miRTarBase - #MIRT478522


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pre-miRNA Information
pre-miRNA hsa-mir-1343   
Genomic Coordinates chr11: 34941837 - 34941920
Description Homo sapiens miR-1343 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-1343-3p
Sequence 52| CUCCUGGGGCCCGCACUCUCGC |73
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN30640426 13 COSMIC
COSN32131883 18 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1030024806 10 dbSNP
rs568333985 11 dbSNP
rs1335261302 13 dbSNP
rs1228966720 17 dbSNP
rs950497159 20 dbSNP
rs748356067 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CTNS   
Synonyms CTNS-LSB, PQLC4
Description cystinosin, lysosomal cystine transporter
Transcript NM_004937   
Other Transcripts NM_001031681   
Expression
Putative miRNA Targets on CTNS
3'UTR of CTNS
(miRNA target sites are highlighted)		 
>CTNS|NM_004937|3'UTR
   1 CACCCAGGGACCCAGTGTACCCAGCCTCTGGCCTCGTGCCCTGCTGGGGAAGGCCTCACCCAGCGAAGGCCGGAGAAGCG
  81 GTTGGGCCCTGGCACACAGGGCTGGCTCAGTGTGCGGACAGAGGAGACCACTCTGCTCCTGGGGCCAGAGGCCATTCAAT
 161 AGCCTGCCTTCGTCCGGGCCCCTCCTGGGCCTCCCCGGCCAGGCACGTGGCACCGTCGCCTTGACACCGCCATCTCTTTT
 241 CTTTAAGGCTTCAGGCAGCGCGCACAGGCTCTGGCAGCCGTCTCAGGCAGGACTGGGCACCAAGCTTGCAGCCGAAGGCC
 321 TTGCCCCAAACTACCAGCGTTTCTGCAAGCAGCTTGAAGGGCTGACCTTGCAGCCGGGTGAGCCAAGGGCACTTTGCTGC
 401 CACCGCTGCATTCCCAGAGATCAAGCAGCCCGGTGCCGTGGCCAGTGAACTCAGAGGTGCTGGTGGACGGGCTAGGACTT
 481 TGGGGTTAGGCCATGGGGCTCTTTCTCTGAAGGCCACTTTCCTGACGTACTCTCTGTACATAACTCAGCGTCCGTGACTG
 561 CAGTAACAGCCAGCCCTACCCAGAGTATTTCTGAGCCATGAGGGGCCCACCAGATTGGTTCTGAATTGGATTCATGCCCA
 641 GCGCATTAGCATAGTAACTCCTTTCAGATTTTTTGGAGGGACGTTTGGAAGTGGCTTACTCTCTTCTGCCCTCTCTCCTA
 721 CCTCCACCTTCTCAGATTAGCCCCATCTGAGCACATCCAGCTGCTCCTTACCCAGCATCTGGAGTACAGGACATAGCTCT
 801 CTCCTGCTACCAGTCTGTGCCTTAGAGGTCTGTTAGGCCTGCCAAACGGCGACCAGCTCCCCTGGAGCGAGGGCAGGCCC
 881 CTTCCCTCTCTTTCCCCAGACACCTACTTGAGACTCACCAATTTCTGGCCTGTTCAGGAGCCTCAGATAAGTATTTGTAC
 961 TTGAGACCACCTCACACAATCTGTATGGGCCCAACCCTGATCTCAAACCTCCTTCCCTCTGCCCAAAGCTGTCCTTCCTA
1041 TGGCAGGAGGGGTGGGGGTCCCAGGACGTGCCTCATACATGACTTGAGCTTGTCAGTCCACTGAGTTTCCTTCTACGAGA
1121 TCAACGCGAGGGGCCTGTATCTTGAATTAAAACCTACTCGCTTCCTTTCTGCACTCTGTGTGCTCGATACAGAAGGCAGG
1201 TGTGCTGGCCTTCAGAGCCAGGTGCCCTGCTCCCCTCGTGTAAGGAAGCGCATAAGGTTGTGAAGGTCACTGACCCGAGA
1281 GCGCTGCGTGCTGACCCCACACTTCACTGGGGAGCCCTCTTGGGTAGCGCGAGACGCCTACCCGCCCAGGGCCAGGTCAG
1361 TCTCCCAGGCTCCGTGTCTTCACGGTTACCAGGGCACGCCACTCAATCTGGATGTGAGCCGGGGTGGATGAGGTTCTGAA
1441 GGGCACACCAGCACTGGGAGCGGGGGCAGTGGGGGTCTTATTCTCCAGACGCTTCCTCTATCTAGTTGTAACAAACGTCA
1521 AAGAATGTCAGGTCTTGTTTCTGCAGAGCAGACTTTGGCCTGACGGGGTCCACAGACCTGTTTCACTTGCAACACCCAGT
1601 AAATGTGTTACTGGGTGCCCTACTTTAAAAATCAGAGATTTCAAATGATTGACTTTTCCGGCTGAGTGCGGTGGCTCACG
1681 CCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGATGGATCACCTGACATCAGGAGTTCGAGACCAGCCTAGCCAACATT
1761 GCAAAACCCCATCTCTACTAAAGATACAAAAATTAGCTGGGCATGGTGGCGGGCACCTGTAATCCCAGCTACTTGGTTGG
1841 CTGAGGCAGGAGAATTACTTGAACCCAGGAGGCGGAGGTTGCAGTGAGCGAAGATCACGCCATTGCACTCCAGCCTGGGC
1921 AACAAGAACGAAACTCCATCTCAAAAAAAAAAAAAAATTATTGACTTTTCTTTAAAATCTGATTTGGCAGTGCTAGGTAG
2001 GTCCAGGAGTGCTAACACCTTCCCAGAGGTGGTACGCAGGTAGTCAGGTGCTCTCTGACTCACCCCCATCTGGCCAGATC
2081 ACGGCCCCCAGCAACACGTGGGGTTGTGTCCCTCGCTGGGATACACGGAGTGCCCTTATAGGCAGGGAGTCTTATAGGCA
2161 GGGGTCTCTCCCAGGCACCTCTGGGTGTCCCTACGGCCCCTCCCAGGTGGGAGCTGAGGCTAGGTTGCAAAAAGGAGGTT
2241 GGGAGCAAGTAGGGGCTTCACAGTAACACCCAAGAAAGCACACGCACCCCAGGGTCCCACCCCAGTGCTCCCAGACACTC
2321 CCACAGATGTGGTTCTGGTCAGGCGCAGTGCAGCTGCTGCGGCTCCACCAGCCCCGGGCTTTCAGGCAGGTGGGCCTGGG
2401 AGTAGTTGAGCTTTGTCCCAGAACAGTGGGGGATGGGGCCATCATTAAAACCACAGCTCTGGCCCCAATATCCCACCGCC
2481 ACCCCCACCCCGATATCCCAGCCCATGCCTCAGCAAAGCCCCCTGTGAATTCCAGCATTTTTATTGAGCGCACCACATCG
2561 GGGAGGGGCGGCAGTGGTTTCCACGGTAACCAAAGTAAGGCTTGTGCACTTGCTGAGCTTCCAGATGCGAATTAGTAAAA
2641 GCTAAATTCAAAAGTAGAATGGGCATCTCCAAAGAGTACGATAAAAACATTTTGTATCAAACTTGTGATTAAAAAAATAC
2721 AAAAGTTAAACCCA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cgCU-CUCACGCCCGGGGUCCUc 5'
            || |:||| |||:||||||| 
Target 5' agGAGGGGTGGGGGTCCCAGGAc 3'
 1045 - 1067 176.00 -32.20
2 
miRNA  3' cgCUCUCA--CGCCCGGGGUCCUc 5'
            |||| |   : |  ||||||| 
Target 5' agGAGAATTACTTGAACCCAGGAg 3'
 1848 - 1871 146.00 -19.07
3 
miRNA  3' cgCUCUCACG--CC--CGGGGUCCUc 5'
            |: |||||  ||  | :|||||| 
Target 5' ttGGCAGTGCTAGGTAGGTCCAGGAg 3'
 1984 - 2009 144.00 -24.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
322847 17 ClinVar
322848 56 ClinVar
891432 101 ClinVar
322849 130 ClinVar
891684 177 ClinVar
891685 181 ClinVar
891686 207 ClinVar
1199332 260 ClinVar
322850 263 ClinVar
322851 281 ClinVar
257152 301 ClinVar
1049189 314 ClinVar
322852 406 ClinVar
322853 411 ClinVar
322854 422 ClinVar
322855 432 ClinVar
889952 470 ClinVar
322856 528 ClinVar
891510 551 ClinVar
322857 556 ClinVar
322858 573 ClinVar
322859 578 ClinVar
891757 600 ClinVar
322860 628 ClinVar
322861 632 ClinVar
322862 655 ClinVar
889331 658 ClinVar
322863 716 ClinVar
322864 738 ClinVar
322865 739 ClinVar
890013 836 ClinVar
322866 848 ClinVar
322867 852 ClinVar
322868 872 ClinVar
322869 943 ClinVar
891570 984 ClinVar
322870 1025 ClinVar
322871 1025 ClinVar
322872 1026 ClinVar
322873 1031 ClinVar
322874 1033 ClinVar
322875 1046 ClinVar
322876 1046 ClinVar
322877 1054 ClinVar
322878 1117 ClinVar
322879 1118 ClinVar
322880 1126 ClinVar
889385 1129 ClinVar
322881 1153 ClinVar
322882 1166 ClinVar
322883 1174 ClinVar
322884 1175 ClinVar
322885 1177 ClinVar
322886 1207 ClinVar
322887 1250 ClinVar
890074 1251 ClinVar
890075 1332 ClinVar
322888 1337 ClinVar
322889 1367 ClinVar
322890 1384 ClinVar
322891 1398 ClinVar
322892 1441 ClinVar
322893 1473 ClinVar
322894 1502 ClinVar
889438 1503 ClinVar
322895 1579 ClinVar
322896 1596 ClinVar
322897 1634 ClinVar
890123 1660 ClinVar
322898 1666 ClinVar
322899 1670 ClinVar
322900 1681 ClinVar
890704 1709 ClinVar
322901 1867 ClinVar
322902 1875 ClinVar
890705 1890 ClinVar
322903 1900 ClinVar
322904 1943 ClinVar
322905 1943 ClinVar
322906 1943 ClinVar
891950 2013 ClinVar
891951 2021 ClinVar
322907 2037 ClinVar
889511 2060 ClinVar
889512 2083 ClinVar
322908 2116 ClinVar
322909 2120 ClinVar
322910 2128 ClinVar
322911 2133 ClinVar
890173 2140 ClinVar
322912 2196 ClinVar
890755 2244 ClinVar
322913 2307 ClinVar
890756 2378 ClinVar
322914 2383 ClinVar
322915 2478 ClinVar
322916 2493 ClinVar
322917 2528 ClinVar
322918 2547 ClinVar
322919 2551 ClinVar
889571 2569 ClinVar
322920 2570 ClinVar
322921 2585 ClinVar
322922 2594 ClinVar
322923 2629 ClinVar
322924 2663 ClinVar
322925 2718 ClinVar
COSN30447667 3 COSMIC
COSN30447688 4 COSMIC
COSN30106245 14 COSMIC
COSN30552245 61 COSMIC
COSN31581193 65 COSMIC
COSN30117944 66 COSMIC
COSN26972348 69 COSMIC
COSN31500400 79 COSMIC
COSN31610472 100 COSMIC
COSN30502786 101 COSMIC
COSN26972347 102 COSMIC
COSN30529897 109 COSMIC
COSN26972346 117 COSMIC
COSN26972349 117 COSMIC
COSN13715519 139 COSMIC
COSN30109294 141 COSMIC
COSN31510934 142 COSMIC
COSN30545431 154 COSMIC
COSN31564242 159 COSMIC
COSN30100789 173 COSMIC
COSN26972344 175 COSMIC
COSN30131572 178 COSMIC
COSN20078796 190 COSMIC
COSN26972350 197 COSMIC
COSN29541234 212 COSMIC
COSN31588471 215 COSMIC
COSN30154448 218 COSMIC
COSN30140105 219 COSMIC
COSN26972343 228 COSMIC
COSN26972342 229 COSMIC
COSN31492262 229 COSMIC
COSN31492265 230 COSMIC
COSM9064082 259 COSMIC
COSM8553586 260 COSMIC
COSM978281 262 COSMIC
COSM3183240 263 COSMIC
COSM5035628 278 COSMIC
COSM3721369 301 COSMIC
COSM8993409 308 COSMIC
COSM6637663 313 COSMIC
COSM9711652 319 COSMIC
COSM8031467 328 COSMIC
COSM7088791 332 COSMIC
COSM8248981 333 COSMIC
COSM6344515 350 COSMIC
COSM7616585 353 COSMIC
COSM6637664 366 COSMIC
COSN25094619 406 COSMIC
COSN26730544 411 COSMIC
COSN30104781 446 COSMIC
COSN31587747 451 COSMIC
COSN6103185 548 COSMIC
COSN31481261 559 COSMIC
COSN28813348 716 COSMIC
COSN28681534 738 COSMIC
COSN30544193 761 COSMIC
COSN26554877 785 COSMIC
COSN20113267 1034 COSMIC
COSN20113268 1053 COSMIC
COSN32063094 1054 COSMIC
COSN27161796 2703 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs367692229 1 dbSNP
rs1288637018 10 dbSNP
rs757412668 13 dbSNP
rs201198798 17 dbSNP
rs750693760 18 dbSNP
rs1279139434 19 dbSNP
rs1355089358 20 dbSNP
rs758741172 22 dbSNP
rs895251619 23 dbSNP
rs781007812 25 dbSNP
rs949171456 27 dbSNP
rs1323372298 30 dbSNP
rs1315540590 31 dbSNP
rs747960379 32 dbSNP
rs371518570 34 dbSNP
rs777585405 36 dbSNP
rs372088223 37 dbSNP
rs889174914 40 dbSNP
rs1320319959 43 dbSNP
rs770460020 44 dbSNP
rs1384450694 48 dbSNP
rs1157793608 54 dbSNP
rs751680506 56 dbSNP
rs1183421232 62 dbSNP
rs1472080151 65 dbSNP
rs886338252 66 dbSNP
rs1019086115 72 dbSNP
rs1426337434 73 dbSNP
rs903350060 80 dbSNP
rs138168839 81 dbSNP
rs1349016497 82 dbSNP
rs560735690 90 dbSNP
rs1016335477 91 dbSNP
rs1361217532 94 dbSNP
rs898797849 96 dbSNP
rs1442288143 100 dbSNP
rs996245701 104 dbSNP
rs1376130274 116 dbSNP
rs1376821016 116 dbSNP
rs1033252188 118 dbSNP
rs746209035 130 dbSNP
rs1296491859 133 dbSNP
rs1309201411 138 dbSNP
rs1366474790 142 dbSNP
rs1164470313 155 dbSNP
rs1360543581 160 dbSNP
rs202221738 161 dbSNP
rs991540823 164 dbSNP
rs954472477 168 dbSNP
rs1289857833 172 dbSNP
rs981157553 173 dbSNP
rs908338144 175 dbSNP
rs532875024 176 dbSNP
rs200021713 177 dbSNP
rs1269178801 180 dbSNP
rs552754402 181 dbSNP
rs1177875147 190 dbSNP
rs1243684985 196 dbSNP
rs973906074 197 dbSNP
rs745499655 198 dbSNP
rs1317277457 199 dbSNP
rs771666360 200 dbSNP
rs1415400212 202 dbSNP
rs1424902999 204 dbSNP
rs367951710 207 dbSNP
rs760956872 208 dbSNP
rs764591731 212 dbSNP
rs368625442 214 dbSNP
rs372075822 215 dbSNP
rs750569125 216 dbSNP
rs758641448 218 dbSNP
rs766566995 219 dbSNP
rs752479826 223 dbSNP
rs746630817 227 dbSNP
rs755866151 228 dbSNP
rs777728521 229 dbSNP
rs757236875 230 dbSNP
rs1311234175 231 dbSNP
rs778366372 234 dbSNP
rs1238674302 235 dbSNP
rs776692628 237 dbSNP
rs761471459 238 dbSNP