental
Experiments SOLiD
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN32074657 13 COSMIC
COSN6331413 18 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1195771339 5 dbSNP
rs755058572 6 dbSNP
rs1245753664 11 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol KANSL1   
Synonyms CENP-36, KDVS, KIAA1267, MSL1v1, NSL1, hMSL1v1
Description KAT8 regulatory NSL complex subunit 1
Transcript NM_015443   
Expression
Putative miRNA Targets on KANSL1
3'UTR of KANSL1
(miRNA target sites are highlighted)
>KANSL1|NM_015443|3'UTR
   1 GCGGGAGACAGCCATCTAAACAGACTCACTAACTATTGGCATTAAAGCTTCAGAAATCTCTGCGTTTGATATTCAAACAT
  81 CATATGCCGGAAATTTTCACAGTTTTTAGTGAACTTAAGGAATTTAGATCCTACTTTGGTATTTTTTTTTCTTGTTTTAA
 161 TTTTTGTTTTGTTTTTGTTTCCATGTTTTCTTGTCACACACCTGAGCACTTCCTCCCGTTGGCAAACAGAAGTTCAGGAT
 241 GAGACCCTGCTGGCCTGGTCCTGGCACATCCTCTGCACTGTTGAATCACTGGACTTACTGATCTTAGATGACCACCCCCT
 321 CCCTCACACCTGTGGGCAGGGCAGAACAGCCTGGCGGGCTACAGTTTAGCATGGCCTTCTTGAGCTAGGGTGGAATGGGG
 401 CAGGGTGCTCTGGACTCTTACCCCCTCCCCTCCCATCTGTGGCTTGGCTCTGCTGTGGCCCTCCTGGCTGGGTCCCCTTG
 481 GTTTTTCGTGCTGGAACATCCCCACCAGAGCCTCTCTGCCATAACTGCCAGCTGCTCTCCCCGAGTGCTCAGCTGGCAGA
 561 ACACCTTTCCTTTCTCACCCAGAACTTAAGAGACTGATTTTTTGTTTCATCTGCATTTGGTCTTCTCTGTTTTGACTCTT
 641 TCACTGCAGTAACCTGGCTGTGGCTGCTCAGGTTCCCCTCCTCATGCCCCTTGGTACCCTTCCCTGTCTGCTCTCCCATG
 721 CCATGTACACACCCACAACCCGTCCTTCCACTTGGAATATTTTTACCACCTATCCTGATCTTTGAAGGTAGGGTTAGGAC
 801 TACTTAACCTCTATTCCCACTCCCCTGCAAACTGGGGGTTGTGGGAAGTGAGCAGCCATCTCCCTGTGTGATTTTTTTTT
 881 TTTTTCCCTCTGATTCACTTTGCCATGTTTCCTTCACATCCAGATCCCTGTCGGTGTTAGTTCCACTCTTGGTCTTTCAC
 961 GCTCCCCTTGCCTGTGGAACATTGTCTGGTCCTAGCTGTGGTTCCCATTGTTCCCCCTTCACCCTTCTCTGTTAACCTTG
1041 TGCCTGTCTCCTGTATGATCACATCACCAAAAAGGGGGAGGGGGGAGAAGACTCTTTTTTTTTGGCCATTTTGTAATCGT
1121 ATAAAAATAGTAGACAACTGCTTAATGGTTGGGGTTTTTTCACAATTTTCAACATTAGTGATTTTTTTTTCTGTTTGCAA
1201 GTTAAAGGGTTTGTCATTGTTTCTTTAAAAAAAAATACAATAATGCACCATATCCCTATGCATAAAGTGCTTCTTCTATT
1281 TATAAGGTTGAAAATTCTGAATAACCCTTTTAGCATTGAAAAAAAAAACAAAAACAAAAAATGGAAAAAAAAAACCTTGT
1361 ATTTTGTAAATATTTTCTTTTCCTGCTTTGGAGCTGTGTAATGGCAGCGAAACATGTAGCTGTCTTTGTTCTATAGAAAT
1441 GCTTTTCTTCAGAGAAGCTGATCTTTGTTAATGTCTTGATTCTGTTCGCAAAGCACAGACTAGTGCTTAAAAAAAAAAAA
1521 GAAGGAAAAATTGAAAAAAATAAAAAAAAAAGTTACAGAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' agGACCUACGUUUAAAAu 5'
            :||||   | ||||| 
Target 5' acTTGGA---ATATTTTt 3'
750 - 764 117.00 -6.60
2
miRNA  3' agGACCUACGUUUAAaau 5'
            |||  |||||:||   
Target 5' ttCTGTTTGCAAGTTaaa 3'
1189 - 1206 108.00 -10.02
3
miRNA  3' agGACCUACGUUUAAAAu 5'
            |||  ||::| |||| 
Target 5' ccCTG--TGTGATTTTTt 3'
862 - 877 108.00 -7.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
391464 2 ClinVar
381968 3 ClinVar
323761 36 ClinVar
323760 38 ClinVar
323759 217 ClinVar
323758 360 ClinVar
323757 388 ClinVar
323756 487 ClinVar
323754 626 ClinVar
323752 640 ClinVar
323751 742 ClinVar
323749 886 ClinVar
323748 954 ClinVar
323746 1027 ClinVar
323745 1028 ClinVar
323744 1104 ClinVar
323743 1196 ClinVar
323741 1236 ClinVar
323742 1236 ClinVar
323738 1329 ClinVar
323735 1355 ClinVar
323736 1355 ClinVar
323731 1521 ClinVar
323732 1521 ClinVar
323730 1552 ClinVar
COSN23669300 3 COSMIC
COSN30480583 5 COSMIC
COSN31542880 63 COSMIC
COSN31598717 63 COSMIC
COSN30176262 68 COSMIC
COSN31518995 88 COSMIC
COSN31491287 120 COSMIC
COSN22816383 141 COSMIC
COSN28878956 142 COSMIC
COSN4769228 241 COSMIC
COSN31579872 253 COSMIC
COSN20114044 355 COSMIC
COSN25784081 401 COSMIC
COSN25229791 540 COSMIC
COSN16073428 542 COSMIC
COSN8837408 703 COSMIC
COSN20114043 871 COSMIC
COSN28988513 872 COSMIC
COSN22555722 876 COSMIC
COSN8837407 984 COSMIC
COSN20114042 1226 COSMIC
COSN31548922 1231 COSMIC
COSN29586879 1318 COSMIC
COSN20114040 1319 COSMIC
COSN31489110 1478 COSMIC
COSN31517507 1487 COSMIC
COSN20114038 1509 COSMIC
COSN24306242 1541 COSMIC
COSN24305899 1542 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1173885709 1 dbSNP
rs774194245 2 dbSNP
rs372125138 3 dbSNP
rs901807508 4 dbSNP
rs1361944933 7 dbSNP
rs775460035 8 dbSNP
rs769590171 9 dbSNP
rs1304244642 10 dbSNP
rs746012943 15 dbSNP
rs1231071714 16 dbSNP
rs567243937 17 dbSNP
rs776352811 18 dbSNP
rs1449330951 19 dbSNP
rs1323279372 25 dbSNP
rs1331969624 26 dbSNP
rs747161928 30 dbSNP
rs1377535849 31 dbSNP
rs768138439 31 dbSNP
rs1335580355 35 dbSNP
rs767896466 36 dbSNP
rs373668834 38 dbSNP
rs1168911624 41 dbSNP
rs778296615 45 dbSNP
rs553624358 47 dbSNP
rs1229182895 48 dbSNP
rs1182791468 51 dbSNP
rs1275311912 56 dbSNP
rs1020982547 60 dbSNP
rs943068318 63 dbSNP
rs1266402208 84 dbSNP
rs1429596239 84 dbSNP
rs1201057168 86 dbSNP
rs752732089 88 dbSNP
rs1245766208 89 dbSNP
rs1448378807 93 dbSNP
rs546370187 114 dbSNP
rs1423274696 115 dbSNP
rs1043475663 134 dbSNP
rs76025910 141 dbSNP
rs778823729 145 dbSNP
rs78288850 150 dbSNP
rs1001626132 151 dbSNP
rs1035821925 151 dbSNP
rs905971553 151 dbSNP
rs1448700368 154 dbSNP
rs947552634 162 dbSNP
rs913401170 167 dbSNP
rs1282036143 171 dbSNP
rs1299903735 177 dbSNP
rs1367349996 181 dbSNP
rs989036321 182 dbSNP
rs754855855 183 dbSNP
rs1242519535 184 dbSNP
rs1356812096 185 dbSNP
rs938927477 190 dbSNP
rs1211367233 193 dbSNP
rs928904706 201 dbSNP
rs1265892709 207 dbSNP
rs763093998 208 dbSNP
rs1006660959 209 dbSNP
rs980084725 216 dbSNP
rs140200874 217 dbSNP
rs1016332766 218 dbSNP
rs1421485926 218 dbSNP
rs985292957 219 dbSNP
rs1284169061 229 dbSNP
rs1369518617 231 dbSNP
rs1459806070 241 dbSNP
rs1225521194 249 dbSNP
rs1421249799 255 dbSNP
rs1388256066 264 dbSNP
rs1047456876 266 dbSNP
rs929907898 268 dbSNP
rs1404017743 269 dbSNP
rs1395477046 270 dbSNP
rs1311962418 281 dbSNP
rs1340955898 284 dbSNP
rs950545981 287 dbSNP
rs1026563610 290 dbSNP
rs750626539 297 dbSNP
rs1328130044 298 dbSNP
rs557530485 298 dbSNP
rs537145609 300 dbSNP
rs759242187 304 dbSNP
rs1347488375 308 dbSNP
rs767649413 315 dbSNP
rs865959422 318 dbSNP
rs868488291 319 dbSNP
rs1269577623 320 dbSNP
rs1457049015 320 dbSNP
rs1407230915 322 dbSNP
rs1482009195 323 dbSNP
rs112051212 325 dbSNP
rs1257544953 329 dbSNP
rs910997692 335 dbSNP
rs1180558476 347 dbSNP
rs1017498972 351 dbSNP
rs776107572 353 dbSNP
rs1432398390 355 dbSNP
rs1007157801 356 dbSNP
rs200384907 356 dbSNP
rs113448888 360 dbSNP
rs978494820 363 dbSNP
rs903544100 366 dbSNP
rs1423995525 367 dbSNP
rs1161676422 377 dbSNP
rs1357603344 378 dbSNP
rs1186644514 380 dbSNP
rs968821569 385 dbSNP
rs367998611 388 dbSNP
rs1402893449 391 dbSNP
rs1240311755 398 dbSNP
rs1306049294 399 dbSNP
rs1349678512 401 dbSNP
rs1228740369 405 dbSNP
rs762158298 407 dbSNP
rs945125361 408 dbSNP
rs988842186 415 dbSNP
rs1256070945 419 dbSNP
rs1483909414 420 dbSNP
rs892252377 421 dbSNP
rs182071752 422 dbSNP
rs554651362 423 dbSNP
rs1035877419 424 dbSNP
rs763541489 426 dbSNP
rs1001678553 428 dbSNP
rs1184745162 429 dbSNP
rs938858367 432 dbSNP
rs751575389 439 dbSNP
rs970184139 440 dbSNP
rs144386890 442 dbSNP
rs149673847 448 dbSNP
rs1427849690 450 dbSNP
rs1166679142 451 dbSNP
rs948671739 452 dbSNP
rs909219514 455 dbSNP
rs191706665 460 dbSNP
rs1300792640 461 dbSNP
rs764279233 466 dbSNP
rs1006298467 467 dbSNP
rs532137925 471 dbSNP
rs186913097 474 dbSNP
rs17652961 487 dbSNP
rs965867183 488 dbSNP
rs35349036 504 dbSNP
rs1017445052 510 dbSNP
rs1207807016 512 dbSNP
rs1007437326 519 dbSNP
rs901106157 521 dbSNP
rs1407471957 530 dbSNP
rs549897622 532 dbSNP
rs942536883 537 dbSNP
rs1192020827 542 dbSNP
rs182060151 543 dbSNP
rs776007238 547 dbSNP
rs1358239634 559 dbSNP
rs1389541779 565 dbSNP
rs1430326919 566 dbSNP
rs1170655045 568 dbSNP
rs1347917130 571 dbSNP
rs560953214 578 dbSNP
rs1293781873 582 dbSNP
rs1022378860 585 dbSNP
rs1432321323 588 dbSNP
rs1009271335 589 dbSNP
rs1043237843 590 dbSNP
rs1366641816 590 dbSNP
rs1216831083 592 dbSNP
rs1321531498 596 dbSNP
rs139454638 596 dbSNP
rs1222737832 604 dbSNP
rs886053067 608 dbSNP
rs912938302 610 dbSNP
rs770095702 611 dbSNP
rs1244859288 621 dbSNP
rs533537317 626 dbSNP
rs1482784109 627 dbSNP
rs959677140 629 dbSNP
rs886053066 637 dbSNP
rs17574361 640 dbSNP
rs1423067890 642 dbSNP
rs1205417776 657 dbSNP
rs1165188895 659 dbSNP
rs1309474040 669 dbSNP
rs1396293466 675 dbSNP
rs1272661187 682 dbSNP
rs776223913 682 dbSNP
rs1455310090 684 dbSNP
rs1282514469 688 dbSNP
rs770486856 690 dbSNP
rs1319388066 693 dbSNP
rs907384123 703 dbSNP
rs1044634669 706 dbSNP
rs1432242851 713 dbSNP
rs551056408 716 dbSNP
rs948953208 717 dbSNP
rs909500431 721 dbSNP
rs1049518868 724 dbSNP
rs1379054616 729 dbSNP
rs929346121 732 dbSNP
rs1384251780 733 dbSNP
rs1327441487 738 dbSNP
rs1208363443 741 dbSNP
rs7350928 742 dbSNP
rs1208068358 744 dbSNP
rs985327203 748 dbSNP
rs950838851 751 dbSNP
rs1378809972 757 dbSNP
rs976204534 764 dbSNP
rs1471453999 765 dbSNP
rs1157990723 770 dbSNP
rs1443999029 777 dbSNP
rs1412215385 783 dbSNP
rs1401989962 787 dbSNP
rs1352397062 790 dbSNP
rs1331608292 799 dbSNP
rs1359162538 800 dbSNP
rs965815496 808 dbSNP
rs1026792301 809 dbSNP
rs1349043891 811 dbSNP
rs1167457716 813 dbSNP
rs886053065 816 dbSNP
rs577559225 824 dbSNP
rs1019574491 825 dbSNP
rs1443008596 832 dbSNP
rs1006808933 833 dbSNP
rs910386118 835 dbSNP
rs561989638 838 dbSNP
rs1470956437 845 dbSNP
rs891562125 846 dbSNP
rs947181405 846 dbSNP
rs967932272 857 dbSNP
rs1022242826 858 dbSNP
rs1369211640 861 dbSNP
rs1409650576 863 dbSNP
rs1178727267 864 dbSNP
rs1481766320 871 dbSNP
rs77877023 872 dbSNP
rs1009631186 884 dbSNP
rs1249866659 885 dbSNP
rs1339958463 886 dbSNP
rs1434585074 886 dbSNP
rs1491039734 886 dbSNP
rs35400776 886 dbSNP
rs560103470 886 dbSNP
rs5820607 886 dbSNP
rs1204262345 887 dbSNP
rs1204549020 887 dbSNP
rs1273450983 889 dbSNP
rs928298669 889 dbSNP
rs1294589261 890 dbSNP
rs1245732240 892 dbSNP
rs1243175652 893 dbSNP
rs980362743 896 dbSNP
rs1388920449 904 dbSNP
rs1429664812 905 dbSNP
rs1169709832 906 dbSNP
rs1399097922 913 dbSNP
rs1403903828 913 dbSNP
rs1323176145 916 dbSNP
rs1331879115 923 dbSNP
rs777125731 926 dbSNP
rs1295491013 932 dbSNP
rs557566678 933 dbSNP
rs1308243548 952 dbSNP
rs150500194 954 dbSNP
rs1251771407 958 dbSNP
rs1035154991 960 dbSNP
rs113829708 961 dbSNP
rs1207814485 961 dbSNP
rs1245667353 964 dbSNP
rs1448289477 966 dbSNP
rs1194546439 967 dbSNP
rs1375244012 970 dbSNP
rs1003302717 974 dbSNP
rs1472036779 976 dbSNP
rs1306982817 977 dbSNP
rs1391814861 979 dbSNP
rs1405036374 981 dbSNP
rs866247914 988 dbSNP
rs984993270 991 dbSNP
rs1388031807 992 dbSNP
rs1366831878 997 dbSNP
rs1296262192 1000 dbSNP
rs1328108860 1004 dbSNP
rs950928013 1007 dbSNP
rs1283374622 1013 dbSNP
rs1457407843 1017 dbSNP
rs1234761537 1020 dbSNP
rs748062988 1022 dbSNP
rs11870461 1027 dbSNP
rs375427074 1028 dbSNP
rs976154695 1031 dbSNP
rs888008383 1037 dbSNP
rs534663923 1040 dbSNP
rs1410068430 1043 dbSNP
rs754764162 1046 dbSNP
rs1017619560 1047 dbSNP
rs919270859 1048 dbSNP
rs749102622 1050 dbSNP
rs1208129234 1052 dbSNP
rs1007531685 1055 dbSNP
rs565649466 1060 dbSNP
rs1488461949 1062 dbSNP
rs1411474243 1063 dbSNP
rs1261803681 1064 dbSNP
rs1241652562 1065 dbSNP
rs1327435716 1067 dbSNP
rs1287340918 1068 dbSNP
rs944788271 1069 dbSNP
rs910672963 1070 dbSNP
rs28553921 1073 dbSNP
rs985915837 1075 dbSNP
rs558466127 1080 dbSNP
rs946596612 1081 dbSNP
rs1385716313 1082 dbSNP
rs779954172 1088 dbSNP
rs757396562 1093 dbSNP
rs1290513929 1094 dbSNP
rs1261978881 1095 dbSNP
rs189466615 1096 dbSNP
rs374923391 1096 dbSNP
rs548139198 1096 dbSNP
rs1455445474 1098 dbSNP
rs1044049608 1102 dbSNP
rs1180446465 1104 dbSNP
rs1419888412 1104 dbSNP
rs142756815 1104 dbSNP
rs948363123 1104 dbSNP
rs1387559131 1106 dbSNP
rs569545053 1116 dbSNP
rs1480924159 1118 dbSNP
rs988090327 1118 dbSNP
rs956540674 1119 dbSNP
rs1375958374 1128 dbSNP
rs1196910599 1132 dbSNP
rs1305951899 1133 dbSNP
rs549673929 1137 dbSNP
rs1034695431 1138 dbSNP
rs1391626960 1140 dbSNP
rs1432617318 1143 dbSNP
rs929522902 1149 dbSNP
rs11539537 1154 dbSNP
rs1231857039 1161 dbSNP
rs1281732907 1163 dbSNP
rs1263052852 1165 dbSNP
rs751844327 1168 dbSNP
rs764036245 1176 dbSNP
rs758494380 1183 dbSNP
rs1179189919 1186 dbSNP
rs1395677016 1191 dbSNP
rs910610046 1191 dbSNP
rs986148064 1191 dbSNP
rs1436513631 1192 dbSNP
rs1267969567 1193 dbSNP
rs968435320 1195 dbSNP
rs137970866 1196 dbSNP
rs1462269664 1204 dbSNP
rs1299572676 1207 dbSNP
rs1365029617 1213 dbSNP
rs567201128 1221 dbSNP
rs887963961 1227 dbSNP
rs1272671932 1232 dbSNP
rs140510364 1236 dbSNP
rs955940898 1236 dbSNP
rs1308475611 1237 dbSNP
rs1028286613 1240 dbSNP
rs1263948668 1244 dbSNP
rs1488270523 1245 dbSNP
rs1031926441 1250 dbSNP
rs547375618 1251 dbSNP
rs556641274 1255 dbSNP
rs527324885 1259 dbSNP
rs183793920 1272 dbSNP
rs1186630691 1276 dbSNP
rs1447680884 1276 dbSNP
rs771885571 1278 dbSNP
rs1394911635 1282 dbSNP
rs1428955485 1283 dbSNP
rs1172256764 1284 dbSNP
rs993765382 1285 dbSNP
rs1347830462 1286 dbSNP
rs886053064 1287 dbSNP
rs552931988 1288 dbSNP
rs1326091736 1290 dbSNP
rs898109168 1291 dbSNP
rs1396054075 1295 dbSNP
rs541570663 1304 dbSNP
rs886053063 1306 dbSNP
rs1288837011 1307 dbSNP
rs1363244997 1316 dbSNP
rs1432879209 1318 dbSNP
rs1311021467 1319 dbSNP
rs1334549258 1320 dbSNP
rs1044105690 1322 dbSNP
rs1012563461 1329 dbSNP
rs1208167600 1329 dbSNP
rs71665335 1329 dbSNP
rs887429997 1329 dbSNP
rs1364363028 1330 dbSNP
rs1049356938 1333 dbSNP
rs1470819669 1335 dbSNP
rs1474728842 1335 dbSNP
rs1455232817 1336 dbSNP
rs1317001949 1338 dbSNP
rs929549668 1339 dbSNP
rs1040343025 1340 dbSNP
rs1301554430 1341 dbSNP
rs1355262577 1341 dbSNP
rs1415748605 1342 dbSNP
rs1295404304 1343 dbSNP
rs532837667 1344 dbSNP
rs1327327198 1345 dbSNP
rs1223360311 1346 dbSNP
rs886053062 1350 dbSNP
rs563924578 1354 dbSNP
rs1217885374 1355 dbSNP
rs1485243815 1355 dbSNP
rs67641084 1355 dbSNP
rs886053061 1355 dbSNP
rs1465619864 1356 dbSNP
rs1259249695 1370 dbSNP
rs1471403209 1373 dbSNP
rs1373777177 1383 dbSNP
rs11539536 1389 dbSNP
rs1190590475 1398 dbSNP
rs760101658 1402 dbSNP
rs1040576904 1408 dbSNP
rs1375351409 1409 dbSNP
rs781388886 1409 dbSNP
rs7502673 1410 dbSNP
rs543626880 1414 dbSNP
rs915088423 1415 dbSNP
rs1315177862 1417 dbSNP
rs886053060 1433 dbSNP
rs886053059 1434 dbSNP
rs776847930 1442 dbSNP
rs1280305941 1444 dbSNP
rs574879269 1464 dbSNP
rs1276069084 1468 dbSNP
rs1375653613 1471 dbSNP
rs986202187 1481 dbSNP
rs1278162237 1487 dbSNP
rs147415592 1488 dbSNP
rs1282203616 1493 dbSNP
rs1047606 1495 dbSNP
rs1435817118 1501 dbSNP
rs1199465338 1502 dbSNP
rs759428148 1505 dbSNP
rs1233070500 1518 dbSNP
rs935260350 1519 dbSNP
rs75210291 1520 dbSNP
rs11539535 1521 dbSNP
rs1455092333 1521 dbSNP
rs67801660 1521 dbSNP
rs75187918 1521 dbSNP
rs886053058 1521 dbSNP
rs915224810 1521 dbSNP
rs968110171 1521 dbSNP
rs988123041 1523 dbSNP
rs1339640463 1524 dbSNP
rs1356471550 1524 dbSNP
rs769319125 1525 dbSNP
rs1371735394 1526 dbSNP
rs142803832 1532 dbSNP
rs1031523000 1541 dbSNP
rs1305486957 1541 dbSNP
rs1002681481 1542 dbSNP
rs1315586365 1545 dbSNP
rs1022702747 1552 dbSNP
rs1273345732 1552 dbSNP
rs1439193045 1552 dbSNP
rs767830420 1552 dbSNP
rs886053057 1552 dbSNP
rs887493893 1552 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545212. RNA binding protein: AGO1. Condition:Control ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 284058.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 "PAR-CLIP data was present in GSM714645. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 3 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
Experimental Support 4 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions MCF7
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in SRR1045082. RNA binding protein: AGO2. Condition:Untreated ...

- Farazi TA; Ten Hoeve JJ; Brown M; et al., 2014, Genome biology.

Article - Farazi TA; Ten Hoeve JJ; Brown M; et al.
- Genome biology, 2014
BACKGROUND: Various microRNAs (miRNAs) are up- or downregulated in tumors. However, the repression of cognate miRNA targets responsible for the phenotypic effects of this dysregulation in patients remains largely unexplored. To define miRNA targets and associated pathways, together with their relationship to outcome in breast cancer, we integrated patient-paired miRNA-mRNA expression data with a set of validated miRNA targets and pathway inference. RESULTS: To generate a biochemically-validated set of miRNA-binding sites, we performed argonaute-2 photoactivatable-ribonucleoside-enhanced crosslinking and immunoprecipitation (AGO2-PAR-CLIP) in MCF7 cells. We then defined putative miRNA-target interactions using a computational model, which ranked and selected additional TargetScan-predicted interactions based on features of our AGO2-PAR-CLIP binding-site data. We subselected modeled interactions according to the abundance of their constituent miRNA and mRNA transcripts in tumors, and we took advantage of the variability of miRNA expression within molecular subtypes to detect miRNA repression. Interestingly, our data suggest that miRNA families control subtype-specific pathways; for example, miR-17, miR-19a, miR-25, and miR-200b show high miRNA regulatory activity in the triple-negative, basal-like subtype, whereas miR-22 and miR-24 do so in the HER2 subtype. An independent dataset validated our findings for miR-17 and miR-25, and showed a correlation between the expression levels of miR-182 targets and overall patient survival. Pathway analysis associated miR-17, miR-19a, and miR-200b with leukocyte transendothelial migration. CONCLUSIONS: We combined PAR-CLIP data with patient expression data to predict regulatory miRNAs, revealing potential therapeutic targets and prognostic markers in breast cancer.
LinkOut: [PMID: 24398324]
CLIP-seq Support 1 for dataset GSM545212
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / Control
Location of target site ENST00000574590.1 | 3UTR | AUAUUCAAACAUCAUAUGCCGGAAAUUUUCACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000574590.1 | 3UTR | AAUCUCUGCGUUUGAUAUUCAAACAUCAUAUGCCGGAAAUUUUCACAGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM714645
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000574590.1 | 3UTR | AUAUUCAAACAUCAUAUGCCGGAAAUUUUCACAGUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset SRR1045082
Method / RBP PAR-CLIP / AGO2
Cell line / Condition MCF7 / Untreated
Location of target site ENST00000574590.1 | 3UTR | AUAUUCAAACAUCAUAUGCCGGAAAUUUUCACAGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 24398324 / SRX388831
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000574590.1 | 3UTR | AUAUUCAAACAUCAUAUGCCGGAAAUUUUCACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
280 hsa-miR-4282 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057628 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT060732 RPS3 ribosomal protein S3 2 2
MIRT063371 ETNK1 ethanolamine kinase 1 2 2
MIRT066257 LRIG3 leucine rich repeats and immunoglobulin like domains 3 2 4
MIRT070774 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT070871 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 4
MIRT078056 PCTP phosphatidylcholine transfer protein 2 2
MIRT078408 DCAF7 DDB1 and CUL4 associated factor 7 2 4
MIRT084059 PPP1R3D protein phosphatase 1 regulatory subunit 3D 2 2
MIRT093537 GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 2 6
MIRT096072 SFXN1 sideroflexin 1 2 2
MIRT098316 REV3L REV3 like, DNA directed polymerase zeta catalytic subunit 2 2
MIRT100493 UHRF1BP1 UHRF1 binding protein 1 2 2
MIRT102254 HBP1 HMG-box transcription factor 1 2 4
MIRT105318 VPS37A VPS37A, ESCRT-I subunit 2 2
MIRT114143 MZT1 mitotic spindle organizing protein 1 2 4
MIRT114873 DICER1 dicer 1, ribonuclease III 2 2
MIRT134683 PNRC2 proline rich nuclear receptor coactivator 2 2 2
MIRT137640 RCOR1 REST corepressor 1 2 2
MIRT155449 CCNT2 cyclin T2 2 4
MIRT165656 DCTN4 dynactin subunit 4 2 2
MIRT177570 CSTF2T cleavage stimulation factor subunit 2 tau variant 2 4
MIRT188514 E2F7 E2F transcription factor 7 2 10
MIRT193019 TMOD3 tropomodulin 3 2 4
MIRT195823 GADD45A growth arrest and DNA damage inducible alpha 2 2
MIRT195885 DEPDC1 DEP domain containing 1 2 6
MIRT206029 NUP50 nucleoporin 50 2 6
MIRT212148 CLCN3 chloride voltage-gated channel 3 2 2
MIRT213999 DCP2 decapping mRNA 2 2 2
MIRT214650 HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 2 2
MIRT221568 CBX3 chromobox 3 2 2
MIRT224544 ZNF623 zinc finger protein 623 2 2
MIRT227654 SET SET nuclear proto-oncogene 2 2
MIRT229992 CHIC1 cysteine rich hydrophobic domain 1 2 2
MIRT238968 QKI QKI, KH domain containing RNA binding 2 2
MIRT239825 ACTB actin beta 2 2
MIRT241084 ZXDA zinc finger, X-linked, duplicated A 2 4
MIRT244852 ZBTB5 zinc finger and BTB domain containing 5 2 2
MIRT264534 TARDBP TAR DNA binding protein 2 2
MIRT271438 SKI SKI proto-oncogene 2 2
MIRT271597 ENAH ENAH, actin regulator 2 2
MIRT294332 ZNF264 zinc finger protein 264 2 2
MIRT296341 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT301715 TEF TEF, PAR bZIP transcription factor 2 2
MIRT308549 ZNF654 zinc finger protein 654 2 2
MIRT313866 DEPDC1B DEP domain containing 1B 2 2
MIRT315529 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT321066 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT343777 NUTF2 nuclear transport factor 2 2 2
MIRT359109 MAP1B microtubule associated protein 1B 2 2
MIRT397393 GOLGA3 golgin A3 2 4
MIRT400822 CPEB2 cytoplasmic polyadenylation element binding protein 2 2 2
MIRT442171 DSEL dermatan sulfate epimerase-like 2 2
MIRT442777 JAG1 jagged 1 2 2
MIRT442862 SCARF1 scavenger receptor class F member 1 2 4
MIRT442919 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 2 2
MIRT444567 TRA2B transformer 2 beta homolog 2 2
MIRT444718 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT445018 RBMS3 RNA binding motif single stranded interacting protein 3 2 2
MIRT445853 LRRC1 leucine rich repeat containing 1 2 2
MIRT446242 HELZ helicase with zinc finger 2 2
MIRT446542 GOLGA8B golgin A8 family member B 2 2
MIRT446643 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT446948 ZMAT3 zinc finger matrin-type 3 2 4
MIRT447061 KCNAB1 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 2 2
MIRT447327 ZSCAN21 zinc finger and SCAN domain containing 21 2 2
MIRT447995 CDX1 caudal type homeobox 1 2 2
MIRT448543 RHEBP1 RHEB pseudogene 1 2 6
MIRT448752 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT448772 GOLGA8A golgin A8 family member A 2 2
MIRT449342 WDR26 WD repeat domain 26 2 2
MIRT450011 SLC16A6 solute carrier family 16 member 6 2 4
MIRT450229 PCNX pecanex homolog 1 2 2
MIRT450340 MRPL17 mitochondrial ribosomal protein L17 2 4
MIRT450381 MSI2 musashi RNA binding protein 2 2 2
MIRT450759 PGGT1B protein geranylgeranyltransferase type I subunit beta 2 2
MIRT450809 NRCAM neuronal cell adhesion molecule 2 2
MIRT450947 ATAD2 ATPase family, AAA domain containing 2 2 2
MIRT459095 CCPG1 cell cycle progression 1 2 2
MIRT462428 TWISTNB TWIST neighbor 2 2
MIRT465200 TROVE2 TROVE domain family member 2 2 4
MIRT467382 SON SON DNA binding protein 2 4
MIRT468546 SERP1 stress associated endoplasmic reticulum protein 1 2 2
MIRT471506 PDE4D phosphodiesterase 4D 2 2
MIRT471981 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT474478 KLHL11 kelch like family member 11 2 8
MIRT475011 KANSL1 KAT8 regulatory NSL complex subunit 1 2 8
MIRT480341 C5orf51 chromosome 5 open reading frame 51 2 2
MIRT482696 TEX9 testis expressed 9 2 6
MIRT483462 YTHDF1 YTH N6-methyladenosine RNA binding protein 1 2 6
MIRT485623 FAM217B family with sequence similarity 217 member B 2 2
MIRT485714 CASP16 caspase 16, pseudogene 2 8
MIRT486279 SEC23A Sec23 homolog A, coat complex II component 2 2
MIRT491000 PEBP1 phosphatidylethanolamine binding protein 1 2 4
MIRT492594 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT493365 KIF5B kinesin family member 5B 2 2
MIRT494316 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT495208 EDN3 endothelin 3 2 2
MIRT497011 TCF15 transcription factor 15 2 2
MIRT498512 FRK fyn related Src family tyrosine kinase 2 2
MIRT498778 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT501045 SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase 2 6
MIRT502939 CDC37L1 cell division cycle 37 like 1 2 8
MIRT504806 VHL von Hippel-Lindau tumor suppressor 2 6
MIRT505656 SHMT1 serine hydroxymethyltransferase 1 2 6
MIRT505964 RAB5C RAB5C, member RAS oncogene family 2 6
MIRT506322 OTUD4 OTU deubiquitinase 4 2 4
MIRT506803 KLHL15 kelch like family member 15 2 6
MIRT506917 KBTBD8 kelch repeat and BTB domain containing 8 2 4
MIRT507400 EMC7 ER membrane protein complex subunit 7 2 8
MIRT507471 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 6
MIRT508058 ATP13A3 ATPase 13A3 2 4
MIRT508135 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT509895 RPS23 ribosomal protein S23 2 4
MIRT510881 RAN RAN, member RAS oncogene family 2 8
MIRT513766 PEX5L peroxisomal biogenesis factor 5 like 2 4
MIRT516898 COPS8 COP9 signalosome subunit 8 2 2
MIRT518703 TIMD4 T-cell immunoglobulin and mucin domain containing 4 2 4
MIRT520429 TTPAL alpha tocopherol transfer protein like 2 6
MIRT521843 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT522116 NUDT3 nudix hydrolase 3 2 4
MIRT525467 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT525583 MTRNR2L7 MT-RNR2-like 7 2 2
MIRT525906 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT526072 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT526232 MTRNR2L5 MT-RNR2-like 5 2 4
MIRT526455 FAM71F2 family with sequence similarity 71 member F2 2 4
MIRT526515 POU5F1B POU class 5 homeobox 1B 2 2
MIRT528032 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT528422 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT528995 ISLR2 immunoglobulin superfamily containing leucine rich repeat 2 2 4
MIRT529311 ATRNL1 attractin like 1 2 2
MIRT529376 SKP1 S-phase kinase associated protein 1 2 4
MIRT530015 SRRM1 serine and arginine repetitive matrix 1 2 2
MIRT530089 FMN2 formin 2 2 2
MIRT530942 ENPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 2 2
MIRT531229 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT533088 YTHDF3 YTH N6-methyladenosine RNA binding protein 3 2 2
MIRT533299 USP46 ubiquitin specific peptidase 46 2 2
MIRT533318 UNKL unkempt family like zinc finger 2 2
MIRT533721 TMEM30A transmembrane protein 30A 2 2
MIRT534096 AZF1 azoospermia factor 1 2 2
MIRT534188 SLC7A11 solute carrier family 7 member 11 2 2
MIRT534493 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT536077 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT536242 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT537524 FAM104A family with sequence similarity 104 member A 2 2
MIRT538088 DGKH diacylglycerol kinase eta 2 2
MIRT538475 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT538853 BTG1 BTG anti-proliferation factor 1 2 4
MIRT539075 GDNF glial cell derived neurotrophic factor 2 2
MIRT539480 ACVR2B activin A receptor type 2B 2 4
MIRT540210 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT541940 TSPAN2 tetraspanin 2 2 2
MIRT543812 COCH cochlin 2 2
MIRT545120 PDZRN4 PDZ domain containing ring finger 4 2 2
MIRT545571 GIMAP4 GTPase, IMAP family member 4 2 2
MIRT545989 XKR4 XK related 4 2 2
MIRT547213 PANK3 pantothenate kinase 3 2 4
MIRT547740 KIAA1468 KIAA1468 2 2
MIRT548022 GRB2 growth factor receptor bound protein 2 2 4
MIRT548032 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548102 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 4
MIRT548217 FKBP1A FK506 binding protein 1A 2 2
MIRT548588 DDX3X DEAD-box helicase 3, X-linked 2 4
MIRT548953 CDC27 cell division cycle 27 2 2
MIRT549072 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT550368 INCENP inner centromere protein 2 6
MIRT550546 MYZAP myocardial zonula adherens protein 2 2
MIRT551491 TMEM192 transmembrane protein 192 2 4
MIRT553078 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT554104 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT555127 PTPRG protein tyrosine phosphatase, receptor type G 2 2
MIRT555477 POC1B-GALNT4 POC1B-GALNT4 readthrough 2 2
MIRT555978 NPTN neuroplastin 2 2
MIRT557011 HPRT1 hypoxanthine phosphoribosyltransferase 1 2 2
MIRT557706 GALNT4 polypeptide N-acetylgalactosaminyltransferase 4 2 2
MIRT558333 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT558488 DBN1 drebrin 1 2 2
MIRT559942 ZNF567 zinc finger protein 567 2 2
MIRT561127 ATP2B1 ATPase plasma membrane Ca2+ transporting 1 2 2
MIRT561791 PAWR pro-apoptotic WT1 regulator 2 2
MIRT562438 EEF2 eukaryotic translation elongation factor 2 2 2
MIRT563102 PABPC4L poly(A) binding protein cytoplasmic 4 like 2 2
MIRT563212 ZNF813 zinc finger protein 813 2 2
MIRT563426 KIF3A kinesin family member 3A 2 2
MIRT563473 SPIN4 spindlin family member 4 2 2
MIRT564015 HSPA4 heat shock protein family A (Hsp70) member 4 2 4
MIRT564117 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT564223 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT564503 CACNG1 calcium voltage-gated channel auxiliary subunit gamma 1 2 2
MIRT564515 DUSP3 dual specificity phosphatase 3 2 2
MIRT564811 ZBTB21 zinc finger and BTB domain containing 21 2 2
MIRT565265 TPD52 tumor protein D52 2 2
MIRT566012 RHOB ras homolog family member B 2 2
MIRT566216 PTMA prothymosin, alpha 2 2
MIRT566638 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT566821 MAPK8 mitogen-activated protein kinase 8 2 2
MIRT566948 LEPROT leptin receptor overlapping transcript 2 2
MIRT567290 HNRNPAB heterogeneous nuclear ribonucleoprotein A/B 2 2
MIRT567895 CSTF2 cleavage stimulation factor subunit 2 2 2
MIRT568731 MTRNR2L3 MT-RNR2-like 3 2 2
MIRT571263 ZNF239 zinc finger protein 239 2 2
MIRT572593 EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 2 2
MIRT573827 TGOLN2 trans-golgi network protein 2 2 2
MIRT576391 Fhl2 four and a half LIM domains 2 2 2
MIRT609901 SMS spermine synthase 2 2
MIRT613710 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 2
MIRT614406 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT615042 DCX doublecortin 2 2
MIRT617514 C5orf45 MRN complex interacting protein 2 2
MIRT619476 PRDM10 PR/SET domain 10 2 2
MIRT620349 TLN1 talin 1 2 2
MIRT620910 PLA2G7 phospholipase A2 group VII 2 2
MIRT622131 SP4 Sp4 transcription factor 2 2
MIRT622955 OTUD7B OTU deubiquitinase 7B 2 2
MIRT623351 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT623619 INTU inturned planar cell polarity protein 2 2
MIRT624409 CCDC171 coiled-coil domain containing 171 2 2
MIRT625171 CCS copper chaperone for superoxide dismutase 2 2
MIRT625685 RPP40 ribonuclease P/MRP subunit p40 2 2
MIRT625875 ALDH18A1 aldehyde dehydrogenase 18 family member A1 2 2
MIRT626002 FAM107A family with sequence similarity 107 member A 2 2
MIRT626872 HRH4 histamine receptor H4 2 4
MIRT628220 FKBP9 FK506 binding protein 9 2 2
MIRT628265 DIO2 iodothyronine deiodinase 2 2 2
MIRT628402 C8orf37 chromosome 8 open reading frame 37 2 2
MIRT630564 C3orf36 chromosome 3 open reading frame 36 2 4
MIRT631577 RASSF9 Ras association domain family member 9 2 2
MIRT635730 CCDC58 coiled-coil domain containing 58 2 2
MIRT636224 SLC8A1 solute carrier family 8 member A1 2 2
MIRT636613 CLIC5 chloride intracellular channel 5 2 2
MIRT638899 CDK9 cyclin dependent kinase 9 2 2
MIRT640167 ATXN7L1 ataxin 7 like 1 2 2
MIRT642070 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT643034 CHCHD7 coiled-coil-helix-coiled-coil-helix domain containing 7 2 2
MIRT644572 SPOP speckle type BTB/POZ protein 2 2
MIRT644954 IFNB1 interferon beta 1 2 2
MIRT645948 TTF2 transcription termination factor 2 2 2
MIRT646440 XRCC2 X-ray repair cross complementing 2 2 2
MIRT647896 EPN2 epsin 2 2 2
MIRT648276 ZNF582 zinc finger protein 582 2 2
MIRT649381 NEDD1 neural precursor cell expressed, developmentally down-regulated 1 2 2
MIRT650254 CD68 CD68 molecule 2 2
MIRT650333 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT651707 VMP1 vacuole membrane protein 1 2 2
MIRT651774 VASP vasodilator stimulated phosphoprotein 2 2
MIRT653144 SRPK2 SRSF protein kinase 2 2 2
MIRT654112 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT654161 RORB RAR related orphan receptor B 2 2
MIRT655716 MLF2 myeloid leukemia factor 2 2 2
MIRT657476 HDAC4 histone deacetylase 4 2 2
MIRT658095 FOXO1 forkhead box O1 2 2
MIRT658860 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT658988 DNAJA1 DnaJ heat shock protein family (Hsp40) member A1 2 2
MIRT660767 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT661622 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT661694 TFDP2 transcription factor Dp-2 2 2
MIRT662208 PLA2G4E phospholipase A2 group IVE 2 2
MIRT662443 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT664422 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT687505 NECAB1 N-terminal EF-hand calcium binding protein 1 2 2
MIRT689910 SOD2 superoxide dismutase 2 2 2
MIRT690781 PLA2G2C phospholipase A2 group IIC 2 2
MIRT698488 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT699685 SFMBT2 Scm like with four mbt domains 2 2 2
MIRT700926 PDS5A PDS5 cohesin associated factor A 2 2
MIRT702258 LMNB1 lamin B1 2 2
MIRT703166 GPR137C G protein-coupled receptor 137C 2 2
MIRT703242 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT704737 CENPQ centromere protein Q 2 2
MIRT707310 GLRX2 glutaredoxin 2 2 2
MIRT710021 KCNQ5 potassium voltage-gated channel subfamily Q member 5 2 2
MIRT712212 SCOC short coiled-coil protein 2 2
MIRT714742 SETBP1 SET binding protein 1 2 2
MIRT718268 ZNF749 zinc finger protein 749 2 2
MIRT720553 DYRK4 dual specificity tyrosine phosphorylation regulated kinase 4 2 2
MIRT722248 RBM41 RNA binding motif protein 41 2 2
MIRT723767 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT723977 KIAA0146 scaffolding protein involved in DNA repair 1 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4282 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)

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