miRTarBase - #MIRT479493


—
pre-miRNA Information
pre-miRNA hsa-mir-6737   
Genomic Coordinates chr1: 153962351 - 153962420
Description Homo sapiens miR-6737 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6737-5p
Sequence 6| UUGGGGUGGUCGGCCCUGGAG |26
Evidence Experimental
Experiments Meta-analysis
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs766338599 4 dbSNP
rs765728788 7 dbSNP
rs757341439 9 dbSNP
rs539511149 11 dbSNP
rs764259486 12 dbSNP
rs988937601 21 dbSNP
Putative Targets

Gene Information
Gene Symbol CDH6   
Synonyms CAD6, KCAD
Description cadherin 6
Transcript NM_004932   
Expression
Putative miRNA Targets on CDH6
3'UTR of CDH6
(miRNA target sites are highlighted)		 
>CDH6|NM_004932|3'UTR
   1 TCTGTTGCCTTTTTCATTTTCCAATACGACACTGAAATATGTGAAGTGGCTATTTCTTTATATTTATCCACTACTCCGTG
  81 AAGGCTTCTCTGTTCTACCCGTTCCAAAAGCCAATGGCTGCAGTCCGTGTGGATCCAATGTTAGAGACTTTTTTCTAGTA
 161 CACTTTTATGAGCTTCCAAGGGGCAAATTTTTATTTTTTAGTGCATCCAGTTAACCAAGTCAGCCCAACAGGCAGGTGCC
 241 GGAGGGGAGGACAGGGAACAGTATTTCCACTTGTTCTCAGGGCAGCGTGCCCGCTTCCGCTGTCCTGGTGTTTTACTACA
 321 CTCCATGTCAGGTCAGCCAACTGCCCTAACTGTACATTTCACAGGCTAATGGGATAAAGGACTGTGCTTTAAAGATAAAA
 401 ATATCATCATAGTAAAAGAAATGAGGGCATATCGGCTCACAAAGAGATAAACTACATAGGGGTGTTTATTTGTGTCACAA
 481 AGAATTTAAAATAACACTTGCCCATGCTATTTGTTCTTCAAGAACTTTCTCTGCCATCAACTACTATTCAAAACCTCAAA
 561 TCCACCCATATGTTAAAATTCTCATTACTCTTAAGGAATAGAAGCAAATTAAACGGTAACATCCAAAAGCAACCACAAAC
 641 CTAGTACGACTTCATTCCTTCCACTAACTCATAGTTTGTTATATCCTAGACTAGACATGCGAAAGTTTGCCTTTGTACCA
 721 TATAAAGGGGGAGGGAAATAGCTAATAATGTTAACCAAGGAAATATATTTTACCATACATTTAAAGTTTTGGCCACCACA
 801 TGTATCACGGGTCACTTGAAATTCTTTCAGCTATCAGTAGGCTAATGTCAAAATTGTTTAAAAATTCTTGAAAGAATTTT
 881 CCTGAGACAAATTTTAACTTCTTGTCTATAGTTGTCAGTATTATTCTACTATACTGTACATGAAAGTAGCAGTGTGAAGT
 961 ACAATAATTCATATTCTTCATATCCTTCTTACACGACTAAGTTGAATTAGTAAAGTTAGATTAAATAAAACTTAAATCTC
1041 ACTCTAGGAGTTCAGTGGAGAGGTTAGAGCCAGCCACACTTGAACCTAATACCCTGCCCTTGACATCTGGAAACCTCTAC
1121 ATATTTATATAACGTGATACATTTGGATAAACAACATTGAGATTATGATGAAAACCTACATATTCCATGTTTGGAAGACC
1201 CTTGGAAGAGGAAAATTGGATTCCCTTAAACAAAAGTGTTTAAGATTGTAATTAAAATGATAGTTGATTTTCAAAAGCAT
1281 TAATTTTTTTTCATTGTTTTTAACTTTGCTTTCATGACCATCCTGCCATCCTTGACTTTGAACTAATGATAAAGTAATGA
1361 TCTCAAACTATGACAGAAAAGTAATGTAAAATCCATCCAATCTATTATTTCTCTAATTATGCAATTAGCCTCATAGTTAT
1441 TATCCAGAGGACCCAACTGAACTGAACTAATCCTTCTGGCAGATTCAAATCGTTTATTTCACACGCTGTTCTAATGGCAC
1521 TTATCATTAGAATCTTACCTTGTGCAGTCATCAGAAATTCCAGCGTACTATAATGAAAACATCCTTGTTTTGAAAACCTA
1601 AAAGACAGGCTCTGTATATATATATACTTAAGAATATGCTGACTTCACTTATTAGTCTTAGGGATTTATTTTCAATTAAT
1681 ATTAATTTTCTACAAATAATTTTAGTGTCATTTCCATTTGGGGATATTGTCATATCAGCACATATTTTCTGTTTGGAAAC
1761 ACACTGTTGTTTAGTTAAGTTTTAAATAGGTGTATTACCCAAGAAGTAAAGATGGAAACGTTAAAAGAAGAGAAATGTAG
1841 TATTTTGGGTTACCTGATTAGAGTGAAAATTTTTTACAATCATATTATTCCTTGTGTCTTCTGAATGGTTTCCGATTTTA
1921 TAATGGACTGCCCTATATAGTAACAAGTATTTCATGCTTGAGCTATTTCCTGCTTTCAGGGTTTCTTTTTTCTAGTTCTT
2001 CATACACACACATACACACACACACACACACACACACACACACACACGAATGCAAACAAAAGGCTATATGAGGTCTTCAC
2081 TCTAATGAATTGATATGTATCATAGTCACAGGTAAGTGTTGAAAAAAGCTTAGTAAAGTTAGAAGCTACTTACTCATAGC
2161 AATAGAACAGCACCTTAATCACACGATTTACTGTAAAATTAAAGAGGTCTCTATCTGTATGTTTCATGTCACGTAACAAA
2241 TTGAATCAAGGAAGATAGTCCTGTAAAAAGAAAGGTATCATCTGAAGTTGAGGATTGACACTAGCAGTTTCCAATGTTTA
2321 AAGGTAAGATCTGAGTTCTCCTAATAAGTAAAAGTAAGTAGTTCTATAGCAGAATATCTGAGATGTAATTGGCAAGGTAT
2401 TTTATCCCTCCCTGCAGATGACACAGCATACCAAGAACAGGTTAATATGATTACTTATGGAAATAACTTTAATCTCTTAT
2481 CATAAAAGCTGATGATGAAGTAAATTTATAGGAAATTGGATAATTTGAGACTGGGGCTAAATATTTAGTACCAGGGTACT
2561 GTAAGTATCAAGTTGGAGTGACGTTTTCCTATAATTCAGACTCTTTGACATCGTGGAACCAATAAGAGTCATAGTTCCAT
2641 CATTCTCCAGCTTCGTCTCACTTCCTTCCCACCCCACCTGAGTATCAGGTCAAACATCATTGCATGCGCAGGTTTTTTTT
2721 TTAATTGCTAGGTCCCAGGCAACATGAAAGATTATTGGAGAAAAAAATAATTTTCAGCCCAGTTTTTTCATTGTCTGTTT
2801 CCTAATTTTAGATGTTGGTGATGGGAAAGATGGAAGGAGAGTGGGAAGAAGTAAAATTTTAATATTTGTTTCAATCACTT
2881 TGAAACTAAAATTCATTAAGCATAACCAGATTGCTTTTGTGGGTTGTTTCAAGGACATTGAGAGCTTTCTGATGATATGT
2961 TTTTGCCCTCTATTCAAAAGCAAGAGTTCCTTTAAACTACTAAGATATTCCCTAGAATAAGCTGAATTTAAAAAAACATT
3041 AAGCCATTGTTTAAAGCCCCTTCACTTCCTGGCCACTTACTTCTGAAAGGCCTAAAAAACATTTGTGCCCAAATAAGTAA
3121 ATAAACCAAATGGGAAAGAAGCAAAGATTATTCCATAGAACCACAAGAGAGGGAATGTGGGCACAGTAAATAGATGTTTC
3201 TTTCAGAACTTTCCTGCCTTTACAGTTTGTGTCCATAAAGGGATGTTCAGCAATGAAATTACTCCCTTTTCAGATGGAAC
3281 AAAACCTGCCCATTTAATTTTAACGCAGTATAAAAAACGTGTGGTTTAGTTTTTATTTTCAGCTCCCAAAGAGTTGTGCA
3361 GAAAATCTTAAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGAATCTCGCTCTGTCGCCCAGGCTGGAATGCAG
3441 TGGCGCGATCTCTGCTCACTACAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCGCCCCCAGTAGCTGGGA
3521 CTACAGGCACACACCACCACGCCCGGCTAATTTTTGTTGTATTTTTTAGTGGAGACAGGGTTTCACCATGTTAGCCAGGA
3601 TGATCTCCATCTCCTGACCTCGTGGTCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCC
3681 CGGCCTTAAAAATTGAATCTGTAGCTTAGGCCATCCAAATTTTATAAATCCAAATTAACTTTAGAATGTTTCTATTACTT
3761 TCACTTTTACATATATAAATTTTAAGTGTCCTGATTGGCTGAACAATATCTCACATCAAATGCTTTGCCTGGAAATAGAT
3841 ATCCCACTGGGGATAGTGGTGTGTAAACTATGACTTGGACAATTCTATATACTCAAGCACCATAAAAAGTATGCAGTTGA
3921 AAAGAAAATCAAAGTTGATTCCTGGGTGCCAACTAAATATTCAAATCAGGTACTCATCCTTATCAGCTAAATTCATTTTC
4001 ACCAGGAACAGACCACCAAATAAATTATTTTATCCTAATAACTAGTTTTGAAGCAGTGTAATTACTCTGGAAGAAGGCTC
4081 TAAAAAGTCATGATTCCCCCACTATTTTGAAATGTATCCTCTAACAAGGATCATTATAGTGTAATCTTAATTTTTATGTT
4161 TTATCAAGATGAAATCTTGTTTGAATTGTGATATTATAAAAGGGGACTCAAAAATCCAAGCAGTCTACTGTGTTTAAATT
4241 AACACCACAACCTTCCTTATCAGATTATAAGAGTAGAAAAATTAACACTTGGTGTGTGAATCTTCAGGAAAATGAGCTAT
4321 TTCATAAGCTCAAACAAGCAGCTTCCTTTTCCAGAGAATATAGAATTATATTATGGTCTCCTTAAATGTTTAGTAGCTCT
4401 TATGGTCACAGCATTTTTAATCTCCCTATGGCATCTTTATGGAATAATTTTCTAAAGGGTAATTCTCTACTAAAAATATC
4481 AGACCCCGACCATATTTAATGTGGAGAGCAATACCCTCTTAGAAAGAAAATACATTGACTCATACACTTGTTAAAAGTTA
4561 ATAAAGAAATAGCTCATTTTTAAAGCCGGAAGTTTATGGTCTCTGCATCGTCAATTTAATTTAAGCATTGCTGAGACAAT
4641 CTTTAATCTACTCCCCTTTTTGTAATACCTTATTTATGGTGCATTTTCATTTTTATTTGGGGGAAACGTTAGCCCAACAG
4721 AGCCGGCAGATGAAAGTGTTGAAAAGAGGTCAAATGGAAACAAAGGCTCTTACCCGCTGTATTTCAGACAGGACTGAGGC
4801 ACTTAGCCGAGGAGCCACTGGGTTATTAGATTAATTTCAAAAGAGCTTTTACAAGTTGCTTAATTCCTTTTTTTTTTTTT
4881 TTTTTTTTCAAAAACCCATGAACCACAAACTCAAATTTCTCCTCAAATGGGGTTAATCTGACAAACGAGGCATGGACCCA
4961 GCCTTGTGGAAAAAGCATTCCACGCTAATGAGATCTTGGTCTTTCTTGTGAGGCTACGTTATTTATGTAAATATGTCTGG
5041 AGGCACCTTCTCTAAGCTTTTAGTTTTCTATGATCTATTAGTTTAGTGTTTATTAAAGAATCAAATGTATAGAATTACCA
5121 GGCATTCGTGGGGAATGCTGTGTAGCAAATGTAAAACTGACCTGCTCGGAAGAAACGTAGGAACGCTTCAAACCCACTGT
5201 AATGTTTGGTTTGAGATTATTTTCATTGCTTTGAGAGTGAACTGCCTAAGAGTAGGCCTTATAATAAATGCTATGTGCGT
5281 CTTCAGTAGTTCCAAGCTAAAGCAATTTGGCATTCTCCCACTGTGATTTGTGACTTTTAAACCCACAAAATAAAAGCTTT
5361 TTGGTATTGATTGTTTTTAATTAAAAATACTTCCAAGTATAAATTGAAACGGATGCCACCCTTGAAGATTTACTGGCGGG
5441 AATGCTCACTCTTGTCGTTTTCCTCAGTATCGTTCATGTCTTTGGCAACAAGAACACCTGATGAAAGCAAGCAATGCTCA
5521 GTTCCCATCAACATTTCTAGTTAGGGGGATTCTCATAACCCCACAGTTTACCTGAGAAAGTTTTCTGTGTTAGAAGAATG
5601 GGGTCGAGAGTATTACCTTTTAGCTCAGTGTGGCCGGGCCTTTTGTTGCAGTCAAATGGCAAATACGCACTCCTTGAAAT
5681 GGCTTCTTTTATTTGGTTTTGTTTTCTTAGACTTATAAATTTGAAAAGAATGCAATTTAAAAAGTGATTTCTCACAAAGA
5761 GTAAATATGCCTTTTGCAAATCAATTTTTGTAACAAGTTATTTATATGATATTACTTAATAAACTGGTTTTTTTCTAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' gaggucccggcuGGUGGGGUu 5'
                      |||||||| 
Target 5' ctcacttccttcCCACCCCAc 3'
 2657 - 2677 145.00 -17.10
2 
miRNA  3' gaGGUC-CCGGCUG--GUGGGGUu 5'
            |::| | :: ||  |||:||| 
Target 5' tcCTGGTGTTTTACTACACTCCAt 3'
 303 - 326 129.00 -15.00
3 
miRNA  3' gaggUCCCGGCUGGUGGGGUu 5'
              ||  ::|:||||| || 
Target 5' ttaaAGTTTTGGCCACCACAt 3'
 781 - 801 125.00 -14.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30501757 3 COSMIC
COSN30651126 15 COSMIC
COSN5603705 15 COSMIC
COSN20124337 16 COSMIC
COSN30466732 23 COSMIC
COSN31959944 28 COSMIC
COSN30470857 29 COSMIC
COSN26970080 51 COSMIC
COSN28839655 51 COSMIC
COSN26970079 57 COSMIC
COSN19656002 65 COSMIC
COSN30535844 69 COSMIC
COSN30535843 70 COSMIC
COSN5075801 77 COSMIC
COSN26970078 78 COSMIC
COSN30471236 78 COSMIC
COSN6511526 91 COSMIC
COSN30117514 101 COSMIC
COSN18729957 102 COSMIC
COSN30186288 102 COSMIC
COSN30466599 106 COSMIC
COSN30489538 111 COSMIC
COSN30485034 112 COSMIC
COSN30185953 136 COSMIC
COSN30184683 137 COSMIC
COSN30185943 137 COSMIC
COSN30145270 149 COSMIC
COSN23051499 177 COSMIC
COSN20101063 709 COSMIC
COSN8223792 809 COSMIC
COSN9432434 967 COSMIC
COSN16762503 1217 COSMIC
COSN19550626 1493 COSMIC
COSN20101068 1627 COSMIC
COSN17076206 1726 COSMIC
COSN31778455 2041 COSMIC
COSN5603706 2811 COSMIC
COSN20687887 2927 COSMIC
COSN7937536 2928 COSMIC
COSN6293961 3223 COSMIC
COSN25906831 3234 COSMIC
COSN29863735 3264 COSMIC
COSN18804152 3278 COSMIC
COSN29415880 3353 COSMIC
COSN27895742 3368 COSMIC
COSN18897258 3373 COSMIC
COSN9308628 3593 COSMIC
COSN16619236 3623 COSMIC
COSN25040852 3717 COSMIC
COSN29962985 3873 COSMIC
COSN4946729 3976 COSMIC
COSN26272582 4476 COSMIC
COSN2102241 4603 COSMIC
COSN5864008 4708 COSMIC
COSN16995662 4709 COSMIC
COSN21465121 4996 COSMIC
COSN25434835 5168 COSMIC
COSN32187617 5234 COSMIC
COSN19567307 5378 COSMIC
COSN22323590 5616 COSMIC
COSN15711792 5725 COSMIC
COSN5075803 5801 COSMIC
COSN23444855 5805 COSMIC
COSN21599428 5828 COSMIC
COSN23116537 5835 COSMIC
COSN6293962 5838 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1391141997 2 dbSNP
rs1401414619 6 dbSNP
rs1446227514 9 dbSNP
rs767142053 10 dbSNP
rs1380409124 13 dbSNP
rs752405208 16 dbSNP
rs755649741 22 dbSNP
rs777451395 24 dbSNP
rs750944496 25 dbSNP
rs1373010112 28 dbSNP
rs781609295 29 dbSNP
rs147369653 38 dbSNP
rs1207649000 40 dbSNP
rs747466753 41 dbSNP
rs1483493820 53 dbSNP
rs1376254508 54 dbSNP
rs921875240 64 dbSNP
rs1432883059 72 dbSNP
rs931873907 73 dbSNP
rs987363163 76 dbSNP
rs1356931507 78 dbSNP
rs916388659 79 dbSNP
rs1248124864 80 dbSNP
rs1183338471 87 dbSNP
rs1485878901 89 dbSNP
rs911721430 93 dbSNP
rs1355217887 99 dbSNP
rs539501825 101 dbSNP
rs758679211 102 dbSNP
rs969250102 103 dbSNP
rs1260841501 106 dbSNP
rs1240355862 107 dbSNP
rs552706984 111 dbSNP
rs770187747 123 dbSNP
rs1416941278 127 dbSNP
rs1356523055 128 dbSNP
rs747042073 133 dbSNP
rs572768022 147 dbSNP
rs1413241188 150 dbSNP
rs1362508784 160 dbSNP
rs1159270845 163 dbSNP
rs1361924051 163 dbSNP
rs927894177 164 dbSNP
rs1231869654 178 dbSNP
rs773546589 180 dbSNP
rs935272539 182 dbSNP
rs1178510409 201 dbSNP
rs899226412 202 dbSNP
rs1240902894 217 dbSNP
rs541726378 220 dbSNP
rs930671156 230 dbSNP
rs1045023807 235 dbSNP
rs905490725 237 dbSNP
rs1163379012 241 dbSNP
rs1004194292 242 dbSNP
rs1335906121 243 dbSNP
rs1293105114 245 dbSNP
rs1231662456 250 dbSNP
rs1053089533 255 dbSNP
rs1386378896 257 dbSNP
rs768647435 271 dbSNP
rs1381661159 283 dbSNP
rs535839694 287 dbSNP
rs1043171198 290 dbSNP
rs182517649 294 dbSNP
rs770248604 299 dbSNP
rs1052399121 300 dbSNP
rs773776090 309 dbSNP
rs1380890558 315 dbSNP
rs1192047780 316 dbSNP
rs978447647 327 dbSNP
rs1444768341 333 dbSNP
rs1005572160 334 dbSNP
rs867674766 338 dbSNP
rs1216064567 342 dbSNP
rs1469345836 344 dbSNP
rs1014521557 352 dbSNP
rs1273132807 364 dbSNP
rs963030995 365 dbSNP
rs759247413 379 dbSNP
rs1212168523 381 dbSNP
rs28643344 382 dbSNP
rs187648094 395 dbSNP
rs987796195 398 dbSNP
rs1023336416 402 dbSNP
rs1441759849 410 dbSNP
rs1323807406 413 dbSNP
rs1393582897 413 dbSNP
rs1381234799 415 dbSNP
rs962198752 416 dbSNP
rs1272206588 428 dbSNP
rs139104709 429 dbSNP
rs1206039636 434 dbSNP
rs1474246058 445 dbSNP
rs149492051 447 dbSNP
rs1460627900 449 dbSNP
rs1193661224 450 dbSNP
rs540693198 462 dbSNP
rs920700053 463 dbSNP
rs930724805 468 dbSNP
rs1212431186 477 dbSNP
rs1183349683 478 dbSNP
rs981952635 479 dbSNP
rs549307603 483 dbSNP
rs1185228136 487 dbSNP
rs1195417976 488 dbSNP
rs927808569 500 dbSNP
rs956624646 505 dbSNP
rs560288734 526 dbSNP
rs988068581 536 dbSNP
rs565934047 537 dbSNP
rs1301147503 541 dbSNP
rs913201356 544 dbSNP
rs947372917 546 dbSNP
rs1327992548 548 dbSNP
rs1408025069 556 dbSNP
rs1043118627 564 dbSNP
rs939329547 572 dbSNP
rs1172953344 573 dbSNP
rs191955990 581 dbSNP
rs1404153827 582 dbSNP
rs1471469257 583 dbSNP
rs1233985777 600 dbSNP
rs778028523 611 dbSNP
rs1469534266 615 dbSNP
rs932088305 616 dbSNP
rs1278339827 618 dbSNP
rs1051921181 626 dbSNP
rs58612348 630 dbSNP
rs940920151 633 dbSNP
rs1278921370 635 dbSNP
rs1439669864 644 dbSNP
rs1009767180 649 dbSNP
rs1362612857 651 dbSNP
rs1219900958 655 dbSNP
rs1160587724 657 dbSNP
rs1400809055 662 dbSNP
rs1280871227 664 dbSNP
rs1036583760 667 dbSNP
rs374226233 671 dbSNP
rs1322388511 674 dbSNP
rs1043899525 679 dbSNP
rs576735382 690 dbSNP
rs1203983097 695 dbSNP
rs994451754 699 dbSNP
rs549387647 701 dbSNP
rs57471923 702 dbSNP
rs1217992709 706 dbSNP
rs34871792 706 dbSNP
rs397810657 706 dbSNP
rs200532360 709 dbSNP
rs953179999 709 dbSNP
rs1222069422 711 dbSNP
rs1336635069 719 dbSNP
rs1293732756 722 dbSNP
rs1232477993 723 dbSNP
rs1353133773 731 dbSNP
rs1290267414 732 dbSNP
rs1003721589 736 dbSNP
rs1430745871 742 dbSNP
rs1034830193 751 dbSNP
rs56673271 757 dbSNP
rs1420451263 759 dbSNP
rs1166045440 760 dbSNP
rs1195918475 766 dbSNP
rs3805527 774 dbSNP
rs1480152702 775 dbSNP
rs1188520498 780 dbSNP
rs971908875 780 dbSNP
rs1241634371 787 dbSNP
rs544840269 793 dbSNP
rs1273766924 802 dbSNP
rs1212762699 803 dbSNP
rs951846856 809 dbSNP
rs967991176 810 dbSNP
rs978746767 811 dbSNP
rs921951531 815 dbSNP
rs539183102 830 dbSNP
rs1267953687 842 dbSNP
rs932063323 846 dbSNP
rs187551446 848 dbSNP
rs1300744734 857 dbSNP
rs1397275257 858 dbSNP
rs1327169459 860 dbSNP
rs1461202299 870 dbSNP
rs987975811 873 dbSNP
rs1172760844 875 dbSNP
rs771250266 875 dbSNP
rs926706818 885 dbSNP
rs1186707255 886 dbSNP
rs1455642401 899 dbSNP
rs1192991260 907 dbSNP
rs1253479944 907 dbSNP
rs912032560 909 dbSNP
rs1487378584 912 dbSNP
rs1252898828 914 dbSNP
rs1344255148 928 dbSNP
rs1306513558 934 dbSNP
rs1223609252 936 dbSNP
rs939363552 941 dbSNP
rs1235767606 946 dbSNP
rs1056457829 952 dbSNP
rs778308780 953 dbSNP
rs940867616 954 dbSNP
rs945609161 963 dbSNP
rs1365898747 968 dbSNP
rs566355897 980 dbSNP
rs899409355 985 dbSNP
rs1462842376 987 dbSNP
rs373901642 995 dbSNP
rs1222397553 996 dbSNP
rs1395836793 998 dbSNP
rs1172906581 1005 dbSNP
rs1044711150 1007 dbSNP
rs1252609866 1013 dbSNP
rs1177532178 1020 dbSNP
rs1480190077 1029 dbSNP
rs192025965 1032 dbSNP
rs904031862 1032 dbSNP
rs1003259773 1034 dbSNP
rs1230462641 1037 dbSNP
rs554940414 1039 dbSNP
rs1050612596 1043 dbSNP
rs892260765 1046 dbSNP
rs1267394639 1047 dbSNP
rs182758350 1056 dbSNP
rs1373125601 1059 dbSNP
rs1009000379 1063 dbSNP
rs1199714737 1065 dbSNP
rs1416895806 1067 dbSNP
rs1376125643 1068 dbSNP
rs1312302181 1069 dbSNP
rs544067626 1072 dbSNP
rs1464640106 1074 dbSNP
rs1018609341 1087 dbSNP
rs962303482 1089 dbSNP
rs1418273719 1090 dbSNP
rs187097091 1093 dbSNP
rs192791769 1095 dbSNP
rs1379558550 1097 dbSNP
rs1189595819 1098 dbSNP
rs1485765967 1111 dbSNP
rs765004782 1122 dbSNP
rs1027487955 1134 dbSNP
rs1408531433 1135 dbSNP
rs74988385 1137 dbSNP
rs1262999714 1141 dbSNP
rs967939779 1143 dbSNP
rs975347932 1154 dbSNP
rs184325068 1158 dbSNP
rs1286902283 1167 dbSNP
rs953513963 1169 dbSNP
rs1235559466 1170 dbSNP
rs1356298161 1176 dbSNP
rs189258606 1178 dbSNP
rs1394306223 1182 dbSNP
rs911953972 1194 dbSNP
rs1404993581 1195 dbSNP
rs1387308000 1202 dbSNP
rs1221534773 1206 dbSNP
rs1453020935 1210 dbSNP
rs371538491 1218 dbSNP
rs1166776509 1219 dbSNP
rs1475415130 1226 dbSNP
rs1416638075 1237 dbSNP
rs972186720 1239 dbSNP
rs1185030536 1257 dbSNP
rs1429765630 1257 dbSNP
rs992610155 1261 dbSNP
rs920780069 1263 dbSNP
rs913897527 1266 dbSNP
rs930867454 1277 dbSNP
rs1215876952 1280 dbSNP
rs1335936077 1283 dbSNP
rs1283805767 1284 dbSNP
rs149986961 1284 dbSNP
rs1296324605 1287 dbSNP
rs925495702 1290 dbSNP
rs371309033 1296 dbSNP
rs1362860998 1297 dbSNP
rs1327859133 1314 dbSNP
rs1312675313 1315 dbSNP
rs1045732018 1316 dbSNP
rs758195398 1323 dbSNP
rs1242793688 1329 dbSNP
rs926270122 1354 dbSNP
rs939012057 1355 dbSNP
rs1191800609 1363 dbSNP
rs1056167813 1372 dbSNP
rs892207078 1382 dbSNP
rs1009344252 1387 dbSNP
rs1447138963 1401 dbSNP
rs932833172 1402 dbSNP
rs1049900712 1407 dbSNP
rs1469186196 1409 dbSNP
rs562851642 1422 dbSNP
rs1043556531 1430 dbSNP
rs888902888 1447 dbSNP
rs903703238 1448 dbSNP
rs1208268714 1451 dbSNP
rs1252113712 1452 dbSNP
rs1210486487 1455 dbSNP
rs944463738 1457 dbSNP
rs1040493396 1458 dbSNP
rs996743893 1471 dbSNP
rs193107542 1472 dbSNP
rs1239034958 1480 dbSNP
rs78598441 1481 dbSNP
rs1321280710 1482 dbSNP
rs887683683 1489 dbSNP
rs1396690000 1493 dbSNP
rs1009297889 1499 dbSNP
rs780207786 1505 dbSNP
rs747216629 1506 dbSNP
rs1396431074 1515 dbSNP
rs1002470842 1528 dbSNP
rs1176045698 1541 dbSNP
rs1455123988 1546 dbSNP
rs1246667043 1549 dbSNP
rs1197118570 1565 dbSNP
rs114482929 1566 dbSNP
rs920727770 1569 dbSNP
rs527847995 1571 dbSNP
rs952215765 1576 dbSNP
rs981001429 1577 dbSNP
rs926859668 1582 dbSNP
rs939648627 1585 dbSNP
rs1235142014 1586 dbSNP
rs1344169857 1591 dbSNP
rs781165350 1593 dbSNP
rs1240853832 1599 dbSNP
rs75394658 1601 dbSNP
rs1307022076 1608 dbSNP
rs184571502 1609 dbSNP
rs144881660 1615 dbSNP
rs749353295 1615 dbSNP
rs779074189 1615 dbSNP
rs1449427547 1617 dbSNP
rs528907090 1618 dbSNP
rs903652345 1622 dbSNP
rs548604224 1625 dbSNP
rs770477866 1631 dbSNP
rs1246259976 1638 dbSNP
rs997084020 1639 dbSNP
rs1049608882 1646 dbSNP
rs1337468023 1648 dbSNP
rs1259909551 1653 dbSNP
rs509963 1675 dbSNP
rs537751221 1695 dbSNP
rs1276401648 1706 dbSNP
rs1459296042 1707 dbSNP
rs557989614 1713 dbSNP
rs577849750 1722 dbSNP
rs962025349 1724 dbSNP
rs542202360 1729 dbSNP
rs993503124 1733 dbSNP
rs62350377 1734 dbSNP
rs1287548094 1741 dbSNP
rs1189461220 1757 dbSNP
rs952196974 1790 dbSNP
rs531280479 1791 dbSNP
rs981336046 1794 dbSNP
rs1446630138 1795 dbSNP
rs929003614 1802 dbSNP
rs1332736666 1806 dbSNP
rs1048692849 1813 dbSNP
rs189019850 1814 dbSNP
rs1158834751 1815 dbSNP
rs1471818875 1820 dbSNP
rs1002121526 1821 dbSNP
rs1182721499 1830 dbSNP
rs1472507117 1839 dbSNP
rs961223456 1842 dbSNP
rs992437299 1850 dbSNP
rs551166269 1859 dbSNP
rs913537920 1860 dbSNP
rs1405728891 1861 dbSNP
rs1396990954 1862 dbSNP
rs1315383954 1865 dbSNP
rs1267464204 1870 dbSNP
rs1206524406 1878 dbSNP
rs1033982015 1880 dbSNP
rs553660960 1883 dbSNP
rs1325234793 1888 dbSNP
rs1271380178 1889 dbSNP
rs945028536 1903 dbSNP
rs574217615 1909 dbSNP
rs979133479 1914 dbSNP
rs896324063 1915 dbSNP
rs925018353 1918 dbSNP
rs749632927 1921 dbSNP
rs1013807497 1923 dbSNP
rs1405044620 1925 dbSNP
rs113929647 1932 dbSNP
rs543113148 1937 dbSNP
rs571070013 1948 dbSNP
rs372838113 1965 dbSNP
rs562894232 1967 dbSNP
rs1450176439 1970 dbSNP
rs879034350 1974 dbSNP
rs1050000352 1982 dbSNP
rs1201931960 1986 dbSNP
rs576461413 1992 dbSNP
rs943917295 2003 dbSNP
rs1036911784 2004 dbSNP
rs1220583604 2004 dbSNP
rs1265861695 2004 dbSNP
rs897116957 2005 dbSNP
rs1214588816 2008 dbSNP
rs1274679403 2008 dbSNP
rs993450948 2010 dbSNP
rs1262767017 2013 dbSNP
rs1166612012 2014 dbSNP
rs1278435227 2014 dbSNP
rs1433578220 2014 dbSNP
rs1455496189 2014 dbSNP
rs200998266 2014 dbSNP
rs201058966 2014 dbSNP
rs201545389 2014 dbSNP
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rs70955705 2014 dbSNP
rs771780789 2014 dbSNP
rs772413321 2014 dbSNP
rs774408113 2014 dbSNP
rs1268007737 2016 dbSNP
rs868119937 2018 dbSNP
rs1483425854 2020 dbSNP
rs796197903 2021 dbSNP
rs113462081 2022 dbSNP
rs866220531 2024 dbSNP
rs1002311582 2026 dbSNP
rs111909761 2030 dbSNP
rs181458331 2034 dbSNP
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rs1429583493 5052 dbSNP
rs1175061429 5062 dbSNP
rs1369281759 5063 dbSNP
rs1463147915 5065 dbSNP
rs1423679198 5068 dbSNP
rs1470806218 5071 dbSNP
rs878911982 5073 dbSNP
rs901810495 5077 dbSNP
rs1197174167 5079 dbSNP
rs1462782345 5081 dbSNP
rs908220635 5102 dbSNP
rs998125495 5103 dbSNP
rs939665969 5105 dbSNP
rs1224209544 5107 dbSNP
rs553512860 5110 dbSNP
rs191164745 5111 dbSNP
rs1029649262 5116 dbSNP
rs531316138 5129 dbSNP
rs1335753446 5130 dbSNP
rs1004319632 5133 dbSNP
rs541094360 5142 dbSNP
rs1159203071 5144 dbSNP
rs560889427 5148 dbSNP
rs772772419 5150 dbSNP
rs1336302057 5158 dbSNP
rs1216477291 5165 dbSNP
rs114547257 5168 dbSNP
rs1023220334 5169 dbSNP
rs141678556 5173 dbSNP
rs971662815 5177 dbSNP
rs981089377 5178 dbSNP
rs1199620793 5179 dbSNP
rs1262531318 5181 dbSNP
rs776652296 5197 dbSNP
rs1352871524 5198 dbSNP
rs1283849411 5199 dbSNP
rs1235123791 5203 dbSNP
rs1383329110 5207 dbSNP
rs1314125404 5209 dbSNP
rs150548752 5211 dbSNP
rs1482529103 5216 dbSNP
rs1181356923 5221 dbSNP
rs934373016 5236 dbSNP
rs1452485671 5243 dbSNP
rs762863504 5248 dbSNP
rs1021901131 5252 dbSNP
rs77481418 5253 dbSNP
rs1370006853 5256 dbSNP
rs1427129228 5257 dbSNP
rs1423140554 5263 dbSNP
rs1465969853 5272 dbSNP
rs1164558412 5275 dbSNP
rs1422239978 5278 dbSNP
rs184797451 5279 dbSNP
rs1357365968 5280 dbSNP
rs923441145 5296 dbSNP
rs1360075933 5304 dbSNP
rs914354618 5306 dbSNP
rs986531485 5311 dbSNP
rs1308867576 5313 dbSNP
rs1295895290 5322 dbSNP
rs1303347820 5328 dbSNP
rs1398840166 5342 dbSNP
rs74833812 5347 dbSNP
rs1039305380 5349 dbSNP
rs1407256145 5365 dbSNP
rs1366763828 5372 dbSNP
rs1293286369 5374 dbSNP
rs1456749260 5388 dbSNP
rs1374999387 5389 dbSNP
rs1397554902 5391 dbSNP
rs923179065 5411 dbSNP
rs1477624957 5412 dbSNP
rs770715668 5421 dbSNP
rs919895018 5431 dbSNP
rs187706491 5438 dbSNP
rs1044287517 5439 dbSNP
rs897989055 5442 dbSNP
rs887113629 5443 dbSNP
rs548227536 5449 dbSNP
rs1251512705 5451 dbSNP
rs1038446617 5454 dbSNP
rs1049287945 5455 dbSNP
rs887510584 5463 dbSNP
rs1011616403 5464 dbSNP
rs898613264 5468 dbSNP
rs1323558415 5471 dbSNP
rs1022035499 5473 dbSNP
rs761572344 5474 dbSNP
rs996834323 5476 dbSNP
rs1465260774 5481 dbSNP
rs1030517214 5501 dbSNP
rs1178651002 5503 dbSNP
rs568126611 5504 dbSNP
rs1013066654 5509 dbSNP
rs530857308 5521 dbSNP
rs983571872 5529 dbSNP
rs1196739181 5534 dbSNP
rs1023166365 5535 dbSNP
rs1250925145 5541 dbSNP
rs1015321723 5545 dbSNP
rs564989632 5546 dbSNP
rs571089217 5547 dbSNP
rs919596414 5548 dbSNP
rs75695676 5552 dbSNP
rs955738199 5553 dbSNP
rs1231625227 5556 dbSNP
rs1338078710 5560 dbSNP
rs751771540 5566 dbSNP
rs1310385923 5578 dbSNP
rs1176757602 5582 dbSNP
rs1377155287 5593 dbSNP
rs1446572960 5597 dbSNP
rs192263519 5606 dbSNP
rs567042435 5607 dbSNP
rs1415093950 5627 dbSNP
rs534711029 5630 dbSNP
rs1170927411 5633 dbSNP
rs1455242188 5635 dbSNP
rs138248975 5636 dbSNP
rs755208817 5637 dbSNP
rs1244585149 5639 dbSNP
rs1365988248 5649 dbSNP
rs574581194 5652 dbSNP
rs1441492614 5661 dbSNP
rs767680586 5665 dbSNP
rs1281700751 5667 dbSNP
rs1350614868 5668 dbSNP
rs1047646127 5669 dbSNP
rs1226341802 5671 dbSNP
rs761045632 5679 dbSNP
rs1239865838 5680 dbSNP
rs1375216483 5681 dbSNP
rs142970431 5684 dbSNP
rs1448943008 5689 dbSNP
rs1340122077 5700 dbSNP
rs1332249116 5703 dbSNP
rs1285489658 5706 dbSNP
rs940033740 5717 dbSNP
rs1447644473 5722 dbSNP
rs184324494 5729 dbSNP
rs898565941 5734 dbSNP
rs190056021 5739 dbSNP
rs890690642 5753 dbSNP
rs1235428400 5755 dbSNP
rs1194652762 5760 dbSNP
rs1477592884 5763 dbSNP
rs546048961 5764 dbSNP
rs1396827343 5767 dbSNP
rs1294343619 5769 dbSNP
rs1015040182 5776 dbSNP
rs765624363 5783 dbSNP
rs974235497 5795 dbSNP
rs1026703856 5805 dbSNP
rs1398030627 5806 dbSNP
rs547533900 5806 dbSNP
rs1367392967 5807 dbSNP
rs867815668 5810 dbSNP
rs1031917789 5824 dbSNP
rs928574769 5825 dbSNP
rs1401914757 5827 dbSNP
rs181321838 5828 dbSNP
rs988691826 5828 dbSNP
rs1190911915 5835 dbSNP
rs1321217679 5835 dbSNP
rs1487582620 5837 dbSNP
rs1249010833 5839 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' gaggucccggcuGGUGGGGUu 5'
                      |||||||| 
Target 5' -----uuccuucCCACCCCAc 3'
 		1 - 16
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000265071.2 | 3UTR | UUCCUUCCCACCCCACCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
67 hsa-miR-6737-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT066215 MARCH9 membrane associated ring-CH-type finger 9 2 2
MIRT074413 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT125300 MID1IP1 MID1 interacting protein 1 2 2
MIRT153951 NCOA3 nuclear receptor coactivator 3 2 2
MIRT452776 FAM136A family with sequence similarity 136 member A 2 2
MIRT452977 CABP4 calcium binding protein 4 2 2
MIRT454128 FOXRED2 FAD dependent oxidoreductase domain containing 2 2 2
MIRT455242 DDX39B DExD-box helicase 39B 2 10
MIRT459007 UQCRH ubiquinol-cytochrome c reductase hinge protein 2 2
MIRT459463 MUC17 mucin 17, cell surface associated 2 4
MIRT460871 UBE2S ubiquitin conjugating enzyme E2 S 2 2
MIRT461264 COX10 COX10, heme A:farnesyltransferase cytochrome c oxidase assembly factor 2 2
MIRT464540 UBTF upstream binding transcription factor, RNA polymerase I 2 2
MIRT465268 TRIM28 tripartite motif containing 28 2 2
MIRT465871 TMEM43 transmembrane protein 43 2 4
MIRT466228 TMED10 transmembrane p24 trafficking protein 10 2 2
MIRT468417 SETD1B SET domain containing 1B 2 2
MIRT468684 SEC22C SEC22 homolog C, vesicle trafficking protein 2 4
MIRT473399 MDM4 MDM4, p53 regulator 2 2
MIRT473517 MAX MYC associated factor X 2 2
MIRT474511 KLHDC8A kelch domain containing 8A 2 2
MIRT475801 HDGF heparin binding growth factor 2 2
MIRT479493 CDH6 cadherin 6 2 2
MIRT480770 BMP2 bone morphogenetic protein 2 2 2
MIRT481418 ASB6 ankyrin repeat and SOCS box containing 6 2 2
MIRT482966 CSTF2 cleavage stimulation factor subunit 2 2 2
MIRT483380 SPATA6 spermatogenesis associated 6 2 4
MIRT483677 CYP11A1 cytochrome P450 family 11 subfamily A member 1 2 2
MIRT484328 EPN1 epsin 1 2 4
MIRT484963 UCK1 uridine-cytidine kinase 1 2 2
MIRT485908 PGPEP1 pyroglutamyl-peptidase I 2 4
MIRT488149 PRRC2B proline rich coiled-coil 2B 2 4
MIRT488943 CYP2W1 cytochrome P450 family 2 subfamily W member 1 2 6
MIRT491835 ZBTB7A zinc finger and BTB domain containing 7A 2 4
MIRT493026 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 2
MIRT499374 PLCG2 phospholipase C gamma 2 2 11
MIRT499723 USH1G USH1 protein network component sans 2 4
MIRT500349 ZNF385A zinc finger protein 385A 2 2
MIRT509574 HIST2H2AB histone cluster 2 H2A family member b 2 4
MIRT512794 GLRX glutaredoxin 2 2
MIRT513291 SETBP1 SET binding protein 1 2 2
MIRT515697 ZNF321P zinc finger protein 321, pseudogene 2 2
MIRT518255 LEAP2 liver enriched antimicrobial peptide 2 2 2
MIRT522026 PAQR3 progestin and adipoQ receptor family member 3 2 4
MIRT523169 HIST3H3 histone cluster 3 H3 2 2
MIRT524036 DNAJC8 DnaJ heat shock protein family (Hsp40) member C8 2 2
MIRT533476 TRIM71 tripartite motif containing 71 2 2
MIRT541488 ADM adrenomedullin 2 2
MIRT553987 SRPR SRP receptor alpha subunit 2 2
MIRT571445 YKT6 YKT6 v-SNARE homolog 2 2
MIRT574889 Plcg2 phospholipase C, gamma 2 2 7
MIRT607544 GLI2 GLI family zinc finger 2 2 2
MIRT607688 MAPK10 mitogen-activated protein kinase 10 2 2
MIRT610072 CRLF1 cytokine receptor like factor 1 2 2
MIRT610573 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT614041 THBS2 thrombospondin 2 2 2
MIRT626318 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT634005 RIF1 replication timing regulatory factor 1 2 2
MIRT639619 FGF19 fibroblast growth factor 19 2 2
MIRT647343 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT689704 ATXN2 ataxin 2 2 2
MIRT691170 APOL6 apolipoprotein L6 2 2
MIRT693165 NPR1 natriuretic peptide receptor 1 2 2
MIRT711727 NUPL2 nucleoporin like 2 2 2
MIRT711806 ELN elastin 2 2
MIRT721546 FXN frataxin 2 2
MIRT722979 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-6737 Ceritinib 57379345 NSC776422 approved sensitive High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-mir-6737 Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)
hsa-miR-6737-5p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-6737-5p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-6737-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-6737-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-6737-5p Paclitaxel 36314 NSC125973 approved resistant cell line (A2780)
hsa-miR-6737-5p Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)
hsa-miR-6737-5p Docetaxel+Cisplatin+5-Fluorouracil resistant tissue (hypopharyngeal squamous cell carcinoma)

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