miRTarBase - #MIRT478862


—
pre-miRNA Information
pre-miRNA hsa-mir-4419b   
Genomic Coordinates chr12: 128244506 - 128244573
Description Homo sapiens miR-4419b stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4419b
Sequence 42| GAGGCUGAAGGAAGAUGG |59
Evidence Experimental
Experiments Illumina
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CRISPLD2   
Synonyms CRISP11, LCRISP2, LGL1
Description cysteine rich secretory protein LCCL domain containing 2
Transcript NM_031476   
Expression
Putative miRNA Targets on CRISPLD2
3'UTR of CRISPLD2
(miRNA target sites are highlighted)		 
>CRISPLD2|NM_031476|3'UTR
   1 ATTTCCAGCACCAGGGGAGAAGGGGCGTCTTCAGGAGGGCTTCGGGGTTTTGCTTTTATTTTTATTTTGTCATTGCGGGG
  81 TATATGGAGAGTCAGGAAACTTCCTTTGACTGATGTTCAGTGTCCATCACTTTGTGGCCTGTGGGTGAGGTGACATCTCA
 161 TCCCCTCACTGAAGCAACAGCATCCCAAGGTGCTCAGCCGGACTCCCTGGTGCCTGATCCTGCTGGGGCCTGGGGGTCTC
 241 CATCTGGACGTCCTCTCTCCTTTAGAGATCTGAGCTGTCTCTTAAAGGGGACAGTTGCCCAAAATGTTCCTTGCTATGTG
 321 TTCTTCTGTTGGTGGAGGAAGTTGATTTCAACCTCCCTGCCAAAAGAACAAACCATTTGAAGCTCACAATTGTGAAGCAT
 401 TCACGGCGTCGGAAGAGGCCTTTTGAGCAAGCGCCAATGAGTTTCAGGAATGAAGTAGAAGGTAGTTATTTAAAAATAAA
 481 AAACACAGTCCGTCCCTACCAATAGAGGAAAATGGTTTTAATGTTTGCTGGTCAGACAGACAAATGGGCTAGAGTAAGAG
 561 GGCTGCGGGTATGAGAGACCCCGGCTCCGCCCTGGCACGTGTCCTTGCTGGCGGCCCGCCACAGGCCCCCTTCAATGGCC
 641 GCATTCAGGATGGCTCTATACACAGCAGTGCTGGTTTATGTAGAGTTCAGCAGTCACTTCAGAGATGTATCTTGTCTTTG
 721 TCAGGCCCTTCGTCTTCATGGCCCACCTGTTTTCTGCCGTGACCTTTGGTCCCATTGAGGACTAAGGATCGGGACCCTTT
 801 CTTTACCCCCTACCCGTTGTGGCTCCCACCCTGCCTCGGACTGGTTTACGTGTCCTGGTTCACACCCAGGACTTTTCTTT
 881 GCAAGCGAACCTGTTTGAAGCCCAAGTCTTAACTCCTGGTCTCGTAAGGTTCCACTGAGACGAGATGTCTGAGAACAACC
 961 AAAGAAGGCCTGCTCTTTGCTGCTTTTAAAAAATGACAATTAAATGTGCAGATTCCCCACGCACCCGATGACCTATTTTT
1041 TCAGCCGTGGGAGGAATGGAGTCTTTGGTACATTCCTCACCGAGGTTAGCAGCTCAGTTTGTGGTTATGAAACCGTCTGT
1121 GGCCTCATGACAGCGAGAGATGGGAATACACTAGAAGGATCTCTTTTCCTGTTTTCGTGAAACGACTCTTGCCAAACGTT
1201 CCCGAGGCGCCAAGGAGTGTAGTACACCCTGGCTGCCATCACTCTATAAAAGTGCTTCATGAGCCCAGACCAAAAGCCCA
1281 CAGTGAAATGAAGTACCCTTTTGTAAATAGCATTTTTTTGCAGAAGGTGAAAATTCCACTCTCTACCACCGGGCCAGCCA
1361 ATAGATCACTTTGGTGAATGCTAGTTTCAAATTTGATTCAAAATATTTCTTAGGTGAAAGAACTAGCAGAAAGTCAAAAA
1441 CTAAGATACTGTAGACTGGACAAGAAATTCTACCTGGGCACCTAGGTGATGCCTTCTTTCTTTGATTGCCTTTCTAATAA
1521 ATGCAGAATCTGAAGGTAAATAGGTTTAAAACAAAACAAAAACCCACCCCTTTAAGGAGTTGGTAAAAAGCAGTTCAACT
1601 CTTAGCTTGACTGAGCTAAAATTCACAGGACTACGTGCTTTGTGCATTGTAGTCTAGTCGTAATTCATAGGTACTGACTC
1681 CTCAGCCCCAAATGTCGGAGAGGAAGAATTCGGTCAGCCTGTCAGGTCGTGAGTCCAGTTACCACCAAACATCTGGGAAA
1761 CTTCTGGGTGCTGGGTGCTCTGCTGCTGGACTTTTGTGGCTGTGTCTGTGTCTGCAAGATAAATTAGATCGCCCTGTGGG
1841 GTTTGCAGAATTAGTGAAGGGTCCAGGACGATCCCAGTGGGCTCGCTTCCAAAGCATCCCACTCAAGGGAGACTTGAAAC
1921 TTCCAGTGTGAGTTGACCCCATCATTTAAAAATAAAGTCCCCGGGTTCCTTAATGCCTCCTTCACTGGGCCTTCCTAGCA
2001 GGATAGAAAGTCCTTGCCCAGAGCAGGACCTGGCTGTCTTTTTTTTTTTTTTTTTTTTTTTCCCGAGACCAAGTTTCACT
2081 CTGTTGCCCAAGGTAGAGTGCAGTGGCGTGATCTCTGCTCATTGCAACTGCCGCCTCCCGGGTTCAAGCAATTCTCATGC
2161 ATCAGCCTCCCAAGTACCTGGGACTACAGGCGTGAGCTACCATGCCCGGCTAATTTTTGTATTTTTAGTAGAGATGGGGT
2241 TTCATTATGTTGGCCAGGCTGGTCTCGAACTCCTTACCTCAGGTGATCCACCCACCTTGGCCTCCCGAAGTGCTGGGATT
2321 ACAGGCATGAGCCACTGCGCCCGGCCATGGACCTGGCTGTCTTTATCATCCCCACAAACATTTTGAAACTGGAATATTTG
2401 TCTTCAGAAAATGGAAACAAGACTATAAATGATAAGCCCTGTCCCTAGCACCACCTCTCCTGTGTGTGGAATAGAGGCCC
2481 CTCGTGCTACCAACACTTACCCTGTGTTTAAAAAGATCTTGTACCAAGCCAACGGCGTTCCTGGCTCTCCTGCCCACAGG
2561 ATGAACATTTTCGGCTTCCTTAGGAGTTTTGCCCTACCGTATTCCAAAGCGTGTGCTGGTTTCTCATATTGTCTGTAGGC
2641 TCACTCAGCCCGCAGTTTATGTGTGTGCTTTTTTCTATGAAAAATGATGTATTTTGCTACTTCCTGTGTACAAAGTTTTA
2721 TTGTAAATGTTTTTTGTGCTTTGCATGAACAGGGGCCACGTTGTTGCAATTGTTTCAGTAGAACTGGTTTGATTTCTAAA
2801 ATGTTCCTGTAACATATCTTTTATGAACAAATCTGAACAATTTGTGAAATAAAACATTGAAAACCATCAAAAAAAAAAAA
2881 AAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' gguAGAAGGAAGUCGGAg 5'
             || | | ||||||| 
Target 5' ttcTCATGCATCAGCCTc 3'
 2152 - 2169 151.00 -13.60
2 
miRNA  3' gguagAAGGAAGUCGGAg 5'
               |||  ||||||| 
Target 5' aagaaTTCGGTCAGCCTg 3'
 1704 - 1721 149.00 -11.50
3 
miRNA  3' gguAGAAGGAAGUCGGag 5'
             | ||::|||||||  
Target 5' accTATTTTTTCAGCCgt 3'
 1031 - 1048 139.00 -15.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31510342 13 COSMIC
COSN30455989 16 COSMIC
COSN26971890 17 COSMIC
COSN13694688 27 COSMIC
COSN1191742 28 COSMIC
COSN30156256 44 COSMIC
COSN26971893 45 COSMIC
COSN26971888 59 COSMIC
COSN30145355 62 COSMIC
COSN31530504 67 COSMIC
COSN1081729 77 COSMIC
COSN32053554 90 COSMIC
COSN7157106 93 COSMIC
COSN30491065 104 COSMIC
COSN23822119 398 COSMIC
COSN8673542 590 COSMIC
COSN17078470 1056 COSMIC
COSN1711703 1136 COSMIC
COSN26049476 1320 COSMIC
COSN31961243 1775 COSMIC
COSN29988050 1851 COSMIC
COSN26418297 1882 COSMIC
COSN9445252 2171 COSMIC
COSN31961244 2345 COSMIC
COSN5413268 2438 COSMIC
COSN31535744 2803 COSMIC
COSN22626510 2866 COSMIC
rs79754226 1418 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1353429061 1 dbSNP
rs1351831453 3 dbSNP
rs376397982 10 dbSNP
rs1274008197 12 dbSNP
rs186226489 13 dbSNP
rs879115641 15 dbSNP
rs770240749 16 dbSNP
rs776016770 17 dbSNP
rs749460169 18 dbSNP
rs768999596 20 dbSNP
rs1291472962 21 dbSNP
rs774499086 22 dbSNP
rs1220421651 26 dbSNP
rs761933782 27 dbSNP
rs372991636 28 dbSNP
rs1190928597 29 dbSNP
rs1388791710 30 dbSNP
rs1449461783 33 dbSNP
rs1164280516 34 dbSNP
rs1024813454 35 dbSNP
rs1416116431 38 dbSNP
rs1033244890 44 dbSNP
rs773163417 45 dbSNP
rs1403786304 48 dbSNP
rs760553173 52 dbSNP
rs753635886 53 dbSNP
rs754834321 57 dbSNP
rs766088331 60 dbSNP
rs764854851 65 dbSNP
rs1364347445 69 dbSNP
rs752340166 70 dbSNP
rs1285415234 72 dbSNP
rs777176792 73 dbSNP
rs746334368 75 dbSNP
rs559737670 77 dbSNP
rs749661522 78 dbSNP
rs1210968444 81 dbSNP
rs769195714 82 dbSNP
rs528907599 85 dbSNP
rs748352709 86 dbSNP
rs772143239 88 dbSNP
rs1471817484 90 dbSNP
rs773179462 97 dbSNP
rs1183088427 99 dbSNP
rs1418776465 100 dbSNP
rs1248476121 101 dbSNP
rs1412967468 103 dbSNP
rs760539486 105 dbSNP
rs766300171 107 dbSNP
rs941939122 108 dbSNP
rs776607682 109 dbSNP
rs1336041575 113 dbSNP
rs1338644391 114 dbSNP
rs200918687 116 dbSNP
rs764980618 117 dbSNP
rs1330756740 121 dbSNP
rs1226243488 125 dbSNP
rs752352998 126 dbSNP
rs562532236 127 dbSNP
rs758006312 129 dbSNP
rs1281259176 133 dbSNP
rs1304194998 141 dbSNP
rs1441260553 142 dbSNP
rs531578597 143 dbSNP
rs755223563 146 dbSNP
rs918919880 147 dbSNP
rs756890289 150 dbSNP
rs1252585636 153 dbSNP
rs780689797 154 dbSNP
rs751340304 156 dbSNP
rs911915050 156 dbSNP
rs754439025 157 dbSNP
rs1411533173 160 dbSNP
rs755355892 163 dbSNP
rs760998642 164 dbSNP
rs1159689160 165 dbSNP
rs1453281807 166 dbSNP
rs972373667 168 dbSNP
rs1178531897 175 dbSNP
rs920743676 178 dbSNP
rs1252454143 183 dbSNP
rs551361852 190 dbSNP
rs1055544894 197 dbSNP
rs571549237 200 dbSNP
rs1051487612 201 dbSNP
rs527608139 208 dbSNP
rs1349025995 221 dbSNP
rs943529770 223 dbSNP
rs1258534256 224 dbSNP
rs1324738179 229 dbSNP
rs1347892795 229 dbSNP
rs1450364555 231 dbSNP
rs1874008 232 dbSNP
rs904722850 233 dbSNP
rs1382521882 236 dbSNP
rs1181093591 241 dbSNP
rs566883467 250 dbSNP
rs999158707 251 dbSNP
rs1270356987 253 dbSNP
rs1394544309 253 dbSNP
rs748376639 254 dbSNP
rs535945432 255 dbSNP
rs1391284558 256 dbSNP
rs1000442335 260 dbSNP
rs1445585711 261 dbSNP
rs1031968488 264 dbSNP
rs1258712923 266 dbSNP
rs140671161 272 dbSNP
rs3803632 278 dbSNP
rs1024369953 280 dbSNP
rs560803451 288 dbSNP
rs374468416 291 dbSNP
rs1474152244 298 dbSNP
rs538468006 299 dbSNP
rs1226609989 303 dbSNP
rs1184290108 312 dbSNP
rs558083691 317 dbSNP
rs1364127933 324 dbSNP
rs1452851793 329 dbSNP
rs1415605347 338 dbSNP
rs1158196541 342 dbSNP
rs962094238 352 dbSNP
rs1383158693 354 dbSNP
rs980238221 356 dbSNP
rs972723542 361 dbSNP
rs1436818112 363 dbSNP
rs920881502 373 dbSNP
rs577888035 375 dbSNP
rs145887553 378 dbSNP
rs1256302004 384 dbSNP
rs991619601 386 dbSNP
rs916102018 390 dbSNP
rs973252968 391 dbSNP
rs1045507176 392 dbSNP
rs1337424532 400 dbSNP
rs919181684 401 dbSNP
rs1233633758 402 dbSNP
rs1354606736 405 dbSNP
rs928959881 406 dbSNP
rs1411906418 407 dbSNP
rs1290799567 408 dbSNP
rs902843793 409 dbSNP
rs116872726 412 dbSNP
rs1393459964 415 dbSNP
rs911586343 417 dbSNP
rs893017026 418 dbSNP
rs1416147243 419 dbSNP
rs371852138 424 dbSNP
rs1470990814 426 dbSNP
rs1049521078 432 dbSNP
rs1278932660 433 dbSNP
rs542309945 434 dbSNP
rs571185602 438 dbSNP
rs1291877791 448 dbSNP
rs1019069358 449 dbSNP
rs1333799529 451 dbSNP
rs562628829 452 dbSNP
rs936157229 457 dbSNP
rs993479460 460 dbSNP
rs531387350 462 dbSNP
rs1351739640 464 dbSNP
rs1279216669 466 dbSNP
rs1027661800 471 dbSNP
rs1332917430 473 dbSNP
rs1327082325 477 dbSNP
rs1179312764 478 dbSNP
rs1440904765 478 dbSNP
rs1392720055 479 dbSNP
rs952252934 485 dbSNP
rs1402053186 487 dbSNP
rs991755380 490 dbSNP
rs1157659591 492 dbSNP
rs916061224 493 dbSNP
rs545151973 494 dbSNP
rs1254340011 501 dbSNP
rs114939708 504 dbSNP
rs1374898562 512 dbSNP
rs1250889043 514 dbSNP
rs527545558 515 dbSNP
rs190745110 520 dbSNP
rs1447382694 523 dbSNP
rs1014531895 528 dbSNP
rs934408686 529 dbSNP
rs1304347614 532 dbSNP
rs1234164185 533 dbSNP
rs1369492405 536 dbSNP
rs1054025458 538 dbSNP
rs1431880956 542 dbSNP
rs1046131145 543 dbSNP
rs1317123606 555 dbSNP
rs1398649647 557 dbSNP
rs905896920 561 dbSNP
rs368638201 564 dbSNP
rs138501094 567 dbSNP
rs775055380 568 dbSNP
rs529334333 570 dbSNP
rs905581454 579 dbSNP
rs549194360 583 dbSNP
rs569300351 584 dbSNP
rs537976939 589 dbSNP
rs558284334 590 dbSNP
rs571515987 593 dbSNP
rs994009914 597 dbSNP
rs911541662 599 dbSNP
rs182220945 600 dbSNP
rs1027629109 605 dbSNP
rs974450710 606 dbSNP
rs925702233 613 dbSNP
rs1269150978 614 dbSNP
rs1023254412 615 dbSNP
rs936126238 617 dbSNP
rs534210828 618 dbSNP
rs554088230 619 dbSNP
rs1187501142 622 dbSNP
rs924791956 623 dbSNP
rs909448541 624 dbSNP
rs989885348 628 dbSNP
rs1307462219 631 dbSNP
rs1271290586 632 dbSNP
rs184971296 634 dbSNP
rs755346716 635 dbSNP
rs1046020331 636 dbSNP
rs1462415162 638 dbSNP
rs1353807812 639 dbSNP
rs536275762 641 dbSNP
rs12445556 642 dbSNP
rs375205415 659 dbSNP
rs1474386382 660 dbSNP
rs1442170414 666 dbSNP
rs1324799140 675 dbSNP
rs1038387318 679 dbSNP
rs1177900560 691 dbSNP
rs1049212693 692 dbSNP
rs898602350 695 dbSNP
rs191246850 698 dbSNP
rs150096588 705 dbSNP
rs1335897381 706 dbSNP
rs1215971534 709 dbSNP
rs1273025165 714 dbSNP
rs1232271139 721 dbSNP
rs1023387718 723 dbSNP
rs1295608805 726 dbSNP
rs183216204 732 dbSNP
rs2641670 733 dbSNP
rs1443086065 738 dbSNP
rs373508370 738 dbSNP
rs138389273 739 dbSNP
rs188491839 747 dbSNP
rs964698789 754 dbSNP
rs1160141905 757 dbSNP
rs767400624 758 dbSNP
rs750327551 759 dbSNP
rs549331574 760 dbSNP
rs1291514900 765 dbSNP
rs953805434 770 dbSNP
rs548434252 771 dbSNP
rs1212160360 775 dbSNP
rs912235042 776 dbSNP
rs149263675 782 dbSNP
rs943944046 785 dbSNP
rs1428038815 786 dbSNP
rs957095893 791 dbSNP
rs1306536204 792 dbSNP
rs973091862 796 dbSNP
rs531790027 801 dbSNP
rs918410989 806 dbSNP
rs931166758 811 dbSNP
rs551623215 816 dbSNP
rs2646108 817 dbSNP
rs1420736303 818 dbSNP
rs913388133 822 dbSNP
rs534149351 824 dbSNP
rs547667309 825 dbSNP
rs1175658314 827 dbSNP
rs1454782746 828 dbSNP
rs200356956 829 dbSNP
rs1394966042 831 dbSNP
rs887820341 832 dbSNP
rs1430604311 833 dbSNP
rs927580161 834 dbSNP
rs1205348519 836 dbSNP
rs4553617 838 dbSNP
rs1044374115 839 dbSNP
rs748381634 849 dbSNP
rs907226255 850 dbSNP
rs1003107711 851 dbSNP
rs567582397 852 dbSNP
rs1231058197 857 dbSNP
rs1289127686 874 dbSNP
rs1360629966 879 dbSNP
rs1381844335 883 dbSNP
rs1358804819 884 dbSNP
rs534265218 887 dbSNP
rs930057252 888 dbSNP
rs1047185248 892 dbSNP
rs1374941296 897 dbSNP
rs1021751480 901 dbSNP
rs1464038990 911 dbSNP
rs886232446 919 dbSNP
rs1355938244 920 dbSNP
rs1232616864 924 dbSNP
rs1373962304 927 dbSNP
rs1192978176 930 dbSNP
rs536564018 933 dbSNP
rs1270985685 940 dbSNP
rs1189627334 942 dbSNP
rs1485677514 943 dbSNP
rs1279077664 947 dbSNP
rs953773445 951 dbSNP
rs985629856 966 dbSNP
rs1019266209 967 dbSNP
rs556085729 968 dbSNP
rs1318538469 969 dbSNP
rs972665939 970 dbSNP
rs1295289906 975 dbSNP
rs575998936 976 dbSNP
rs1415686812 983 dbSNP
rs1354895300 993 dbSNP
rs1218175925 1006 dbSNP
rs369113622 1021 dbSNP
rs779875046 1022 dbSNP
rs1019250779 1026 dbSNP
rs983929653 1027 dbSNP
rs900435959 1028 dbSNP
rs1166644720 1030 dbSNP
rs1475356269 1036 dbSNP
rs1256169944 1040 dbSNP
rs144497434 1045 dbSNP
rs1032670146 1047 dbSNP
rs957065337 1048 dbSNP
rs1195171825 1050 dbSNP
rs1315823515 1051 dbSNP
rs1274889502 1052 dbSNP
rs928649378 1060 dbSNP
rs1334498767 1061 dbSNP
rs988519987 1068 dbSNP
rs747040912 1072 dbSNP
rs138072957 1073 dbSNP
rs113178212 1074 dbSNP
rs1344309715 1076 dbSNP
rs981650056 1077 dbSNP
rs927475091 1079 dbSNP
rs1314121916 1080 dbSNP
rs541194434 1081 dbSNP
rs4783099 1082 dbSNP
rs1414048848 1083 dbSNP
rs1291410376 1085 dbSNP
rs1011802617 1096 dbSNP
rs193142282 1097 dbSNP
rs929982160 1099 dbSNP
rs1363936214 1100 dbSNP
rs1177926984 1102 dbSNP
rs1456417583 1104 dbSNP
rs1254622700 1110 dbSNP
rs1047556881 1115 dbSNP
rs868264795 1116 dbSNP
rs1306027451 1117 dbSNP
rs1316497623 1118 dbSNP
rs17773634 1128 dbSNP
rs1351472192 1136 dbSNP
rs1282509074 1138 dbSNP
rs944514927 1139 dbSNP
rs1486060374 1141 dbSNP
rs1238588721 1150 dbSNP
rs183536085 1151 dbSNP
rs1256089083 1152 dbSNP
rs900370034 1161 dbSNP
rs996091700 1165 dbSNP
rs1032931799 1177 dbSNP
rs377480575 1178 dbSNP
rs1009916545 1180 dbSNP
rs543920282 1184 dbSNP
rs1385011004 1189 dbSNP
rs143677810 1192 dbSNP
rs147213353 1193 dbSNP
rs565071260 1198 dbSNP
rs527793333 1199 dbSNP
rs1034517928 1202 dbSNP
rs762518593 1204 dbSNP
rs916399316 1205 dbSNP
rs547555624 1209 dbSNP
rs563817742 1210 dbSNP
rs1442853790 1211 dbSNP
rs1365926122 1212 dbSNP
rs768305521 1214 dbSNP
rs1272330131 1216 dbSNP
rs928678201 1219 dbSNP
rs530415264 1220 dbSNP
rs574182585 1223 dbSNP
rs1053505290 1225 dbSNP
rs913248562 1226 dbSNP
rs1174169748 1229 dbSNP
rs1305956538 1233 dbSNP
rs550255657 1239 dbSNP
rs1422778423 1243 dbSNP
rs982823593 1247 dbSNP
rs1262668630 1257 dbSNP
rs1191794046 1259 dbSNP
rs912578390 1260 dbSNP
rs1281214426 1262 dbSNP
rs1276597031 1267 dbSNP
rs1311005488 1269 dbSNP
rs944127593 1278 dbSNP
rs889951286 1280 dbSNP
rs761352559 1281 dbSNP
rs921724366 1291 dbSNP
rs1339143803 1298 dbSNP
rs1277110751 1302 dbSNP
rs1041217686 1309 dbSNP
rs140646311 1311 dbSNP
rs993942420 1313 dbSNP
rs1232626142 1314 dbSNP
rs1446684738 1315 dbSNP
rs1357320764 1321 dbSNP
rs1172456152 1323 dbSNP
rs1410267884 1325 dbSNP
rs1054343434 1328 dbSNP
rs893075191 1337 dbSNP
rs538290558 1338 dbSNP
rs955337438 1339 dbSNP
rs1010591356 1342 dbSNP
rs142229668 1351 dbSNP
rs76372576 1352 dbSNP
rs1482335616 1354 dbSNP
rs1235036345 1355 dbSNP
rs1205846360 1356 dbSNP
rs1171134791 1358 dbSNP
rs1002625455 1359 dbSNP
rs1256630853 1361 dbSNP
rs1216376924 1362 dbSNP
rs7186628 1366 dbSNP
rs1313029772 1367 dbSNP
rs1227184927 1368 dbSNP
rs1376363975 1370 dbSNP
rs1299801029 1373 dbSNP
rs960371681 1374 dbSNP
rs958830758 1381 dbSNP
rs995645743 1382 dbSNP
rs988886165 1394 dbSNP
rs1418797379 1400 dbSNP
rs554763945 1402 dbSNP
rs1027171168 1404 dbSNP
rs1422071922 1417 dbSNP
rs79754226 1418 dbSNP
rs1178271688 1423 dbSNP
rs983471802 1424 dbSNP
rs1236704226 1425 dbSNP
rs1442900489 1431 dbSNP
rs912560869 1436 dbSNP
rs1328164628 1437 dbSNP
rs1371917899 1444 dbSNP
rs1469195519 1445 dbSNP
rs1265609399 1448 dbSNP
rs1220452192 1450 dbSNP
rs978977532 1457 dbSNP
rs965761613 1458 dbSNP
rs911432964 1462 dbSNP
rs1240759481 1463 dbSNP
rs1375996390 1471 dbSNP
rs1307031207 1473 dbSNP
rs1442745705 1475 dbSNP
rs1394958161 1476 dbSNP
rs1293141462 1479 dbSNP
rs1341599913 1486 dbSNP
rs370722525 1487 dbSNP
rs1215637162 1493 dbSNP
rs375517536 1497 dbSNP
rs1272986933 1505 dbSNP
rs1316435223 1508 dbSNP
rs1378939102 1509 dbSNP
rs543697230 1517 dbSNP
rs557002536 1525 dbSNP
rs576367625 1527 dbSNP
rs1041578834 1532 dbSNP
rs1267185107 1537 dbSNP
rs901368237 1542 dbSNP
rs929696617 1543 dbSNP
rs1054270309 1544 dbSNP
rs914435322 1551 dbSNP
rs1046885336 1553 dbSNP
rs1467713306 1559 dbSNP
rs544965744 1564 dbSNP
rs1005187527 1568 dbSNP
rs1300375615 1570 dbSNP
rs3751758 1571 dbSNP
rs560706352 1581 dbSNP
rs1042067474 1583 dbSNP
rs905085782 1584 dbSNP
rs1299039882 1587 dbSNP
rs1167244653 1593 dbSNP
rs1003475988 1594 dbSNP
rs1176077464 1613 dbSNP
rs1462954969 1616 dbSNP
rs1377403581 1618 dbSNP
rs1165311483 1625 dbSNP
rs1430694745 1630 dbSNP
rs906830938 1635 dbSNP
rs867593163 1636 dbSNP
rs1193952941 1640 dbSNP
rs1487668202 1640 dbSNP
rs1260493180 1642 dbSNP
rs1212891855 1646 dbSNP
rs1345690259 1650 dbSNP
rs1255360082 1651 dbSNP
rs1230708915 1656 dbSNP
rs1309056699 1660 dbSNP
rs527730594 1661 dbSNP
rs1461085664 1669 dbSNP
rs956592060 1670 dbSNP
rs988854865 1671 dbSNP
rs1055441026 1691 dbSNP
rs968783391 1697 dbSNP
rs72799585 1698 dbSNP
rs1270126747 1708 dbSNP
rs911236696 1712 dbSNP
rs561531874 1713 dbSNP
rs1170943334 1718 dbSNP
rs1339014750 1719 dbSNP
rs1477311731 1723 dbSNP
rs1372104636 1726 dbSNP
rs187930156 1729 dbSNP
rs192355402 1730 dbSNP
rs951669608 1731 dbSNP
rs1442524850 1739 dbSNP
rs1255317308 1743 dbSNP
rs1334657085 1743 dbSNP
rs1207671730 1744 dbSNP
rs1285977355 1747 dbSNP
rs1004428113 1753 dbSNP
rs116057507 1754 dbSNP
rs1258517625 1762 dbSNP
rs930194027 1767 dbSNP
rs1316242990 1768 dbSNP
rs1295384583 1776 dbSNP
rs1245524742 1781 dbSNP
rs1339957981 1787 dbSNP
rs1332755406 1795 dbSNP
rs1393716009 1797 dbSNP
rs1401437797 1799 dbSNP
rs1047268271 1800 dbSNP
rs965378310 1803 dbSNP
rs975835453 1808 dbSNP
rs114539523 1809 dbSNP
rs958093701 1813 dbSNP
rs1367457185 1818 dbSNP
rs989596457 1820 dbSNP
rs564832236 1824 dbSNP
rs1420857597 1825 dbSNP
rs1238737083 1828 dbSNP
rs552156307 1832 dbSNP
rs1034985393 1841 dbSNP
rs892289101 1858 dbSNP
rs1188618740 1866 dbSNP
rs758574616 1868 dbSNP
rs945874760 1870 dbSNP
rs977333800 1871 dbSNP
rs1471716939 1878 dbSNP
rs1378231488 1880 dbSNP
rs1009323366 1883 dbSNP
rs1397221739 1885 dbSNP
rs1022100218 1886 dbSNP
rs1325112632 1894 dbSNP
rs1401516364 1899 dbSNP
rs968742406 1904 dbSNP
rs374745761 1905 dbSNP
rs565689685 1910 dbSNP
rs1421020966 1911 dbSNP
rs1380764569 1916 dbSNP
rs534697985 1921 dbSNP
rs1055370347 1926 dbSNP
rs964115719 1927 dbSNP
rs554751784 1929 dbSNP
rs977398971 1936 dbSNP
rs532141100 1938 dbSNP
rs1199813053 1942 dbSNP
rs568223642 1960 dbSNP
rs894174829 1962 dbSNP
rs751804492 1963 dbSNP
rs1048133786 1964 dbSNP
rs1350870614 1966 dbSNP
rs1204211542 1969 dbSNP
rs1238700285 1974 dbSNP
rs887248964 1977 dbSNP
rs1275866184 1980 dbSNP
rs1283215898 1981 dbSNP
rs1486391959 1984 dbSNP
rs1004801161 1985 dbSNP
rs1256792864 1989 dbSNP
rs1420926565 1990 dbSNP
rs550635963 1991 dbSNP
rs1019839341 1995 dbSNP
rs1417827978 1999 dbSNP
rs1183636921 2001 dbSNP
rs1364183980 2006 dbSNP
rs901401484 2011 dbSNP
rs536881468 2020 dbSNP
rs149788366 2030 dbSNP
rs1477590467 2035 dbSNP
rs758542584 2037 dbSNP
rs778606506 2037 dbSNP
rs1245131933 2038 dbSNP
rs1196130562 2039 dbSNP
rs1218942071 2039 dbSNP
rs1228277005 2039 dbSNP
rs1262620076 2039 dbSNP
rs1279995139 2039 dbSNP
rs1340560593 2039 dbSNP
rs1350621198 2039 dbSNP
rs1401533598 2039 dbSNP
rs200128084 2039 dbSNP
rs202056163 2039 dbSNP
rs375959407 2039 dbSNP
rs747607696 2039 dbSNP
rs781611022 2039 dbSNP
rs1470611534 2040 dbSNP
rs1028319514 2048 dbSNP
rs1158315526 2057 dbSNP
rs1215522862 2058 dbSNP
rs1397615634 2059 dbSNP
rs941077159 2061 dbSNP
rs1044845269 2062 dbSNP
rs958065854 2062 dbSNP
rs1436721946 2063 dbSNP
rs1314013984 2065 dbSNP
rs926280512 2066 dbSNP
rs1394812582 2069 dbSNP
rs1478299933 2072 dbSNP
rs77864512 2074 dbSNP
rs1336759369 2087 dbSNP
rs1056544236 2088 dbSNP
rs1238500742 2091 dbSNP
rs1306698256 2097 dbSNP
rs1349402969 2098 dbSNP
rs1260435558 2099 dbSNP
rs578186164 2099 dbSNP
rs1318107704 2102 dbSNP
rs1279000258 2107 dbSNP
rs1380725164 2108 dbSNP
rs1482206017 2109 dbSNP
rs1021467974 2115 dbSNP
rs111806030 2118 dbSNP
rs558521405 2121 dbSNP
rs528751617 2125 dbSNP
rs1168818341 2126 dbSNP
rs977676826 2133 dbSNP
rs572157057 2134 dbSNP
rs1181756246 2135 dbSNP
rs938585799 2140 dbSNP
rs1472122019 2141 dbSNP
rs1178237632 2147 dbSNP
rs991400830 2149 dbSNP
rs1236645761 2150 dbSNP
rs1043525751 2152 dbSNP
rs757463691 2157 dbSNP
rs1000233011 2159 dbSNP
rs1256964345 2162 dbSNP
rs1018392900 2163 dbSNP
rs1322968480 2168 dbSNP
rs1312873800 2171 dbSNP
rs1227266496 2172 dbSNP
rs1376836666 2183 dbSNP
rs1311384049 2184 dbSNP
rs115441101 2185 dbSNP
rs1329559776 2188 dbSNP
rs1375955879 2188 dbSNP
rs781409654 2193 dbSNP
rs998156937 2196 dbSNP
rs1030095848 2203 dbSNP
rs1164108861 2205 dbSNP
rs951580665 2208 dbSNP
rs1170192427 2209 dbSNP
rs561261536 2219 dbSNP
rs1179827866 2220 dbSNP
rs1439456801 2222 dbSNP
rs367661684 2230 dbSNP
rs1397636939 2232 dbSNP
rs1175098900 2234 dbSNP
rs1489230450 2236 dbSNP
rs140661163 2238 dbSNP
rs1328867261 2242 dbSNP
rs1489567209 2245 dbSNP
rs1288065542 2252 dbSNP
rs910033359 2255 dbSNP
rs939806990 2265 dbSNP
rs543626977 2267 dbSNP
rs1041595284 2268 dbSNP
rs1302012124 2270 dbSNP
rs901373260 2271 dbSNP
rs1229484278 2272 dbSNP
rs1368519698 2273 dbSNP
rs144428748 2275 dbSNP
rs926361591 2288 dbSNP
rs1028583257 2289 dbSNP
rs893779249 2296 dbSNP
rs1338500940 2297 dbSNP
rs1379027284 2299 dbSNP
rs1010927319 2305 dbSNP
rs1254670733 2307 dbSNP
rs1469950093 2308 dbSNP
rs1194539893 2316 dbSNP
rs1021017343 2323 dbSNP
rs1264756087 2325 dbSNP
rs1217215968 2326 dbSNP
rs1352829451 2327 dbSNP
rs967178849 2328 dbSNP
rs183863751 2337 dbSNP
rs188147556 2339 dbSNP
rs146630545 2340 dbSNP
rs1298836392 2341 dbSNP
rs9933521 2343 dbSNP
rs528119972 2344 dbSNP
rs1383353467 2349 dbSNP
rs1168911203 2352 dbSNP
rs991330680 2353 dbSNP
rs1466866031 2354 dbSNP
rs1377491495 2356 dbSNP
rs1174880344 2366 dbSNP
rs1479281618 2367 dbSNP
rs915842104 2368 dbSNP
rs1487676108 2369 dbSNP
rs1039282367 2371 dbSNP
rs1397179152 2373 dbSNP
rs899890126 2375 dbSNP
rs1255233598 2376 dbSNP
rs1201562441 2381 dbSNP
rs952357894 2390 dbSNP
rs16974880 2391 dbSNP
rs761438320 2393 dbSNP
rs1029651663 2397 dbSNP
rs939756403 2401 dbSNP
rs1364853915 2407 dbSNP
rs568027132 2415 dbSNP
rs1017233110 2418 dbSNP
rs373127705 2419 dbSNP
rs1401937604 2420 dbSNP
rs1170961101 2423 dbSNP
rs1477201540 2426 dbSNP
rs922723816 2428 dbSNP
rs1295678680 2429 dbSNP
rs1370908541 2434 dbSNP
rs932815401 2449 dbSNP
rs1424375709 2454 dbSNP
rs1255428089 2458 dbSNP
rs1201471618 2464 dbSNP
rs1339689413 2465 dbSNP
rs1258938592 2467 dbSNP
rs1216745295 2470 dbSNP
rs1049977654 2471 dbSNP
rs537170638 2478 dbSNP
rs1335282606 2482 dbSNP
rs1011186034 2484 dbSNP
rs1265141773 2485 dbSNP
rs960472652 2488 dbSNP
rs1449381320 2491 dbSNP
rs1487546386 2496 dbSNP
rs1042769264 2500 dbSNP
rs1409048484 2503 dbSNP
rs192768991 2507 dbSNP
rs1393662256 2510 dbSNP
rs902547431 2511 dbSNP
rs992339776 2513 dbSNP
rs913566017 2517 dbSNP
rs1384471938 2522 dbSNP
rs570632661 2525 dbSNP
rs1206908298 2526 dbSNP
rs1004035607 2528 dbSNP
rs1035117667 2531 dbSNP
rs539348114 2533 dbSNP
rs1436245701 2534 dbSNP
rs1477754029 2535 dbSNP
rs979074081 2536 dbSNP
rs959836309 2537 dbSNP
rs552880119 2538 dbSNP
rs1022776534 2542 dbSNP
rs566977742 2545 dbSNP
rs1420440604 2546 dbSNP
rs771633257 2548 dbSNP
rs572094146 2549 dbSNP
rs1163623741 2551 dbSNP
rs952615407 2556 dbSNP
rs1333558711 2557 dbSNP
rs772639569 2558 dbSNP
rs908199423 2562 dbSNP
rs548203908 2573 dbSNP
rs143404268 2574 dbSNP
rs1380869689 2579 dbSNP
rs922361339 2585 dbSNP
rs1468411165 2592 dbSNP
rs1359378504 2594 dbSNP
rs934073051 2599 dbSNP
rs1295108058 2600 dbSNP
rs867822176 2606 dbSNP
rs1049906380 2608 dbSNP
rs1355840965 2610 dbSNP
rs1285936069 2641 dbSNP
rs556686949 2645 dbSNP
rs946944676 2648 dbSNP
rs8939 2652 dbSNP
rs902476303 2653 dbSNP
rs1344299621 2662 dbSNP
rs1004183556 2666 dbSNP
rs1401344343 2678 dbSNP
rs1003558731 2679 dbSNP
rs1315492477 2686 dbSNP
rs543907787 2688 dbSNP
rs1056928649 2689 dbSNP
rs563722760 2690 dbSNP
rs1016951178 2697 dbSNP
rs895216615 2702 dbSNP
rs1398721459 2704 dbSNP
rs1012311619 2705 dbSNP
rs148181046 2707 dbSNP
rs1033832547 2709 dbSNP
rs1195883983 2713 dbSNP
rs1488030452 2714 dbSNP
rs1478197623 2721 dbSNP
rs1215064446 2726 dbSNP
rs961199582 2729 dbSNP
rs1260307495 2730 dbSNP
rs1214365994 2740 dbSNP
rs546496905 2746 dbSNP
rs952586335 2752 dbSNP
rs1322356130 2756 dbSNP
rs1005840814 2758 dbSNP
rs1219869596 2760 dbSNP
rs140101155 2762 dbSNP
rs1015520081 2767 dbSNP
rs979042894 2768 dbSNP
rs924962945 2770 dbSNP
rs1412104587 2773 dbSNP
rs1404107640 2776 dbSNP
rs1420459751 2778 dbSNP
rs1478187989 2779 dbSNP
rs1418947278 2783 dbSNP
rs1185269818 2784 dbSNP
rs184881371 2785 dbSNP
rs975089609 2786 dbSNP
rs923127141 2794 dbSNP
rs1460268010 2799 dbSNP
rs2485 2802 dbSNP
rs1200211522 2804 dbSNP
rs1314641761 2810 dbSNP
rs1271736542 2814 dbSNP
rs1029358031 2818 dbSNP
rs1047605129 2823 dbSNP
rs1381205610 2825 dbSNP
rs953765914 2826 dbSNP
rs985243156 2829 dbSNP
rs1380393755 2833 dbSNP
rs940107798 2842 dbSNP
rs1447223744 2843 dbSNP
rs1354190568 2856 dbSNP
rs1038352262 2858 dbSNP
rs1300817882 2867 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' ggUAGAAG---GAAGUCggag 5'
            ||| ||   | ||||    
Target 5' caAUCCUCCCACCUCAG---- 3'
 		16 - 32
2 
miRNA  3' gguaGAAGGAAGUCGGAg 5'
              | |||  ||| || 
Target 5' ----CCUCC--CAGGCUc 3'
 		1 - 12
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM4903825
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / PID14_NS
Location of target site NM_031476 | 3UTR | AAUUCACAGGACUACGUGCUUUGUGCAUUGUAGUCUAGUCGUAAUUCAUAGGUACUGACUCCUCAGCCCCAAAUGUCGGAGAGGAAGAAUUCGGUCAGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161237
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_031476 | 3UTR | CCGGGUUCAAGCAAUUCUCAUGCAUCAGCCUCCCAAGUACCUGGGACUACAGGCGUGAGCUACCAUGCCCGGCUAAUUUUUGUAUUUUUAGUAGAGAUGGGGUUUCAUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_031476 | 3UTR | CCCGGGUUCAAGCAAUUCUCAUGCAUCAGCCUCCCAAGUACCUGGGACUACAGGCGUGAGCUACCAUGCCCGGCUAAUUUUUGUAUUUUUAGUAGAGAUGGGGUUUCAUUAUGUUGGCCAGGCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_031476 | 3UTR | GCCGCCUCCCGGGUUCAAGCAAUUCUCAUGCAUCAGCCUCCCAAGUACCUGGGACUACAGGCGUGAGCUACCAUGCCCGGCUAAUUUUUGUAUUUUUAGUAGAGAUGGGGUUUCAUUAUGUUGGCCAGGCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_031476 | 3UTR | GUUCAAGCAAUUCUCAUGCAUCAGCCUCCCAAGUACCUGGGACUACAGGCGUGAGCUACCAUGCCCGGCUAAUUUUUGUAUUUUUAGUAGAGAUGGGGUUUCAUUAUGUUGGCCAGGCUGGUCUCGAACUCCUUACCUCAGGUGAUCCACCCACCUUGGCCUCCCGAAGUGCUGGGAUUACAGGCAUGAGCCACUGCGCCCGGCCAUGGACCUGGCUGUCUUUAUCAUCCCCACAAACAUUUUGAAACUGGAAUAUUUGUCUUCAGAAAAUGGAAACAAGACUAUAAAUGAUAAGCCCUGUCCCUAGCACCACCUCUCCUGUGUGUGGAAUAGAGGCCCCUCGUGCUACCAACACUUACCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_031476 | 3UTR | AAGCAAUUCUCAUGCAUCAGCCUCCCAAGUACCUGGGACUACAGGCGUGAGCUACCAUGCCCGGCUAAUUUUUGUAUUUUUAGUAGAGAUGGGGUUUCAUUAUGUUGGCCAGGCUGGUCUCGAACUCCUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_031476 | 3UTR | CCGGGUUCAAGCAAUUCUCAUGCAUCAGCCUCCCAAGUACCUGGGACUACAGGCGUGAGCUACCAUGCCCGGCUAAUUUUUGUAUUUUUAGUAGAGAUGGGGUUUCAUUAUGUUGGCCAGGCUGGUCUCGAACUCCUUACCUCAGGUGAUCCACCCACCUUGGCCUCCCGAAGUGCUGGGAUUACAGGCAUGAGCCACUGCGCCCGGCCAUGGACCUGGCUGUCUUUAUCAUCCCCACAAACAUUUUGAAACUGGAAUAUUUGUCUUCAGAAAAUGGAAACAAGACUAUAAAUGAUAAGCCCUGUCCCUAGCACCACCUCUCCUGUGUGUGGAAUAGAGGCCCCUCGUGCUACCAACACUUACCCUGUGUUUAAAAAGAUCUUGUACCAAGCCAACGGCGUUCCUGGCUCUCCUGCCCACAGGAUGAACAUUUUCGGCUUCCUUAGGAGUUUUGCCCUACCGUAUUCCAAAGCGUGUGCUGGUUUCUCAUAUUGUCUGUAGGCUCACUCAGCCCGCAGUUUAUGUGUGUGCUUUUUUCUAUGAAAAAUGAUGUAUUUUGCUACUUCCUGUGUACAAAGUUUUAUUGUAAAUGUUUUUUGUGCUUUGCAUGAACAGGGGCCACGUUGUUGCAAUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000262424.5 | 3UTR | CCUCCCAGGCUCAAGCAAUCCUCCCACCUCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
390 hsa-miR-4419b Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT061343 WEE1 WEE1 G2 checkpoint kinase 2 4
MIRT072743 GLCE glucuronic acid epimerase 2 2
MIRT180549 TXNIP thioredoxin interacting protein 2 2
MIRT186147 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT271044 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 4
MIRT334761 PPP1R15B protein phosphatase 1 regulatory subunit 15B 2 6
MIRT443279 TSPAN15 tetraspanin 15 2 2
MIRT447047 ZNF439 zinc finger protein 439 2 2
MIRT447351 KIF6 kinesin family member 6 2 2
MIRT448925 CKS1B CDC28 protein kinase regulatory subunit 1B 2 2
MIRT452899 PSD4 pleckstrin and Sec7 domain containing 4 2 2
MIRT453087 SUMF2 sulfatase modifying factor 2 2 2
MIRT454071 SLC35E3 solute carrier family 35 member E3 2 2
MIRT456216 LIX1L limb and CNS expressed 1 like 2 6
MIRT456951 LRP10 LDL receptor related protein 10 2 2
MIRT458025 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT459999 RFT1 RFT1 homolog 2 2
MIRT460046 CDCP1 CUB domain containing protein 1 2 2
MIRT460982 STK17B serine/threonine kinase 17b 2 2
MIRT464405 URM1 ubiquitin related modifier 1 2 2
MIRT466256 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 2
MIRT466536 TBXA2R thromboxane A2 receptor 2 2
MIRT470922 PLD5 phospholipase D family member 5 2 8
MIRT472835 MTMR10 myotubularin related protein 10 2 6
MIRT473352 MEMO1 mediator of cell motility 1 2 2
MIRT475504 HSP90B1 heat shock protein 90 beta family member 1 2 2
MIRT478862 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT480898 BCL9L B-cell CLL/lymphoma 9 like 2 2
MIRT482686 NXN nucleoredoxin 2 4
MIRT484128 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT486172 TLE3 transducin like enhancer of split 3 2 4
MIRT486539 CLCN7 chloride voltage-gated channel 7 2 2
MIRT486588 ZNF619 zinc finger protein 619 2 2
MIRT495475 ALDOA aldolase, fructose-bisphosphate A 2 2
MIRT495536 TXNRD2 thioredoxin reductase 2 2 2
MIRT495566 UNC5C unc-5 netrin receptor C 2 2
MIRT495719 PADI1 peptidyl arginine deiminase 1 2 2
MIRT495890 CLOCK clock circadian regulator 2 2
MIRT495932 SLC7A5P2 solute carrier family 7 member 5 pseudogene 2 2 2
MIRT496026 ZBED3 zinc finger BED-type containing 3 2 2
MIRT496216 PAX6 paired box 6 2 2
MIRT496349 VAMP1 vesicle associated membrane protein 1 2 2
MIRT496354 PPY pancreatic polypeptide 2 2
MIRT496400 ZSCAN16 zinc finger and SCAN domain containing 16 2 2
MIRT496416 PARVB parvin beta 2 2
MIRT496458 N6AMT1 N-6 adenine-specific DNA methyltransferase 1 2 2
MIRT496519 GINS2 GINS complex subunit 2 2 2
MIRT496562 SLC39A9 solute carrier family 39 member 9 2 2
MIRT498605 KRT8 keratin 8 2 2
MIRT503434 SLC25A45 solute carrier family 25 member 45 2 6
MIRT503573 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 2
MIRT503847 ATP13A4 ATPase 13A4 2 4
MIRT504247 LHPP phospholysine phosphohistidine inorganic pyrophosphate phosphatase 2 4
MIRT505606 SLC35F1 solute carrier family 35 member F1 2 2
MIRT507749 CERS2 ceramide synthase 2 2 4
MIRT508411 C1orf210 chromosome 1 open reading frame 210 2 6
MIRT508508 RSRC1 arginine and serine rich coiled-coil 1 2 6
MIRT508944 AK4 adenylate kinase 4 2 4
MIRT509460 ZNF587 zinc finger protein 587 2 6
MIRT509862 ZNF641 zinc finger protein 641 2 4
MIRT511397 IKZF3 IKAROS family zinc finger 3 2 6
MIRT512517 BTBD19 BTB domain containing 19 2 2
MIRT513507 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 6
MIRT514155 TMEM145 transmembrane protein 145 2 4
MIRT514486 SLPI secretory leukocyte peptidase inhibitor 2 4
MIRT514521 SHISA9 shisa family member 9 2 2
MIRT514970 KLLN killin, p53-regulated DNA replication inhibitor 2 4
MIRT515030 IRAK4 interleukin 1 receptor associated kinase 4 2 6
MIRT515963 C9orf156 tRNA methyltransferase O 2 2
MIRT516092 ZBTB8OS zinc finger and BTB domain containing 8 opposite strand 2 4
MIRT517223 PRIM1 DNA primase subunit 1 2 4
MIRT517459 PEX26 peroxisomal biogenesis factor 26 2 4
MIRT517790 EFCAB11 EF-hand calcium binding domain 11 2 2
MIRT517979 DSCR3 DSCR3 arrestin fold containing 2 2
MIRT519458 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT519599 ZNF805 zinc finger protein 805 2 2
MIRT520339 UBXN2A UBX domain protein 2A 2 2
MIRT521345 RPP14 ribonuclease P/MRP subunit p14 2 2
MIRT521571 PTPLB 3-hydroxyacyl-CoA dehydratase 2 1 1
MIRT523382 GSG2 histone H3 associated protein kinase 2 8
MIRT524106 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT524886 ARHGAP11A Rho GTPase activating protein 11A 2 4
MIRT528772 CD1D CD1d molecule 2 2
MIRT530665 TRIM56 tripartite motif containing 56 2 2
MIRT531107 PEX13 peroxisomal biogenesis factor 13 2 2
MIRT531575 ILDR1 immunoglobulin like domain containing receptor 1 2 2
MIRT535173 PLEKHB2 pleckstrin homology domain containing B2 2 4
MIRT544168 HEYL hes related family bHLH transcription factor with YRPW motif-like 2 2
MIRT550582 SLC2A5 solute carrier family 2 member 5 2 2
MIRT551039 GDE1 glycerophosphodiester phosphodiesterase 1 2 4
MIRT551295 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 6
MIRT551339 MRE11A MRE11 homolog, double strand break repair nuclease 2 2
MIRT552092 SLFN12L schlafen family member 12 like 2 6
MIRT555403 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT557087 HOXB3 homeobox B3 2 2
MIRT559388 ATP11C ATPase phospholipid transporting 11C 2 2
MIRT560305 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT561028 LIN7C lin-7 homolog C, crumbs cell polarity complex component 2 2
MIRT562460 COX6B1 cytochrome c oxidase subunit 6B1 2 4
MIRT562982 PARK7 Parkinsonism associated deglycase 2 2
MIRT563548 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT564412 EMILIN2 elastin microfibril interfacer 2 2 4
MIRT569437 PCGF3 polycomb group ring finger 3 2 2
MIRT572097 EXOC8 exocyst complex component 8 2 2
MIRT575571 Cd99 CD99 antigen 2 2
MIRT575789 Tnfrsf10b tumor necrosis factor receptor superfamily, member 10b 2 2
MIRT576975 Lmtk2 lemur tyrosine kinase 2 2 2
MIRT610864 ARSA arylsulfatase A 2 2
MIRT614061 NTPCR nucleoside-triphosphatase, cancer-related 2 2
MIRT614141 THAP1 THAP domain containing 1 2 6
MIRT615235 BROX BRO1 domain and CAAX motif containing 2 2
MIRT617429 ANP32E acidic nuclear phosphoprotein 32 family member E 2 4
MIRT618882 MBL2 mannose binding lectin 2 2 2
MIRT618984 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT619196 SLC16A4 solute carrier family 16 member 4 2 2
MIRT620323 AQP6 aquaporin 6 2 2
MIRT621960 STX7 syntaxin 7 2 2
MIRT622057 SSBP2 single stranded DNA binding protein 2 2 2
MIRT624930 FBXW2 F-box and WD repeat domain containing 2 2 2
MIRT624986 ZNF665 zinc finger protein 665 2 4
MIRT625463 ZNF681 zinc finger protein 681 2 4
MIRT625497 SMAD9 SMAD family member 9 2 2
MIRT625599 KLHL23 kelch like family member 23 2 2
MIRT625668 C2orf48 chromosome 2 open reading frame 48 2 2
MIRT625888 INADL PATJ, crumbs cell polarity complex component 2 2
MIRT626161 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT626238 ZNF749 zinc finger protein 749 2 2
MIRT626631 SLC30A6 solute carrier family 30 member 6 2 2
MIRT626994 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT627898 OLFML2A olfactomedin like 2A 2 2
MIRT627988 NDRG3 NDRG family member 3 2 2
MIRT628324 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT628549 ZNF701 zinc finger protein 701 2 2
MIRT629464 WIZ widely interspaced zinc finger motifs 2 2
MIRT630527 BAZ2A bromodomain adjacent to zinc finger domain 2A 2 2
MIRT631487 KLHL21 kelch like family member 21 2 2
MIRT631957 CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 2 4
MIRT632178 CCL22 C-C motif chemokine ligand 22 2 2
MIRT632282 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT632321 TMEM185B transmembrane protein 185B 2 2
MIRT632853 IGF1 insulin like growth factor 1 2 2
MIRT632862 HSPA2 heat shock protein family A (Hsp70) member 2 2 2
MIRT633322 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT633398 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT633930 DNAH9 dynein axonemal heavy chain 9 2 2
MIRT634785 CBFA2T2 CBFA2/RUNX1 translocation partner 2 2 2
MIRT634851 ABCF1 ATP binding cassette subfamily F member 1 2 2
MIRT636370 OGFRL1 opioid growth factor receptor like 1 2 2
MIRT637219 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT637690 PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D 2 2
MIRT639196 TRAPPC2 trafficking protein particle complex 2 2 2
MIRT639599 CD3EAP CD3e molecule associated protein 2 2
MIRT639681 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT640669 ARSK arylsulfatase family member K 2 2
MIRT642377 ZNF581 zinc finger protein 581 2 2
MIRT642403 ZNF556 zinc finger protein 556 2 2
MIRT645079 UQCRQ ubiquinol-cytochrome c reductase complex III subunit VII 2 2
MIRT646475 ZNF669 zinc finger protein 669 2 2
MIRT647325 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT647490 ZNF639 zinc finger protein 639 2 2
MIRT647989 PDE12 phosphodiesterase 12 2 2
MIRT648196 CENPN centromere protein N 2 2
MIRT649006 MRPL49 mitochondrial ribosomal protein L49 2 2
MIRT650457 ZNF141 zinc finger protein 141 2 2
MIRT650533 CCDC77 coiled-coil domain containing 77 2 2
MIRT650999 ZNF770 zinc finger protein 770 2 2
MIRT653832 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 4
MIRT655734 NRXN3 neurexin 3 2 2
MIRT657577 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT658610 ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 2 2
MIRT658633 ENAH ENAH, actin regulator 2 2
MIRT659820 CASP16 caspase 16, pseudogene 2 2
MIRT661142 ZNF43 zinc finger protein 43 2 2
MIRT661201 MPPE1 metallophosphoesterase 1 2 2
MIRT661436 MANSC1 MANSC domain containing 1 2 2
MIRT661498 CHMP1B charged multivesicular body protein 1B 2 2
MIRT661682 ZNF623 zinc finger protein 623 2 2
MIRT661796 NLRC3 NLR family CARD domain containing 3 2 2
MIRT661808 NUP85 nucleoporin 85 2 2
MIRT661861 ZNF766 zinc finger protein 766 2 2
MIRT661889 EXOSC6 exosome component 6 2 2
MIRT662291 SLC29A4 solute carrier family 29 member 4 2 2
MIRT662515 ANGPT4 angiopoietin 4 2 2
MIRT662682 LRRC47 leucine rich repeat containing 47 2 2
MIRT662716 C10orf111 chromosome 10 open reading frame 111 2 4
MIRT662834 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT662890 PCDHA6 protocadherin alpha 6 2 2
MIRT663134 ULBP3 UL16 binding protein 3 2 2
MIRT663710 ABHD17B abhydrolase domain containing 17B 2 2
MIRT663869 MUC20 mucin 20, cell surface associated 2 2
MIRT664267 NMUR1 neuromedin U receptor 1 2 2
MIRT664510 POLR3K RNA polymerase III subunit K 2 2
MIRT664659 TRIM65 tripartite motif containing 65 2 2
MIRT664849 HUS1 HUS1 checkpoint clamp component 2 2
MIRT664944 CARD6 caspase recruitment domain family member 6 2 4
MIRT665348 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 2
MIRT665514 UTP15 UTP15, small subunit processome component 2 2
MIRT665648 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT665668 TRAF1 TNF receptor associated factor 1 2 2
MIRT665692 TNPO3 transportin 3 2 2
MIRT665741 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT665850 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT665940 TBC1D19 TBC1 domain family member 19 2 4
MIRT666005 SYNJ2BP synaptojanin 2 binding protein 2 2
MIRT666172 SNX27 sorting nexin family member 27 2 4
MIRT666373 SHOX short stature homeobox 2 2
MIRT667004 PDPN podoplanin 2 4
MIRT667185 NR2F6 nuclear receptor subfamily 2 group F member 6 2 4
MIRT667603 LIPC lipase C, hepatic type 2 2
MIRT667828 IRGQ immunity related GTPase Q 2 2
MIRT667862 IPCEF1 interaction protein for cytohesin exchange factors 1 2 2
MIRT668296 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 4
MIRT668463 FAM208A family with sequence similarity 208 member A 2 2
MIRT668580 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 4
MIRT669012 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT669103 CDK19 cyclin dependent kinase 19 2 2
MIRT670073 ZNF783 zinc finger family member 783 2 2
MIRT670326 CEP57L1 centrosomal protein 57 like 1 2 2
MIRT670756 HOOK3 hook microtubule tethering protein 3 2 2
MIRT670964 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT670985 MED17 mediator complex subunit 17 2 2
MIRT671195 ZNF891 zinc finger protein 891 2 2
MIRT672423 SLC10A6 solute carrier family 10 member 6 2 2
MIRT672495 YIPF4 Yip1 domain family member 4 2 2
MIRT672537 MGAM maltase-glucoamylase 2 2
MIRT672749 ZNF585B zinc finger protein 585B 2 4
MIRT673390 ZNF124 zinc finger protein 124 2 2
MIRT673452 ZNF583 zinc finger protein 583 2 2
MIRT673917 DCTN6 dynactin subunit 6 2 2
MIRT673952 ZNF500 zinc finger protein 500 2 2
MIRT674102 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT674167 BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 2 2
MIRT674206 FUT2 fucosyltransferase 2 2 2
MIRT674452 PURB purine rich element binding protein B 2 4
MIRT674687 PLCE1 phospholipase C epsilon 1 2 2
MIRT674701 TMEM59 transmembrane protein 59 2 2
MIRT674800 NPR1 natriuretic peptide receptor 1 2 4
MIRT675247 MAK male germ cell associated kinase 2 2
MIRT676012 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676374 APTX aprataxin 2 2
MIRT676834 TNFSF15 TNF superfamily member 15 2 2
MIRT678193 CRCP CGRP receptor component 2 2
MIRT678293 PTRH2 peptidyl-tRNA hydrolase 2 2 2
MIRT679532 RAB36 RAB36, member RAS oncogene family 2 2
MIRT679669 RABAC1 Rab acceptor 1 2 2
MIRT679850 GPR75 G protein-coupled receptor 75 2 2
MIRT680533 PRIM2 DNA primase subunit 2 2 2
MIRT680563 ZNF584 zinc finger protein 584 2 2
MIRT680577 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT680849 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT680888 MAPK1IP1L mitogen-activated protein kinase 1 interacting protein 1 like 2 2
MIRT680940 EVC EvC ciliary complex subunit 1 2 2
MIRT680964 SLC15A1 solute carrier family 15 member 1 2 4
MIRT681017 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 2 2
MIRT681065 PAQR7 progestin and adipoQ receptor family member 7 2 2
MIRT681209 ZNF638 zinc finger protein 638 2 2
MIRT681291 RFC2 replication factor C subunit 2 2 2
MIRT681366 BRI3BP BRI3 binding protein 2 2
MIRT681517 STAT2 signal transducer and activator of transcription 2 2 2
MIRT681549 ZNF738 zinc finger protein 738 2 2
MIRT681574 ABHD15 abhydrolase domain containing 15 2 2
MIRT681597 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT681806 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT681912 SLC11A2 solute carrier family 11 member 2 2 2
MIRT681953 SLC19A3 solute carrier family 19 member 3 2 2
MIRT682037 AGXT2 alanine--glyoxylate aminotransferase 2 2 4
MIRT682111 ITGA3 integrin subunit alpha 3 2 4
MIRT682190 SLC38A7 solute carrier family 38 member 7 2 2
MIRT682247 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT682394 PHACTR4 phosphatase and actin regulator 4 2 2
MIRT682554 EXOSC2 exosome component 2 2 2
MIRT682665 CASP8 caspase 8 2 2
MIRT683283 ZNF99 zinc finger protein 99 2 2
MIRT683359 SCARF1 scavenger receptor class F member 1 2 2
MIRT683453 ACOT2 acyl-CoA thioesterase 2 2 2
MIRT683596 GSTCD glutathione S-transferase C-terminal domain containing 2 2
MIRT683661 ZNF695 zinc finger protein 695 2 2
MIRT683770 CPE carboxypeptidase E 2 2
MIRT683807 NOTO notochord homeobox 2 2
MIRT684462 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT684525 C1orf174 chromosome 1 open reading frame 174 2 2
MIRT684985 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT685012 CXorf56 chromosome X open reading frame 56 2 2
MIRT685072 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685115 DTD2 D-tyrosyl-tRNA deacylase 2 (putative) 2 2
MIRT685477 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT685831 SLC27A1 solute carrier family 27 member 1 2 2
MIRT686032 UMPS uridine monophosphate synthetase 2 2
MIRT686559 TPM3 tropomyosin 3 2 2
MIRT687287 PARP2 poly(ADP-ribose) polymerase 2 2 2
MIRT687309 OTUD7B OTU deubiquitinase 7B 2 2
MIRT688085 GLUL glutamate-ammonia ligase 2 2
MIRT688168 GABPB1 GA binding protein transcription factor beta subunit 1 2 2
MIRT688584 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT688601 CYCS cytochrome c, somatic 2 2
MIRT688921 C11orf84 chromosome 11 open reading frame 84 2 2
MIRT689285 C5AR2 complement component 5a receptor 2 2 2
MIRT689622 AKAP6 A-kinase anchoring protein 6 2 2
MIRT690051 C6orf141 chromosome 6 open reading frame 141 2 2
MIRT690224 C5orf45 MRN complex interacting protein 2 2
MIRT690272 CAMLG calcium modulating ligand 2 2
MIRT690331 MRPS30 mitochondrial ribosomal protein S30 2 2
MIRT690480 ZNF33A zinc finger protein 33A 2 2
MIRT690526 ZNF566 zinc finger protein 566 2 2
MIRT690581 MICA MHC class I polypeptide-related sequence A 2 2
MIRT690675 RPF2 ribosome production factor 2 homolog 2 2
MIRT690790 ZNF589 zinc finger protein 589 2 2
MIRT690873 PLEKHG2 pleckstrin homology and RhoGEF domain containing G2 2 2
MIRT691142 HJURP Holliday junction recognition protein 2 2
MIRT691158 APOL6 apolipoprotein L6 2 2
MIRT691288 CENPM centromere protein M 2 2
MIRT691435 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT691749 IKBKG inhibitor of nuclear factor kappa B kinase subunit gamma 2 2
MIRT691833 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT691885 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT691947 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT692047 PAK1IP1 PAK1 interacting protein 1 2 2
MIRT692668 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT692767 NDUFS5 NADH:ubiquinone oxidoreductase subunit S5 2 2
MIRT692859 ZSWIM1 zinc finger SWIM-type containing 1 2 2
MIRT693122 SCNM1 sodium channel modifier 1 2 2
MIRT693514 MOB3A MOB kinase activator 3A 2 2
MIRT693648 ACBD7 acyl-CoA binding domain containing 7 2 2
MIRT693688 MXRA7 matrix remodeling associated 7 2 2
MIRT694078 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT694163 SLC36A2 solute carrier family 36 member 2 2 2
MIRT694262 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT694506 AGBL5 ATP/GTP binding protein like 5 2 2
MIRT694556 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 2 2
MIRT694639 MRI1 methylthioribose-1-phosphate isomerase 1 2 2
MIRT694710 CD300LG CD300 molecule like family member g 2 2
MIRT694753 LLGL1 LLGL1, scribble cell polarity complex component 2 2
MIRT694896 ZNF417 zinc finger protein 417 2 2
MIRT695158 BTD biotinidase 2 2
MIRT695275 CD209 CD209 molecule 2 2
MIRT695434 TCF23 transcription factor 23 2 2
MIRT695817 SRD5A1 steroid 5 alpha-reductase 1 2 2
MIRT696008 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT696345 SLC35D2 solute carrier family 35 member D2 2 2
MIRT696368 EIF2S3 eukaryotic translation initiation factor 2 subunit gamma 2 2
MIRT696533 C3 complement C3 2 2
MIRT696779 DHODH dihydroorotate dehydrogenase (quinone) 2 2
MIRT697075 PSMC4 proteasome 26S subunit, ATPase 4 2 2
MIRT697498 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT697630 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT697931 TXNDC16 thioredoxin domain containing 16 2 2
MIRT697966 TSPYL1 TSPY like 1 2 2
MIRT698237 TMEM216 transmembrane protein 216 2 2
MIRT698643 TES testin LIM domain protein 2 2
MIRT698661 TERF2 telomeric repeat binding factor 2 2 2
MIRT698974 SPAST spastin 2 2
MIRT699047 SOAT1 sterol O-acyltransferase 1 2 2
MIRT699193 SLX4IP SLX4 interacting protein 2 2
MIRT699586 SIKE1 suppressor of IKBKE 1 2 2
MIRT699759 SEPHS1 selenophosphate synthetase 1 2 2
MIRT700350 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT700402 RAB13 RAB13, member RAS oncogene family 2 2
MIRT700418 QDPR quinoid dihydropteridine reductase 2 2
MIRT700546 PTBP2 polypyrimidine tract binding protein 2 2 2
MIRT700774 PLA2G4A phospholipase A2 group IVA 2 2
MIRT700875 PER2 period circadian clock 2 2 2
MIRT700952 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT701077 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT701172 PACS2 phosphofurin acidic cluster sorting protein 2 2 2
MIRT701479 NEK9 NIMA related kinase 9 2 2
MIRT701661 MYH9 myosin heavy chain 9 2 2
MIRT701779 MSL2 MSL complex subunit 2 2 2
MIRT702137 MAPKAPK5 mitogen-activated protein kinase-activated protein kinase 5 2 2
MIRT702494 KIAA1328 KIAA1328 2 2
MIRT703058 GTPBP10 GTP binding protein 10 2 2
MIRT703224 GOLGA3 golgin A3 2 2
MIRT703620 FBXO45 F-box protein 45 2 2
MIRT703657 FAM60A SIN3-HDAC complex associated factor 2 2
MIRT703765 FAM118A family with sequence similarity 118 member A 2 2
MIRT703832 EVI5 ecotropic viral integration site 5 2 2
MIRT703862 ERN1 endoplasmic reticulum to nucleus signaling 1 2 2
MIRT704664 CLCC1 chloride channel CLIC like 1 2 2
MIRT704812 CDC73 cell division cycle 73 2 2
MIRT705608 APAF1 apoptotic peptidase activating factor 1 2 2
MIRT705625 AP1S3 adaptor related protein complex 1 sigma 3 subunit 2 2
MIRT705682 ANKRD40 ankyrin repeat domain 40 2 2
MIRT705813 AKNA AT-hook transcription factor 2 2
MIRT706238 SYT15 synaptotagmin 15 2 2
MIRT706567 EIF2AK2 eukaryotic translation initiation factor 2 alpha kinase 2 2 2
MIRT709657 DFFB DNA fragmentation factor subunit beta 2 2
MIRT710609 ZNF555 zinc finger protein 555 2 2
MIRT711717 IREB2 iron responsive element binding protein 2 2 2
MIRT714122 TMED9 transmembrane p24 trafficking protein 9 2 2
MIRT715204 FKTN fukutin 2 2
MIRT718260 ZDHHC8 zinc finger DHHC-type containing 8 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4419b Fluorouracil 3385 NSC19893 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-4419b Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-4419b Cisplatin + Decitabine resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-mir-4419b Androstenedione+Anastrozole sensitive cell line (MCF-7)

Error report submission