pre-miRNA Information
pre-miRNA hsa-mir-3179-1   
Genomic Coordinates chr16: 14901508 - 14901591
Description Homo sapiens miR-3179-1 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases
pre-miRNA hsa-mir-3179-2   
Genomic Coordinates chr16: 16300159 - 16300242
Description Homo sapiens miR-3179-2 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases
pre-miRNA hsa-mir-3179-3   
Genomic Coordinates chr16: 18411894 - 18411977
Description Homo sapiens miR-3179-3 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases
pre-miRNA hsa-mir-3179-4   
Genomic Coordinates chr16: 18494493 - 18494576
Description Homo sapiens miR-3179-4 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-3179
Sequence 52| AGAAGGGGUGAAAUUUAAACGU |73
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1351100204 1 dbSNP
rs1398613616 4 dbSNP
rs1340262765 20 dbSNP
rs1229893475 21 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol IP6K1   
Synonyms IHPK1, PiUS
Description inositol hexakisphosphate kinase 1
Transcript NM_001006115   
Other Transcripts NM_153273   
Expression
Putative miRNA Targets on IP6K1
3'UTR of IP6K1
(miRNA target sites are highlighted)
>IP6K1|NM_001006115|3'UTR
   1 GCCCTGTTCTGGGCCCCCAGAACCCCTTCCTCTCCACTGCAGGCAGGGACCATTGTTCTGAACTTGCCGTGAGGACACAC
  81 AGACTTGCTTTTAAAGGGTTATATTTCTCTTTGGTGTAAACTAAAAGAAATGTTTTTAGCTGTAGCCTGGAATCCATATA
 161 TATAAAGTGAAGGAGGGCAGACCACACGCCCTCTCAGCCAGGCTCCTCAGCTTTGTGGCTCTGACTGGTGTGTCCAGGCT
 241 GCCTTAGGAAGGAAGAGGTGCCCCTGGTGGGCTTGGCAGCAGGGACAGGGTGCCCTTGGACATTGGTTTCTCTTGTCTAG
 321 ATCTTTGAGATCTGTGGCTGCAGGGCCCTGCTGATTGTAAGGTAAAGCCCTGGGCTGGTGCAGGGCCCCTCCACGCCCAC
 401 TCTTCCCTTGTTCCCCAGAAGTAGAGGGCTCTGGGTGCCCATTTCTTGGGGGCTTTCCAGTCTTATGCTGTGGGTGTCAG
 481 CTAGCTCTTTAATAGGTGCCCTCAGGGCACCACAGGGCTGACTGCACAAAGCTGGACCCATCCTTCGGTCTGACCTTAGC
 561 ATGGGGCTAGATTAATGAAGCTGGGCTGAGGCCAACTTATGGCAGAGGGCGGCGCCTGGGTTCCCCAGGCACCTGTTGGC
 641 ACGTGACAGGTTGGCACCTGTCCTATTCCTGAAACAGCCTCTCTCACCAAGTTCCCTTGCCTAAGAAGGCCACTCCCTCC
 721 CACCCCACTGAAGTGGGGGATAGTCGGTGTCCTAGCAGGCCTCAGGGCCTCTGGTGGCTCTGGCCCAGACAGTATTTGCA
 801 GTTCTTGTGCTATGGGTGGGAGTCTTCTTCCTCAAGTTTCGGCAGCTGTGCTGCTGCTGGATGGGCTGCTCCTCCCAGGG
 881 CTCAAGGGCTGTGGTCCGCTCAGGGTCTCATTTCCCCAGGCCAAGTTCAAGGCAGCAGCCCTTTGTGAGGCGCTCTTGGC
 961 CCTGGGCCTGGAGGGAGAACTTTAAGCTTTTTTGCTCACAGGGACGTGGTATGGGCCCTGGGTGCAGGTGCCCACATTCT
1041 GCTAATGAGAGCTTTGTCTGATCAGTCCTGGGTCCATCAGTTTGTCCATGTGTCCGGCTGCCAGCCCGTCCCTTGGGATC
1121 CTTCCCCTGGGGTGTAGCCTTGTTCATTAGTATATACTCATTCCTTCATGCTTTCCTCAGCAGAACACTTCCACTTCTGA
1201 GGTGAGCTTTTGCCCCATGCCCTTCCTCCACAGGTGTTGCCTTTTTATAAAGACCTGATAGCAGAATAAATTGGTGTTTC
1281 CCTGTTGACCCAGCACCATTTCTGTGGGCCTAGAATATGGCCCTCAACCCTTAGAGTGGGGCAGTGAGGGCTTGAGGAGT
1361 GACCCTTCCTTTCTCATGGTTTTAGTCATTTTGGCTGCCAGCCCTTAATGGCACAGATCTGCTGCTTCTAACAGATGGCC
1441 AGGAGGTGACACCGATTTCAGCCATTGCCAAGGTTAGCACCCTCTCCTTTGAGCCTAGGGCCACACTGTTCATTGTCACT
1521 TTAGGCAAGTGCCTGTTTGGCTTTAAAGGTAAGCCTGCCAGCTGTGAGAAGCCTTGGTAACTGATGGACTCATTTCCTGG
1601 TCCTTAAAGATGCAGCCTCTTAAGGGCTCCTTGATGGATGCCATCTCTCCTAGCCCCCAGCCCTGGTGCCACTGGTGGGC
1681 AGGTTCCCATTCTTTGGGGCTGGGAGGGACAGCTTGCCTGTTTCTGGTCACAAATTACAGTCTTCTCTCCTGTACCATTC
1761 TGTGGCTTCAGCCATGGGGGCAGTAGCCCTTCATTAGTGTAGATAGTCATTCCCTGGTAGGGTGGAGGGTAAGACATAGG
1841 GTCTGGAACTGTTTGGGACCTTTTGGGGATGTCCTGTGCCTCCCAGATTCCTCGATTCTGGGAGGAGAGGCTGCCGCATT
1921 CTGCTGCTCCTCACAGCGAGCAAAGCTGCACCCACTTACATTCAGTATTTTCCTGGCACTACAAAGAGTGGGAAGGCCTG
2001 GGATTTGCTGCTGCTCCCTTAGAGCAGGGCCCCTCTTTTCAGCACTTTGGACACCTGGAGACCCAGCCCTGTTATTTAAT
2081 GGTAGTGGGCAAGTGTGTGTGCATACTGTCTGCCACTGCTTTCTCCCTGCCCCATGCCAGAGAGCCCTGTCCCTGCCAGG
2161 CCCAGCCTTCTTAGCCCCAACTTGGGAACAAAGTGCAACATGGGATCATGGGTTGGGGTGCTCAGGTGAGCCCTCTCTAT
2241 AGTGCTTCCCTGGGCCAAGCTGACACCAGCCCCTGAGGGTGGGGTGGGACGGGTGGTGCTTAAAAGAGGAAGGGGACCAG
2321 TGTAGCAACTTGCCAGGGACCCCACCCCTCCCTCTCTGGGCCTGTGCAGTGAGCATGGGGATTCCCATCAAGGGGCCTGG
2401 CACCTGTGCTAGTTACGTAGCCGCTGCTCACGCGCTCACTCCTGACCACATGCACGTTCCCTAGATGCAGACTGCTTTGA
2481 ACTTTAAAGCTGTACAATTTGGTTATGTTTGTGCTGACTTAAAATATATTTTAATGAGGAAAAAATAATGGAGAACCCTG
2561 GGAAGGACCTGGTTCTTTTGCTTCTCGGGGAACTGTAAGCCCTCGCGTTCTGGGAATCGCTCTCTGCTGCTCTTTCCTGG
2641 AAGCTAAGCCTGTCTCCACCGCCCGAGGCCTGCGCCGGTGGCTCCCGCCGCAGTTGCGTTTGCTTTGGACCTTGCGTGCG
2721 GGGGAGGGGGTGCTCGGTCCGAGCCCGCTCCTTTCTGTACACCTAGCGCTGCCCGCCCCGCTTGTGTCTGAGGTCGTGTA
2801 TGTCAAAAATAAAGCCGCTAGAAACGG
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ugcaaauuuaaagUGGGGAAGa 5'
                       |||||||| 
Target 5' ctgggcccccagaACCCCTTCc 3'
9 - 30 145.00 -18.20
2
miRNA  3' ugCAAAUUUAAAGUGGGGAAGa 5'
            || || |  |||::||||| 
Target 5' taGTATATA-CTCATTCCTTCa 3'
1148 - 1168 131.00 -11.20
3
miRNA  3' ugcAAAUUUAAAGU-GGGGAAga 5'
             || ||: | || ||:|||  
Target 5' tccTTAAAGATGCAGCCTCTTaa 3'
1601 - 1623 123.00 -8.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30105367 1 COSMIC
COSN31574036 20 COSMIC
COSN30509536 143 COSMIC
COSN28457278 665 COSMIC
COSN31557221 897 COSMIC
COSN30543611 951 COSMIC
COSN30175206 1095 COSMIC
COSN26547934 1351 COSMIC
COSN31551326 1438 COSMIC
COSN22148915 1792 COSMIC
COSN15864889 1916 COSMIC
COSN26603608 1972 COSMIC
COSN30175309 2032 COSMIC
COSN31564736 2134 COSMIC
COSN31556597 2274 COSMIC
COSN31541628 2278 COSMIC
COSN26637383 2317 COSMIC
COSN29620114 2518 COSMIC
COSN1951772 2575 COSMIC
COSN216899 2617 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs781429747 1 dbSNP
rs541254555 2 dbSNP
rs1487598937 9 dbSNP
rs751826328 11 dbSNP
rs576938258 13 dbSNP
rs763200382 16 dbSNP
rs1313494484 19 dbSNP
rs750818205 24 dbSNP
rs1217164136 29 dbSNP
rs1322332411 31 dbSNP
rs765573349 46 dbSNP
rs777053980 48 dbSNP
rs1183782568 63 dbSNP
rs17598495 68 dbSNP
rs1206943143 69 dbSNP
rs921928701 72 dbSNP
rs1480240594 74 dbSNP
rs1191746641 75 dbSNP
rs558445760 76 dbSNP
rs1435051740 77 dbSNP
rs1174207198 88 dbSNP
rs543276814 94 dbSNP
rs562642017 96 dbSNP
rs1394645098 98 dbSNP
rs201904702 100 dbSNP
rs974409539 101 dbSNP
rs1170832890 109 dbSNP
rs552599767 112 dbSNP
rs754450288 116 dbSNP
rs1294674381 120 dbSNP
rs1369078069 121 dbSNP
rs1384506169 126 dbSNP
rs1302062142 129 dbSNP
rs1262775610 131 dbSNP
rs1199287347 134 dbSNP
rs1342381023 139 dbSNP
rs751051617 154 dbSNP
rs1272183098 158 dbSNP
rs1306745048 161 dbSNP
rs1222209766 162 dbSNP
rs1248443951 173 dbSNP
rs1010116705 176 dbSNP
rs891670137 183 dbSNP
rs1191752195 185 dbSNP
rs180715403 187 dbSNP
rs554192352 188 dbSNP
rs1417777715 196 dbSNP
rs1409807305 199 dbSNP
rs966899074 200 dbSNP
rs1000024504 203 dbSNP
rs144659106 205 dbSNP
rs1045153066 207 dbSNP
rs948096991 220 dbSNP
rs1365357005 225 dbSNP
rs1436787479 227 dbSNP
rs896502997 238 dbSNP
rs1360996963 239 dbSNP
rs1228617246 243 dbSNP
rs1291768281 248 dbSNP
rs1319813824 251 dbSNP
rs1213019132 252 dbSNP
rs1272607287 253 dbSNP
rs1465435588 255 dbSNP
rs895362826 263 dbSNP
rs1394687968 267 dbSNP
rs1056447286 269 dbSNP
rs940942762 270 dbSNP
rs908117190 272 dbSNP
rs1335691344 273 dbSNP
rs1446799204 286 dbSNP
rs1240514433 292 dbSNP
rs1034439923 295 dbSNP
rs565804685 301 dbSNP
rs1182761108 305 dbSNP
rs74551371 312 dbSNP
rs1166062492 315 dbSNP
rs898938933 316 dbSNP
rs930815568 317 dbSNP
rs922079734 335 dbSNP
rs1388724232 336 dbSNP
rs1458410615 340 dbSNP
rs113667339 343 dbSNP
rs1461453474 344 dbSNP
rs1369016141 346 dbSNP
rs1166584993 348 dbSNP
rs974477962 350 dbSNP
rs965732603 356 dbSNP
rs1448342304 357 dbSNP
rs539242643 358 dbSNP
rs1376771279 359 dbSNP
rs1242688863 361 dbSNP
rs1288989050 367 dbSNP
rs988491175 372 dbSNP
rs1331147321 374 dbSNP
rs956183294 376 dbSNP
rs1459134880 386 dbSNP
rs189513774 389 dbSNP
rs1211147260 391 dbSNP
rs1000459649 394 dbSNP
rs905715623 395 dbSNP
rs1051565975 399 dbSNP
rs933239982 400 dbSNP
rs1156263530 402 dbSNP
rs1406638711 407 dbSNP
rs766709139 408 dbSNP
rs1373392746 410 dbSNP
rs1267781964 411 dbSNP
rs761602100 419 dbSNP
rs1308412975 434 dbSNP
rs1022777012 441 dbSNP
rs867998712 445 dbSNP
rs1012348157 466 dbSNP
rs975165545 474 dbSNP
rs1220031981 480 dbSNP
rs936676874 484 dbSNP
rs1484821262 490 dbSNP
rs925258737 492 dbSNP
rs896535640 496 dbSNP
rs1056518939 498 dbSNP
rs1253028596 499 dbSNP
rs978208494 501 dbSNP
rs368388386 502 dbSNP
rs1180351306 507 dbSNP
rs1231788405 514 dbSNP
rs966784368 522 dbSNP
rs1173959824 524 dbSNP
rs1025568668 527 dbSNP
rs1433743992 528 dbSNP
rs1168936189 536 dbSNP
rs185586852 546 dbSNP
rs1328174358 547 dbSNP
rs768502153 548 dbSNP
rs79276505 551 dbSNP
rs959904376 560 dbSNP
rs1033912909 561 dbSNP
rs1240503005 564 dbSNP
rs1345943829 595 dbSNP
rs745923659 596 dbSNP
rs567955140 600 dbSNP
rs181178541 610 dbSNP
rs527669318 611 dbSNP
rs375009077 613 dbSNP
rs1272999267 614 dbSNP
rs1452710900 623 dbSNP
rs1391283950 628 dbSNP
rs1250618553 632 dbSNP
rs771188792 633 dbSNP
rs1295235669 635 dbSNP
rs1188846915 640 dbSNP
rs1391778755 642 dbSNP
rs922109964 643 dbSNP
rs1422501861 649 dbSNP
rs1167120792 659 dbSNP
rs1384452613 662 dbSNP
rs1159442080 665 dbSNP
rs1327951760 673 dbSNP
rs1441828016 673 dbSNP
rs1368935888 674 dbSNP
rs1362303504 675 dbSNP
rs974842551 675 dbSNP
rs1181123684 678 dbSNP
rs1298702200 679 dbSNP
rs1328554123 681 dbSNP
rs1452256766 682 dbSNP
rs1270019911 683 dbSNP
rs1251134400 687 dbSNP
rs778558180 692 dbSNP
rs1052044340 694 dbSNP
rs1270693725 696 dbSNP
rs944498686 698 dbSNP
rs749513226 702 dbSNP
rs900312645 710 dbSNP
rs545141253 717 dbSNP
rs1355360854 719 dbSNP
rs1426373757 720 dbSNP
rs1192152606 727 dbSNP
rs988909296 733 dbSNP
rs532350428 734 dbSNP
rs1277417432 738 dbSNP
rs936567071 739 dbSNP
rs1387334486 742 dbSNP
rs540696999 745 dbSNP
rs925584850 746 dbSNP
rs978716803 750 dbSNP
rs1403070862 761 dbSNP
rs1235671131 766 dbSNP
rs752807582 767 dbSNP
rs1334780090 769 dbSNP
rs969929756 777 dbSNP
rs1228400865 788 dbSNP
rs1262008454 789 dbSNP
rs778204336 790 dbSNP
rs756477223 794 dbSNP
rs1204234802 801 dbSNP
rs1014093993 804 dbSNP
rs564694987 806 dbSNP
rs1298528793 822 dbSNP
rs543212018 825 dbSNP
rs1417007719 831 dbSNP
rs1472882968 831 dbSNP
rs1159936067 835 dbSNP
rs945461990 840 dbSNP
rs768675173 841 dbSNP
rs575973479 846 dbSNP
rs1005317122 854 dbSNP
rs886453945 869 dbSNP
rs959590623 871 dbSNP
rs149355777 872 dbSNP
rs995102667 875 dbSNP
rs188801883 876 dbSNP
rs3749238 878 dbSNP
rs1311447851 881 dbSNP
rs1355337215 886 dbSNP
rs962894457 887 dbSNP
rs781687354 897 dbSNP
rs944860535 914 dbSNP
rs950536999 918 dbSNP
rs1030103141 928 dbSNP
rs1256287703 934 dbSNP
rs997660201 951 dbSNP
rs138841265 952 dbSNP
rs1038886147 959 dbSNP
rs111311170 960 dbSNP
rs1483327063 965 dbSNP
rs561493126 975 dbSNP
rs750660895 978 dbSNP
rs1252746900 984 dbSNP
rs1417463745 995 dbSNP
rs903739296 997 dbSNP
rs538316878 1005 dbSNP
rs1158491811 1006 dbSNP
rs1052890013 1009 dbSNP
rs368163160 1011 dbSNP
rs755469664 1016 dbSNP
rs558092566 1023 dbSNP
rs542863054 1026 dbSNP
rs539709275 1030 dbSNP
rs1300491373 1032 dbSNP
rs1370526132 1033 dbSNP
rs1390257406 1036 dbSNP
rs1301370542 1061 dbSNP
rs1372677068 1061 dbSNP
rs917893178 1063 dbSNP
rs538430500 1083 dbSNP
rs1342689830 1084 dbSNP
rs1204251151 1089 dbSNP
rs1249485947 1092 dbSNP
rs765851801 1095 dbSNP
rs992689624 1097 dbSNP
rs1264511683 1104 dbSNP
rs1176651824 1105 dbSNP
rs145058802 1107 dbSNP
rs959843678 1108 dbSNP
rs1192031911 1111 dbSNP
rs1394855401 1112 dbSNP
rs1278766158 1124 dbSNP
rs1015820029 1128 dbSNP
rs1353202869 1129 dbSNP
rs1004975931 1132 dbSNP
rs1293558020 1133 dbSNP
rs1372585928 1135 dbSNP
rs1438251093 1143 dbSNP
rs1324523989 1156 dbSNP
rs1302306531 1157 dbSNP
rs549676455 1158 dbSNP
rs1365485769 1160 dbSNP
rs1216037255 1167 dbSNP
rs926795922 1170 dbSNP
rs950820733 1186 dbSNP
rs1222278215 1187 dbSNP
rs1273857609 1190 dbSNP
rs1469931806 1191 dbSNP
rs571690276 1193 dbSNP
rs1252548401 1199 dbSNP
rs757960469 1202 dbSNP
rs779917601 1206 dbSNP
rs994789360 1208 dbSNP
rs1404652824 1210 dbSNP
rs1174320879 1216 dbSNP
rs1049256 1217 dbSNP
rs983419237 1226 dbSNP
rs1166370026 1230 dbSNP
rs950439689 1234 dbSNP
rs1039241122 1236 dbSNP
rs1009078413 1241 dbSNP
rs551861024 1246 dbSNP
rs1324637159 1252 dbSNP
rs1388864314 1259 dbSNP
rs890640611 1264 dbSNP
rs184487665 1272 dbSNP
rs1228815148 1274 dbSNP
rs1295117514 1289 dbSNP
rs562635272 1290 dbSNP
rs1231460532 1292 dbSNP
rs964779450 1297 dbSNP
rs934430986 1301 dbSNP
rs114745265 1302 dbSNP
rs1000673129 1306 dbSNP
rs1240710658 1308 dbSNP
rs1042763314 1320 dbSNP
rs1485777019 1322 dbSNP
rs773622495 1323 dbSNP
rs1241938585 1330 dbSNP
rs531383650 1331 dbSNP
rs144667181 1334 dbSNP
rs948355338 1334 dbSNP
rs1442590592 1344 dbSNP
rs1020908449 1357 dbSNP
rs1009886294 1361 dbSNP
rs1315868182 1362 dbSNP
rs376367401 1368 dbSNP
rs774969001 1372 dbSNP
rs1448411512 1373 dbSNP
rs1353445708 1376 dbSNP
rs758609705 1376 dbSNP
rs752842006 1379 dbSNP
rs938543991 1385 dbSNP
rs1351550344 1386 dbSNP
rs1322230947 1387 dbSNP
rs908372752 1388 dbSNP
rs1316557177 1397 dbSNP
rs1211991534 1398 dbSNP
rs1334773033 1401 dbSNP
rs753608226 1415 dbSNP
rs950863028 1416 dbSNP
rs1232948885 1425 dbSNP
rs1470911961 1427 dbSNP
rs2131106 1427 dbSNP
rs973397032 1428 dbSNP
rs138664819 1433 dbSNP
rs193198247 1438 dbSNP
rs1009114118 1446 dbSNP
rs768273617 1453 dbSNP
rs1337474859 1454 dbSNP
rs559848548 1455 dbSNP
rs150149795 1472 dbSNP
rs760510267 1473 dbSNP
rs1235353067 1474 dbSNP
rs1282886868 1475 dbSNP
rs1042809772 1480 dbSNP
rs983087112 1488 dbSNP
rs577851636 1489 dbSNP
rs1401210831 1496 dbSNP
rs1440071015 1497 dbSNP
rs775559975 1500 dbSNP
rs948428295 1508 dbSNP
rs1231840110 1517 dbSNP
rs1173421109 1522 dbSNP
rs934232387 1526 dbSNP
rs894161086 1531 dbSNP
rs1419451807 1532 dbSNP
rs373392696 1535 dbSNP
rs1168299406 1536 dbSNP
rs1398487358 1538 dbSNP
rs922968160 1539 dbSNP
rs1473980238 1540 dbSNP
rs976122982 1548 dbSNP
rs1441900558 1557 dbSNP
rs1181428733 1561 dbSNP
rs1369056441 1564 dbSNP
rs1233949238 1569 dbSNP
rs1460479531 1570 dbSNP
rs938650945 1572 dbSNP
rs1194625567 1577 dbSNP
rs538469063 1584 dbSNP
rs982665297 1588 dbSNP
rs1017344443 1600 dbSNP
rs1250694205 1602 dbSNP
rs931118980 1609 dbSNP
rs919744126 1612 dbSNP
rs973470770 1613 dbSNP
rs1374626544 1617 dbSNP
rs1474373631 1618 dbSNP
rs1020792501 1619 dbSNP
rs1228619219 1621 dbSNP
rs1361404420 1624 dbSNP
rs1461970097 1624 dbSNP
rs1328018867 1626 dbSNP
rs1009526881 1627 dbSNP
rs896359532 1642 dbSNP
rs1225854978 1654 dbSNP
rs543993079 1654 dbSNP
rs1002590491 1655 dbSNP
rs905183197 1658 dbSNP
rs36006366 1664 dbSNP
rs1299914056 1665 dbSNP
rs1038445299 1672 dbSNP
rs1440150823 1686 dbSNP
rs868730093 1688 dbSNP
rs1324796351 1689 dbSNP
rs1017563189 1691 dbSNP
rs1263569457 1694 dbSNP
rs887313709 1696 dbSNP
rs1192206321 1702 dbSNP
rs1407420206 1709 dbSNP
rs1258068154 1715 dbSNP
rs1047637569 1717 dbSNP
rs1167141375 1718 dbSNP
rs1415817368 1718 dbSNP
rs1161245710 1726 dbSNP
rs1443679382 1729 dbSNP
rs1159420331 1734 dbSNP
rs1380547216 1741 dbSNP
rs934270871 1745 dbSNP
rs987432600 1749 dbSNP
rs1178367859 1750 dbSNP
rs955020718 1762 dbSNP
rs1468172518 1767 dbSNP
rs1356619927 1768 dbSNP
rs1417207514 1769 dbSNP
rs11716895 1776 dbSNP
rs556037932 1777 dbSNP
rs943040067 1780 dbSNP
rs1262055688 1784 dbSNP
rs1490770703 1785 dbSNP
rs904709152 1787 dbSNP
rs1021773421 1790 dbSNP
rs531010640 1792 dbSNP
rs1258002090 1793 dbSNP
rs1486592475 1798 dbSNP
rs1221497964 1799 dbSNP
rs1255473088 1804 dbSNP
rs979210216 1806 dbSNP
rs1354632345 1820 dbSNP
rs534183746 1830 dbSNP
rs1365710848 1831 dbSNP
rs1222085509 1832 dbSNP
rs1158388618 1833 dbSNP
rs1056852705 1840 dbSNP
rs1376497614 1841 dbSNP
rs1437111704 1843 dbSNP
rs1372767555 1846 dbSNP
rs938333897 1851 dbSNP
rs35203284 1861 dbSNP
rs11709076 1864 dbSNP
rs1391406624 1875 dbSNP
rs913742187 1882 dbSNP
rs1407339932 1884 dbSNP
rs7634902 1893 dbSNP
rs1349854932 1908 dbSNP
rs1208631309 1913 dbSNP
rs1255266485 1916 dbSNP
rs1480934111 1917 dbSNP
rs931215722 1922 dbSNP
rs878963261 1923 dbSNP
rs919767232 1926 dbSNP
rs1039474415 1927 dbSNP
rs1417536120 1928 dbSNP
rs140864960 1929 dbSNP
rs1396067638 1937 dbSNP
rs1420702950 1938 dbSNP
rs1455806304 1948 dbSNP
rs569041128 1952 dbSNP
rs1035371659 1953 dbSNP
rs910630459 1954 dbSNP
rs1345361161 1955 dbSNP
rs550636454 1959 dbSNP
rs1393752534 1960 dbSNP
rs1445561272 1960 dbSNP
rs1303774222 1962 dbSNP
rs760891081 1963 dbSNP
rs1231725244 1966 dbSNP
rs1300373981 1971 dbSNP
rs1307977892 1972 dbSNP
rs1406661634 1983 dbSNP
rs745756094 1984 dbSNP
rs1253139460 1985 dbSNP
rs1481349663 1988 dbSNP
rs1266723715 1989 dbSNP
rs1016885386 2002 dbSNP
rs1005592521 2022 dbSNP
rs978090582 2033 dbSNP
rs1049257 2035 dbSNP
rs887161104 2039 dbSNP
rs1189803308 2052 dbSNP
rs1047241785 2054 dbSNP
rs1429606107 2060 dbSNP
rs1173232243 2071 dbSNP
rs866179942 2077 dbSNP
rs1488501781 2080 dbSNP
rs533475874 2093 dbSNP
rs1262698272 2103 dbSNP
rs1213997705 2105 dbSNP
rs1316377011 2107 dbSNP
rs1370837292 2112 dbSNP
rs968964112 2119 dbSNP
rs769112760 2126 dbSNP
rs1279479277 2134 dbSNP
rs1326009265 2136 dbSNP
rs1013081275 2144 dbSNP
rs747457672 2145 dbSNP
rs995536032 2150 dbSNP
rs531418495 2153 dbSNP
rs958472358 2162 dbSNP
rs901324098 2164 dbSNP
rs1040389364 2168 dbSNP
rs942924099 2169 dbSNP
rs1293273886 2177 dbSNP
rs1400981599 2185 dbSNP
rs1317236284 2190 dbSNP
rs1218038830 2192 dbSNP
rs1364610091 2201 dbSNP
rs910259363 2201 dbSNP
rs780544246 2204 dbSNP
rs1219702684 2207 dbSNP
rs185759659 2216 dbSNP
rs1035420048 2218 dbSNP
rs1486434315 2220 dbSNP
rs1188659899 2228 dbSNP
rs1002600850 2229 dbSNP
rs913617207 2230 dbSNP
rs987889612 2237 dbSNP
rs1419456580 2239 dbSNP
rs1459540611 2239 dbSNP
rs1163721752 2240 dbSNP
rs886785334 2241 dbSNP
rs1803430 2245 dbSNP
rs1339710286 2253 dbSNP
rs1415366290 2256 dbSNP
rs1293957847 2259 dbSNP
rs1337117218 2266 dbSNP
rs1470672385 2271 dbSNP
rs1226814196 2275 dbSNP
rs549264083 2277 dbSNP
rs995831073 2279 dbSNP
rs1218321300 2284 dbSNP
rs1284379087 2289 dbSNP
rs527636452 2291 dbSNP
rs1488239742 2294 dbSNP
rs1175688362 2295 dbSNP
rs1259004881 2296 dbSNP
rs898417484 2299 dbSNP
rs1471486224 2306 dbSNP
rs773698353 2309 dbSNP
rs1039547712 2318 dbSNP
rs1408201131 2323 dbSNP
rs1402116521 2333 dbSNP
rs1016900144 2334 dbSNP
rs192220325 2336 dbSNP
rs1435243911 2341 dbSNP
rs1314738301 2344 dbSNP
rs544711341 2347 dbSNP
rs1445836266 2348 dbSNP
rs1374274170 2353 dbSNP
rs1225739710 2354 dbSNP
rs1307522055 2368 dbSNP
rs910662904 2370 dbSNP
rs1353526706 2372 dbSNP
rs116774792 2388 dbSNP
rs1026174536 2389 dbSNP
rs998269465 2392 dbSNP
rs1208768061 2398 dbSNP
rs559981244 2401 dbSNP
rs562593870 2404 dbSNP
rs1205580742 2412 dbSNP
rs544286665 2416 dbSNP
rs1039870023 2418 dbSNP
rs1175295549 2427 dbSNP
rs1399912104 2431 dbSNP
rs1007150882 2432 dbSNP
rs977445144 2434 dbSNP
rs968992172 2437 dbSNP
rs914814249 2442 dbSNP
rs1449279079 2449 dbSNP
rs991680139 2450 dbSNP
rs1309611567 2456 dbSNP
rs574291004 2456 dbSNP
rs767341729 2459 dbSNP
rs1376456697 2461 dbSNP
rs151016106 2470 dbSNP
rs946387699 2473 dbSNP
rs1293822243 2486 dbSNP
rs1343456128 2486 dbSNP
rs958876887 2491 dbSNP
rs1439115358 2495 dbSNP
rs753578529 2496 dbSNP
rs1196212352 2498 dbSNP
rs540816699 2506 dbSNP
rs1468657689 2518 dbSNP
rs1195218885 2525 dbSNP
rs1360757624 2530 dbSNP
rs951122609 2536 dbSNP
rs1336997156 2542 dbSNP
rs573493875 2544 dbSNP
rs1329421980 2546 dbSNP
rs1403346887 2546 dbSNP
rs1399783738 2556 dbSNP
rs1441970724 2557 dbSNP
rs927787268 2579 dbSNP
rs995177866 2587 dbSNP
rs1335966107 2592 dbSNP
rs898448812 2601 dbSNP
rs980536398 2605 dbSNP
rs1342099458 2608 dbSNP
rs1374743442 2611 dbSNP
rs1039580704 2618 dbSNP
rs1427703740 2626 dbSNP
rs1335036535 2631 dbSNP
rs1386083408 2632 dbSNP
rs909782771 2633 dbSNP
rs983985874 2635 dbSNP
rs1460015100 2649 dbSNP
rs1264998405 2651 dbSNP
rs1006738941 2653 dbSNP
rs890972250 2657 dbSNP
rs370751433 2659 dbSNP
rs1199375887 2660 dbSNP
rs558411419 2667 dbSNP
rs1481884790 2676 dbSNP
rs1250134465 2685 dbSNP
rs1227078407 2687 dbSNP
rs933405004 2689 dbSNP
rs903258487 2690 dbSNP
rs1322759734 2694 dbSNP
rs1319411977 2696 dbSNP
rs1018462726 2697 dbSNP
rs539472886 2697 dbSNP
rs1042139276 2698 dbSNP
rs1276991035 2704 dbSNP
rs1355619987 2705 dbSNP
rs1247767531 2708 dbSNP
rs1246360559 2715 dbSNP
rs904673651 2717 dbSNP
rs947351897 2718 dbSNP
rs1205463350 2721 dbSNP
rs1286135449 2732 dbSNP
rs1487256308 2733 dbSNP
rs914552725 2739 dbSNP
rs1192932067 2744 dbSNP
rs991750761 2745 dbSNP
rs540711844 2746 dbSNP
rs1189721319 2747 dbSNP
rs1010478584 2762 dbSNP
rs1457618791 2764 dbSNP
rs1159475897 2765 dbSNP
rs1398459108 2766 dbSNP
rs1296443923 2767 dbSNP
rs568878689 2779 dbSNP
rs892163348 2780 dbSNP
rs573580502 2784 dbSNP
rs1376611595 2786 dbSNP
rs115258065 2790 dbSNP
rs951241843 2796 dbSNP
rs111384702 2804 dbSNP
rs939103401 2806 dbSNP
rs1339478594 2819 dbSNP
rs1366007599 2821 dbSNP
rs1239383820 2829 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ugcaaauuuaaagUGGGGAAGa 5'
                       |||||||| 
Target 5' ------------aACCCCUUCc 3'
1 - 10
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000321599.4 | 3UTR | AACCCCUUCCUCUCCACUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
Click to see details
Click to see details
133 hsa-miR-3179 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT102087 GIGYF1 GRB10 interacting GYF protein 1 2 4
MIRT110061 OGT O-linked N-acetylglucosamine (GlcNAc) transferase 2 6
MIRT112198 BTG2 BTG anti-proliferation factor 2 2 2
MIRT117668 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT146657 MINK1 misshapen like kinase 1 2 2
MIRT175505 ZBTB33 zinc finger and BTB domain containing 33 2 4
MIRT180535 TXNIP thioredoxin interacting protein 2 2
MIRT190624 BCL2L2-PABPN1 BCL2L2-PABPN1 readthrough 2 2
MIRT190650 PABPN1 poly(A) binding protein nuclear 1 2 2
MIRT366902 NONO non-POU domain containing octamer binding 2 2
MIRT443554 ZFP3 ZFP3 zinc finger protein 2 2
MIRT445953 MLLT11 MLLT11, transcription factor 7 cofactor 2 2
MIRT446042 HMCN1 hemicentin 1 2 2
MIRT447968 MSH6 mutS homolog 6 2 2
MIRT448634 ONECUT1 one cut homeobox 1 2 2
MIRT449316 MRO maestro 2 2
MIRT451380 C19orf43 telomerase RNA component interacting RNase 2 2
MIRT451547 CIAPIN1 cytokine induced apoptosis inhibitor 1 2 2
MIRT451807 CDCA3 cell division cycle associated 3 2 4
MIRT451916 ILK integrin linked kinase 2 2
MIRT451938 TMPRSS5 transmembrane protease, serine 5 2 2
MIRT452189 KIAA1456 KIAA1456 2 2
MIRT452498 HMGXB3 HMG-box containing 3 2 2
MIRT452548 ZNF467 zinc finger protein 467 2 2
MIRT453844 SDK1 sidekick cell adhesion molecule 1 2 2
MIRT454515 ZFYVE27 zinc finger FYVE-type containing 27 2 2
MIRT455363 KDM5C lysine demethylase 5C 2 2
MIRT455455 EPB41L4B erythrocyte membrane protein band 4.1 like 4B 2 2
MIRT455628 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 10
MIRT455639 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 10
MIRT455690 GLO1 glyoxalase I 2 2
MIRT456300 ASH1L ASH1 like histone lysine methyltransferase 2 2
MIRT456784 MTHFSD methenyltetrahydrofolate synthetase domain containing 2 2
MIRT456819 PIGP phosphatidylinositol glycan anchor biosynthesis class P 2 2
MIRT457566 ZNF34 zinc finger protein 34 2 2
MIRT457604 IDS iduronate 2-sulfatase 2 2
MIRT458236 NXPH3 neurexophilin 3 2 2
MIRT458313 TNFAIP8L3 TNF alpha induced protein 8 like 3 2 2
MIRT458350 NOC2L NOC2 like nucleolar associated transcriptional repressor 2 2
MIRT458670 GPR35 G protein-coupled receptor 35 2 2
MIRT459675 VPS37C VPS37C, ESCRT-I subunit 2 2
MIRT461126 RAB36 RAB36, member RAS oncogene family 2 2
MIRT461918 NECAB3 N-terminal EF-hand calcium binding protein 3 2 2
MIRT462301 PPM1H protein phosphatase, Mg2+/Mn2+ dependent 1H 2 2
MIRT463520 ZBTB7B zinc finger and BTB domain containing 7B 2 2
MIRT464378 URM1 ubiquitin related modifier 1 2 2
MIRT464614 UBE4B ubiquitination factor E4B 2 2
MIRT464711 UBE2V1 ubiquitin conjugating enzyme E2 V1 2 2
MIRT465520 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT465974 TMEM189-UBE2V1 TMEM189-UBE2V1 readthrough 2 2
MIRT466058 TMEM189 transmembrane protein 189 2 2
MIRT466548 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 2
MIRT466647 TAGLN2 transgelin 2 2 2
MIRT467357 SP2 Sp2 transcription factor 2 2
MIRT468744 SDC2 syndecan 2 2 2
MIRT470244 PRRC2A proline rich coiled-coil 2A 2 2
MIRT471426 PDIA6 protein disulfide isomerase family A member 6 2 2
MIRT471732 OTUB1 OTU deubiquitinase, ubiquitin aldehyde binding 1 2 2
MIRT472190 NHP2L1 small nuclear ribonucleoprotein 13 2 2
MIRT472450 NAV2 neuron navigator 2 2 6
MIRT474563 KLHDC3 kelch domain containing 3 2 2
MIRT474936 KCTD15 potassium channel tetramerization domain containing 15 2 2
MIRT475165 IP6K1 inositol hexakisphosphate kinase 1 2 2
MIRT475399 ICMT isoprenylcysteine carboxyl methyltransferase 2 4
MIRT475426 ICK intestinal cell kinase 2 2
MIRT477090 FAM168A family with sequence similarity 168 member A 2 2
MIRT478458 DAB2 DAB2, clathrin adaptor protein 2 2
MIRT478953 COX15 COX15, cytochrome c oxidase assembly homolog 2 2
MIRT480096 CALR calreticulin 2 2
MIRT481924 ANKRD33B ankyrin repeat domain 33B 2 2
MIRT483217 APOA1 apolipoprotein A1 2 6
MIRT483882 TGIF1 TGFB induced factor homeobox 1 2 2
MIRT483923 SPSB1 splA/ryanodine receptor domain and SOCS box containing 1 2 2
MIRT483942 LENG8 leukocyte receptor cluster member 8 2 4
MIRT484209 SUMO1 small ubiquitin-like modifier 1 2 2
MIRT484512 SYT7 synaptotagmin 7 2 2
MIRT484709 RNF11 ring finger protein 11 2 2
MIRT485356 MYO1C myosin IC 2 4
MIRT485615 FOSL1 FOS like 1, AP-1 transcription factor subunit 2 4
MIRT486584 ZNF619 zinc finger protein 619 2 2
MIRT487013 C2orf82 chromosome 2 open reading frame 82 2 2
MIRT487621 C20orf96 chromosome 20 open reading frame 96 2 2
MIRT487801 GPR20 G protein-coupled receptor 20 2 4
MIRT488134 GPR107 G protein-coupled receptor 107 2 2
MIRT488773 FXYD1 FXYD domain containing ion transport regulator 1 2 2
MIRT488854 UBTF upstream binding transcription factor, RNA polymerase I 2 2
MIRT489783 GRINA glutamate ionotropic receptor NMDA type subunit associated protein 1 2 2
MIRT490102 FN3K fructosamine 3 kinase 2 2
MIRT490389 LHFPL3 LHFPL tetraspan subfamily member 3 2 2
MIRT490434 MYL9 myosin light chain 9 2 2
MIRT490451 GLUD1 glutamate dehydrogenase 1 2 2
MIRT490880 OSBP oxysterol binding protein 2 2
MIRT491037 ALPK3 alpha kinase 3 2 2
MIRT491250 HCN2 hyperpolarization activated cyclic nucleotide gated potassium and sodium channel 2 2 2
MIRT491748 SEMA3F semaphorin 3F 2 2
MIRT492235 SLC48A1 solute carrier family 48 member 1 2 2
MIRT492490 RAPGEF1 Rap guanine nucleotide exchange factor 1 2 2
MIRT492505 RANBP10 RAN binding protein 10 2 4
MIRT492773 PDGFB platelet derived growth factor subunit B 2 2
MIRT492922 NFAT5 nuclear factor of activated T-cells 5 2 2
MIRT493459 ITFG3 family with sequence similarity 234 member A 2 2
MIRT493654 HDLBP high density lipoprotein binding protein 2 2
MIRT494011 DUSP9 dual specificity phosphatase 9 2 2
MIRT499412 PLCG2 phospholipase C gamma 2 2 4
MIRT499552 C15orf43 telomere repeat binding bouquet formation protein 2 2 2
MIRT501836 NCOA2 nuclear receptor coactivator 2 2 2
MIRT501950 MAT2A methionine adenosyltransferase 2A 2 10
MIRT504066 KCTD12 potassium channel tetramerization domain containing 12 2 4
MIRT504509 PPP1R9B protein phosphatase 1 regulatory subunit 9B 2 2
MIRT508466 HOXB6 homeobox B6 2 4
MIRT512373 CPM carboxypeptidase M 2 2
MIRT513578 EVX1 even-skipped homeobox 1 2 2
MIRT517763 ZNF366 zinc finger protein 366 2 4
MIRT519773 ZNF354B zinc finger protein 354B 2 8
MIRT523568 GGCX gamma-glutamyl carboxylase 2 4
MIRT532802 CLDN11 claudin 11 2 2
MIRT544299 TSPYL1 TSPY like 1 2 2
MIRT544862 MYH2 myosin heavy chain 2 2 4
MIRT556731 KLHL15 kelch like family member 15 2 4
MIRT564347 AKR1B10 aldo-keto reductase family 1 member B10 2 2
MIRT568924 SMCR8 Smith-Magenis syndrome chromosome region, candidate 8 2 2
MIRT569012 CXorf36 chromosome X open reading frame 36 2 2
MIRT569256 FAM129B family with sequence similarity 129 member B 2 2
MIRT569591 PRELP proline and arginine rich end leucine rich repeat protein 2 2
MIRT569779 SAMD14 sterile alpha motif domain containing 14 2 2
MIRT570034 FAM228A family with sequence similarity 228 member A 2 2
MIRT573803 FRMPD4 FERM and PDZ domain containing 4 2 2
MIRT574190 ZNF264 zinc finger protein 264 2 2
MIRT576153 Hmox1 heme oxygenase 1 2 2
MIRT611311 CA8 carbonic anhydrase 8 2 4
MIRT673429 APAF1 apoptotic peptidase activating factor 1 2 2
MIRT674976 SH3BP2 SH3 domain binding protein 2 2 2
MIRT692712 MEAF6 MYST/Esa1 associated factor 6 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3179 Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (AsPC-1)
hsa-miR-3179 Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-3179 Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-3179 Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-3179 Osimertinib 71496458 NSC779217 approved sensitive cell line (PC9)
hsa-miR-3179 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3179 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)
hsa-miR-3179 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

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