pre-miRNA Information
pre-miRNA hsa-mir-4480   
Genomic Coordinates chr10: 12578753 - 12578823
Description Homo sapiens miR-4480 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4480
Sequence 44| AGCCAAGUGGAAGUUACUUUA |64
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 1 10 + 12578796 23291724, 27587585 MiREDiBase
A-to-I 12 10 + 12578807 23291724, 27587585 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs929437808 7 dbSNP
rs1454494557 9 dbSNP
rs1345041659 17 dbSNP
rs561601367 21 dbSNP
Putative Targets

Gene Information
Gene Symbol DDN   
Synonyms -
Description dendrin
Transcript NM_015086   
Expression
Putative miRNA Targets on DDN
3'UTR of DDN
(miRNA target sites are highlighted)
>DDN|NM_015086|3'UTR
   1 GAGGCCCCTTCTTGTATTTGTGTCCCCAACGCATCCATCCTTGGGTCCACTGGTCCCCATTCTTCCCCACAGACTTCCTT
  81 TGCTTCTCTTTTCCTTGTATCTTTACCCATACCTGTTCTCATCCTTGAAATATAAATGAAAGGAAGGGAAGCATATGCCC
 161 ATTAATGATTTTGTTTCAGGAGAGGTGAGAATGAGCAGATTTAATTAATGTCTGTTATGTTCAGGGCACAAGGGTGAGCT
 241 CTTCGCAGGGGCTGATGCACTGGGTGTGGAGCTGAGCAGAGAGGCCTAACCAGGATCAGGCAGGAGGGCAGGGATGGTGG
 321 CAGCCATAGGAGGGCAGGGTAGGGTAGGGCCTCTGAGGAGGAGGGAAAAAGTGAAGGAGAGGCTTTGGACCTGGTGACAG
 401 AGTGATCAGATGACAGAGGGGTTCTTGGGAGAAGAGGCATAGGTCCAGCAACAACCAACAAAGCAGAAGGAGGGCTCACC
 481 TTGGTGTCACAAGTCTTGGATTTCAATCCCAACTCTGCCACTGAGTTGCTGGTTGACTGAGGCCAGTCACTTTCCCTCTC
 561 CAGGCCTCCAGGCCTCCTGGTATATAAAATGATGGTATTCTAAGGTCCATCCTTCCGTCTCTGACATTTTGAGATCTTTG
 641 GAAAGGACTCTATCTCATCCTCCCCTCGACAAGCCAAGAATGAGAATTGGGAATAAGTGAACAGAGTTTGAGGGTTTCTG
 721 GGCGGCCTCCGTGTCACCCAAAGTCATGATCAATTCAGGAGACTGCCCAAGGCTTGCAGAAGAGGTAAGGGAGTGAGGCA
 801 CTCCTATCCCAGTCTCCCAGGTTTGGTTGAGGGCTCCCCAAGGCAGGGCAAGATAGCGGCCCTGTCACTGACCCTGGCCT
 881 GTGGTGGTCTGAGCTGGGGAGGGAAGGACACCAATGAATCAGCTTGGGACCTCTTTAGGCCTTCCCCTTTTCCTCCACCC
 961 CGATGCTCCTTAGTGATGCTCTGAGGCGTGGCCACGATCTCCCTCCCAGGTGGTATCGCCCACCTGAAAAAATCCTGAGA
1041 ATTTCTCCCATCTTGGCCTCTTCCAGAAACCGGCCAGGCAAGGAAAGAGGCCGGTCACCAGAAGCCAGCAGGCGTGGGGT
1121 GTGATACTCTCTATAGCCACTACAGGGCGCGCGCAGGTCGCGGATCTCCCCAGTTGCTAATCCCGGCTCTGCCACTCAAT
1201 CCTATCCCTAGTTCCCGAGCGCGGGTCCCCCGCCTTGCAGTCTCCAGCCGTGCGGGGCCGGGAGCAGGCCTCCGGCCTCC
1281 CAGACTTCTAGAGCCCGCCGGGCCCATCTTTGTACTCATCCACCCCAGCCGGCTTGGGACTCAGACACCGAAGTCTTTTT
1361 TTTTTTCTCTCCGATCCTTGGACACCTCCTCTGTCTGCCATTTATTAGCCATGTGAACTTGGCCACATCACTTCACCTCC
1441 CTGAGCCTCAGTTTCCTCATCTGTCAAATGGGGGTTTATAAACACCTACCTCGCAGGGTTGTTGTGAGGATTTAATGCGA
1521 TAATGTATGTAAAGCGCCTTGCACACTGCCTGGCACACAGTAGGCGCTCAATAAATCTAAGCTTCCCTTT
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' auuUCAUUGAAGGUGAACCGa 5'
             ||  |: |  ||||||| 
Target 5' attAGCCATGTGAACTTGGCc 3'
1404 - 1424 146.00 -8.90
2
miRNA  3' auUUCAUUGAA---GGU-GAACCGa 5'
            :|| ||:||   ||| |||||| 
Target 5' ctGAG-AATTTCTCCCATCTTGGCc 3'
1035 - 1058 130.00 -12.60
3
miRNA  3' auUUCAUUGAAGGUGAACCga 5'
            ||  ||  || :|||||  
Target 5' ccAATGAA--TCAGCTTGGga 3'
911 - 929 115.00 -6.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31487708 1 COSMIC
COSN19691391 8 COSMIC
COSN31542008 28 COSMIC
COSN26369875 31 COSMIC
COSN31498919 49 COSMIC
COSN31496004 58 COSMIC
COSN30521748 62 COSMIC
COSN31567272 72 COSMIC
COSN1148761 86 COSMIC
COSN31599227 101 COSMIC
COSN24384937 146 COSMIC
COSN32058341 459 COSMIC
COSN32088054 548 COSMIC
COSN20109547 808 COSMIC
COSN20092565 820 COSMIC
COSN32058778 1026 COSMIC
COSN7372804 1254 COSMIC
COSN27221088 1356 COSMIC
COSN32137190 1492 COSMIC
rs1054442 1203 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs754138444 3 dbSNP
rs1291448824 5 dbSNP
rs373407933 6 dbSNP
rs529780624 7 dbSNP
rs750583649 11 dbSNP
rs767571349 14 dbSNP
rs762800536 16 dbSNP
rs775455743 20 dbSNP
rs796800740 26 dbSNP
rs769497492 29 dbSNP
rs533283963 31 dbSNP
rs1240626149 42 dbSNP
rs1302521408 43 dbSNP
rs201202402 44 dbSNP
rs925474770 50 dbSNP
rs1470987786 53 dbSNP
rs1209410997 55 dbSNP
rs560244535 57 dbSNP
rs1426041526 62 dbSNP
rs1256498894 69 dbSNP
rs1283328813 72 dbSNP
rs760623284 74 dbSNP
rs890209096 77 dbSNP
rs1236609264 82 dbSNP
rs969928687 106 dbSNP
rs1051494006 109 dbSNP
rs1382624779 109 dbSNP
rs1175994821 110 dbSNP
rs1469002151 113 dbSNP
rs544375240 120 dbSNP
rs1467161210 123 dbSNP
rs1328626072 128 dbSNP
rs1363271126 129 dbSNP
rs934170343 150 dbSNP
rs1023397838 153 dbSNP
rs1332942484 181 dbSNP
rs899979925 198 dbSNP
rs1218365239 210 dbSNP
rs575440828 210 dbSNP
rs1235123646 218 dbSNP
rs1216700188 224 dbSNP
rs1256284428 228 dbSNP
rs1179608170 231 dbSNP
rs547251066 234 dbSNP
rs1262098777 244 dbSNP
rs946944532 245 dbSNP
rs960428738 246 dbSNP
rs558566707 247 dbSNP
rs545322235 258 dbSNP
rs529181803 260 dbSNP
rs1278636123 262 dbSNP
rs767355067 264 dbSNP
rs76322558 283 dbSNP
rs1465675543 288 dbSNP
rs1311417768 300 dbSNP
rs1347684639 307 dbSNP
rs1447215230 318 dbSNP
rs1381838046 324 dbSNP
rs1334962342 329 dbSNP
rs553724748 332 dbSNP
rs1398149585 333 dbSNP
rs1277472310 337 dbSNP
rs1317389087 338 dbSNP
rs1219258457 346 dbSNP
rs982196468 351 dbSNP
rs969652455 359 dbSNP
rs1454718485 364 dbSNP
rs1247697285 369 dbSNP
rs1023456815 371 dbSNP
rs1192192548 403 dbSNP
rs994082202 418 dbSNP
rs1477863352 421 dbSNP
rs1158416196 437 dbSNP
rs962597844 438 dbSNP
rs973331177 441 dbSNP
rs1410762313 442 dbSNP
rs1016765933 443 dbSNP
rs1159838023 454 dbSNP
rs1417571116 455 dbSNP
rs761729143 459 dbSNP
rs1006731055 462 dbSNP
rs1341011443 467 dbSNP
rs1400715910 470 dbSNP
rs1272047915 473 dbSNP
rs1377023339 474 dbSNP
rs1241758768 475 dbSNP
rs561884086 476 dbSNP
rs889586897 479 dbSNP
rs1362051835 483 dbSNP
rs1214813867 484 dbSNP
rs1483998566 498 dbSNP
rs1285965780 499 dbSNP
rs1237720660 505 dbSNP
rs1218526895 509 dbSNP
rs1214413908 524 dbSNP
rs1444825880 528 dbSNP
rs1472172647 529 dbSNP
rs1050550442 549 dbSNP
rs1014758850 560 dbSNP
rs997989262 571 dbSNP
rs1386636715 572 dbSNP
rs1437629446 573 dbSNP
rs749747988 578 dbSNP
rs1004517056 582 dbSNP
rs901873259 584 dbSNP
rs1360901313 587 dbSNP
rs1421481811 588 dbSNP
rs1288056360 591 dbSNP
rs1357558612 592 dbSNP
rs1447306820 595 dbSNP
rs181927130 605 dbSNP
rs867476157 611 dbSNP
rs1238457163 617 dbSNP
rs1309043011 623 dbSNP
rs995925788 629 dbSNP
rs1207473757 630 dbSNP
rs1277058824 635 dbSNP
rs773962458 636 dbSNP
rs1044341334 640 dbSNP
rs574554028 646 dbSNP
rs770146673 667 dbSNP
rs1177588927 668 dbSNP
rs946828521 669 dbSNP
rs115903631 675 dbSNP
rs991952294 678 dbSNP
rs960731903 702 dbSNP
rs1052660199 709 dbSNP
rs1414004250 713 dbSNP
rs1334857263 715 dbSNP
rs1408358623 720 dbSNP
rs918293164 722 dbSNP
rs1378133042 723 dbSNP
rs538044595 724 dbSNP
rs1273614269 731 dbSNP
rs962317179 733 dbSNP
rs1220297062 751 dbSNP
rs1428699640 753 dbSNP
rs1315526989 757 dbSNP
rs1362602097 757 dbSNP
rs927970743 759 dbSNP
rs1016817863 762 dbSNP
rs1439344734 767 dbSNP
rs1196428577 773 dbSNP
rs948157348 784 dbSNP
rs1383943660 789 dbSNP
rs1165813688 797 dbSNP
rs1007194544 811 dbSNP
rs538992708 811 dbSNP
rs953926553 816 dbSNP
rs973217051 820 dbSNP
rs578026336 821 dbSNP
rs1484602783 826 dbSNP
rs552570346 827 dbSNP
rs901925480 843 dbSNP
rs539287966 846 dbSNP
rs1030089886 857 dbSNP
rs1217415427 858 dbSNP
rs1289541890 860 dbSNP
rs763842656 863 dbSNP
rs999540640 864 dbSNP
rs903832564 875 dbSNP
rs1207672896 876 dbSNP
rs1288925543 880 dbSNP
rs1451956464 882 dbSNP
rs1201523115 883 dbSNP
rs1260859571 889 dbSNP
rs1322156274 891 dbSNP
rs1192982353 893 dbSNP
rs574407629 897 dbSNP
rs1373695912 899 dbSNP
rs1044008354 901 dbSNP
rs948293112 914 dbSNP
rs916791175 915 dbSNP
rs1213101947 916 dbSNP
rs1390536874 927 dbSNP
rs1021334384 930 dbSNP
rs1011149684 939 dbSNP
rs1339033912 940 dbSNP
rs1057033694 946 dbSNP
rs74891052 952 dbSNP
rs1242232623 958 dbSNP
rs1052580093 961 dbSNP
rs1364215189 962 dbSNP
rs1224394794 966 dbSNP
rs1295848907 974 dbSNP
rs1487950424 975 dbSNP
rs1217211294 976 dbSNP
rs1262602768 981 dbSNP
rs1430367966 984 dbSNP
rs1458718763 985 dbSNP
rs918340601 987 dbSNP
rs1368046114 988 dbSNP
rs1445650951 990 dbSNP
rs999710433 993 dbSNP
rs1358995695 1001 dbSNP
rs906573625 1010 dbSNP
rs972426190 1017 dbSNP
rs3741619 1047 dbSNP
rs1393728539 1052 dbSNP
rs1193706427 1056 dbSNP
rs1479847063 1059 dbSNP
rs375026818 1069 dbSNP
rs1247688502 1072 dbSNP
rs1306860824 1072 dbSNP
rs576169573 1073 dbSNP
rs916573744 1074 dbSNP
rs1262357054 1082 dbSNP
rs1486890588 1083 dbSNP
rs778410372 1089 dbSNP
rs1255765528 1090 dbSNP
rs985421865 1092 dbSNP
rs1266659392 1093 dbSNP
rs1378924249 1098 dbSNP
rs1037690875 1103 dbSNP
rs10875907 1113 dbSNP
rs1488683877 1114 dbSNP
rs1464124746 1116 dbSNP
rs748558101 1140 dbSNP
rs1029535841 1145 dbSNP
rs1301809962 1145 dbSNP
rs976999872 1148 dbSNP
rs1406140280 1149 dbSNP
rs907811027 1154 dbSNP
rs983215405 1158 dbSNP
rs779180279 1159 dbSNP
rs1320216965 1160 dbSNP
rs550737635 1168 dbSNP
rs923137088 1173 dbSNP
rs1258986718 1180 dbSNP
rs974510073 1184 dbSNP
rs964846031 1186 dbSNP
rs1343778880 1188 dbSNP
rs999593271 1195 dbSNP
rs1236514889 1200 dbSNP
rs754654327 1202 dbSNP
rs1054442 1203 dbSNP
rs958245402 1214 dbSNP
rs1431992170 1216 dbSNP
rs1387784159 1217 dbSNP
rs1429452830 1218 dbSNP
rs1031263727 1220 dbSNP
rs1000060268 1222 dbSNP
rs906695946 1223 dbSNP
rs1365185844 1225 dbSNP
rs1386205742 1229 dbSNP
rs1012542806 1230 dbSNP
rs1283832736 1232 dbSNP
rs895391937 1232 dbSNP
rs1225386792 1233 dbSNP
rs1256424865 1234 dbSNP
rs1307184752 1235 dbSNP
rs1056682923 1239 dbSNP
rs190684787 1244 dbSNP
rs1487703758 1250 dbSNP
rs1438660095 1251 dbSNP
rs1191140759 1253 dbSNP
rs895254116 1254 dbSNP
rs1037638426 1259 dbSNP
rs1190811791 1264 dbSNP
rs565116553 1273 dbSNP
rs1467539110 1275 dbSNP
rs1410223367 1276 dbSNP
rs1172083130 1284 dbSNP
rs907759026 1291 dbSNP
rs1047634820 1293 dbSNP
rs186726986 1297 dbSNP
rs1367316893 1301 dbSNP
rs573060871 1308 dbSNP
rs968520262 1322 dbSNP
rs1171010411 1323 dbSNP
rs941100491 1325 dbSNP
rs1215442097 1326 dbSNP
rs975004435 1327 dbSNP
rs1375495117 1339 dbSNP
rs1200379723 1345 dbSNP
rs1433646596 1347 dbSNP
rs559234786 1350 dbSNP
rs1222158310 1367 dbSNP
rs1293163203 1367 dbSNP
rs1490996543 1367 dbSNP
rs1249763278 1369 dbSNP
rs1175229166 1371 dbSNP
rs1215047151 1374 dbSNP
rs1458960089 1391 dbSNP
rs757944034 1393 dbSNP
rs778583727 1398 dbSNP
rs1475447638 1411 dbSNP
rs1187914597 1412 dbSNP
rs909583536 1434 dbSNP
rs1423052001 1450 dbSNP
rs765989026 1451 dbSNP
rs1386827895 1465 dbSNP
rs1417861810 1498 dbSNP
rs1297495628 1501 dbSNP
rs1344702676 1502 dbSNP
rs1431491987 1525 dbSNP
rs1290884356 1530 dbSNP
rs1203344983 1533 dbSNP
rs1245486569 1540 dbSNP
rs1316214994 1545 dbSNP
rs1362034963 1553 dbSNP
rs755691460 1560 dbSNP
rs1257773192 1566 dbSNP
rs540189839 1574 dbSNP
rs932295854 1577 dbSNP
rs1447082065 1580 dbSNP
rs1217251715 1587 dbSNP
rs749890220 1588 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM4903829
Method / RBP HITS-CLIP / AGO
Cell line / Condition Human neurons / CTLTD_shCTL_a
Location of target site NM_015086 | 3UTR | AACUUGGCCACAUCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161238
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_015086 | 3UTR | UGAACUUGGCCACAUCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_015086 | 3UTR | GAACUUGGCCACAUCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_015086 | 3UTR | UGAACUUGGCCACAUCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_015086 | 3UTR | UGAACUUGGCCACAUCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_015086 | 3UTR | UGAACUUGGCCACAUCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_015086 | 3UTR | UGAACUUGGCCACAUCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000421952.2 | 3UTR | CCACAUCACUUCACCUCCCUGAGCCUCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
117 hsa-miR-4480 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT056040 MLLT10 MLLT10, histone lysine methyltransferase DOT1L cofactor 2 2
MIRT091259 FXR1 FMR1 autosomal homolog 1 2 4
MIRT117347 MAPRE2 microtubule associated protein RP/EB family member 2 2 2
MIRT234960 ZNF439 zinc finger protein 439 2 4
MIRT441356 ZNF75A zinc finger protein 75a 2 2
MIRT441426 STXBP2 syntaxin binding protein 2 2 2
MIRT441455 ZNF488 zinc finger protein 488 2 4
MIRT441524 ZBTB10 zinc finger and BTB domain containing 10 2 2
MIRT441576 EXOC5 exocyst complex component 5 2 2
MIRT441597 ABCB5 ATP binding cassette subfamily B member 5 2 6
MIRT441610 ATP13A4 ATPase 13A4 2 2
MIRT441698 CIT citron rho-interacting serine/threonine kinase 2 2
MIRT441714 FGF9 fibroblast growth factor 9 2 2
MIRT441784 MAPK8 mitogen-activated protein kinase 8 2 4
MIRT441795 EXOSC2 exosome component 2 2 2
MIRT441868 RNASEL ribonuclease L 2 2
MIRT441900 SLC9A8 solute carrier family 9 member A8 2 6
MIRT441919 FAM217B family with sequence similarity 217 member B 2 2
MIRT441928 C1orf109 chromosome 1 open reading frame 109 2 2
MIRT441938 RIMKLB ribosomal modification protein rimK like family member B 2 2
MIRT442157 DPY19L1 dpy-19 like C-mannosyltransferase 1 2 2
MIRT442172 AZF1 azoospermia factor 1 2 2
MIRT442208 IRS1 insulin receptor substrate 1 2 2
MIRT442237 DDX19A DEAD-box helicase 19A 2 2
MIRT442366 ZC3HAV1L zinc finger CCCH-type containing, antiviral 1 like 2 2
MIRT442572 SDC1 syndecan 1 2 2
MIRT442604 ZNF391 zinc finger protein 391 2 2
MIRT442609 MRC1 mannose receptor C-type 1 2 2
MIRT442647 POP4 POP4 homolog, ribonuclease P/MRP subunit 2 2
MIRT442658 OIP5 Opa interacting protein 5 2 6
MIRT442686 COX15 COX15, cytochrome c oxidase assembly homolog 2 2
MIRT442773 JAG1 jagged 1 2 2
MIRT442785 CHD8 chromodomain helicase DNA binding protein 8 2 2
MIRT442895 PLCB3 phospholipase C beta 3 2 2
MIRT442941 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT442959 SGCD sarcoglycan delta 2 2
MIRT442998 EDAR ectodysplasin A receptor 2 2
MIRT443017 C21orf91 chromosome 21 open reading frame 91 2 2
MIRT443064 CASP5 caspase 5 2 2
MIRT443069 ABLIM1 actin binding LIM protein 1 2 2
MIRT443208 VPS36 vacuolar protein sorting 36 homolog 2 2
MIRT443237 ANKRD26 ankyrin repeat domain 26 2 2
MIRT443253 A1CF APOBEC1 complementation factor 2 2
MIRT443329 JUN Jun proto-oncogene, AP-1 transcription factor subunit 2 2
MIRT443333 NRAS NRAS proto-oncogene, GTPase 2 2
MIRT443349 STX7 syntaxin 7 2 2
MIRT443452 CLIC5 chloride intracellular channel 5 2 2
MIRT443547 GPR35 G protein-coupled receptor 35 2 2
MIRT443616 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT443626 CPSF2 cleavage and polyadenylation specific factor 2 2 2
MIRT443730 ALPK3 alpha kinase 3 2 2
MIRT443786 ST13 ST13, Hsp70 interacting protein 2 2
MIRT443852 RGS6 regulator of G protein signaling 6 2 2
MIRT445483 KLF5 Kruppel like factor 5 2 2
MIRT471105 PHLDA2 pleckstrin homology like domain family A member 2 2 2
MIRT472329 NETO2 neuropilin and tolloid like 2 2 4
MIRT472391 NDRG3 NDRG family member 3 2 2
MIRT473522 MAX MYC associated factor X 2 2
MIRT473874 MAFK MAF bZIP transcription factor K 2 6
MIRT476021 GTF2A1 general transcription factor IIA subunit 1 2 2
MIRT478320 DDN dendrin 2 2
MIRT492049 TNFSF9 TNF superfamily member 9 2 2
MIRT494851 ANKRD24 ankyrin repeat domain 24 2 2
MIRT494991 TSSC1 EARP complex and GARP complex interacting protein 1 2 2
MIRT495034 RASSF2 Ras association domain family member 2 2 2
MIRT495111 NOL10 nucleolar protein 10 2 2
MIRT495113 TRADD TNFRSF1A associated via death domain 2 2
MIRT495131 METTL24 methyltransferase like 24 2 2
MIRT495147 STAC2 SH3 and cysteine rich domain 2 2 2
MIRT495297 NUP54 nucleoporin 54 2 2
MIRT495341 RTN2 reticulon 2 2 2
MIRT495347 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT496682 DUSP18 dual specificity phosphatase 18 2 2
MIRT496743 TGFBR1 transforming growth factor beta receptor 1 2 2
MIRT496841 KCNIP2 potassium voltage-gated channel interacting protein 2 2 2
MIRT496852 GPAM glycerol-3-phosphate acyltransferase, mitochondrial 2 2
MIRT496889 FOXP1 forkhead box P1 2 2
MIRT496922 CLMN calmin 2 2
MIRT496990 TMEM231 transmembrane protein 231 2 2
MIRT497002 SNAP25 synaptosome associated protein 25 2 2
MIRT497058 C6orf223 chromosome 6 open reading frame 223 2 2
MIRT500529 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 6
MIRT506048 PPP6C protein phosphatase 6 catalytic subunit 2 4
MIRT512163 CD164 CD164 molecule 2 6
MIRT527051 RDH13 retinol dehydrogenase 13 2 2
MIRT532282 TNFSF14 TNF superfamily member 14 2 2
MIRT534083 SPRY4 sprouty RTK signaling antagonist 4 2 2
MIRT534605 RNASEH1 ribonuclease H1 2 4
MIRT539509 ACSS3 acyl-CoA synthetase short chain family member 3 2 2
MIRT543069 ARID4B AT-rich interaction domain 4B 2 2
MIRT544233 CCBL2 kynurenine aminotransferase 3 2 2
MIRT544686 ZNF224 zinc finger protein 224 2 4
MIRT546269 TMEM30A transmembrane protein 30A 2 4
MIRT559069 C19orf47 chromosome 19 open reading frame 47 2 2
MIRT562768 RMI2 RecQ mediated genome instability 2 2 2
MIRT563974 HCFC1 host cell factor C1 2 2
MIRT564086 NSA2 NSA2, ribosome biogenesis homolog 2 2
MIRT564525 PDXP pyridoxal phosphatase 2 2
MIRT564613 ZNF703 zinc finger protein 703 2 2
MIRT566252 PTBP1 polypyrimidine tract binding protein 1 2 2
MIRT614420 ZNF440 zinc finger protein 440 2 2
MIRT618789 MTHFR methylenetetrahydrofolate reductase 2 2
MIRT619160 PPDPF pancreatic progenitor cell differentiation and proliferation factor 2 2
MIRT641778 ZDHHC7 zinc finger DHHC-type containing 7 2 4
MIRT653680 SLC25A36 solute carrier family 25 member 36 2 2
MIRT657861 GJD2 gap junction protein delta 2 2 2
MIRT660879 ADCYAP1R1 ADCYAP receptor type I 2 2
MIRT668781 DAAM1 dishevelled associated activator of morphogenesis 1 2 4
MIRT688559 DCAF16 DDB1 and CUL4 associated factor 16 2 2
MIRT695393 WDR41 WD repeat domain 41 2 2
MIRT698680 TCEA1 transcription elongation factor A1 2 2
MIRT700974 PDIA6 protein disulfide isomerase family A member 6 2 2
MIRT705055 C5orf15 chromosome 5 open reading frame 15 2 2
MIRT705864 AFF1 AF4/FMR2 family member 1 2 2
MIRT710586 CDCA4 cell division cycle associated 4 2 2
MIRT713904 IGF2R insulin like growth factor 2 receptor 2 2
MIRT717133 SKI SKI proto-oncogene 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4480 Cisplatin 5460033 NSC119875 approved sensitive cell line (CIS)
hsa-miR-4480 Cisplatin 5460033 NSC119875 approved resistant cell line (A549)

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