miRTarBase - #MIRT478575


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pre-miRNA Information
pre-miRNA hsa-mir-4259   
Genomic Coordinates chr1: 159899979 - 159900079
Description Homo sapiens miR-4259 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4259
Sequence 70| CAGUUGGGUCUAGGGGUCAGGA |91
Evidence Experimental
Experiments SOLiD
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1237551241 4 dbSNP
rs772339482 8 dbSNP
rs1314022637 15 dbSNP
rs1414601728 19 dbSNP
rs746067692 20 dbSNP
rs779101228 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CTNND1   
Synonyms CAS, CTNND, P120CAS, P120CTN, p120, p120(CAS), p120(CTN)
Description catenin delta 1
Transcript NM_001085458   
Other Transcripts NM_001085459 , NM_001085460 , NM_001085461 , NM_001085462 , NM_001085463 , NM_001085464 , NM_001085465 , NM_001085466 , NM_001085467 , NM_001085468 , NM_001085469 , NM_001331   
Expression
Putative miRNA Targets on CTNND1
3'UTR of CTNND1
(miRNA target sites are highlighted)		 
>CTNND1|NM_001085458|3'UTR
   1 CACCACTATCTCCGTTCCATCTGGGCTTATATGTACTTTTATTTTTTGGTGGTGAAATTGACTGATGATTTTCCTTTTTC
  81 TTCGCTGGACTATTGTGCCAACTGCCAGGCTGCCTCCTGCCCTTACAGCCCTAAGTGGCTGCCTTCTTTCCATCAACTCC
 161 CAACTTCTTCCTGTGAAGTTTAATTGTCTCAACGCCTCCCCCTCCCCCATTCCCTCCATTTTTCTCCCAAGAAACCTGAC
 241 TCAATTATTTGCATATTTTGAGAAACTGCTGCAGATTAGTTCTTTTTGCCAGTTTTCCCTGGAACTCCTGGCCTTTTGTG
 321 GAGGGGAGGGATGGAGAGAATAGGAATCTTCACTAGAAGCCGTGGGAAGAATTGGAAGTTACATGCTGTATATGCAATGT
 401 CCAGCAGTCTGATAAACTGACGATTCTTAATCAAGATTTTTTTCCTGATGGGGAAGGGACTTTTATTTTCTTTTAGAGAG
 481 GGGAAAGTGTGAGCTCTTCCCTTATTCCTAATGGCTATTTTTGAAGCAAAGAAGGCCAGCAACATTGGCACATGCCACCT
 561 GGCAAAGGACCCTTGAGTAAGTGAAGGTCTCCTAAAACTGGGATTAAGAAACCTTGCTCTCCTCATCTCCAAGGCAGGGA
 641 CCATCAAGAACCTACAGACTCCATCTCTTCTGCAAGCCTCATGCCAACCCTGGGCTATTGCTGCTGCCCCTTAAACACAG
 721 GCTGTCCTTAACCCACCTCTCCTGCCCTGTGATATGTCTGCTGAGTTGGCCTGGCCATTTCCAAGAGGCTGTAGAAAGGG
 801 GAGAATGTCAAGGAAGACTTTTGGTAGAGAAGGAGCAGAAAGATGTGTTTTTGGGAAGAAGAAGACCTCTAGGAGGAGCT
 881 AGTAGGAATGTACATGAAGCAATTAGTCTGAAACTGGCTTCCCCACTCCCCCGTTTCTCCTTTTCCTATCCTTATAGGCC
 961 TGTCCCTTGCCTCTGCCCTGGATTGGTTGGCAAACTAAAGGACTTGATGTACATAACTCCTGTCCCTTTTCCCTTACAAG
1041 GTGGGGATTGCCCCTGGCTTTGCCTCTTCTTTGTGCCTTTGGCCTGGGGTGCATCTCCTCCCGCCCTTCCATGTGCCTTT
1121 CTTTGCCTCTGCAGTCTCATTTCTCATAATTTTGCAAATTATATTTTGTTGCTTTCTTACCTACTATTGGCCCTAAATAG
1201 CAGAAAGAAGAGAAGTGACCGAGAGAACCTCAGATTCTTCATTGAGGATTGGTATAGCCATGATTTCAGTCATAGCAAGC
1281 TTTTGCTCAACAGCATATGGGTGGGATTTTGCAAAAATCCTATTCTGATGAATCTCAAAGTAAGGCTGGTAAGAGAAGTG
1361 AGTGGTGTGACTCTTACTCCTTAGGTGCCCAGAATTTACCATCATCTCTGAAGGAGTTACAGGGAAGTGGTCTCCCCAAT
1441 TCTCCCCTCCCTCCAGTATTGCCCCCTCTCACTTTAGCATATATTAATTAGCAGGTTGGGCTAGAGAAATCAGCTGCTAT
1521 GCGGGTTGATTATTATTATTATTTCTAATCCTTTTCCTTATTTGCCTTCTACTCCCCTTAATCTAATCTAAAAGCTCTGT
1601 TCCATGCAACTGGAGTTCCTTATCCCTCTCTTCCCCTTCCCTTATATATTGAGGCTATGGGGTAGGAGAAAAGTGCACAA
1681 CCCACCACCCCCTTTACTCGTGCATTAAAATTTCTTATTTACCCTTTTCCCCCTTCCCATTTCTTCCCACTTTCATCTAC
1761 CTTTTCTGGCAAAAAGGAGCCTTTTGCTCTCTGTGACCCTAAGAGCACACTGCACAGGGAAAATTGCCCCATCCAGACCT
1841 GGCTCCACTCTTGATCTCTCTTGTCCTCTTCTGCTCTTTTCCTGGTGCTCTTTTTTCTCGGTGGGGTGTGGGTAATAGAA
1921 CAGCCGTGGGCTTTTGGGGACCTTTAACTTTTTTTTCTCTCTTTTGTTTATAAAAAACACTAAACATTCAATTCCAGAGA
2001 ACCAAAAATCCCACCTTCCCACCGAACACTACTAAGGGGCTTGTGTTCTGCTCCATACCTTTTCTCTTTTCTTTCTGTCT
2081 TGTTAATGCTTTTAAAAACAAATGAGTTTTTTATATAAATAAAGTTTTTAAAGTGTGTATGTGGGGGGTCTGTGTCATTT
2161 CTTCACTTCAAGCTGTTATTTCTTCCCTGCTTTGCATCTTTGTTACTTCCTTATGTATCAGTGTCCTTTCCAGAGCAACC
2241 AGAAGGAGGTTATACCAGGATTTATTTTGAGCTCAGCCCCAACTCTTTATCAAGCAACATTCTTGTTAACTATATGTGAA
2321 ACATTTTTTCTTCTGAAGATTCTTAAAAATTGAATGTGGCTGAAGTTGAACATGGGAGCTTATTGCTAATTTAGAGATAG
2401 GAAACTGAAGCATAAAGAATTAATGACTTACTTTAATTACTGGAATTCTTCTGCAACATTTGACAAAACTAACCTTGAAT
2481 AAGGCCCACTGTAATACGTAGCTCTCTTAAATATAACACTTAGGACTAGAAGATTAGAAACTACCAATCCCAACTACGTA
2561 ATAGGAAAATGTAGGATCAAAAGGCCCATGTATATAAGTACTGACCACTGGGCCATAATGTTGCTTCTCAGGCTATATGC
2641 AGTCCTTTAGTCAGAAGTCAATAGGCCTATTTATTAATATTTTACAGACCATATTACCTGGATTACCAGGGACTATCTTT
2721 GCTGCAGAGATCAAGGGTTAAGATCTATGGGAAGATACTTATTTTTCTGAGGTCCTTATGTCCTGTCATATAATTAAAGA
2801 CTCAAGAGAATTTATGTGAAATGCTTTCTGTATGCCCAAATCTTTAGATTAAAATTATATAGCTGCTCCTGAAAAAAAAA
2881 AAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' agGACUGGGGAUCUGGGUUGAc 5'
            :||| |:| || ||||||| 
Target 5' ttTTGAGCTC-AGCCCCAACTc 3'
 2265 - 2285 163.00 -19.20
2 
miRNA  3' aggacUGGGGAUCUGGGUUGAc 5'
               ||: | |  ||||||| 
Target 5' tagaaACTACCAATCCCAACTa 3'
 2535 - 2556 149.00 -12.60
3 
miRNA  3' agGACUGG-GGAUCUGGGUUGAc 5'
            ||  || :| |  ||||||| 
Target 5' ttCTTTCCATCAACTCCCAACTt 3'
 144 - 166 148.00 -13.52
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN23023129 13 COSMIC
COSN13332431 14 COSMIC
COSN30104033 26 COSMIC
COSN20698183 32 COSMIC
COSN31595880 40 COSMIC
COSN30513117 44 COSMIC
COSN30107046 52 COSMIC
COSN28690201 81 COSMIC
COSN30170711 147 COSMIC
COSN30516392 155 COSMIC
COSN507801 194 COSMIC
COSN30162835 205 COSMIC
COSN30160079 217 COSMIC
COSN31578268 263 COSMIC
COSN28758009 308 COSMIC
COSN28757712 309 COSMIC
COSN32056479 363 COSMIC
COSN31535368 379 COSMIC
COSN7014808 411 COSMIC
COSN30175605 444 COSMIC
COSN31522312 679 COSMIC
COSN20574025 719 COSMIC
COSN31483804 743 COSMIC
COSN26640999 894 COSMIC
COSN8281950 1074 COSMIC
COSN24303668 1381 COSMIC
COSN20092350 1401 COSMIC
COSN1538783 1420 COSMIC
COSN31533943 1452 COSMIC
COSN30540763 1471 COSMIC
COSN28646289 1502 COSMIC
COSN15662316 1558 COSMIC
COSN31483211 1579 COSMIC
COSN8685258 1687 COSMIC
COSN31580028 1714 COSMIC
COSN30177284 1767 COSMIC
COSN30164387 1792 COSMIC
COSN31482334 1797 COSMIC
COSN30172393 1882 COSMIC
COSN28705044 1883 COSMIC
COSN7014809 2005 COSMIC
COSN22614782 2318 COSMIC
COSN29750675 2551 COSMIC
COSN27756350 2768 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs765263826 4 dbSNP
rs750319940 6 dbSNP
rs1327632452 11 dbSNP
rs757867202 14 dbSNP
rs779575280 15 dbSNP
rs11570226 22 dbSNP
rs1445449924 28 dbSNP
rs754635759 29 dbSNP
rs11570227 32 dbSNP
rs1278794637 34 dbSNP
rs1490132091 36 dbSNP
rs539941825 40 dbSNP
rs774849647 49 dbSNP
rs746328613 50 dbSNP
rs1329204636 59 dbSNP
rs1276911141 64 dbSNP
rs910534533 66 dbSNP
rs1325445904 69 dbSNP
rs1378635754 74 dbSNP
rs1231501476 81 dbSNP
rs1401295834 84 dbSNP
rs374037566 85 dbSNP
rs777671880 86 dbSNP
rs1435197705 90 dbSNP
rs1427213619 107 dbSNP
rs966455984 110 dbSNP
rs1474985494 121 dbSNP
rs976160394 141 dbSNP
rs1194723433 144 dbSNP
rs1489308395 157 dbSNP
rs557830271 161 dbSNP
rs1235250094 164 dbSNP
rs566866056 168 dbSNP
rs1210267519 174 dbSNP
rs919339299 180 dbSNP
rs929447586 182 dbSNP
rs1213144474 189 dbSNP
rs984916982 194 dbSNP
rs534181698 195 dbSNP
rs1448167207 198 dbSNP
rs527340024 198 dbSNP
rs909414635 198 dbSNP
rs1044640823 203 dbSNP
rs904821407 205 dbSNP
rs746750419 209 dbSNP
rs1172556412 210 dbSNP
rs1420044710 210 dbSNP
rs1056170645 213 dbSNP
rs11229141 215 dbSNP
rs186461637 220 dbSNP
rs1187260410 221 dbSNP
rs1193125346 224 dbSNP
rs1483642056 230 dbSNP
rs1253645492 231 dbSNP
rs1471891512 242 dbSNP
rs892200743 245 dbSNP
rs1203118872 252 dbSNP