miRTarBase - #MIRT480056


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pre-miRNA Information
pre-miRNA hsa-mir-3670-1   
Genomic Coordinates chr16: 14907717 - 14907781
Description Homo sapiens miR-3670-1 stem-loop
Comment None
RNA Secondary Structure
pre-miRNA hsa-mir-3670-2   
Genomic Coordinates chr16: 16306370 - 16306434
Description Homo sapiens miR-3670-2 stem-loop
Comment None
RNA Secondary Structure
pre-miRNA hsa-mir-3670-3   
Genomic Coordinates chr16: 18405698 - 18405762
Description Homo sapiens miR-3670-3 stem-loop
Comment None
RNA Secondary Structure
pre-miRNA hsa-mir-3670-4   
Genomic Coordinates chr16: 18488301 - 18488365
Description Homo sapiens miR-3670-4 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3670
Sequence 40| AGAGCUCACAGCUGUCCUUCUCUA |63
Evidence Experimental
Experiments Illumina
Putative Targets

Gene Information
Gene Symbol CAND1   
Synonyms TIP120, TIP120A
Description cullin associated and neddylation dissociated 1
Transcript NM_018448   
Expression
Putative miRNA Targets on CAND1
3'UTR of CAND1
(miRNA target sites are highlighted)		 
>CAND1|NM_018448|3'UTR
   1 ATGTTTGTTCACCATGGGGACCATTACATATGACCATACAATGCACTGAATTGACAGGTTAATCATAAGACATGGAAAGA
  81 GAAGTGTCTAAAAGCTTCAAAATGTTCCACTTTTTTTTCCTTCATGGAGACTGTTTGTTTGGCTTTCTTCCATTGTTGTT
 161 TTTGTAGCATTTATTTCAGAAATGTGTATTTCCATAATCCAGAGGTTGTAAAACCACTAGTGTTTTAGTGGTTACAGCAA
 241 CATTTGAAATGGAAACTAAAAGTTAGGATTTTATGGAGTATGGAGATAGGGTCCAGTATCTATTTACCCTGTAATGTTTA
 321 GGATTAAAATGTTAAAATTTTGTGACCATGAATTTCTTTCTTTTATAAATTTTCTCATTTAAAAATCAAAAATCTTGCAA
 401 AACAAAAACCATGTTTCTTTTTCTTGTATAACTTTTTGTTTTCAGCAACATAAATTGATTTTTAGCTGGCAGACAAGAAT
 481 ATCCATATAAGATTTGTTAACCATTTCAGAGAGTTTGGCAATTTTTAAAAGATAATAAGGTATCATTTTTAAGTATGAAA
 561 ATTAACAATATCCCTGTTGCGCACACTAATTTTGCATGAGTAAGTTTACAAATATGTATCGTCTGTAAAGCAGCATGTGC
 641 AGATTATTCATAATATAGAAGTTAAAATAAGTATTAGTGCAATTTTCAGATATTTATTTTTGCACAGAAAACACATTATC
 721 TGGAGAGAAAGAAAGGAGAATTTTTGAGACTTGGGTTTTCTTAATGCCAGTGTGAATTTGCAGATGTTTTCAGAAAATCA
 801 AGTCACAGTAACAATTTGCCACTTTTTTCTATTATAAATCTTCTTACTTAAATTTTGAATATTTAGTTTTTCTCAGTTAC
 881 CCATTTGTGTGTGTGTGATTCCACTTAGAAATTCTTAAAACCAGATTTTTCTTTCATTCCGTTTGGATGTCTACATTCCT
 961 TATCAAAGGATATAAATACTGTGTATGCTTTTGAATTTTATTTTTAGGAAAATTCTGAAGCCAGCTATCACAGGTTTGTT
1041 AGCTAATAATAGTATTTTCTTTTAGTTGAGTTAGGTTTTTCCCCATCTCCTGTAGAGCGAATTTACATATTGTATTGGGT
1121 AAGTGTTCACTACTTTTCCTGATTAAGGGATCTGTGCTGGGGAACAAAGCTTTTGCAGTACCTTATATTGTAGTTAAAAT
1201 TTTATTTAACATATCCTTCAGTGAGCTCATTTCACACTGTAGCCTCTTCCTTAAAATTTGTGGTGCTCCTGTAACAGTAA
1281 GAACTAATTCTGAAATAAAAGACATCTCCTAATGCTGTGCAAACATAGTTTACATGTATTGAAGGAGGCAGTTGTTAAAT
1361 TGAGTGACCAATTTAAGCAATCAGATATTTGAAAACTGCACCCTTTAGTTTTGAAACTGTGAATTAGAAACACTTTTCCT
1441 GCTGTATTACTACCTGCTTTAACATCCAAATATACAGTGATTTTAAATGATAACATACTGTGGTTATTAGATTAACAGCT
1521 TGATTTTGAATGTTCAGATGATAATGCAGAAGACATCACTTCTAGTAAGGATTTTGACTAGTGCATTGATGTTGAAGTTG
1601 GTGCCATTTCAAAATGTGGCAGGTGATAATCTTTTACCATAATTTGCATAAAACTGTAATAGAAGTTTATTTTGAGATGT
1681 TAGTATATTATGTACTATGCATTTCTGTGGTATAGATGTTGTGGATATATTTAAGTATTTGGTTACATGGTTTTACAATA
1761 AATTACAATACTGCAGGCTCTAGGACTGAACAGGAGACTGACATGCATATGTTGTGTGAATGTCTTAGTTGGGTAAAGTT
1841 AAATCCAAATACTTCAACTGGCAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' aucucuuccugucGACACUCGAGa 5'
                       | |||||||| 
Target 5' ttaacatatccttCAGTGAGCTCa 3'
 1206 - 1229 147.00 -12.00
2 
miRNA  3' auCUCUUCCUGUC------GACACUC-GAGa 5'
            ||||| || ||      :| |||| ||: 
Target 5' gaGAGAAAGAAAGGAGAATTTTTGAGACTTg 3'
 723 - 753 116.00 -11.80
3 
miRNA  3' aucuCUUCCU--GUCGAC------ACUCGaga 5'
              ||||||  |||:||      ||||:   
Target 5' tattGAAGGAGGCAGTTGTTAAATTGAGTgac 3'
 1337 - 1368 112.00 -16.02
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN28419098 3 COSMIC
COSN30167538 20 COSMIC
COSN30505376 42 COSMIC
COSN30173945 49 COSMIC
COSN30189444 54 COSMIC
COSN30188893 57 COSMIC
COSN31598213 87 COSMIC
COSN30147839 103 COSMIC
COSN20123964 119 COSMIC
COSN31594527 119 COSMIC
COSN27234159 241 COSMIC
COSN31548025 520 COSMIC
COSN31585339 539 COSMIC
COSN31485073 732 COSMIC
COSN31530193 739 COSMIC
COSN31568020 830 COSMIC
COSN8586570 839 COSMIC
COSN9754227 875 COSMIC
COSN32137860 936 COSMIC
COSN30173898 966 COSMIC
COSN31540758 982 COSMIC
COSN15660874 1320 COSMIC
COSN5950633 1479 COSMIC
COSN15795844 1554 COSMIC
COSN5326351 1559 COSMIC
COSN21234698 1579 COSMIC
COSN24294686 1587 COSMIC
COSN25250185 1719 COSMIC
COSN1581993 1756 COSMIC
COSN22889853 1882 COSMIC
COSN9754228 2356 COSMIC
COSN32088299 2486 COSMIC
COSN17906893 2642 COSMIC
COSN29940109 2806 COSMIC
COSN24652799 2838 COSMIC
COSN23157284 2903 COSMIC
COSN21929031 2984 COSMIC
COSN20378489 3027 COSMIC
COSN29918281 3030 COSMIC
COSN21855390 3314 COSMIC
COSN27796743 3870 COSMIC
COSN17503878 3873 COSMIC
COSN20888638 4145 COSMIC
COSN5326352 4199 COSMIC
COSN19181239 4473 COSMIC
COSN23630771 5200 COSMIC
COSN16704757 5250 COSMIC
COSN8340054 5363 COSMIC
COSN20598511 5549 COSMIC
COSN20168107 5870 COSMIC
COSN15220423 6019 COSMIC
COSN17242610 6123 COSMIC
COSN9754229 6309 COSMIC
COSN1581994 6394 COSMIC
COSN27756402 6421 COSMIC
COSN1581995 6485 COSMIC
COSN22160517 6505 COSMIC
COSN21402148 6518 COSMIC
COSN16107797 6811 COSMIC
COSN9568484 7052 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs62617781 14 dbSNP
rs770664258 15 dbSNP
rs779122522 18 dbSNP
rs746155038 24 dbSNP
rs772268607 29 dbSNP
rs367652026 31 dbSNP
rs1347734613 32 dbSNP
rs747079003 33 dbSNP
rs1274631022 36 dbSNP
rs769072235 42 dbSNP
rs1202756391 51 dbSNP
rs1309451942 53 dbSNP
rs530914351 62 dbSNP
rs1219000781 66 dbSNP
rs995010018 72 dbSNP
rs949527533 73 dbSNP
rs568507392 76 dbSNP
rs1281226549 81 dbSNP
rs982339181 85 dbSNP
rs534577882 87 dbSNP
rs1297080750 91 dbSNP
rs1439616671 96 dbSNP
rs759334365 101 dbSNP
rs1332528054 105 dbSNP
rs1469554456 108 dbSNP
rs1427857053 109 dbSNP
rs1179153622 111 dbSNP
rs1434239935 118 dbSNP
rs1407403200 122 dbSNP
rs1175553255 125 dbSNP
rs10506543 126 dbSNP
rs1252461617 127 dbSNP
rs1481776256 128 dbSNP
rs1233611278 132 dbSNP
rs951067058 149 dbSNP
rs1199040635 153 dbSNP
rs1460674739 159 dbSNP
rs930035319 160 dbSNP
rs1225324131 195 dbSNP
rs537435678 195 dbSNP
rs1194474267 215 dbSNP
rs375314156 216 dbSNP
rs553251713 219 dbSNP
rs983456523 223 dbSNP
rs115047343 226 dbSNP
rs1039788614 231 dbSNP
rs1309480981 232 dbSNP
rs966129047 235 dbSNP
rs1200870824 240 dbSNP
rs1266143212 241 dbSNP
rs76730083 242 dbSNP
rs1171031539 278 dbSNP
rs569807552 279 dbSNP
rs1157032144 290 dbSNP
rs921726120 295 dbSNP
rs1041692934 299 dbSNP
rs1460234508 312 dbSNP
rs1183170387 317 dbSNP
rs935819380 334 dbSNP
rs776852895 336 dbSNP
rs762025325 346 dbSNP
rs1201953737 352 dbSNP
rs1054325889 353 dbSNP
rs1260012080 353 dbSNP
rs1213076070 354 dbSNP
rs1370117546 355 dbSNP
rs913140818 360 dbSNP
rs557242784 366 dbSNP
rs1309329322 369 dbSNP
rs1305251601 370 dbSNP
rs1317680070 381 dbSNP
rs538841190 393 dbSNP
rs575789314 396 dbSNP
rs1287588607 398 dbSNP
rs3208102 404 dbSNP
rs1455432036 409 dbSNP
rs765289018 409 dbSNP
rs1296876365 411 dbSNP
rs1423044328 413 dbSNP
rs750553582 425 dbSNP
rs558440876 427 dbSNP
rs898288385 429 dbSNP
rs1424137918 430 dbSNP
rs994956459 432 dbSNP
rs1027805384 449 dbSNP
rs886673255 451 dbSNP
rs1489214590 467 dbSNP
rs867856815 472 dbSNP
rs528745876 474 dbSNP
rs1005562390 484 dbSNP
rs1360697070 488 dbSNP
rs1221076657 489 dbSNP
rs180894276 495 dbSNP
rs1224233807 501 dbSNP
rs1013092242 503 dbSNP
rs184127173 504 dbSNP
rs200287722 507 dbSNP
rs1293854840 508 dbSNP
rs140051828 508 dbSNP
rs966445753 511 dbSNP
rs974782658 517 dbSNP
rs1341672263 522 dbSNP
rs11176679 524 dbSNP
rs957471633 532 dbSNP
rs1385622591 533 dbSNP
rs528509887 539 dbSNP
rs989965583 541 dbSNP
rs1372333070 543 dbSNP
rs1165675661 545 dbSNP
rs1363983947 546 dbSNP
rs913075646 553 dbSNP
rs1489616311 566 dbSNP
rs942689489 566 dbSNP
rs1289533352 567 dbSNP
rs776389734 569 dbSNP
rs540522827 574 dbSNP
rs190680828 581 dbSNP
rs11833252 582 dbSNP
rs1319227573 585 dbSNP
rs903124216 590 dbSNP
rs1221791520 597 dbSNP
rs1347525067 598 dbSNP
rs1324252514 599 dbSNP
rs1383958404 600 dbSNP
rs1248677673 601 dbSNP
rs1296255485 602 dbSNP
rs1000538120 616 dbSNP
rs1424288098 617 dbSNP
rs140978470 621 dbSNP
rs530503494 622 dbSNP
rs549076028 630 dbSNP
rs1198947942 634 dbSNP
rs1436918888 635 dbSNP
rs1261968741 636 dbSNP
rs1247906955 638 dbSNP
rs1200915484 643 dbSNP
rs898236078 644 dbSNP
rs1484641237 651 dbSNP
rs150228048 655 dbSNP
rs1024048568 656 dbSNP
rs534622543 659 dbSNP
rs1243720098 663 dbSNP
rs1311690219 664 dbSNP
rs1446192712 664 dbSNP
rs1049193871 668 dbSNP
rs1181551653 674 dbSNP
rs1400823919 678 dbSNP
rs1335802154 681 dbSNP
rs1468227986 689 dbSNP
rs1411820280 691 dbSNP
rs1404244975 693 dbSNP
rs1172666611 694 dbSNP
rs1423463246 711 dbSNP
rs1469119615 718 dbSNP
rs1160198342 726 dbSNP
rs1180180368 729 dbSNP
rs1365594946 733 dbSNP
rs1439892337 748 dbSNP
rs886616878 753 dbSNP
rs1455757518 754 dbSNP
rs1003698341 755 dbSNP
rs1204664189 769 dbSNP
rs552735620 771 dbSNP
rs1407512801 779 dbSNP
rs1026217099 786 dbSNP
rs1241198419 799 dbSNP
rs951557028 803 dbSNP
rs1314185808 805 dbSNP
rs534449045 814 dbSNP
rs759345314 815 dbSNP
rs910093540 816 dbSNP
rs1335146186 825 dbSNP
rs1137465 832 dbSNP
rs538965888 835 dbSNP
rs1159931508 836 dbSNP
rs902128832 844 dbSNP
rs1384162614 846 dbSNP
rs1182138350 849 dbSNP
rs1473956489 851 dbSNP
rs1238580904 852 dbSNP
rs922707854 872 dbSNP
rs1445743527 877 dbSNP
rs574141795 879 dbSNP
rs1041799292 884 dbSNP
rs924452770 890 dbSNP
rs1314578394 903 dbSNP
rs776826026 918 dbSNP
rs537187709 922 dbSNP
rs557177506 924 dbSNP
rs1226426711 931 dbSNP
rs1263625394 932 dbSNP
rs1284541935 936 dbSNP
rs1462605683 937 dbSNP
rs747794928 941 dbSNP
rs181776441 942 dbSNP
rs990246743 949 dbSNP
rs1299516094 953 dbSNP
rs575526453 956 dbSNP
rs967618714 964 dbSNP
rs981336855 967 dbSNP
rs1406720325 971 dbSNP
rs948424356 976 dbSNP
rs1167693907 980 dbSNP
rs1474745862 984 dbSNP
rs1265903838 988 dbSNP
rs1194478895 996 dbSNP
rs1490194588 1002 dbSNP
rs1045360572 1009 dbSNP
rs1177977266 1010 dbSNP
rs34752796 1015 dbSNP
rs906987193 1025 dbSNP
rs1290406253 1030 dbSNP
rs185954807 1032 dbSNP
rs1026036386 1034 dbSNP
rs1279977195 1036 dbSNP
rs1218735979 1039 dbSNP
rs1344376940 1050 dbSNP
rs777390714 1051 dbSNP
rs887283153 1062 dbSNP
rs1438250726 1066 dbSNP
rs928534219 1072 dbSNP
rs1491129615 1080 dbSNP
rs1491425639 1081 dbSNP
rs1328614406 1086 dbSNP
rs1005714467 1090 dbSNP
rs1471240077 1092 dbSNP
rs937286269 1093 dbSNP
rs190411041 1094 dbSNP
rs919608917 1098 dbSNP
rs931033265 1099 dbSNP
rs770378377 1100 dbSNP
rs1370752231 1102 dbSNP
rs1192980542 1107 dbSNP
rs886904196 1108 dbSNP
rs1283376927 1110 dbSNP
rs940849226 1111 dbSNP
rs774295016 1113 dbSNP
rs1040578083 1114 dbSNP
rs555050212 1115 dbSNP
rs76825660 1125 dbSNP
rs1199240144 1130 dbSNP
rs1322722448 1133 dbSNP
rs1298629489 1135 dbSNP
rs1220392385 1150 dbSNP
rs369258890 1153 dbSNP
rs1367868339 1165 dbSNP
rs1278549809 1167 dbSNP
rs1445056034 1170 dbSNP
rs1402966192 1186 dbSNP
rs1332423549 1187 dbSNP
rs1469792985 1193 dbSNP
rs977509007 1202 dbSNP
rs1178330588 1203 dbSNP
rs924681807 1206 dbSNP
rs1407565052 1212 dbSNP
rs1177062379 1218 dbSNP
rs1277894275 1236 dbSNP
rs1441747021 1243 dbSNP
rs1239853007 1247 dbSNP
rs1179005692 1251 dbSNP
rs775231941 1267 dbSNP
rs1254100635 1272 dbSNP
rs1312211436 1274 dbSNP
rs762654241 1276 dbSNP
rs996450290 1311 dbSNP
rs989992540 1325 dbSNP
rs1310467492 1328 dbSNP
rs1452289904 1332 dbSNP
rs1050390041 1333 dbSNP
rs1234770596 1338 dbSNP
rs1377663765 1340 dbSNP
rs1305063421 1346 dbSNP
rs893150480 1348 dbSNP
rs1482205362 1349 dbSNP
rs1156930715 1350 dbSNP
rs1181815566 1361 dbSNP
rs745804595 1366 dbSNP
rs771832225 1371 dbSNP
rs1254022412 1374 dbSNP
rs1183577512 1379 dbSNP
rs1483517738 1384 dbSNP
rs1261920833 1393 dbSNP
rs1269679086 1398 dbSNP
rs763598318 1403 dbSNP
rs1481487205 1406 dbSNP
rs915843097 1418 dbSNP
rs1245729600 1426 dbSNP
rs573112734 1434 dbSNP
rs948624224 1442 dbSNP
rs1045602434 1457 dbSNP
rs139156280 1483 dbSNP
rs1173001341 1490 dbSNP
rs1020784691 1491 dbSNP
rs1296432672 1496 dbSNP
rs1401846859 1496 dbSNP
rs1368243490 1500 dbSNP
rs967521931 1504 dbSNP
rs1303446756 1511 dbSNP
rs1456563668 1517 dbSNP
rs1003105704 1525 dbSNP
rs1433730730 1531 dbSNP
rs1424344352 1533 dbSNP
rs1035550522 1536 dbSNP
rs769290750 1544 dbSNP
rs1190915197 1547 dbSNP
rs958590436 1554 dbSNP
rs991376401 1561 dbSNP
rs1047973737 1563 dbSNP
rs919557422 1567 dbSNP
rs373474760 1569 dbSNP
rs1487300625 1570 dbSNP
rs1267668655 1572 dbSNP
rs1006159813 1580 dbSNP
rs952382231 1584 dbSNP
rs1270628958 1586 dbSNP
rs775322655 1591 dbSNP
rs142967353 1593 dbSNP
rs943828025 1601 dbSNP
rs1040920942 1602 dbSNP
rs1302593433 1607 dbSNP
rs11176680 1623 dbSNP
rs1490848761 1624 dbSNP
rs953484076 1625 dbSNP
rs1385374686 1628 dbSNP
rs1393126465 1630 dbSNP
rs544535075 1637 dbSNP
rs1246573105 1655 dbSNP
rs762002628 1657 dbSNP
rs562705202 1661 dbSNP
rs74768056 1673 dbSNP
rs765483639 1680 dbSNP
rs1050668708 1686 dbSNP
rs1476027796 1691 dbSNP
rs530250686 1692 dbSNP
rs1188874944 1693 dbSNP
rs1011983364 1700 dbSNP
rs1478746531 1704 dbSNP
rs548755131 1713 dbSNP
rs557757853 1717 dbSNP
rs1431110654 1732 dbSNP
rs1002976008 1740 dbSNP
rs1210840782 1742 dbSNP
rs1449297496 1748 dbSNP
rs1163796602 1757 dbSNP
rs1256533213 1769 dbSNP
rs1201116378 1776 dbSNP
rs1035900968 1788 dbSNP
rs762975620 1789 dbSNP
rs1274395271 1791 dbSNP
rs1231086069 1792 dbSNP
rs1032208302 1802 dbSNP
rs958537128 1803 dbSNP
rs879880597 1808 dbSNP
rs74100325 1812 dbSNP
rs1329044512 1815 dbSNP
rs752040320 1824 dbSNP
rs952661229 1826 dbSNP
rs1400873216 1846 dbSNP
rs1432792075 1848 dbSNP
rs969838345 1854 dbSNP
rs368986664 1859 dbSNP
rs1295377103 1862 dbSNP
rs755506836 1863 dbSNP
rs928516926 1868 dbSNP
rs1236804193 1873 dbSNP
rs929006852 1878 dbSNP
rs1458616104 1882 dbSNP
rs1364155479 1891 dbSNP
rs113978643 1894 dbSNP
rs1315936434 1902 dbSNP
rs976536703 1908 dbSNP
rs1256633628 1909 dbSNP
rs1239783322 1910 dbSNP
rs1374942601 1912 dbSNP
rs767907042 1915 dbSNP
rs577432631 1917 dbSNP
rs1448638594 1920 dbSNP
rs1336306733 1925 dbSNP
rs932134802 1927 dbSNP
rs1358751848 1928 dbSNP
rs1333371519 1930 dbSNP
rs1143758 1934 dbSNP
rs941807884 1940 dbSNP
rs369476444 1946 dbSNP
rs914812840 1954 dbSNP
rs900008649 1955 dbSNP
rs1378035690 1957 dbSNP
rs1160827326 1968 dbSNP
rs538901571 1986 dbSNP
rs746385710 1991 dbSNP
rs755793076 1995 dbSNP
rs1444634785 1997 dbSNP
rs1051387168 2007 dbSNP
rs891376414 2011 dbSNP
rs999291285 2016 dbSNP
rs570324259 2019 dbSNP
rs1471609064 2021 dbSNP
rs1042085408 2022 dbSNP
rs1162354511 2035 dbSNP
rs1242076211 2037 dbSNP
rs1351188630 2038 dbSNP
rs550917167 2044 dbSNP
rs1283345829 2048 dbSNP
rs1408046046 2056 dbSNP
rs17781705 2060 dbSNP
rs147036529 2076 dbSNP
rs1011677154 2085 dbSNP
rs1318413317 2094 dbSNP
rs751017629 2100 dbSNP
rs1299709654 2101 dbSNP
rs1387842735 2105 dbSNP
rs1419895862 2107 dbSNP
rs1413609606 2110 dbSNP
rs1404891027 2113 dbSNP
rs1022972891 2119 dbSNP
rs969869509 2121 dbSNP
rs138514299 2125 dbSNP
rs1338548480 2126 dbSNP
rs981231160 2139 dbSNP
rs1242870635 2146 dbSNP
rs1487319875 2149 dbSNP
rs1283878031 2154 dbSNP
rs1351456598 2163 dbSNP
rs928582705 2175 dbSNP
rs1057145355 2178 dbSNP
rs554506726 2181 dbSNP
rs1288951350 2186 dbSNP
rs11176681 2191 dbSNP
rs983747385 2192 dbSNP
rs1329092991 2193 dbSNP
rs1204634553 2206 dbSNP
rs1012693003 2220 dbSNP
rs1026801294 2224 dbSNP
rs888342001 2232 dbSNP
rs1004147677 2238 dbSNP
rs1186361084 2240 dbSNP
rs534061672 2248 dbSNP
rs1279539053 2260 dbSNP
rs558509845 2261 dbSNP
rs1015643051 2262 dbSNP
rs1038803360 2268 dbSNP
rs1395879421 2281 dbSNP
rs921675950 2284 dbSNP
rs756734130 2288 dbSNP
rs1051252503 2296 dbSNP
rs1194459522 2302 dbSNP
rs976864070 2307 dbSNP
rs999136581 2309 dbSNP
rs1053753003 2312 dbSNP
rs1028067881 2320 dbSNP
rs1178565442 2339 dbSNP
rs576839363 2341 dbSNP
rs1399772636 2351 dbSNP
rs149650400 2352 dbSNP
rs1315976233 2363 dbSNP
rs866332020 2364 dbSNP
rs562844023 2365 dbSNP
rs947595924 2373 dbSNP
rs1366511754 2376 dbSNP
rs977707272 2377 dbSNP
rs1372227404 2380 dbSNP
rs924566062 2391 dbSNP
rs1464569957 2392 dbSNP
rs1403010699 2395 dbSNP
rs1035504048 2396 dbSNP
rs1171225907 2396 dbSNP
rs1423350778 2397 dbSNP
rs938690412 2400 dbSNP
rs1057091962 2401 dbSNP
rs1253457674 2406 dbSNP
rs894547700 2407 dbSNP
rs948826545 2408 dbSNP
rs575073483 2419 dbSNP
rs144334704 2421 dbSNP
rs1004498030 2422 dbSNP
rs186530385 2426 dbSNP
rs1200260313 2446 dbSNP
rs867037698 2452 dbSNP
rs1444941167 2463 dbSNP
rs1379803743 2465 dbSNP
rs528177593 2468 dbSNP
rs1299193077 2481 dbSNP
rs59726441 2485 dbSNP
rs1357567935 2486 dbSNP
rs997838795 2497 dbSNP
rs974399810 2498 dbSNP
rs1250403596 2504 dbSNP
rs1028015248 2509 dbSNP
rs1379848635 2518 dbSNP
rs953752681 2538 dbSNP
rs553569107 2539 dbSNP
rs1021766654 2545 dbSNP
rs968914818 2553 dbSNP
rs1252383892 2554 dbSNP
rs1177747982 2559 dbSNP
rs978030014 2560 dbSNP
rs1482881496 2561 dbSNP
rs1168298010 2570 dbSNP
rs1211541627 2571 dbSNP
rs924878172 2576 dbSNP
rs960594580 2578 dbSNP
rs190985719 2579 dbSNP
rs934793953 2580 dbSNP
rs771762556 2581 dbSNP
rs3179662 2582 dbSNP
rs1238458988 2605 dbSNP
rs1356351127 2608 dbSNP
rs1308155156 2609 dbSNP
rs1228311679 2613 dbSNP
rs1306468220 2614 dbSNP
rs1304666123 2615 dbSNP
rs1415434900 2620 dbSNP
rs1181082443 2621 dbSNP
rs1189481087 2621 dbSNP
rs1261807710 2621 dbSNP
rs1295842787 2621 dbSNP
rs1485684745 2621 dbSNP
rs35359125 2621 dbSNP
rs1349913928 2622 dbSNP
rs199596677 2631 dbSNP
rs915927305 2631 dbSNP
rs1405660599 2632 dbSNP
rs1221212460 2640 dbSNP
rs1303988448 2640 dbSNP
rs570087682 2641 dbSNP
rs1363291430 2642 dbSNP
rs1232901383 2643 dbSNP
rs1271130085 2646 dbSNP
rs1344823502 2647 dbSNP
rs948772583 2648 dbSNP
rs1273525307 2650 dbSNP
rs1490360361 2651 dbSNP
rs1315384015 2659 dbSNP
rs893377665 2660 dbSNP
rs1339997127 2661 dbSNP
rs947437169 2662 dbSNP
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rs1309992703 5943 dbSNP
rs1302692475 5945 dbSNP
rs1384886066 5949 dbSNP
rs1034109702 5952 dbSNP
rs1305768936 5953 dbSNP
rs959451735 5957 dbSNP
rs189099412 5965 dbSNP
rs762036569 5969 dbSNP
rs929122937 5980 dbSNP
rs1464931116 5983 dbSNP
rs1305891172 5986 dbSNP
rs983312059 5990 dbSNP
rs1176833274 5992 dbSNP
rs1204388467 5998 dbSNP
rs1247822620 5999 dbSNP
rs976645255 6000 dbSNP
rs1483954143 6005 dbSNP
rs911793244 6012 dbSNP
rs531077815 6018 dbSNP
rs945639859 6021 dbSNP
rs549674756 6024 dbSNP
rs900172978 6026 dbSNP
rs1327830085 6029 dbSNP
rs1286143491 6030 dbSNP
rs935723392 6031 dbSNP
rs1229838661 6035 dbSNP
rs1336738078 6041 dbSNP
rs141087815 6047 dbSNP
rs1165336595 6052 dbSNP
rs1404921720 6065 dbSNP
rs866928517 6069 dbSNP
rs1303912878 6072 dbSNP
rs891573518 6075 dbSNP
rs1009675106 6077 dbSNP
rs895220044 6084 dbSNP
rs528695172 6095 dbSNP
rs760194992 6096 dbSNP
rs1364170015 6103 dbSNP
rs1186514363 6105 dbSNP
rs1421807519 6110 dbSNP
rs150280693 6121 dbSNP
rs1204212701 6123 dbSNP
rs1365739090 6126 dbSNP
rs1265633470 6127 dbSNP
rs1003758904 6137 dbSNP
rs1210213086 6140 dbSNP
rs565436429 6149 dbSNP
rs1350889013 6150 dbSNP
rs377680866 6157 dbSNP
rs10878598 6159 dbSNP
rs959634846 6161 dbSNP
rs772676952 6162 dbSNP
rs1316441127 6167 dbSNP
rs557317883 6172 dbSNP
rs762664232 6174 dbSNP
rs973461303 6178 dbSNP
rs569647307 6179 dbSNP
rs1322562688 6184 dbSNP
rs1457983094 6188 dbSNP
rs950799516 6193 dbSNP
rs1161643007 6198 dbSNP
rs1456256701 6199 dbSNP
rs983257247 6207 dbSNP
rs765864392 6230 dbSNP
rs181559191 6234 dbSNP
rs1245699985 6247 dbSNP
rs944571316 6248 dbSNP
rs1189884339 6255 dbSNP
rs1447059572 6258 dbSNP
rs1288752447 6272 dbSNP
rs1324021726 6273 dbSNP
rs1018066122 6277 dbSNP
rs965484833 6281 dbSNP
rs1292893795 6288 dbSNP
rs1228321525 6289 dbSNP
rs974660021 6292 dbSNP
rs1431622324 6298 dbSNP
rs1272920365 6299 dbSNP
rs556022766 6300 dbSNP
rs1190061088 6311 dbSNP
rs935653754 6319 dbSNP
rs1321890677 6326 dbSNP
rs1367214058 6329 dbSNP
rs1163936698 6338 dbSNP
rs1054151887 6341 dbSNP
rs1170379709 6342 dbSNP
rs1474762278 6345 dbSNP
rs966872193 6349 dbSNP
rs1181944127 6354 dbSNP
rs1196326711 6356 dbSNP
rs555636218 6362 dbSNP
rs1452909857 6364 dbSNP
rs760063311 6365 dbSNP
rs978318660 6367 dbSNP
rs1204952142 6368 dbSNP
rs17103688 6369 dbSNP
rs1459800594 6372 dbSNP
rs936702376 6373 dbSNP
rs1055029115 6381 dbSNP
rs916560491 6384 dbSNP
rs1273082310 6385 dbSNP
rs1164192032 6393 dbSNP
rs1389065241 6395 dbSNP
rs1235738381 6399 dbSNP
rs945815163 6406 dbSNP
rs541218727 6416 dbSNP
rs1046441939 6432 dbSNP
rs11176686 6440 dbSNP
rs1368468211 6446 dbSNP
rs1003708013 6450 dbSNP
rs1410408712 6452 dbSNP
rs755804656 6456 dbSNP
rs1055776238 6459 dbSNP
rs1430356152 6461 dbSNP
rs1478821236 6471 dbSNP
rs578127782 6478 dbSNP
rs1284840006 6480 dbSNP
rs1180996615 6484 dbSNP
rs1482310957 6499 dbSNP
rs556177345 6500 dbSNP
rs1254344154 6506 dbSNP
rs1357501870 6508 dbSNP
rs370284353 6513 dbSNP
rs1442306801 6520 dbSNP
rs993999273 6527 dbSNP
rs1048376252 6532 dbSNP
rs888352826 6546 dbSNP
rs1226783971 6551 dbSNP
rs1348418117 6569 dbSNP
rs1281007839 6571 dbSNP
rs895426343 6583 dbSNP
rs1293245272 6585 dbSNP
rs186573145 6596 dbSNP
rs1330186396 6598 dbSNP
rs995226197 6602 dbSNP
rs1027671749 6615 dbSNP
rs1332072521 6633 dbSNP
rs1470706071 6635 dbSNP
rs950750276 6644 dbSNP
rs1004978126 6647 dbSNP
rs1281619748 6649 dbSNP
rs1446061946 6655 dbSNP
rs1006586205 6664 dbSNP
rs1410658426 6667 dbSNP
rs530936769 6670 dbSNP
rs7974384 6672 dbSNP
rs1187090150 6675 dbSNP
rs998353828 6688 dbSNP
rs965864931 6689 dbSNP
rs974633574 6700 dbSNP
rs191481907 6701 dbSNP
rs1156585578 6702 dbSNP
rs1207066116 6708 dbSNP
rs181176522 6710 dbSNP
rs17103691 6713 dbSNP
rs1286117845 6715 dbSNP
rs1224181591 6727 dbSNP
rs1400317254 6730 dbSNP
rs780258639 6730 dbSNP
rs1282409303 6732 dbSNP
rs1335150467 6733 dbSNP
rs990193683 6743 dbSNP
rs751672559 6746 dbSNP
rs925560133 6747 dbSNP
rs912909679 6748 dbSNP
rs1413034413 6749 dbSNP
rs866950424 6754 dbSNP
rs958298257 6759 dbSNP
rs747047094 6765 dbSNP
rs928423421 6770 dbSNP
rs982643541 6775 dbSNP
rs939507411 6777 dbSNP
rs1247529605 6779 dbSNP
rs918671681 6781 dbSNP
rs571545077 6782 dbSNP
rs532828116 6792 dbSNP
rs1261599021 6793 dbSNP
rs1221088220 6797 dbSNP
rs1055320136 6801 dbSNP
rs1219419837 6803 dbSNP
rs1320902098 6803 dbSNP
rs1287385665 6805 dbSNP
rs929824636 6814 dbSNP
rs1282062067 6817 dbSNP
rs551082129 6818 dbSNP
rs1360001959 6820 dbSNP
rs1048239827 6825 dbSNP
rs1484369827 6827 dbSNP
rs888259154 6834 dbSNP
rs1435237077 6836 dbSNP
rs1348507093 6837 dbSNP
rs768878990 6844 dbSNP
rs1209531121 6846 dbSNP
rs895362224 6848 dbSNP
rs569501150 6851 dbSNP
rs537057689 6854 dbSNP
rs1390161309 6855 dbSNP
rs1167231400 6867 dbSNP
rs886441443 6870 dbSNP
rs61745746 6871 dbSNP
rs757281842 6873 dbSNP
rs1190831810 6877 dbSNP
rs1478250628 6880 dbSNP
rs1266535405 6884 dbSNP
rs189772337 6885 dbSNP
rs1490443536 6886 dbSNP
rs114416422 6887 dbSNP
rs1226068104 6888 dbSNP
rs1432870623 6893 dbSNP
rs1020480281 6912 dbSNP
rs183534649 6915 dbSNP
rs1218312058 6920 dbSNP
rs1364995566 6923 dbSNP
rs996389880 6933 dbSNP
rs902911807 6935 dbSNP
rs1393628035 6937 dbSNP
rs1327488209 6942 dbSNP
rs1335508269 6954 dbSNP
rs1306728598 6960 dbSNP
rs999876347 6962 dbSNP
rs577935258 6963 dbSNP
rs1175387567 6965 dbSNP
rs1431486912 6972 dbSNP
rs1431770532 6974 dbSNP
rs1200409058 6996 dbSNP
rs1490468931 6999 dbSNP
rs1305086437 7004 dbSNP
rs1250727084 7007 dbSNP
rs1194010952 7012 dbSNP
rs1481553750 7016 dbSNP
rs957484330 7017 dbSNP
rs958164811 7018 dbSNP
rs539089324 7020 dbSNP
rs375903281 7022 dbSNP
rs370540770 7026 dbSNP
rs748695193 7028 dbSNP
rs1223680340 7029 dbSNP
rs1350254661 7036 dbSNP
rs1274700189 7037 dbSNP
rs1286801080 7038 dbSNP
rs1023886836 7043 dbSNP
rs1340912429 7051 dbSNP
rs1397893487 7058 dbSNP
rs913192704 7060 dbSNP
rs1464665825 7061 dbSNP
rs1408369900 7064 dbSNP
rs971175433 7068 dbSNP
rs982116237 7071 dbSNP
rs1472349055 7074 dbSNP
rs138953785 7078 dbSNP
rs1179338378 7099 dbSNP
rs967011700 7105 dbSNP
rs560912870 7112 dbSNP
rs1451906992 7124 dbSNP
rs981100316 7124 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' aucucuuccUGUCGACACU-CGAGa 5'
                   | | :||||: |||| 
Target 5' ucuuccuuaAAAUUUGUGGUGCUCc 3'
 		20 - 44
2 
miRNA  3' aucucuuccUGUCGACAC-UCGaga 5'
                   ||| |  || |||   
Target 5' -cucauuucACA-C--UGUAGCcuc 3'
 		1 - 21
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_018448 | 3UTR | UGCUGGGGAACAAAGCUUUUGCAGUACCUUAUAUUGUAGUUAAAAUUUUAUUUAACAUAUCCUUCAGUGAGCUCAUUUCACACUGUAGCCUCUUCCUUAAAAUUUGUGGUGCUCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_018448 | 3UTR | AACAAAGCUUUUGCAGUACCUUAUAUUGUAGUUAAAAUUUUAUUUAACAUAUCCUUCAGUGAGCUCAUUUCACACUGUAGCCUCUUCCUUAAAAUUUGUGGUGCUCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_018448 | 3UTR | ACCUUAUAUUGUAGUUAAAAUUUUAUUUAACAUAUCCUUCAGUGAGCUCAUUUCACACUGUAGCCUCUUCCUUAAAAUUUGUGGUGCUCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_018448 | 3UTR | GUAGUUAAAAUUUUAUUUAACAUAUCCUUCAGUGAGCUCAUUUCACACUGUAGCCUCUUCCUUAAAAUUUGUGGUGCUCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_018448 | 3UTR | UGUAGUUAAAAUUUUAUUUAACAUAUCCUUCAGUGAGCUCAUUUCACACUGUAGCCUCUUCCUUAAAAUUUGUGGUGCUCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000545606.1 | 3UTR | CUCAUUUCACACUGUAGCCUCUUCCUUAAAAUUUGUGGUGCUCCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
40 hsa-miR-3670 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT094967 SEPT8 septin 8 2 17
MIRT115520 MAZ MYC associated zinc finger protein 2 2
MIRT164547 MSMO1 methylsterol monooxygenase 1 2 2
MIRT246182 TXNIP thioredoxin interacting protein 2 2
MIRT255139 SMYD1 SET and MYND domain containing 1 2 4
MIRT441534 TMEM185B transmembrane protein 185B 2 4
MIRT444547 UBE2D3 ubiquitin conjugating enzyme E2 D3 2 2
MIRT449681 CDR1 cerebellar degeneration related protein 1 2 2
MIRT450035 LEPROTL1 leptin receptor overlapping transcript like 1 2 2
MIRT466801 SUPT16H SPT16 homolog, facilitates chromatin remodeling subunit 2 2
MIRT468269 SFXN1 sideroflexin 1 2 2
MIRT470394 PPP1R16B protein phosphatase 1 regulatory subunit 16B 2 2
MIRT480056 CAND1 cullin associated and neddylation dissociated 1 2 2
MIRT480581 BUB3 BUB3, mitotic checkpoint protein 2 2
MIRT489189 KIF21B kinesin family member 21B 2 2
MIRT497178 ZBTB40 zinc finger and BTB domain containing 40 2 2
MIRT527654 CD300E CD300e molecule 2 2
MIRT529853 TMEM105 transmembrane protein 105 2 2
MIRT530037 SMC1A structural maintenance of chromosomes 1A 2 2
MIRT533264 VAV3 vav guanine nucleotide exchange factor 3 2 4
MIRT534022 STXBP4 syntaxin binding protein 4 2 2
MIRT537345 FKBP15 FK506 binding protein 15 2 2
MIRT556604 LDOC1L retrotransposon Gag like 6 2 4
MIRT559945 TRMT112 tRNA methyltransferase subunit 11-2 2 2
MIRT569744 C2orf71 chromosome 2 open reading frame 71 2 2
MIRT570637 KLF13 Kruppel like factor 13 2 2
MIRT573064 TRIB1 tribbles pseudokinase 1 2 2
MIRT622727 PITPNM3 PITPNM family member 3 2 2
MIRT626726 TRIM65 tripartite motif containing 65 2 2
MIRT631824 TMEM154 transmembrane protein 154 2 2
MIRT638040 SHPK sedoheptulokinase 2 2
MIRT644096 SIAH3 siah E3 ubiquitin protein ligase family member 3 2 2
MIRT652233 TRAPPC3L trafficking protein particle complex 3 like 2 2
MIRT665387 WIZ widely interspaced zinc finger motifs 2 2
MIRT703560 FGFR1OP FGFR1 oncogene partner 2 2
MIRT713310 SNRNP25 small nuclear ribonucleoprotein U11/U12 subunit 25 2 2
MIRT717645 HLX H2.0 like homeobox 2 2
MIRT722259 POLQ DNA polymerase theta 2 2
MIRT723863 CD209 CD209 molecule 2 2
MIRT724656 PXDN peroxidasin 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3670 Cisplatin 5460033 NSC119875 approved sensitive cell line (CIS)
hsa-miR-3670 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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