pre-miRNA Information
pre-miRNA hsa-mir-367   
Genomic Coordinates chr4: 112647874 - 112647941
Synonyms MIRN367, hsa-mir-367, MIR367
Description Homo sapiens miR-367 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-367-3p
Sequence 44| AAUUGCACUUUAGCAAUGGUGA |65
Evidence Experimental
Experiments Cloned
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN24411246 17 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs535597757 1 dbSNP
rs1013348949 11 dbSNP
rs896333735 12 dbSNP
rs751269136 14 dbSNP
rs1163501507 16 dbSNP
rs757092597 21 dbSNP
Putative Targets

Gene Information
Gene Symbol GM2A   
Synonyms GM2-AP, SAP-3
Description GM2 ganglioside activator
Transcript NM_000405   
Other Transcripts NM_001167607   
Expression
Putative miRNA Targets on GM2A
3'UTR of GM2A
(miRNA target sites are highlighted)
>GM2A|NM_000405|3'UTR
   1 CATGGCATCTGCCACAGCAGAATGGAGCGGTGTGAGGAAGGTCCCTTTTCCTCTGTTTTGTGTTTGCCAAGGCCAAACTC
  81 CCACTCTCTGCCCCCCTTTAATCCCCTTTCTACAGTGAGTCCACTACCCTCACTGAAAATCATTTTGTACCACTTACATT
 161 TTAGGCTGGGGCAAGCAGCCCTGACCTAAGGGAGAATGAGTTGGACAGTTCTTGATAGCCCAGGGCATCTGCTGGGCTGA
 241 CCACGTTACTCATCCCCGTTAACATTCTCTCTAAAGAGCCTCGTTCATTTCCAAAGCAGTTAAGGAATGGGAACCAGAGT
 321 GTTTTAGGACCTGAAGAATCTTTATGACTCTCTCTCTTTCACTCTTTTTTTTTTTTGTCACTAAGTTAAAAGCGAAGTGA
 401 GAGTATTAACGTTTTTGTTCTCCTCCGGCCCCCTGTTACAATGAAGGGGCAAAAGTATTTGCTCTTAGTCTATTCCTCCC
 481 TTAACTTCTGTGACTAATTTTTATTTCCTTTCTAGATTTGCCCAATTAATACTAGGGTGCAGTGTATCCTGGAGAGGTAG
 561 GGTGTGTGGGGGAGGAATCCCTTGGGGGAGATATTAGGAGTGCTCTGTTGTTTACAAACTCAGGTACCCGCAGGGCCTAG
 641 CAAGAGACTTAAATGACTGATAAGAACCGTGAGAAACATGTTGCTTCCAGGCTTGATTTCGATTTTTCGCTTTTTTTTTT
 721 TTTGAGACAGAATCTCACTTTGTCACCAGGCTGGAGTGCAGTGGTGCAATCTCACCTCACTGCAACCTCCGCCTCCTGGG
 801 TTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTTGGACTACAGGCCCTGCCACCACGCCCGGCTAATTTGTGTATT
 881 TTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGATGGTCTCGATCTCTTGACCTCGTGATCTGTCCACCTTGGCCTTG
 961 CAAAGCGCTGGATTACAGGCATGAGCCACTACACCCAGCCGATTTTTCCTTTTTGATTAAAGATGCTATTACAATGTAAA
1041 TATTTCTTACACAGAAAGTCACAGCACATGTGCCCATTGATACAAGGCTGCTGAGGCCTGGTCTCCAGTTGGAAATATAA
1121 TTAAGGGTGGCAAGGACTGGAGTCAGTTGGAGAGTGCATAGCCAGTCTGTGAAGACAACTGCCAGATACTGGCAATACTC
1201 CAGCCTGGTGACAGAGTGAGACTCTGTCTCAAAAAAAAAGTTTCAATGTTTACTCCTAGAGAAGCCAAAAATCCAGATTT
1281 GTATATGAAATCTTACCATTTTAAAAGATTGGCAGCTAATTATTTTTTTAAAAAGCTGTGCAGTGTGATGTGTCCCAAAC
1361 GGACTGGCTCATGGGTGGCCACGTCACAACCTCTGATCTCAGACCGTGCATGCCTTGTCCTCTTAAGACAACTCCTGTGG
1441 CACCGTTTCTCCCTCCACAGGGCCAAAGCCATAGTGTCCGGTCCCAAGGACAAGGCTCTTCCAGTGCTAGGAGAGGTATG
1521 AGCAGCCTCTCACCTGTGAGCTGTGGGGATCACAAGGCTGCCTGCCTCAGTCTTGGAGTCCTGTTGGGTGAATGAGGCAG
1601 ATGGGAAAGAGCCTCACCAGCAGCTGCTTTTGGAGCAGGGGTCCAAGGAAGAGAGGGTGGCCTCGACATCAAACTGCCTG
1681 GATTTTTCTACCACCCTGTTACATCATAACAACTTCTGAAACACACACCAGCCCTGAGTTCTGGGCTCATTTGAAGCCTG
1761 GAATAGCAATAAATCTTTTTAACTTGCGGACAGTTTCCCCTTGCCTTGGCTGCATATTTCACTGATCACATCTCAGGATT
1841 TCAAAAGCATTTTTGGGGTGGGGCTCTTTTGGTTGGAAGGGTTTGTTGGAACGGTACAGGTGAGCCGAGGTGATTCCAGG
1921 GACGGACCCTTCTGCAGGAGCTTGAGCTTGCTTGTTGTCTCTGCTTCATCGCCATCCAGCTCCCTTGTTTGCTATTTTGC
2001 TTTCCATCACATCATGACTGCGGAGAGCAAAAATCACCTAGTGACCATTGAACAGGTCCCAGAGACAAAATCTTTTTATC
2081 TGAGGAATTTAAAAGGGAGCAAAGACCACCTGGTGACTATCAGGCCATGCAGAGGCAAAACGCCTTATTTGGGGAAAATT
2161 AAAAGTAATTAGACTTTCCTATTATCTAAAGCAGGCATCTGGTTCCAGATTTCTTTTCCCCGAAAAAAACCTTAGAAGTA
2241 ACTAAAATTTCTGTACATCTCCGGAATGCCATGCTGAAACTCACTGCAACCCCACGGTCCCGCTTTAAGGTCCATAAATA
2321 TCCCTAAGGAAAAATCCACCGTGGTACATTCAGTCCTCTCACCGAGGTGCCCCATGGCAGTCTTCTGCAGCATTCTTCTA
2401 ATACCTTTCCTTTTTCAAACCTATACTGTTGTTGGTGAATTCTTTTTACCAACCCACGAGTTGACCACTTCCCAATGCCG
2481 GGGATCTGACACCTCACCTGGCAATGACCTCCACAGCCGTTTCCCTCTGTTGGATCTTCCAGCCTTATTCTCAACAGTTC
2561 ATTTTTAGTTCACATTCTTGACCGAATCTCAGTAGCTCAGTTAATCTTTTTATGTCTGCTCTGCTCTTGGGTCATATGTT
2641 CCGTGAGGTTTCTTAGGGGTGGGGGATGAGGAGTTAAAGGTGGCATCTTCAATCGCAGGTCAAAGCAGACTTTAATAAAT
2721 GGTGCTGAGCCAACTGGAAAGCCCCTTGGAGAAAGTTGAAGTTAGACCTGTACTTCACACCATATGCAAGAATGAACTCC
2801 ATCTGGATCCAGGATCCAAATGTAAGAAAATGAAGCCATATAAATACAGAAGGAAACGTGGTGGAAATATCCAGTGGCAA
2881 CAAAATATTGACACATTTGACTACATGAAGATAATAAAAATGCTTAGTAAAAACACAATAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' agUGGUAACGAUUUCACGUUAa 5'
            ||||  |||::||||||:| 
Target 5' tcACCA-GGCTGGAGTGCAGTg 3'
743 - 763 155.00 -23.70
2
miRNA  3' agUGGUAACGAUUUCACGUUAa 5'
            |::| | |||::|||||:| 
Target 5' caATTAATACTAGGGTGCAGTg 3'
523 - 544 152.00 -14.10
3
miRNA  3' agUGGUAACGA----UUU---CACGUUAa 5'
            |::||| :|    |||   |||||:| 
Target 5' taATTATTTTTTTAAAAAGCTGTGCAGTg 3'
1317 - 1345 138.00 -7.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
167152 1 ClinVar
256029 29 ClinVar
907563 92 ClinVar
907564 134 ClinVar
352256 145 ClinVar
352257 189 ClinVar
352258 227 ClinVar
352259 228 ClinVar
352260 242 ClinVar
352261 246 ClinVar
352262 256 ClinVar
904228 258 ClinVar
352263 275 ClinVar
905017 287 ClinVar
905018 353 ClinVar
352264 357 ClinVar
352265 365 ClinVar
905019 395 ClinVar
352266 402 ClinVar
905020 411 ClinVar
352267 427 ClinVar
352268 537 ClinVar
352269 569 ClinVar
906600 630 ClinVar
352270 705 ClinVar
352271 711 ClinVar
352272 711 ClinVar
906601 725 ClinVar
906602 791 ClinVar
352273 825 ClinVar
352274 861 ClinVar
907620 863 ClinVar
907621 865 ClinVar
352275 869 ClinVar
907622 904 ClinVar
352276 939 ClinVar
352277 945 ClinVar
907623 985 ClinVar
904286 1069 ClinVar
352278 1231 ClinVar
352279 1242 ClinVar
352280 1247 ClinVar
352281 1273 ClinVar
904287 1313 ClinVar
352282 1363 ClinVar
352283 1411 ClinVar
352284 1446 ClinVar
904288 1674 ClinVar
352285 1696 ClinVar
905086 1709 ClinVar
352286 1830 ClinVar
352287 1867 ClinVar
352288 1900 ClinVar
905087 1928 ClinVar
352289 1995 ClinVar
905088 2010 ClinVar
352290 2114 ClinVar
352291 2142 ClinVar
906670 2207 ClinVar
906671 2364 ClinVar
352292 2431 ClinVar
906672 2453 ClinVar
352293 2480 ClinVar
352294 2520 ClinVar
352295 2530 ClinVar
352296 2551 ClinVar
907699 2620 ClinVar
352297 2625 ClinVar
352298 2644 ClinVar
352299 2696 ClinVar
352300 2714 ClinVar
352301 2768 ClinVar
352302 2802 ClinVar
352303 2850 ClinVar
COSN28525455 16 COSMIC
COSN30102431 18 COSMIC
COSN31563607 18 COSMIC
COSN167620 29 COSMIC
COSN31496460 45 COSMIC
COSN30558959 46 COSMIC
COSN30451012 51 COSMIC
COSN30470514 81 COSMIC
COSN30164850 89 COSMIC
COSN30129727 97 COSMIC
COSN30168050 110 COSMIC
COSN18748831 123 COSMIC
COSN167621 145 COSMIC
COSN14746830 228 COSMIC
COSN24394233 239 COSMIC
COSN31603889 243 COSMIC
COSN32061994 358 COSMIC
COSN20102078 377 COSMIC
COSN32062173 724 COSMIC
COSN18898698 725 COSMIC
COSN20839091 1065 COSMIC
COSN7880589 2222 COSMIC
COSN32062447 2520 COSMIC
COSN26857009 2718 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1048723 1 dbSNP
rs756637678 3 dbSNP
rs778266121 4 dbSNP
rs1292645311 11 dbSNP
rs1412366642 21 dbSNP
rs754133078 28 dbSNP
rs9324685 29 dbSNP
rs372056444 30 dbSNP
rs1220083839 49 dbSNP
rs746123189 52 dbSNP
rs1176896866 53 dbSNP
rs928461300 54 dbSNP
rs1352422557 55 dbSNP
rs1431157020 59 dbSNP
rs905782763 61 dbSNP
rs1412045557 63 dbSNP
rs1468223954 63 dbSNP
rs772155389 66 dbSNP
rs565719946 68 dbSNP
rs1002761153 69 dbSNP
rs1383444561 70 dbSNP
rs1315545938 73 dbSNP
rs1245966192 86 dbSNP
rs748106664 87 dbSNP
rs1164916817 91 dbSNP
rs1474516455 91 dbSNP
rs774301017 92 dbSNP
rs773289608 94 dbSNP
rs762798717 95 dbSNP
rs1223484880 96 dbSNP
rs770872418 101 dbSNP
rs1057419045 107 dbSNP
rs1487110054 114 dbSNP
rs1203484699 118 dbSNP
rs1307913815 129 dbSNP
rs886315063 132 dbSNP
rs1005107653 135 dbSNP
rs1293314574 140 dbSNP
rs9324686 145 dbSNP
rs759152227 150 dbSNP
rs1163705339 153 dbSNP
rs375810746 158 dbSNP
rs767039864 159 dbSNP
rs1444811601 163 dbSNP
rs1201848712 165 dbSNP
rs369948657 166 dbSNP
rs760181457 167 dbSNP
rs1175037046 168 dbSNP
rs764543724 170 dbSNP
rs1455229082 173 dbSNP
rs754361992 181 dbSNP
rs1359343579 182 dbSNP
rs1405240376 183 dbSNP
rs941997001 184 dbSNP
rs1304549192 187 dbSNP
rs886060269 189 dbSNP
rs1404748369 190 dbSNP
rs147601669 193 dbSNP
rs1319258410 202 dbSNP
rs576877017 206 dbSNP
rs1443349059 208 dbSNP
rs1237521523 220 dbSNP
rs372430796 221 dbSNP
rs1179237442 222 dbSNP
rs537947985 227 dbSNP
rs989 228 dbSNP
rs148662528 232 dbSNP
rs570818011 234 dbSNP
rs1190419462 235 dbSNP
rs780339678 238 dbSNP
rs1361663628 239 dbSNP
rs377505668 242 dbSNP
rs1237685170 244 dbSNP
rs1191263965 245 dbSNP
rs542291291 246 dbSNP
rs1369821522 249 dbSNP
rs1303084406 251 dbSNP
rs376979280 254 dbSNP
rs573098884 254 dbSNP
rs554213467 255 dbSNP
rs75026189 256 dbSNP
rs536229935 258 dbSNP
rs760474662 259 dbSNP
rs1162108344 260 dbSNP
rs1161390356 274 dbSNP
rs886060270 275 dbSNP
rs1191481237 283 dbSNP
rs1368002361 283 dbSNP
rs1037472231 284 dbSNP
rs766120281 287 dbSNP
rs1204412837 288 dbSNP
rs1484861754 309 dbSNP
rs969980708 319 dbSNP
rs1261923008 331 dbSNP
rs545996986 332 dbSNP
rs995846842 336 dbSNP
rs1001402253 339 dbSNP
rs1035510609 351 dbSNP
rs564679676 353 dbSNP
rs189626755 357 dbSNP
rs1048724 362 dbSNP
rs1008960960 363 dbSNP
rs954440495 363 dbSNP
rs201142293 364 dbSNP
rs1360521857 365 dbSNP
rs1367283280 365 dbSNP
rs1420429489 365 dbSNP
rs397712620 365 dbSNP
rs1031280499 367 dbSNP
rs983568153 375 dbSNP
rs1172079587 377 dbSNP
rs78108878 377 dbSNP
rs1244932509 378 dbSNP
rs1289412018 379 dbSNP
rs1361484939 380 dbSNP
rs1222234642 381 dbSNP
rs1240974190 382 dbSNP
rs1484621246 391 dbSNP
rs907927303 394 dbSNP
rs574467377 395 dbSNP
rs1192230204 396 dbSNP
rs116809628 402 dbSNP
rs181890739 411 dbSNP
rs375874064 412 dbSNP
rs1485089758 421 dbSNP
rs1387488753 426 dbSNP
rs370699960 427 dbSNP
rs1159054355 428 dbSNP
rs1343456811 431 dbSNP
rs1256909985 433 dbSNP
rs980892944 440 dbSNP
rs1306239821 441 dbSNP
rs1298439467 450 dbSNP
rs928017125 453 dbSNP
rs1052006460 455 dbSNP
rs939398282 465 dbSNP
rs1321342500 493 dbSNP
rs1416801246 497 dbSNP
rs1382303703 500 dbSNP
rs912077905 502 dbSNP
rs1167071703 516 dbSNP
rs983162738 521 dbSNP
rs1450801232 530 dbSNP
rs935477124 536 dbSNP
rs151210034 537 dbSNP
rs891501987 542 dbSNP
rs1189475912 547 dbSNP
rs546945897 553 dbSNP
rs1442602294 562 dbSNP
rs886060271 569 dbSNP
rs765695789 570 dbSNP
rs1249432312 576 dbSNP
rs1315098947 579 dbSNP
rs748208365 580 dbSNP
rs1037503515 581 dbSNP
rs1011271440 584 dbSNP
rs866216142 588 dbSNP
rs374360638 591 dbSNP
rs1042740824 602 dbSNP
rs905517101 604 dbSNP
rs1219721966 615 dbSNP
rs931813515 625 dbSNP
rs184763035 630 dbSNP
rs1050155178 631 dbSNP
rs533014440 641 dbSNP
rs1035542023 642 dbSNP
rs890188996 645 dbSNP
rs1181377872 647 dbSNP
rs1008582188 648 dbSNP
rs959917074 651 dbSNP
rs758698792 661 dbSNP
rs1005089834 669 dbSNP
rs140405440 670 dbSNP
rs1472869745 673 dbSNP
rs143552628 688 dbSNP
rs1420516813 689 dbSNP
rs1421465158 699 dbSNP
rs1199694877 700 dbSNP
rs1159983517 701 dbSNP
rs973467195 702 dbSNP
rs1468402939 704 dbSNP
rs569818818 705 dbSNP
rs1035122425 709 dbSNP
rs1360017895 710 dbSNP
rs1379428190 711 dbSNP
rs202239462 711 dbSNP
rs35982513 711 dbSNP
rs397884529 711 dbSNP
rs1309666694 712 dbSNP
rs1448442963 713 dbSNP
rs1278808160 724 dbSNP
rs370553515 724 dbSNP
rs112641014 725 dbSNP
rs1230168921 726 dbSNP
rs1288359519 728 dbSNP
rs1322260456 733 dbSNP
rs1405440586 738 dbSNP
rs1383539864 743 dbSNP
rs1156326295 744 dbSNP
rs953331944 748 dbSNP
rs987743201 754 dbSNP
rs982807537 755 dbSNP
rs908506505 756 dbSNP
rs912093574 757 dbSNP
rs1454151808 763 dbSNP
rs1251673547 767 dbSNP
rs935518895 770 dbSNP
rs1201555190 774 dbSNP
rs988747159 787 dbSNP
rs181571430 791 dbSNP
rs947160838 792 dbSNP
rs1203503759 798 dbSNP
rs1356088828 799 dbSNP
rs558475439 803 dbSNP
rs1233277956 806 dbSNP
rs905548248 815 dbSNP
rs186626408 825 dbSNP
rs1437047876 828 dbSNP
rs1231583892 832 dbSNP
rs1325816130 833 dbSNP
rs1057050690 846 dbSNP
rs1315573145 851 dbSNP
rs1421040013 853 dbSNP
rs1360750509 854 dbSNP
rs1172697652 856 dbSNP
rs751625171 858 dbSNP
rs368971605 861 dbSNP
rs1393592080 862 dbSNP
rs781320720 863 dbSNP
rs191120902 865 dbSNP
rs1191089937 866 dbSNP
rs886060272 869 dbSNP
rs1489346082 875 dbSNP
rs890214309 876 dbSNP
rs1479485726 877 dbSNP
rs944419774 888 dbSNP
rs1178729231 893 dbSNP
rs898986136 895 dbSNP
rs994937907 896 dbSNP
rs1052182104 897 dbSNP
rs1268400202 902 dbSNP
rs1409669337 905 dbSNP
rs1029060668 906 dbSNP
rs1311756148 914 dbSNP
rs1327876656 917 dbSNP
rs892164688 919 dbSNP
rs1360574397 920 dbSNP
rs534926050 924 dbSNP
rs1415454397 929 dbSNP
rs1411547062 931 dbSNP
rs987437403 933 dbSNP
rs1018936798 936 dbSNP
rs957215132 938 dbSNP
rs1130163 939 dbSNP
rs572376253 941 dbSNP
rs915422744 942 dbSNP
rs149174 945 dbSNP
rs978500067 946 dbSNP
rs1239480399 947 dbSNP
rs927006244 952 dbSNP
rs1437080883 954 dbSNP
rs1270626083 955 dbSNP
rs558009105 967 dbSNP
rs748159813 968 dbSNP
rs1173815508 977 dbSNP
rs866309305 985 dbSNP
rs895466919 989 dbSNP
rs1303129634 990 dbSNP
rs1449210230 1001 dbSNP
rs940633668 1002 dbSNP
rs35568032 1010 dbSNP
rs15860 1014 dbSNP
rs960832882 1017 dbSNP
rs1036254863 1022 dbSNP
rs1206380584 1024 dbSNP
rs983307903 1033 dbSNP
rs1268762864 1036 dbSNP
rs899017755 1040 dbSNP
rs1015677258 1049 dbSNP
rs962709421 1058 dbSNP
rs1448241513 1059 dbSNP
rs772135107 1059 dbSNP
rs576574973 1069 dbSNP
rs974031985 1070 dbSNP
rs543560957 1077 dbSNP
rs1201672003 1078 dbSNP
rs1211265427 1082 dbSNP
rs1247382405 1088 dbSNP
rs1323070647 1093 dbSNP
rs1029092038 1100 dbSNP
rs1222793233 1102 dbSNP
rs889236166 1106 dbSNP
rs1008978233 1107 dbSNP
rs1307490532 1125 dbSNP
rs1449528810 1132 dbSNP
rs911747681 1138 dbSNP
rs1325903804 1139 dbSNP
rs1456842230 1140 dbSNP
rs1166408351 1143 dbSNP
rs1351629659 1146 dbSNP
rs944552070 1157 dbSNP
rs1052635263 1163 dbSNP
rs913637180 1174 dbSNP
rs1431373824 1177 dbSNP
rs1169026108 1178 dbSNP
rs1364880228 1181 dbSNP
rs1489432431 1183 dbSNP
rs562785409 1193 dbSNP
rs879332294 1208 dbSNP
rs1314741318 1222 dbSNP
rs1403086920 1222 dbSNP
rs1287785617 1224 dbSNP
rs1287573440 1231 dbSNP
rs201288211 1231 dbSNP
rs397883774 1231 dbSNP
rs1370396980 1239 dbSNP
rs541818620 1242 dbSNP
rs760209124 1247 dbSNP
rs1429542913 1252 dbSNP
rs1022520631 1254 dbSNP
rs200856540 1272 dbSNP
rs1356752715 1273 dbSNP
rs201799049 1273 dbSNP
rs397716595 1273 dbSNP
rs1343908606 1277 dbSNP
rs1056711686 1284 dbSNP
rs1229594421 1289 dbSNP
rs1291583152 1290 dbSNP
rs1357851807 1291 dbSNP
rs1185417666 1294 dbSNP
rs896687610 1299 dbSNP
rs541345989 1313 dbSNP
rs1016123303 1315 dbSNP
rs1255727986 1323 dbSNP
rs1346726685 1323 dbSNP
rs962740601 1330 dbSNP
rs995485542 1339 dbSNP
rs1302659766 1345 dbSNP
rs1381721661 1351 dbSNP
rs1028246461 1358 dbSNP
rs980871303 1361 dbSNP
rs886060273 1363 dbSNP
rs1446528056 1365 dbSNP
rs926791102 1368 dbSNP
rs1467443013 1371 dbSNP
rs1378130026 1373 dbSNP
rs954037942 1375 dbSNP
rs1476806263 1377 dbSNP
rs958473388 1379 dbSNP
rs770712692 1381 dbSNP
rs1244025740 1383 dbSNP
rs992578142 1384 dbSNP
rs916916097 1388 dbSNP
rs986491729 1390 dbSNP
rs1253706075 1401 dbSNP
rs146782771 1403 dbSNP
rs940346735 1406 dbSNP
rs1036692772 1407 dbSNP
rs532825835 1409 dbSNP
rs181014044 1411 dbSNP
rs1219372698 1413 dbSNP
rs966299714 1434 dbSNP
rs153450 1446 dbSNP
rs888931335 1452 dbSNP
rs1399585452 1455 dbSNP
rs1402572367 1460 dbSNP
rs1009423626 1463 dbSNP
rs530626896 1475 dbSNP
rs1043423169 1480 dbSNP
rs552596465 1481 dbSNP
rs11262 1482 dbSNP
rs1366350927 1490 dbSNP
rs1009530448 1491 dbSNP
rs1424047727 1493 dbSNP
rs1022511710 1499 dbSNP
rs1198447974 1502 dbSNP
rs1456801824 1506 dbSNP
rs1381087269 1517 dbSNP
rs968310896 1534 dbSNP
rs1401775469 1535 dbSNP
rs1002393492 1546 dbSNP
rs1266527942 1547 dbSNP
rs1263772559 1553 dbSNP
rs1247196753 1556 dbSNP
rs1341325692 1558 dbSNP
rs185065661 1563 dbSNP
rs1033838529 1567 dbSNP
rs1444362087 1569 dbSNP
rs1350634173 1574 dbSNP
rs896722834 1578 dbSNP
rs1203457523 1581 dbSNP
rs534887805 1582 dbSNP
rs993007672 1583 dbSNP
rs1387882277 1589 dbSNP
rs546611992 1595 dbSNP
rs1164518535 1599 dbSNP
rs1037178703 1609 dbSNP
rs916968285 1630 dbSNP
rs962024586 1633 dbSNP
rs898592821 1634 dbSNP
rs971793059 1642 dbSNP
rs1178387529 1643 dbSNP
rs1438300268 1646 dbSNP
rs1240414702 1650 dbSNP
rs1179747280 1660 dbSNP
rs1203276290 1665 dbSNP
rs570980806 1666 dbSNP
rs1211749892 1669 dbSNP
rs920253935 1674 dbSNP
rs1285645288 1679 dbSNP
rs1237686258 1682 dbSNP
rs1189419745 1694 dbSNP
rs115956086 1696 dbSNP
rs1435616614 1696 dbSNP
rs1368982573 1698 dbSNP
rs1329304984 1701 dbSNP
rs1050319318 1703 dbSNP
rs1469616524 1709 dbSNP
rs1386897196 1710 dbSNP
rs1359485865 1714 dbSNP
rs539494761 1718 dbSNP
rs944530778 1727 dbSNP
rs1421149428 1734 dbSNP
rs1390212355 1736 dbSNP
rs1040861980 1750 dbSNP
rs892517305 1752 dbSNP
rs1335701587 1755 dbSNP
rs1019291697 1759 dbSNP
rs1403515162 1770 dbSNP
rs140540848 1773 dbSNP
rs1452327772 1776 dbSNP
rs191050130 1782 dbSNP
rs1010057941 1788 dbSNP
rs1398127536 1789 dbSNP
rs988380276 1790 dbSNP
rs1489408545 1799 dbSNP
rs1286418195 1800 dbSNP
rs1218469795 1803 dbSNP
rs1342760516 1805 dbSNP
rs1276606791 1806 dbSNP
rs1335670747 1813 dbSNP
rs1237537987 1815 dbSNP
rs1043731169 1817 dbSNP
rs1401418304 1823 dbSNP
rs1360809506 1824 dbSNP
rs903851433 1827 dbSNP
rs3806952 1830 dbSNP
rs1329964242 1831 dbSNP
rs1414314484 1839 dbSNP
rs555509927 1842 dbSNP
rs532326227 1848 dbSNP
rs773887985 1856 dbSNP
rs979216817 1859 dbSNP
rs1174760771 1862 dbSNP
rs371212055 1865 dbSNP
rs3806953 1867 dbSNP
rs1191644098 1871 dbSNP
rs1013722512 1893 dbSNP
rs1264232652 1894 dbSNP
rs886060274 1900 dbSNP
rs961861909 1907 dbSNP
rs372489813 1908 dbSNP
rs1432779353 1910 dbSNP
rs971785873 1919 dbSNP
rs1275722579 1920 dbSNP
rs1027350022 1925 dbSNP
rs1413471325 1928 dbSNP
rs940247426 1936 dbSNP
rs1445366358 1941 dbSNP
rs763507795 1951 dbSNP
rs1472622991 1952 dbSNP
rs1037237278 1958 dbSNP
rs986063135 1961 dbSNP
rs1400265633 1964 dbSNP
rs1168596356 1966 dbSNP
rs1478878137 1974 dbSNP
rs1420490396 1975 dbSNP
rs1375564900 1978 dbSNP
rs1467308199 1988 dbSNP
rs12516391 1995 dbSNP
rs1238946405 1997 dbSNP
rs1396226459 1998 dbSNP
rs944545681 2006 dbSNP
rs1049829299 2012 dbSNP
rs975975108 2014 dbSNP
rs913707114 2021 dbSNP
rs1390127072 2022 dbSNP
rs945510698 2023 dbSNP
rs1199976427 2024 dbSNP
rs577565833 2026 dbSNP
rs1043762479 2039 dbSNP
rs903882806 2054 dbSNP
rs568732529 2071 dbSNP
rs1226213654 2072 dbSNP
rs1380934185 2083 dbSNP
rs1286294938 2086 dbSNP
rs1055314003 2100 dbSNP
rs896770256 2105 dbSNP
rs544633353 2108 dbSNP
rs1376794281 2113 dbSNP
rs886060275 2114 dbSNP
rs901762830 2120 dbSNP
rs1281519607 2128 dbSNP
rs1355138193 2131 dbSNP
rs1015784910 2133 dbSNP
rs153449 2142 dbSNP
rs1403783935 2143 dbSNP
rs1020882568 2148 dbSNP
rs1416292687 2157 dbSNP
rs1183952903 2163 dbSNP
rs967899128 2174 dbSNP
rs1236139285 2182 dbSNP
rs1180371941 2186 dbSNP
rs979247934 2200 dbSNP
rs145689253 2201 dbSNP
rs375679727 2202 dbSNP
rs1218798880 2209 dbSNP
rs1033443023 2210 dbSNP
rs561047446 2216 dbSNP
rs1247170495 2217 dbSNP
rs951694320 2221 dbSNP
rs992237083 2222 dbSNP
rs1374747740 2223 dbSNP
rs917625339 2223 dbSNP
rs1292993176 2234 dbSNP
rs528335575 2235 dbSNP
rs985758411 2236 dbSNP
rs1164374637 2243 dbSNP
rs972982311 2243 dbSNP
rs554614171 2254 dbSNP
rs1378201064 2258 dbSNP
rs1160272974 2263 dbSNP
rs755517801 2264 dbSNP
rs1188938554 2265 dbSNP
rs1483382132 2272 dbSNP
rs931493036 2282 dbSNP
rs1215369940 2288 dbSNP
rs1487121279 2291 dbSNP
rs546869021 2297 dbSNP
rs571403858 2302 dbSNP
rs945189560 2303 dbSNP
rs1301261456 2304 dbSNP
rs1049859948 2308 dbSNP
rs1303862742 2311 dbSNP
rs1369743751 2311 dbSNP
rs1434473205 2315 dbSNP
rs1176370232 2324 dbSNP
rs889868811 2339 dbSNP
rs1358912951 2341 dbSNP
rs979489782 2342 dbSNP
rs1454171901 2348 dbSNP
rs1376995303 2352 dbSNP
rs532444060 2354 dbSNP
rs1434854865 2355 dbSNP
rs1041520712 2357 dbSNP
rs566427956 2364 dbSNP
rs1476621124 2365 dbSNP
rs1170919489 2376 dbSNP
rs938091130 2388 dbSNP
rs1264950637 2404 dbSNP
rs1371701037 2405 dbSNP
rs891837124 2406 dbSNP
rs1055090856 2407 dbSNP
rs1020914994 2408 dbSNP
rs1369389703 2420 dbSNP
rs896462974 2426 dbSNP
rs1404894632 2427 dbSNP
rs3734041 2431 dbSNP
rs569734211 2432 dbSNP
rs1218146594 2451 dbSNP
rs1037658502 2453 dbSNP
rs750703170 2454 dbSNP
rs1387520070 2458 dbSNP
rs1382999463 2459 dbSNP
rs1401165466 2462 dbSNP
rs1308348699 2466 dbSNP
rs1000720033 2472 dbSNP
rs533895518 2476 dbSNP
rs886060276 2480 dbSNP
rs756257410 2481 dbSNP
rs1425153606 2493 dbSNP
rs1193381519 2499 dbSNP
rs1342709872 2502 dbSNP
rs1048849150 2505 dbSNP
rs887559828 2519 dbSNP
rs138240164 2520 dbSNP
rs1017299553 2522 dbSNP
rs149180405 2525 dbSNP
rs1264369486 2528 dbSNP
rs747946670 2530 dbSNP
rs567034017 2548 dbSNP
rs886060277 2551 dbSNP
rs1198088983 2556 dbSNP
rs1025126262 2559 dbSNP
rs961099039 2563 dbSNP
rs1228369472 2564 dbSNP
rs1191316000 2584 dbSNP
rs113128701 2585 dbSNP
rs1397620739 2587 dbSNP
rs567514360 2588 dbSNP
rs1260568233 2589 dbSNP
rs1330514996 2593 dbSNP
rs1447355208 2605 dbSNP
rs1021252622 2615 dbSNP
rs1190844019 2619 dbSNP
rs772153529 2620 dbSNP
rs886060278 2625 dbSNP
rs1391174191 2632 dbSNP
rs1424541136 2635 dbSNP
rs576999561 2638 dbSNP
rs777790635 2642 dbSNP
rs534955137 2643 dbSNP
rs114108271 2644 dbSNP
rs1244139189 2649 dbSNP
rs1458449869 2649 dbSNP
rs1288436684 2664 dbSNP
rs1178508546 2665 dbSNP
rs911427322 2666 dbSNP
rs1252713172 2668 dbSNP
rs1386715976 2669 dbSNP
rs1196506364 2671 dbSNP
rs1437561487 2673 dbSNP
rs34492898 2688 dbSNP
rs1299458258 2695 dbSNP
rs770518416 2696 dbSNP
rs1444429094 2698 dbSNP
rs959474422 2698 dbSNP
rs183242789 2700 dbSNP
rs774921338 2700 dbSNP
rs1385790780 2705 dbSNP
rs201627590 2713 dbSNP
rs1180521084 2714 dbSNP
rs35384604 2714 dbSNP
rs1245093837 2717 dbSNP
rs200150752 2718 dbSNP
rs1424922150 2720 dbSNP
rs1323470865 2721 dbSNP
rs1158454693 2726 dbSNP
rs913295193 2728 dbSNP
rs946045947 2744 dbSNP
rs1366113484 2751 dbSNP
rs1182608240 2756 dbSNP
rs1451038018 2759 dbSNP
rs117832237 2768 dbSNP
rs1259643709 2771 dbSNP
rs949393143 2774 dbSNP
rs1285003024 2780 dbSNP
rs1463219059 2783 dbSNP
rs1237753806 2788 dbSNP
rs1037290014 2790 dbSNP
rs918801161 2793 dbSNP
rs575340052 2801 dbSNP
rs111935946 2802 dbSNP
rs1328796218 2803 dbSNP
rs745598662 2814 dbSNP
rs561012055 2826 dbSNP
rs1048634178 2829 dbSNP
rs1405139181 2831 dbSNP
rs769315888 2840 dbSNP
rs1297956612 2844 dbSNP
rs1180521982 2849 dbSNP
rs10076053 2850 dbSNP
rs1007328969 2858 dbSNP
rs1159590643 2867 dbSNP
rs540012441 2872 dbSNP
rs565102108 2881 dbSNP
rs1424962370 2888 dbSNP
rs763236680 2892 dbSNP
rs143342609 2897 dbSNP
rs1024739579 2904 dbSNP
rs1458978501 2924 dbSNP
rs1262816244 2928 dbSNP
rs1214172953 2933 dbSNP
rs764611573 2939 dbSNP
rs1448447727 2945 dbSNP
rs1321491459 2946 dbSNP
rs550876876 2949 dbSNP
rs1446974969 2951 dbSNP
rs1342827724 2956 dbSNP
rs1284614046 2967 dbSNP
rs1223654648 2968 dbSNP
rs1339437449 2970 dbSNP
rs1026572012 2973 dbSNP
rs1020609911 2978 dbSNP
rs952372435 2981 dbSNP
rs148368808 2982 dbSNP
rs1381236742 2985 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' agugguaacgauuucACGUUaa 5'
                         |||||  
Target 5' ---aucucaccucacUGCAAcc 3'
1 - 19
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000357164.3 | 3UTR | AUCUCACCUCACUGCAACCUCCGCCUCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28544 Breast cancer 0.692 9.0e-5 0.762 7.6e-6 24 Click to see details
GSE14794 Lymphoblastoid cells 0.206 2.6e-2 0.191 3.6e-2 90 Click to see details
GSE42095 Differentiated embryonic stem cells 0.387 3.4e-2 0.465 1.3e-2 23 Click to see details
GSE26953 Aortic valvular endothelial cells 0.31 7.0e-2 0.276 9.6e-2 24 Click to see details
GSE38226 Liver fibrosis -0.308 8.7e-2 -0.245 1.4e-1 21 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.28 1.2e-1 0.113 3.2e-1 20 Click to see details
GSE28260 Renal cortex and medulla 0.341 1.3e-1 0.323 1.4e-1 13 Click to see details
GSE17498 Multiple myeloma 0.183 1.3e-1 0.214 9.2e-2 40 Click to see details
GSE32688 Pancreatic cancer 0.152 2.0e-1 0.187 1.5e-1 32 Click to see details
GSE21849 B cell lymphoma -0.117 2.7e-1 0.032 4.3e-1 29 Click to see details
GSE27834 Pluripotent stem cells -0.122 3.3e-1 -0.191 2.4e-1 16 Click to see details
GSE19350 CNS germ cell tumors 0.135 3.4e-1 0.231 2.4e-1 12 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.083 3.5e-1 0.145 2.4e-1 25 Click to see details
GSE17306 Multiple myeloma -0.047 3.7e-1 0.435 8.9e-4 49 Click to see details
GSE15076 Monocyte-derived dendritic cells -0.119 4.2e-1 -0.200 3.7e-1 5 Click to see details
GSE21687 Ependynoma primary tumors -0.018 4.4e-1 -0.068 3.0e-1 64 Click to see details
GSE21687 Ependynoma primary tumors -0.018 4.4e-1 -0.068 3.0e-1 64 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
255 hsa-miR-367-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055315 DUSP5 dual specificity phosphatase 5 2 8
MIRT055791 PLEKHA1 pleckstrin homology domain containing A1 2 12
MIRT057114 DDIT4 DNA damage inducible transcript 4 2 4
MIRT059663 GATAD2B GATA zinc finger domain containing 2B 2 2
MIRT059926 ZDHHC5 zinc finger DHHC-type containing 5 2 2
MIRT061610 BTG2 BTG anti-proliferation factor 2 2 6
MIRT066478 HMGA2 high mobility group AT-hook 2 2 2
MIRT069388 ZFYVE21 zinc finger FYVE-type containing 21 2 2
MIRT069972 GEMIN2 gem nuclear organelle associated protein 2 2 2
MIRT074764 CNEP1R1 CTD nuclear envelope phosphatase 1 regulatory subunit 1 2 2
MIRT076199 GID4 GID complex subunit 4 homolog 2 6
MIRT077512 UBE2Z ubiquitin conjugating enzyme E2 Z 2 4
MIRT077903 TOB1 transducer of ERBB2, 1 2 6
MIRT082250 MED29 mediator complex subunit 29 2 4
MIRT082434 CIC capicua transcriptional repressor 2 6
MIRT082474 PPP1R37 protein phosphatase 1 regulatory subunit 37 2 2
MIRT082778 ZNF264 zinc finger protein 264 2 2
MIRT084533 BCL2L11 BCL2 like 11 2 8
MIRT085309 UBXN4 UBX domain protein 4 2 8
MIRT086365 SSFA2 sperm specific antigen 2 2 8
MIRT087455 NF2 neurofibromin 2 2 2
MIRT088865 FOXN2 forkhead box N2 2 12
MIRT092185 ITPR1 inositol 1,4,5-trisphosphate receptor type 1 2 6
MIRT092326 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 6
MIRT093533 GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 2 6
MIRT096935 PAPD7 poly(A) RNA polymerase D7, non-canonical 2 8
MIRT097026 MAP1B microtubule associated protein 1B 2 4
MIRT099137 MYLIP myosin regulatory light chain interacting protein 2 6
MIRT099905 SOX4 SRY-box 4 2 12
MIRT102289 DNAJB9 DnaJ heat shock protein family (Hsp40) member B9 2 10
MIRT102507 KLHDC10 kelch domain containing 10 2 2
MIRT102891 INSIG1 insulin induced gene 1 2 2
MIRT109188 VMA21 VMA21, vacuolar ATPase assembly factor 2 4
MIRT124567 PRRC2B proline rich coiled-coil 2B 2 2
MIRT135568 SPRYD4 SPRY domain containing 4 2 2
MIRT161135 SLC25A36 solute carrier family 25 member 36 2 6
MIRT163995 KIAA1109 KIAA1109 2 4
MIRT164689 RNF4 ring finger protein 4 2 2
MIRT167705 HIVEP1 human immunodeficiency virus type I enhancer binding protein 1 2 8
MIRT178956 USP28 ubiquitin specific peptidase 28 2 2
MIRT185717 ARNTL2 aryl hydrocarbon receptor nuclear translocator like 2 2 2
MIRT186264 TCEB3 elongin A 2 2
MIRT186537 TWF1 twinfilin actin binding protein 1 2 4
MIRT186628 COX20 COX20, cytochrome c oxidase assembly factor 2 8
MIRT189373 TXLNA taxilin alpha 2 4
MIRT197013 EIF1 eukaryotic translation initiation factor 1 2 10
MIRT206437 YIPF4 Yip1 domain family member 4 2 2
MIRT211228 FGF2 fibroblast growth factor 2 2 10
MIRT214529 C5ORF24 chromosome 5 open reading frame 24 2 2
MIRT216034 IL6ST interleukin 6 signal transducer 2 10
MIRT218084 TULP4 tubby like protein 4 2 2
MIRT242418 CCDC113 coiled-coil domain containing 113 2 2
MIRT243162 SOX11 SRY-box 11 2 2
MIRT250943 CDK5R1 cyclin dependent kinase 5 regulatory subunit 1 2 4
MIRT253350 ZNF417 zinc finger protein 417 2 2
MIRT271968 ARF1 ADP ribosylation factor 1 2 2
MIRT273214 ZNF695 zinc finger protein 695 2 4
MIRT296114 SLC12A5 solute carrier family 12 member 5 2 2
MIRT301711 TEF TEF, PAR bZIP transcription factor 2 2
MIRT316477 ARID1B AT-rich interaction domain 1B 2 6
MIRT322174 CLN8 CLN8, transmembrane ER and ERGIC protein 2 4
MIRT341538 CNIH1 cornichon family AMPA receptor auxiliary protein 1 2 6
MIRT356062 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT443579 PPIC peptidylprolyl isomerase C 2 2
MIRT448825 FKBP1A FK506 binding protein 1A 2 4
MIRT451494 FOPNL FGFR1OP N-terminal like 2 2
MIRT452694 MDM2 MDM2 proto-oncogene 2 2
MIRT453167 CNOT4 CCR4-NOT transcription complex subunit 4 2 6
MIRT454588 SLC33A1 solute carrier family 33 member 1 2 4
MIRT455794 TAF8 TATA-box binding protein associated factor 8 2 4
MIRT456010 CYP2C19 cytochrome P450 family 2 subfamily C member 19 2 2
MIRT456044 KIAA1586 KIAA1586 2 2
MIRT456763 TMEM239 transmembrane protein 239 2 4
MIRT458068 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT459230 MRPS21 mitochondrial ribosomal protein S21 2 2
MIRT459534 MFF mitochondrial fission factor 2 6
MIRT459759 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT460236 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT461104 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT462924 ZNRF3 zinc and ring finger 3 2 2
MIRT463476 ZC3HAV1L zinc finger CCCH-type containing, antiviral 1 like 2 2
MIRT463516 ZBTB8B zinc finger and BTB domain containing 8B 2 4
MIRT465503 TOR1B torsin family 1 member B 2 2
MIRT469525 RBFOX2 RNA binding protein, fox-1 homolog 2 2 8
MIRT470079 PTGES2 prostaglandin E synthase 2 2 2
MIRT471581 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT473451 MCOLN2 mucolipin 2 2 8
MIRT475882 H3F3C H3 histone family member 3C 2 10
MIRT475915 H3F3B H3 histone family member 3B 2 8
MIRT476195 GOLGA8A golgin A8 family member A 2 10
MIRT476318 GM2A GM2 ganglioside activator 2 2
MIRT476676 FUT11 fucosyltransferase 11 2 10
MIRT478368 DDI2 DNA damage inducible 1 homolog 2 2 2
MIRT479545 CDC5L cell division cycle 5 like 2 2
MIRT481024 BAZ2B bromodomain adjacent to zinc finger domain 2B 2 2
MIRT491009 ATF7IP activating transcription factor 7 interacting protein 2 2
MIRT493168 MKNK2 MAP kinase interacting serine/threonine kinase 2 2 2
MIRT494345 CASKIN1 CASK interacting protein 1 2 2
MIRT499087 ZDHHC21 zinc finger DHHC-type containing 21 2 6
MIRT500029 ABCF2 ATP binding cassette subfamily F member 2 2 8
MIRT501298 RRN3 RRN3 homolog, RNA polymerase I transcription factor 2 4
MIRT503124 BCL11B B-cell CLL/lymphoma 11B 2 8
MIRT503301 GTF2A1 general transcription factor IIA subunit 1 2 6
MIRT504328 ASGR2 asialoglycoprotein receptor 2 2 6
MIRT504471 EID2B EP300 interacting inhibitor of differentiation 2B 2 2
MIRT504655 RPL9 ribosomal protein L9 2 6
MIRT505331 TMF1 TATA element modulatory factor 1 2 8
MIRT505732 SERTAD3 SERTA domain containing 3 2 4
MIRT505827 RSBN1 round spermatid basic protein 1 2 8
MIRT506004 PURG purine rich element binding protein G 2 8
MIRT506308 PCMTD1 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 2 6
MIRT506806 KLHL15 kelch like family member 15 2 6
MIRT507119 GOLGA8B golgin A8 family member B 2 6
MIRT507353 FAM129A family with sequence similarity 129 member A 2 6
MIRT507591 DDX3X DEAD-box helicase 3, X-linked 2 4
MIRT507674 CPEB4 cytoplasmic polyadenylation element binding protein 4 2 4
MIRT507703 CNOT2 CCR4-NOT transcription complex subunit 2 2 8
MIRT508012 BCAT1 branched chain amino acid transaminase 1 2 4
MIRT510439 ZIC5 Zic family member 5 2 6
MIRT510539 XKR7 XK related 7 2 4
MIRT510600 TPPP tubulin polymerization promoting protein 2 6
MIRT511060 NRAS NRAS proto-oncogene, GTPase 2 4
MIRT511855 GOLGA8J golgin A8 family member J 2 6
MIRT511865 GOLGA8I golgin A8 family member I, pseudogene 1 3
MIRT512570 CTDSPL CTD small phosphatase like 2 2
MIRT512708 ZNF134 zinc finger protein 134 2 6
MIRT513177 MOAP1 modulator of apoptosis 1 2 6
MIRT513783 PAWR pro-apoptotic WT1 regulator 2 6
MIRT515099 IRGQ immunity related GTPase Q 2 2
MIRT515481 INCENP inner centromere protein 2 4
MIRT517416 BMP8A bone morphogenetic protein 8a 2 2
MIRT518754 C1orf35 chromosome 1 open reading frame 35 2 2
MIRT519780 ZNF354B zinc finger protein 354B 2 4
MIRT519865 ZFP62 ZFP62 zinc finger protein 2 6
MIRT520510 TRAM2 translocation associated membrane protein 2 2 6
MIRT521068 SLC25A32 solute carrier family 25 member 32 2 6
MIRT526912 ZNF772 zinc finger protein 772 2 6
MIRT527134 GULP1 GULP, engulfment adaptor PTB domain containing 1 2 2
MIRT527867 SLC39A14 solute carrier family 39 member 14 2 2
MIRT528404 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT532956 ZNF24 zinc finger protein 24 2 4
MIRT533021 ZFC3H1 zinc finger C3H1-type containing 2 4
MIRT533191 WASL Wiskott-Aldrich syndrome like 2 6
MIRT534191 SLC7A11 solute carrier family 7 member 11 2 2
MIRT534961 PTAR1 protein prenyltransferase alpha subunit repeat containing 1 2 4
MIRT536396 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT537046 GRAMD4 GRAM domain containing 4 2 2
MIRT537125 GOLGA3 golgin A3 2 4
MIRT537183 GFPT2 glutamine-fructose-6-phosphate transaminase 2 2 4
MIRT537652 ERGIC2 ERGIC and golgi 2 2 4
MIRT538632 CCSER2 coiled-coil serine rich protein 2 2 4
MIRT539231 ANP32E acidic nuclear phosphoprotein 32 family member E 2 6
MIRT540099 NPY4R neuropeptide Y receptor Y4 2 2
MIRT540998 ZNF460 zinc finger protein 460 2 4
MIRT541468 AURKA aurora kinase A 2 2
MIRT542680 SESN3 sestrin 3 2 2
MIRT542757 PRRG4 proline rich and Gla domain 4 2 2
MIRT542863 NUCKS1 nuclear casein kinase and cyclin dependent kinase substrate 1 2 2
MIRT542925 HOXC8 homeobox C8 2 2
MIRT543747 SZRD1 SUZ RNA binding domain containing 1 2 2
MIRT544404 ZSCAN12 zinc finger and SCAN domain containing 12 2 2
MIRT544583 AP5Z1 adaptor related protein complex 5 zeta 1 subunit 2 4
MIRT544662 MED19 mediator complex subunit 19 2 2
MIRT545251 GTF2E1 general transcription factor IIE subunit 1 2 2
MIRT545261 TRIM36 tripartite motif containing 36 2 4
MIRT545744 UHRF1BP1 UHRF1 binding protein 1 2 2
MIRT545999 WDR81 WD repeat domain 81 2 2
MIRT546038 VPS4B vacuolar protein sorting 4 homolog B 2 2
MIRT547170 PDZD8 PDZ domain containing 8 2 2
MIRT547273 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 2
MIRT547729 KIF5B kinesin family member 5B 2 2
MIRT548127 GATA6 GATA binding protein 6 2 2
MIRT548203 FNIP1 folliculin interacting protein 1 2 2
MIRT548756 CNNM4 cyclin and CBS domain divalent metal cation transport mediator 4 2 2
MIRT549641 ZNF75A zinc finger protein 75a 2 2
MIRT549684 ZNF598 zinc finger protein 598 2 2
MIRT550197 MRO maestro 2 2
MIRT550340 IPP intracisternal A particle-promoted polypeptide 2 2
MIRT550536 MYZAP myocardial zonula adherens protein 2 2
MIRT550975 TOR4A torsin family 4 member A 2 2
MIRT551221 CIDEC cell death inducing DFFA like effector c 2 2
MIRT551355 AGBL5 ATP/GTP binding protein like 5 2 2
MIRT551571 LETM1 leucine zipper and EF-hand containing transmembrane protein 1 2 2
MIRT552277 RAB3D RAB3D, member RAS oncogene family 2 2
MIRT552661 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT553081 UCK2 uridine-cytidine kinase 2 2 2
MIRT553753 TBC1D8 TBC1 domain family member 8 2 2
MIRT554030 SPCS3 signal peptidase complex subunit 3 2 2
MIRT554099 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT554155 SLX4 SLX4 structure-specific endonuclease subunit 2 2
MIRT554815 REL REL proto-oncogene, NF-kB subunit 2 2
MIRT555522 PMEPA1 prostate transmembrane protein, androgen induced 1 2 2
MIRT555597 PIP5K1C phosphatidylinositol-4-phosphate 5-kinase type 1 gamma 2 2
MIRT555632 PHLPP2 PH domain and leucine rich repeat protein phosphatase 2 2 4
MIRT555679 PGAM4 phosphoglycerate mutase family member 4 2 4
MIRT555827 PAX9 paired box 9 2 2
MIRT555868 PAIP1 poly(A) binding protein interacting protein 1 2 2
MIRT555939 NUP43 nucleoporin 43 2 2
MIRT555994 NFYB nuclear transcription factor Y subunit beta 2 2
MIRT556340 MAP2K4 mitogen-activated protein kinase kinase 4 2 2
MIRT556432 LONRF3 LON peptidase N-terminal domain and ring finger 3 2 2
MIRT556585 LHFPL2 LHFPL tetraspan subfamily member 2 2 4
MIRT556801 KIAA1958 KIAA1958 2 2
MIRT558047 EXOC5 exocyst complex component 5 2 2
MIRT558697 CLTA clathrin light chain A 2 2
MIRT559191 BMPR1A bone morphogenetic protein receptor type 1A 2 4
MIRT559639 AKAP10 A-kinase anchoring protein 10 2 2
MIRT559707 AEN apoptosis enhancing nuclease 2 2
MIRT560673 SRFBP1 serum response factor binding protein 1 2 2
MIRT560990 GPBP1L1 GC-rich promoter binding protein 1 like 1 2 2
MIRT562170 HOXA13 homeobox A13 2 2
MIRT562275 GNAQ G protein subunit alpha q 2 2
MIRT563624 ZNF277 zinc finger protein 277 2 2
MIRT563815 FMN1 formin 1 2 2
MIRT564096 TLR3 toll like receptor 3 2 2
MIRT565320 TMEM41A transmembrane protein 41A 2 2
MIRT565986 RNF44 ring finger protein 44 2 2
MIRT566047 REV3L REV3 like, DNA directed polymerase zeta catalytic subunit 2 2
MIRT568236 C11orf24 chromosome 11 open reading frame 24 2 2
MIRT568310 BAK1 BCL2 antagonist/killer 1 2 2
MIRT572376 ATOX1 antioxidant 1 copper chaperone 2 2
MIRT574822 CPEB3 cytoplasmic polyadenylation element binding protein 3 2 2
MIRT609212 PELP1 proline, glutamate and leucine rich protein 1 2 2
MIRT616217 RBM27 RNA binding motif protein 27 2 2
MIRT629087 FASLG Fas ligand 2 2
MIRT632124 FKBP9 FK506 binding protein 9 2 2
MIRT632576 POLQ DNA polymerase theta 2 2
MIRT634799 ENTHD1 ENTH domain containing 1 2 2
MIRT636553 ESRP1 epithelial splicing regulatory protein 1 2 2
MIRT640977 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT653875 SH2B3 SH2B adaptor protein 3 2 2
MIRT655598 OTUD7B OTU deubiquitinase 7B 2 2
MIRT659764 CCDC171 coiled-coil domain containing 171 2 2
MIRT660744 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT681037 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 2 2
MIRT682305 RBM28 RNA binding motif protein 28 2 2
MIRT682573 EIF4EBP1 eukaryotic translation initiation factor 4E binding protein 1 2 2
MIRT686217 ZNF267 zinc finger protein 267 2 2
MIRT687209 PLXNA3 plexin A3 2 2
MIRT690630 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT692419 AGMAT agmatinase 2 2
MIRT694437 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 2
MIRT700725 PNO1 partner of NOB1 homolog 2 2
MIRT701549 NARF nuclear prelamin A recognition factor 2 2
MIRT704379 DAND5 DAN domain BMP antagonist family member 5 2 2
MIRT707935 PPP1R3D protein phosphatase 1 regulatory subunit 3D 2 2
MIRT709939 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT711371 MED7 mediator complex subunit 7 2 2
MIRT712327 PER2 period circadian clock 2 2 2
MIRT714515 SHE Src homology 2 domain containing E 2 2
MIRT715520 G2E3 G2/M-phase specific E3 ubiquitin protein ligase 2 2
MIRT724294 OSMR oncostatin M receptor 2 2
MIRT725358 MUC21 mucin 21, cell surface associated 2 2
MIRT732242 KLF4 Kruppel like factor 4 3 1
MIRT735384 SPAG5 sperm associated antigen 5 3 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-367 Medpor NULL NULL Microarray osteoblast-like cells line (MG-63) 18408260 2008 up-regulated
miR-367 Activin A NULL 229455 Quantitative real-time PCR Human embryonic stem (hES) cells 19885849 2010 up-regulated
miR-367 Mistletoe lectin-I NULL NULL Microarray colorectal cancer cells CLY cells 20955366 2011 down-regulated
miR-367 Doxorubicin approved 31703 Quantitative real-time PCR heart 22859947 2012 up-regulated
miR-367 Paclitaxel approved 36314 Microarray Ovarian cancer cell lines 24220856 2014 up-regulated
miR-367 Glucose NULL 5793 Quantitative real-time PCR endothelial cells 24394957 2014 down-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-367 Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-miR-367-3p Doxorubicin 31703 NSC123127 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-367-3p Verapamil 2520 NSC272366 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-367-3p Siop Treatment Protocol sensitive High Nephroblastoma tissue
hsa-miR-367-3p Paclitaxel 36314 NSC125973 approved resistant High Pan-Cancer cell line (NCI-H460, NCI-H522, NCI-H322M, HOP62, A549, EKVX, MALME-3M, NCI-H226, HT-29, HCT-116, SE-620, HCT-15, HCC2998, COLO205, HS-578T, NCI/ADR-RES, OVCAR8, OVCAR4, ACHN, SN-12C, 786-O, CAKI-1, UO-31, TK-10, A498, SK-MEL-28, UACC-257, M14, UACC-62, SK
hsa-miR-367-3p Doxorubicin 31703 NSC123127 approved sensitive High Hepatocellular Carcinoma tissue and cell line (HepG2)
hsa-miR-367-3p Mitoxantrone 4212 NSC279836 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-miR-367-3p Sorafenib 216239 NSC747971 approved sensitive Low Hepatocellular Carcinoma cell line (SKhep1, HA22T)
hsa-miR-367-3p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-367-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM16)
hsa-miR-367-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM36)
hsa-miR-367-3p Sunitinib 5329102 NSC750690 approved resistant tissue (CardA)
hsa-miR-367-3p Paclitaxel 36314 NSC125973 approved sensitive cell line (SKOV3)
hsa-miR-367-3p Cisplatin 5460033 NSC119875 approved resistant cell line (IGROV-1)
hsa-miR-367-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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